Multiple sequence alignment - TraesCS7B01G234600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G234600 chr7B 100.000 2792 0 0 1 2792 438949432 438946641 0.000000e+00 5156.0
1 TraesCS7B01G234600 chr7B 97.238 362 10 0 2431 2792 438941979 438941618 5.110000e-172 614.0
2 TraesCS7B01G234600 chr7B 96.676 361 11 1 2431 2791 391021927 391021568 1.430000e-167 599.0
3 TraesCS7B01G234600 chr7B 94.751 362 18 1 2431 2792 391026956 391026596 1.880000e-156 562.0
4 TraesCS7B01G234600 chr7D 92.845 1719 76 19 589 2287 422155151 422156842 0.000000e+00 2449.0
5 TraesCS7B01G234600 chr7D 86.622 598 46 11 1 591 422154247 422154817 5.070000e-177 630.0
6 TraesCS7B01G234600 chr7D 90.667 150 13 1 2283 2431 422171449 422171598 6.100000e-47 198.0
7 TraesCS7B01G234600 chr7A 91.793 1450 84 17 855 2290 510949399 510947971 0.000000e+00 1986.0
8 TraesCS7B01G234600 chr7A 85.012 427 44 12 441 865 510949826 510949418 1.550000e-112 416.0
9 TraesCS7B01G234600 chr7A 87.023 131 16 1 2302 2431 510944602 510944472 2.240000e-31 147.0
10 TraesCS7B01G234600 chr2B 97.238 362 10 0 2431 2792 545414432 545414071 5.110000e-172 614.0
11 TraesCS7B01G234600 chr2B 96.961 362 11 0 2431 2792 545409429 545409068 2.380000e-170 608.0
12 TraesCS7B01G234600 chr1D 95.868 363 14 1 2430 2792 10823714 10823353 1.110000e-163 586.0
13 TraesCS7B01G234600 chr1D 95.856 362 14 1 2431 2792 10818683 10818323 4.010000e-163 584.0
14 TraesCS7B01G234600 chr1D 94.751 362 18 1 2431 2792 21739128 21739488 1.880000e-156 562.0
15 TraesCS7B01G234600 chr1D 94.215 363 20 1 2430 2792 21734098 21734459 1.130000e-153 553.0
16 TraesCS7B01G234600 chr1D 93.182 44 3 0 390 433 316403005 316403048 6.460000e-07 65.8
17 TraesCS7B01G234600 chr5D 82.955 88 12 3 1 87 544447983 544447898 2.980000e-10 76.8
18 TraesCS7B01G234600 chr5D 100.000 29 0 0 404 432 456618185 456618157 1.000000e-03 54.7
19 TraesCS7B01G234600 chr5B 85.075 67 8 2 1 67 509105914 509105850 1.790000e-07 67.6
20 TraesCS7B01G234600 chr5B 82.609 69 9 3 1 68 509108837 509108771 1.080000e-04 58.4
21 TraesCS7B01G234600 chr5A 100.000 29 0 0 404 432 574403234 574403206 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G234600 chr7B 438946641 438949432 2791 True 5156.000000 5156 100.000000 1 2792 1 chr7B.!!$R4 2791
1 TraesCS7B01G234600 chr7D 422154247 422156842 2595 False 1539.500000 2449 89.733500 1 2287 2 chr7D.!!$F2 2286
2 TraesCS7B01G234600 chr7A 510944472 510949826 5354 True 849.666667 1986 87.942667 441 2431 3 chr7A.!!$R1 1990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 1214 0.249868 ACGTGCTTGCTAACTGCTCA 60.25 50.0 0.0 0.0 43.37 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 6089 0.032267 TACGATGTGTGCGACAACCA 59.968 50.0 0.0 0.0 38.36 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 238 5.126869 TGAGTGAACCTTTTTGAATCTTGCA 59.873 36.000 0.00 0.00 0.00 4.08
239 246 8.109705 ACCTTTTTGAATCTTGCAAACTTTTT 57.890 26.923 0.00 0.00 35.20 1.94
369 377 5.335976 GGGATTCCGGCTATTGAAATGATTC 60.336 44.000 0.00 0.00 36.04 2.52
403 411 9.841880 CTAAGCATCATTTTGATATCATCTTGG 57.158 33.333 6.17 0.00 34.28 3.61
529 537 2.290323 TGGCCTAAGTCCTCAAGAAAGC 60.290 50.000 3.32 0.00 0.00 3.51
543 551 2.928334 AGAAAGCCGCAGATCATCAAT 58.072 42.857 0.00 0.00 0.00 2.57
547 555 5.533903 AGAAAGCCGCAGATCATCAATAATT 59.466 36.000 0.00 0.00 0.00 1.40
582 590 6.100792 CTCTTAAATTCAAGAGGTCGAAGC 57.899 41.667 10.19 0.00 45.20 3.86
618 962 2.743664 TGAGCTGACAATTGAATCCGTG 59.256 45.455 13.59 0.00 0.00 4.94
619 963 3.002791 GAGCTGACAATTGAATCCGTGA 58.997 45.455 13.59 0.00 0.00 4.35
620 964 2.744202 AGCTGACAATTGAATCCGTGAC 59.256 45.455 13.59 0.00 0.00 3.67
621 965 2.159517 GCTGACAATTGAATCCGTGACC 60.160 50.000 13.59 0.00 0.00 4.02
622 966 2.073056 TGACAATTGAATCCGTGACCG 58.927 47.619 13.59 0.00 0.00 4.79
623 967 2.073816 GACAATTGAATCCGTGACCGT 58.926 47.619 13.59 0.00 0.00 4.83
632 976 1.066752 CCGTGACCGTGAGTTGACA 59.933 57.895 0.00 0.00 0.00 3.58
645 989 6.457663 CCGTGAGTTGACAGTTTGTTATTTGA 60.458 38.462 0.00 0.00 0.00 2.69
646 990 7.132213 CGTGAGTTGACAGTTTGTTATTTGAT 58.868 34.615 0.00 0.00 0.00 2.57
647 991 7.643764 CGTGAGTTGACAGTTTGTTATTTGATT 59.356 33.333 0.00 0.00 0.00 2.57
687 1031 8.673626 TGATTTTCGTTCTGAGATTATTTTGC 57.326 30.769 0.00 0.00 0.00 3.68
690 1034 3.063452 TCGTTCTGAGATTATTTTGCGCC 59.937 43.478 4.18 0.00 0.00 6.53
695 1039 2.486203 TGAGATTATTTTGCGCCGTTGT 59.514 40.909 4.18 0.00 0.00 3.32
736 1080 5.350633 TCAAAGCTTCAATTTGTGTTGGAG 58.649 37.500 0.00 0.00 38.50 3.86
756 1100 1.535462 GTTCAAAGTGCGCACCAGTAT 59.465 47.619 35.51 15.48 0.00 2.12
767 1111 1.594862 GCACCAGTATCATTCTCGTGC 59.405 52.381 0.00 0.00 41.08 5.34
769 1113 3.525537 CACCAGTATCATTCTCGTGCTT 58.474 45.455 0.00 0.00 0.00 3.91
776 1120 6.257411 CAGTATCATTCTCGTGCTTCAGATTT 59.743 38.462 0.00 0.00 0.00 2.17
783 1127 2.987149 TCGTGCTTCAGATTTCGAGTTC 59.013 45.455 0.00 0.00 0.00 3.01
788 1132 6.202226 GTGCTTCAGATTTCGAGTTCTTTTT 58.798 36.000 0.00 0.00 0.00 1.94
820 1164 4.158384 GTTTGTTTATGCGTGTCATCCAG 58.842 43.478 0.00 0.00 36.63 3.86
821 1165 3.326836 TGTTTATGCGTGTCATCCAGA 57.673 42.857 0.00 0.00 36.63 3.86
822 1166 3.669536 TGTTTATGCGTGTCATCCAGAA 58.330 40.909 0.00 0.00 36.63 3.02
823 1167 4.068599 TGTTTATGCGTGTCATCCAGAAA 58.931 39.130 0.00 0.00 36.63 2.52
824 1168 4.699735 TGTTTATGCGTGTCATCCAGAAAT 59.300 37.500 0.00 0.00 36.63 2.17
825 1169 5.877564 TGTTTATGCGTGTCATCCAGAAATA 59.122 36.000 0.00 0.00 36.63 1.40
826 1170 6.372937 TGTTTATGCGTGTCATCCAGAAATAA 59.627 34.615 0.00 0.00 36.63 1.40
827 1171 6.993786 TTATGCGTGTCATCCAGAAATAAA 57.006 33.333 0.00 0.00 36.63 1.40
828 1172 5.895636 ATGCGTGTCATCCAGAAATAAAA 57.104 34.783 0.00 0.00 0.00 1.52
829 1173 5.895636 TGCGTGTCATCCAGAAATAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
832 1183 7.995289 TGCGTGTCATCCAGAAATAAAATAAT 58.005 30.769 0.00 0.00 0.00 1.28
863 1214 0.249868 ACGTGCTTGCTAACTGCTCA 60.250 50.000 0.00 0.00 43.37 4.26
865 1216 1.136141 CGTGCTTGCTAACTGCTCAAG 60.136 52.381 0.00 0.00 43.37 3.02
866 1217 1.876156 GTGCTTGCTAACTGCTCAAGT 59.124 47.619 0.00 0.00 42.60 3.16
867 1218 3.067106 GTGCTTGCTAACTGCTCAAGTA 58.933 45.455 0.00 0.00 38.56 2.24
910 1295 7.279536 GCAGATCATCACGAATCATAATACCAT 59.720 37.037 0.00 0.00 0.00 3.55
981 1366 1.055849 TCACAGAAGCTACTGCCCAA 58.944 50.000 0.00 0.00 41.06 4.12
1048 1433 4.363990 CTCGACCACGCCTGCACT 62.364 66.667 0.00 0.00 39.58 4.40
1085 1470 2.741878 TACTCTCCCCAACCCAGCGT 62.742 60.000 0.00 0.00 0.00 5.07
1304 1690 2.805353 CGTGCTCCCGACGTTCAG 60.805 66.667 0.00 0.00 32.06 3.02
1305 1691 2.649034 GTGCTCCCGACGTTCAGA 59.351 61.111 0.00 0.00 0.00 3.27
1314 1700 0.377554 CGACGTTCAGATACCTCGCT 59.622 55.000 0.00 0.00 0.00 4.93
1638 2027 1.439644 GTCTCCAGCGATCAGGTCC 59.560 63.158 0.00 0.00 0.00 4.46
1677 2066 2.743752 CCTCCACGTGAGCAATGCG 61.744 63.158 19.30 0.00 39.98 4.73
1710 2099 3.129502 CCGTCGCCGACTAGACCA 61.130 66.667 16.07 0.00 35.63 4.02
1727 2116 4.353437 AACGACGCCGGACAGTCC 62.353 66.667 5.05 9.92 40.78 3.85
1731 2120 1.514087 GACGCCGGACAGTCCAATA 59.486 57.895 20.13 0.00 35.91 1.90
1777 2166 2.280708 GCGATGACAGATTTGCATTTGC 59.719 45.455 0.00 0.00 42.50 3.68
1841 2233 5.306678 TCATTCTGGGGCAACAAATTTTACT 59.693 36.000 0.00 0.00 39.74 2.24
1871 2263 5.537188 TCAAATGGACCAGCAATTTTGTAC 58.463 37.500 14.29 0.00 0.00 2.90
1872 2264 5.304101 TCAAATGGACCAGCAATTTTGTACT 59.696 36.000 14.29 0.00 0.00 2.73
1875 2267 6.909550 ATGGACCAGCAATTTTGTACTTAA 57.090 33.333 0.00 0.00 0.00 1.85
1876 2268 6.716934 TGGACCAGCAATTTTGTACTTAAA 57.283 33.333 0.00 0.00 0.00 1.52
1877 2269 7.296628 TGGACCAGCAATTTTGTACTTAAAT 57.703 32.000 0.00 0.00 0.00 1.40
1878 2270 8.410673 TGGACCAGCAATTTTGTACTTAAATA 57.589 30.769 0.00 0.00 0.00 1.40
1879 2271 8.301002 TGGACCAGCAATTTTGTACTTAAATAC 58.699 33.333 0.00 0.00 0.00 1.89
2096 2507 3.482110 GCACACTTCGCAACAAGTAAAAG 59.518 43.478 0.00 0.00 34.70 2.27
2101 2512 5.452302 CACTTCGCAACAAGTAAAAGTTCTG 59.548 40.000 0.00 0.00 34.70 3.02
2112 2523 1.915614 AAAGTTCTGCGCATGCCTCG 61.916 55.000 12.24 0.00 41.78 4.63
2156 2567 4.478371 CATCGCCCAGGAGCAGCA 62.478 66.667 0.00 0.00 0.00 4.41
2247 2658 0.102481 ACAACTTGTCGCAGTCGTCT 59.898 50.000 0.00 0.00 36.96 4.18
2290 2701 2.356194 CAGCCGGCTTGCAAAACC 60.356 61.111 30.60 4.20 0.00 3.27
2291 2702 2.837291 AGCCGGCTTGCAAAACCA 60.837 55.556 27.08 0.00 0.00 3.67
2292 2703 2.209315 AGCCGGCTTGCAAAACCAT 61.209 52.632 27.08 0.00 0.00 3.55
2293 2704 2.028733 GCCGGCTTGCAAAACCATG 61.029 57.895 22.15 8.89 0.00 3.66
2294 2705 1.367102 CCGGCTTGCAAAACCATGT 59.633 52.632 16.23 0.00 0.00 3.21
2296 2707 1.402720 CCGGCTTGCAAAACCATGTAG 60.403 52.381 16.23 2.18 0.00 2.74
2297 2708 1.713597 GGCTTGCAAAACCATGTAGC 58.286 50.000 12.25 3.25 32.73 3.58
2298 2709 1.000731 GGCTTGCAAAACCATGTAGCA 59.999 47.619 12.25 0.00 34.14 3.49
2315 6083 2.928334 AGCATCCACCACATCATCTTC 58.072 47.619 0.00 0.00 0.00 2.87
2318 6087 2.967599 TCCACCACATCATCTTCTCG 57.032 50.000 0.00 0.00 0.00 4.04
2320 6089 1.134580 CCACCACATCATCTTCTCGCT 60.135 52.381 0.00 0.00 0.00 4.93
2332 6101 2.636778 TTCTCGCTGGTTGTCGCACA 62.637 55.000 0.00 0.00 0.00 4.57
2342 6111 1.341369 TTGTCGCACACATCGTAGCG 61.341 55.000 0.00 0.00 42.62 4.26
2343 6112 1.800315 GTCGCACACATCGTAGCGT 60.800 57.895 5.55 0.00 42.20 5.07
2346 6115 1.341369 CGCACACATCGTAGCGTCAA 61.341 55.000 0.00 0.00 39.06 3.18
2354 6123 0.666274 TCGTAGCGTCAAGTTGCCTG 60.666 55.000 0.00 0.00 0.00 4.85
2359 6128 1.503542 CGTCAAGTTGCCTGCCATC 59.496 57.895 0.00 0.00 0.00 3.51
2369 6138 3.129502 CTGCCATCGGGTGCACTG 61.130 66.667 17.98 10.04 36.17 3.66
2370 6139 4.720902 TGCCATCGGGTGCACTGG 62.721 66.667 17.98 17.12 36.17 4.00
2384 6153 2.398554 ACTGGTAGCGCCGCAATTG 61.399 57.895 13.36 0.00 41.21 2.32
2388 6157 2.152078 GTAGCGCCGCAATTGCAAC 61.152 57.895 28.77 18.64 42.21 4.17
2395 6164 1.208870 CGCAATTGCAACGCCTACA 59.791 52.632 28.77 0.00 42.21 2.74
2396 6165 0.179166 CGCAATTGCAACGCCTACAT 60.179 50.000 28.77 0.00 42.21 2.29
2431 6200 0.178964 AACCCACCACAACATCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
2432 6201 1.360393 ACCCACCACAACATCCCTGT 61.360 55.000 0.00 0.00 37.12 4.00
2433 6202 0.895100 CCCACCACAACATCCCTGTG 60.895 60.000 0.00 0.00 43.15 3.66
2434 6203 0.110295 CCACCACAACATCCCTGTGA 59.890 55.000 4.57 0.00 45.80 3.58
2435 6204 1.527034 CACCACAACATCCCTGTGAG 58.473 55.000 4.57 0.00 45.80 3.51
2436 6205 0.401738 ACCACAACATCCCTGTGAGG 59.598 55.000 4.57 0.00 45.80 3.86
2437 6206 0.692476 CCACAACATCCCTGTGAGGA 59.308 55.000 4.57 0.00 45.80 3.71
2439 6208 2.636830 CACAACATCCCTGTGAGGATC 58.363 52.381 0.00 0.00 45.21 3.36
2440 6209 2.026915 CACAACATCCCTGTGAGGATCA 60.027 50.000 0.00 0.00 45.21 2.92
2452 6221 2.744760 TGAGGATCACTCTTGCTAGCT 58.255 47.619 17.23 0.00 42.56 3.32
2453 6222 3.903467 TGAGGATCACTCTTGCTAGCTA 58.097 45.455 17.23 7.59 42.56 3.32
2454 6223 4.478203 TGAGGATCACTCTTGCTAGCTAT 58.522 43.478 17.23 0.00 42.56 2.97
2455 6224 4.280425 TGAGGATCACTCTTGCTAGCTATG 59.720 45.833 17.23 4.09 42.56 2.23
2456 6225 3.577848 AGGATCACTCTTGCTAGCTATGG 59.422 47.826 17.23 6.63 0.00 2.74
2457 6226 3.576118 GGATCACTCTTGCTAGCTATGGA 59.424 47.826 17.23 6.56 0.00 3.41
2458 6227 4.222588 GGATCACTCTTGCTAGCTATGGAT 59.777 45.833 17.23 10.96 0.00 3.41
2459 6228 4.862902 TCACTCTTGCTAGCTATGGATC 57.137 45.455 17.23 0.00 0.00 3.36
2460 6229 4.478203 TCACTCTTGCTAGCTATGGATCT 58.522 43.478 17.23 0.00 0.00 2.75
2461 6230 4.280425 TCACTCTTGCTAGCTATGGATCTG 59.720 45.833 17.23 7.12 0.00 2.90
2462 6231 4.280425 CACTCTTGCTAGCTATGGATCTGA 59.720 45.833 17.23 0.00 0.00 3.27
2463 6232 4.523943 ACTCTTGCTAGCTATGGATCTGAG 59.476 45.833 17.23 11.33 0.00 3.35
2464 6233 4.734266 TCTTGCTAGCTATGGATCTGAGA 58.266 43.478 17.23 0.00 0.00 3.27
2465 6234 4.766373 TCTTGCTAGCTATGGATCTGAGAG 59.234 45.833 17.23 0.00 0.00 3.20
2466 6235 4.111255 TGCTAGCTATGGATCTGAGAGT 57.889 45.455 17.23 0.00 0.00 3.24
2467 6236 4.478203 TGCTAGCTATGGATCTGAGAGTT 58.522 43.478 17.23 0.00 0.00 3.01
2468 6237 4.898265 TGCTAGCTATGGATCTGAGAGTTT 59.102 41.667 17.23 0.00 0.00 2.66
2469 6238 5.010516 TGCTAGCTATGGATCTGAGAGTTTC 59.989 44.000 17.23 0.00 0.00 2.78
2470 6239 5.010516 GCTAGCTATGGATCTGAGAGTTTCA 59.989 44.000 7.70 0.00 0.00 2.69
2471 6240 6.295236 GCTAGCTATGGATCTGAGAGTTTCAT 60.295 42.308 7.70 0.00 34.68 2.57
2472 6241 5.856156 AGCTATGGATCTGAGAGTTTCATG 58.144 41.667 0.00 0.00 34.68 3.07
2473 6242 4.996122 GCTATGGATCTGAGAGTTTCATGG 59.004 45.833 0.00 0.00 34.68 3.66
2474 6243 3.920231 TGGATCTGAGAGTTTCATGGG 57.080 47.619 0.00 0.00 34.68 4.00
2475 6244 2.507058 TGGATCTGAGAGTTTCATGGGG 59.493 50.000 0.00 0.00 34.68 4.96
2476 6245 2.774234 GGATCTGAGAGTTTCATGGGGA 59.226 50.000 0.00 0.00 34.68 4.81
2477 6246 3.393941 GGATCTGAGAGTTTCATGGGGAT 59.606 47.826 0.00 0.00 34.68 3.85
2478 6247 4.141298 GGATCTGAGAGTTTCATGGGGATT 60.141 45.833 0.00 0.00 34.68 3.01
2479 6248 4.494091 TCTGAGAGTTTCATGGGGATTC 57.506 45.455 0.00 0.00 34.68 2.52
2480 6249 3.118629 TCTGAGAGTTTCATGGGGATTCG 60.119 47.826 0.00 0.00 34.68 3.34
2481 6250 2.837591 TGAGAGTTTCATGGGGATTCGA 59.162 45.455 0.00 0.00 0.00 3.71
2482 6251 3.118629 TGAGAGTTTCATGGGGATTCGAG 60.119 47.826 0.00 0.00 0.00 4.04
2483 6252 1.943340 GAGTTTCATGGGGATTCGAGC 59.057 52.381 0.00 0.00 0.00 5.03
2484 6253 1.561542 AGTTTCATGGGGATTCGAGCT 59.438 47.619 0.00 0.00 0.00 4.09
2485 6254 2.771943 AGTTTCATGGGGATTCGAGCTA 59.228 45.455 0.00 0.00 0.00 3.32
2486 6255 3.199946 AGTTTCATGGGGATTCGAGCTAA 59.800 43.478 0.00 0.00 0.00 3.09
2487 6256 3.475566 TTCATGGGGATTCGAGCTAAG 57.524 47.619 0.00 0.00 0.00 2.18
2488 6257 2.677914 TCATGGGGATTCGAGCTAAGA 58.322 47.619 0.00 0.00 0.00 2.10
2489 6258 3.242867 TCATGGGGATTCGAGCTAAGAT 58.757 45.455 0.00 0.00 0.00 2.40
2490 6259 4.416516 TCATGGGGATTCGAGCTAAGATA 58.583 43.478 0.00 0.00 0.00 1.98
2491 6260 5.026121 TCATGGGGATTCGAGCTAAGATAT 58.974 41.667 0.00 0.00 0.00 1.63
2492 6261 5.485353 TCATGGGGATTCGAGCTAAGATATT 59.515 40.000 0.00 0.00 0.00 1.28
2493 6262 5.825593 TGGGGATTCGAGCTAAGATATTT 57.174 39.130 0.00 0.00 0.00 1.40
2494 6263 5.551233 TGGGGATTCGAGCTAAGATATTTG 58.449 41.667 0.00 0.00 0.00 2.32
2495 6264 5.306937 TGGGGATTCGAGCTAAGATATTTGA 59.693 40.000 0.00 0.00 0.00 2.69
2496 6265 6.183361 TGGGGATTCGAGCTAAGATATTTGAA 60.183 38.462 0.00 0.00 0.00 2.69
2497 6266 6.881602 GGGGATTCGAGCTAAGATATTTGAAT 59.118 38.462 0.00 0.00 0.00 2.57
2498 6267 7.391833 GGGGATTCGAGCTAAGATATTTGAATT 59.608 37.037 0.00 0.00 0.00 2.17
2499 6268 8.787852 GGGATTCGAGCTAAGATATTTGAATTT 58.212 33.333 0.00 0.00 0.00 1.82
2500 6269 9.818796 GGATTCGAGCTAAGATATTTGAATTTC 57.181 33.333 0.00 0.00 0.00 2.17
2501 6270 9.522454 GATTCGAGCTAAGATATTTGAATTTCG 57.478 33.333 0.00 0.00 0.00 3.46
2502 6271 7.408132 TCGAGCTAAGATATTTGAATTTCGG 57.592 36.000 0.00 0.00 0.00 4.30
2503 6272 7.207383 TCGAGCTAAGATATTTGAATTTCGGA 58.793 34.615 0.00 0.00 0.00 4.55
2504 6273 7.872993 TCGAGCTAAGATATTTGAATTTCGGAT 59.127 33.333 0.00 0.00 0.00 4.18
2505 6274 7.954248 CGAGCTAAGATATTTGAATTTCGGATG 59.046 37.037 0.00 0.00 0.00 3.51
2506 6275 8.908786 AGCTAAGATATTTGAATTTCGGATGA 57.091 30.769 0.00 0.00 0.00 2.92
2507 6276 8.997323 AGCTAAGATATTTGAATTTCGGATGAG 58.003 33.333 0.00 0.00 0.00 2.90
2508 6277 8.233190 GCTAAGATATTTGAATTTCGGATGAGG 58.767 37.037 0.00 0.00 0.00 3.86
2509 6278 9.494271 CTAAGATATTTGAATTTCGGATGAGGA 57.506 33.333 0.00 0.00 0.00 3.71
2510 6279 8.930846 AAGATATTTGAATTTCGGATGAGGAT 57.069 30.769 0.00 0.00 0.00 3.24
2511 6280 8.930846 AGATATTTGAATTTCGGATGAGGATT 57.069 30.769 0.00 0.00 0.00 3.01
2512 6281 9.007901 AGATATTTGAATTTCGGATGAGGATTC 57.992 33.333 0.00 0.00 33.00 2.52
2513 6282 5.835113 TTTGAATTTCGGATGAGGATTCC 57.165 39.130 0.00 0.00 32.14 3.01
2514 6283 4.778213 TGAATTTCGGATGAGGATTCCT 57.222 40.909 4.44 4.44 36.03 3.36
2522 6291 4.073201 GAGGATTCCTCCCAGCCA 57.927 61.111 20.35 0.00 44.36 4.75
2523 6292 1.529309 GAGGATTCCTCCCAGCCAC 59.471 63.158 20.35 0.00 44.36 5.01
2524 6293 1.988982 GAGGATTCCTCCCAGCCACC 61.989 65.000 20.35 0.00 44.36 4.61
2525 6294 2.597903 GATTCCTCCCAGCCACCC 59.402 66.667 0.00 0.00 0.00 4.61
2526 6295 3.406595 GATTCCTCCCAGCCACCCG 62.407 68.421 0.00 0.00 0.00 5.28
2534 6303 3.390521 CAGCCACCCGCACCTCTA 61.391 66.667 0.00 0.00 41.38 2.43
2535 6304 2.365635 AGCCACCCGCACCTCTAT 60.366 61.111 0.00 0.00 41.38 1.98
2536 6305 2.109181 GCCACCCGCACCTCTATC 59.891 66.667 0.00 0.00 37.47 2.08
2537 6306 2.435693 GCCACCCGCACCTCTATCT 61.436 63.158 0.00 0.00 37.47 1.98
2538 6307 1.443407 CCACCCGCACCTCTATCTG 59.557 63.158 0.00 0.00 0.00 2.90
2539 6308 1.330655 CCACCCGCACCTCTATCTGT 61.331 60.000 0.00 0.00 0.00 3.41
2540 6309 0.537188 CACCCGCACCTCTATCTGTT 59.463 55.000 0.00 0.00 0.00 3.16
2541 6310 0.824759 ACCCGCACCTCTATCTGTTC 59.175 55.000 0.00 0.00 0.00 3.18
2542 6311 0.824109 CCCGCACCTCTATCTGTTCA 59.176 55.000 0.00 0.00 0.00 3.18
2543 6312 1.207089 CCCGCACCTCTATCTGTTCAA 59.793 52.381 0.00 0.00 0.00 2.69
2544 6313 2.271800 CCGCACCTCTATCTGTTCAAC 58.728 52.381 0.00 0.00 0.00 3.18
2545 6314 2.271800 CGCACCTCTATCTGTTCAACC 58.728 52.381 0.00 0.00 0.00 3.77
2546 6315 2.271800 GCACCTCTATCTGTTCAACCG 58.728 52.381 0.00 0.00 0.00 4.44
2547 6316 2.094182 GCACCTCTATCTGTTCAACCGA 60.094 50.000 0.00 0.00 0.00 4.69
2548 6317 3.775202 CACCTCTATCTGTTCAACCGAG 58.225 50.000 0.00 0.00 0.00 4.63
2549 6318 2.166664 ACCTCTATCTGTTCAACCGAGC 59.833 50.000 0.00 0.00 0.00 5.03
2550 6319 2.482142 CCTCTATCTGTTCAACCGAGCC 60.482 54.545 0.00 0.00 0.00 4.70
2551 6320 1.134367 TCTATCTGTTCAACCGAGCCG 59.866 52.381 0.00 0.00 0.00 5.52
2552 6321 0.459585 TATCTGTTCAACCGAGCCGC 60.460 55.000 0.00 0.00 0.00 6.53
2553 6322 3.777925 CTGTTCAACCGAGCCGCG 61.778 66.667 0.00 0.00 40.47 6.46
2571 6340 4.179579 GCCGCAGCCGTCCAATTC 62.180 66.667 0.00 0.00 0.00 2.17
2572 6341 3.508840 CCGCAGCCGTCCAATTCC 61.509 66.667 0.00 0.00 0.00 3.01
2573 6342 2.436646 CGCAGCCGTCCAATTCCT 60.437 61.111 0.00 0.00 0.00 3.36
2574 6343 1.153449 CGCAGCCGTCCAATTCCTA 60.153 57.895 0.00 0.00 0.00 2.94
2575 6344 1.154205 CGCAGCCGTCCAATTCCTAG 61.154 60.000 0.00 0.00 0.00 3.02
2576 6345 1.440145 GCAGCCGTCCAATTCCTAGC 61.440 60.000 0.00 0.00 0.00 3.42
2577 6346 0.815615 CAGCCGTCCAATTCCTAGCC 60.816 60.000 0.00 0.00 0.00 3.93
2578 6347 1.223487 GCCGTCCAATTCCTAGCCA 59.777 57.895 0.00 0.00 0.00 4.75
2579 6348 0.393808 GCCGTCCAATTCCTAGCCAA 60.394 55.000 0.00 0.00 0.00 4.52
2580 6349 1.379527 CCGTCCAATTCCTAGCCAAC 58.620 55.000 0.00 0.00 0.00 3.77
2581 6350 1.379527 CGTCCAATTCCTAGCCAACC 58.620 55.000 0.00 0.00 0.00 3.77
2582 6351 1.763968 GTCCAATTCCTAGCCAACCC 58.236 55.000 0.00 0.00 0.00 4.11
2583 6352 1.285078 GTCCAATTCCTAGCCAACCCT 59.715 52.381 0.00 0.00 0.00 4.34
2584 6353 2.000048 TCCAATTCCTAGCCAACCCTT 59.000 47.619 0.00 0.00 0.00 3.95
2585 6354 3.053917 GTCCAATTCCTAGCCAACCCTTA 60.054 47.826 0.00 0.00 0.00 2.69
2586 6355 3.053917 TCCAATTCCTAGCCAACCCTTAC 60.054 47.826 0.00 0.00 0.00 2.34
2587 6356 3.308832 CCAATTCCTAGCCAACCCTTACA 60.309 47.826 0.00 0.00 0.00 2.41
2588 6357 4.340617 CAATTCCTAGCCAACCCTTACAA 58.659 43.478 0.00 0.00 0.00 2.41
2589 6358 3.713826 TTCCTAGCCAACCCTTACAAG 57.286 47.619 0.00 0.00 0.00 3.16
2590 6359 2.627933 TCCTAGCCAACCCTTACAAGT 58.372 47.619 0.00 0.00 0.00 3.16
2591 6360 3.793712 TCCTAGCCAACCCTTACAAGTA 58.206 45.455 0.00 0.00 0.00 2.24
2592 6361 4.368067 TCCTAGCCAACCCTTACAAGTAT 58.632 43.478 0.00 0.00 0.00 2.12
2593 6362 4.407945 TCCTAGCCAACCCTTACAAGTATC 59.592 45.833 0.00 0.00 0.00 2.24
2594 6363 3.646736 AGCCAACCCTTACAAGTATCC 57.353 47.619 0.00 0.00 0.00 2.59
2595 6364 2.241430 AGCCAACCCTTACAAGTATCCC 59.759 50.000 0.00 0.00 0.00 3.85
2596 6365 2.241430 GCCAACCCTTACAAGTATCCCT 59.759 50.000 0.00 0.00 0.00 4.20
2597 6366 3.886123 CCAACCCTTACAAGTATCCCTG 58.114 50.000 0.00 0.00 0.00 4.45
2598 6367 3.371595 CCAACCCTTACAAGTATCCCTGG 60.372 52.174 0.00 0.00 0.00 4.45
2599 6368 3.502051 ACCCTTACAAGTATCCCTGGA 57.498 47.619 0.00 0.00 0.00 3.86
2600 6369 4.022359 ACCCTTACAAGTATCCCTGGAT 57.978 45.455 3.79 3.79 38.54 3.41
2601 6370 3.974642 ACCCTTACAAGTATCCCTGGATC 59.025 47.826 0.99 0.00 36.17 3.36
2602 6371 3.973973 CCCTTACAAGTATCCCTGGATCA 59.026 47.826 0.99 0.00 36.17 2.92
2603 6372 4.040952 CCCTTACAAGTATCCCTGGATCAG 59.959 50.000 0.99 0.00 36.17 2.90
2604 6373 4.656112 CCTTACAAGTATCCCTGGATCAGT 59.344 45.833 0.99 0.73 36.17 3.41
2605 6374 5.131142 CCTTACAAGTATCCCTGGATCAGTT 59.869 44.000 0.99 0.00 36.17 3.16
2606 6375 6.353082 CCTTACAAGTATCCCTGGATCAGTTT 60.353 42.308 0.99 0.00 36.17 2.66
2607 6376 7.147549 CCTTACAAGTATCCCTGGATCAGTTTA 60.148 40.741 0.99 0.00 36.17 2.01
2608 6377 6.831664 ACAAGTATCCCTGGATCAGTTTAT 57.168 37.500 0.99 0.00 36.17 1.40
2609 6378 7.931015 ACAAGTATCCCTGGATCAGTTTATA 57.069 36.000 0.99 0.00 36.17 0.98
2610 6379 8.511748 ACAAGTATCCCTGGATCAGTTTATAT 57.488 34.615 0.99 0.00 36.17 0.86
2611 6380 9.615660 ACAAGTATCCCTGGATCAGTTTATATA 57.384 33.333 0.99 0.00 36.17 0.86
2612 6381 9.877178 CAAGTATCCCTGGATCAGTTTATATAC 57.123 37.037 0.99 0.00 36.17 1.47
2613 6382 9.845214 AAGTATCCCTGGATCAGTTTATATACT 57.155 33.333 0.99 0.00 36.17 2.12
2623 6392 9.798994 GGATCAGTTTATATACTATTACACCCG 57.201 37.037 0.00 0.00 0.00 5.28
2624 6393 9.298774 GATCAGTTTATATACTATTACACCCGC 57.701 37.037 0.00 0.00 0.00 6.13
2625 6394 8.413309 TCAGTTTATATACTATTACACCCGCT 57.587 34.615 0.00 0.00 0.00 5.52
2626 6395 8.863086 TCAGTTTATATACTATTACACCCGCTT 58.137 33.333 0.00 0.00 0.00 4.68
2630 6399 9.624697 TTTATATACTATTACACCCGCTTAACG 57.375 33.333 0.00 0.00 43.15 3.18
2639 6408 2.359478 CGCTTAACGGGCCCAGTT 60.359 61.111 27.34 27.34 38.44 3.16
2640 6409 1.969589 CGCTTAACGGGCCCAGTTT 60.970 57.895 28.71 18.40 38.44 2.66
2641 6410 1.584495 GCTTAACGGGCCCAGTTTG 59.416 57.895 28.71 22.87 33.42 2.93
2642 6411 1.873270 GCTTAACGGGCCCAGTTTGG 61.873 60.000 28.71 22.53 37.25 3.28
2660 6429 2.439156 GCTAGCAAGCCACTGGGG 60.439 66.667 10.63 0.00 43.40 4.96
2662 6431 1.377725 CTAGCAAGCCACTGGGGTG 60.378 63.158 0.00 0.00 46.38 4.61
2671 6440 1.376466 CACTGGGGTGGTCTCTTGG 59.624 63.158 0.00 0.00 39.59 3.61
2672 6441 2.352805 CTGGGGTGGTCTCTTGGC 59.647 66.667 0.00 0.00 0.00 4.52
2673 6442 3.256960 TGGGGTGGTCTCTTGGCC 61.257 66.667 0.00 0.00 0.00 5.36
2674 6443 4.048470 GGGGTGGTCTCTTGGCCC 62.048 72.222 0.00 0.00 38.61 5.80
2675 6444 4.410400 GGGTGGTCTCTTGGCCCG 62.410 72.222 0.00 0.00 0.00 6.13
2676 6445 3.637273 GGTGGTCTCTTGGCCCGT 61.637 66.667 0.00 0.00 0.00 5.28
2677 6446 2.358737 GTGGTCTCTTGGCCCGTG 60.359 66.667 0.00 0.00 0.00 4.94
2678 6447 2.847234 TGGTCTCTTGGCCCGTGT 60.847 61.111 0.00 0.00 0.00 4.49
2679 6448 1.534476 TGGTCTCTTGGCCCGTGTA 60.534 57.895 0.00 0.00 0.00 2.90
2680 6449 1.218316 GGTCTCTTGGCCCGTGTAG 59.782 63.158 0.00 0.00 0.00 2.74
2681 6450 1.255667 GGTCTCTTGGCCCGTGTAGA 61.256 60.000 0.00 0.00 0.00 2.59
2682 6451 0.108756 GTCTCTTGGCCCGTGTAGAC 60.109 60.000 0.00 2.56 0.00 2.59
2683 6452 0.251653 TCTCTTGGCCCGTGTAGACT 60.252 55.000 0.00 0.00 0.00 3.24
2684 6453 0.608640 CTCTTGGCCCGTGTAGACTT 59.391 55.000 0.00 0.00 0.00 3.01
2685 6454 0.320374 TCTTGGCCCGTGTAGACTTG 59.680 55.000 0.00 0.00 0.00 3.16
2686 6455 0.673644 CTTGGCCCGTGTAGACTTGG 60.674 60.000 0.00 0.00 0.00 3.61
2687 6456 2.119484 TTGGCCCGTGTAGACTTGGG 62.119 60.000 0.00 0.00 44.88 4.12
2689 6458 2.267961 CCCGTGTAGACTTGGGCC 59.732 66.667 0.00 0.00 34.25 5.80
2690 6459 2.291043 CCCGTGTAGACTTGGGCCT 61.291 63.158 4.53 0.00 34.25 5.19
2691 6460 1.218316 CCGTGTAGACTTGGGCCTC 59.782 63.158 4.53 0.00 0.00 4.70
2692 6461 1.258445 CCGTGTAGACTTGGGCCTCT 61.258 60.000 4.53 1.37 0.00 3.69
2693 6462 0.108615 CGTGTAGACTTGGGCCTCTG 60.109 60.000 4.53 0.00 0.00 3.35
2694 6463 0.250513 GTGTAGACTTGGGCCTCTGG 59.749 60.000 4.53 0.00 0.00 3.86
2695 6464 0.178903 TGTAGACTTGGGCCTCTGGT 60.179 55.000 4.53 0.00 0.00 4.00
2696 6465 0.537653 GTAGACTTGGGCCTCTGGTC 59.462 60.000 4.53 7.79 0.00 4.02
2702 6471 2.671682 GGGCCTCTGGTCCTTGAC 59.328 66.667 0.84 0.00 45.53 3.18
2703 6472 2.266055 GGCCTCTGGTCCTTGACG 59.734 66.667 0.00 0.00 32.65 4.35
2704 6473 2.584391 GGCCTCTGGTCCTTGACGT 61.584 63.158 0.00 0.00 32.65 4.34
2705 6474 1.374758 GCCTCTGGTCCTTGACGTG 60.375 63.158 0.00 0.00 32.65 4.49
2706 6475 1.374758 CCTCTGGTCCTTGACGTGC 60.375 63.158 0.00 0.00 32.65 5.34
2707 6476 1.668294 CTCTGGTCCTTGACGTGCT 59.332 57.895 0.00 0.00 32.65 4.40
2708 6477 0.389166 CTCTGGTCCTTGACGTGCTC 60.389 60.000 0.00 0.00 32.65 4.26
2709 6478 0.827925 TCTGGTCCTTGACGTGCTCT 60.828 55.000 0.00 0.00 32.65 4.09
2710 6479 0.668706 CTGGTCCTTGACGTGCTCTG 60.669 60.000 0.00 0.00 32.65 3.35
2711 6480 1.374758 GGTCCTTGACGTGCTCTGG 60.375 63.158 0.00 0.00 32.65 3.86
2712 6481 1.666011 GTCCTTGACGTGCTCTGGA 59.334 57.895 0.00 0.00 0.00 3.86
2713 6482 0.247736 GTCCTTGACGTGCTCTGGAT 59.752 55.000 0.00 0.00 0.00 3.41
2714 6483 0.532573 TCCTTGACGTGCTCTGGATC 59.467 55.000 0.00 0.00 0.00 3.36
2715 6484 0.803768 CCTTGACGTGCTCTGGATCG 60.804 60.000 0.00 0.00 0.00 3.69
2716 6485 1.416813 CTTGACGTGCTCTGGATCGC 61.417 60.000 0.00 0.00 0.00 4.58
2717 6486 1.877576 TTGACGTGCTCTGGATCGCT 61.878 55.000 0.00 0.00 0.00 4.93
2718 6487 1.875813 GACGTGCTCTGGATCGCTG 60.876 63.158 0.00 0.00 0.00 5.18
2719 6488 2.182791 CGTGCTCTGGATCGCTGT 59.817 61.111 0.00 0.00 0.00 4.40
2720 6489 1.446792 CGTGCTCTGGATCGCTGTT 60.447 57.895 0.00 0.00 0.00 3.16
2721 6490 1.690283 CGTGCTCTGGATCGCTGTTG 61.690 60.000 0.00 0.00 0.00 3.33
2722 6491 1.742880 TGCTCTGGATCGCTGTTGC 60.743 57.895 0.00 0.00 0.00 4.17
2723 6492 2.467826 GCTCTGGATCGCTGTTGCC 61.468 63.158 0.00 0.00 35.36 4.52
2724 6493 2.125552 TCTGGATCGCTGTTGCCG 60.126 61.111 0.00 0.00 35.36 5.69
2725 6494 3.197790 CTGGATCGCTGTTGCCGG 61.198 66.667 0.00 0.00 35.36 6.13
2728 6497 3.430862 GATCGCTGTTGCCGGCAA 61.431 61.111 37.30 37.30 43.56 4.52
2740 6509 3.197790 CGGCAACCGCTGGATCAG 61.198 66.667 0.00 0.00 41.17 2.90
2752 6521 3.331478 CTGGATCAGCTATAGGGCTTG 57.669 52.381 1.04 0.00 41.00 4.01
2753 6522 1.980765 TGGATCAGCTATAGGGCTTGG 59.019 52.381 1.04 0.00 41.00 3.61
2754 6523 1.339535 GGATCAGCTATAGGGCTTGGC 60.340 57.143 1.04 0.00 41.00 4.52
2755 6524 0.322975 ATCAGCTATAGGGCTTGGCG 59.677 55.000 1.04 0.00 41.00 5.69
2756 6525 1.963338 CAGCTATAGGGCTTGGCGC 60.963 63.158 0.00 0.00 41.00 6.53
2766 6535 4.399395 CTTGGCGCTCCTCCTGCA 62.399 66.667 7.64 0.00 0.00 4.41
2767 6536 4.399395 TTGGCGCTCCTCCTGCAG 62.399 66.667 7.64 6.78 0.00 4.41
2770 6539 3.461773 GCGCTCCTCCTGCAGGTA 61.462 66.667 31.58 17.41 43.95 3.08
2771 6540 2.496817 CGCTCCTCCTGCAGGTAC 59.503 66.667 31.58 16.11 43.95 3.34
2772 6541 2.351244 CGCTCCTCCTGCAGGTACA 61.351 63.158 31.58 12.65 43.95 2.90
2773 6542 1.680522 CGCTCCTCCTGCAGGTACAT 61.681 60.000 31.58 0.00 43.95 2.29
2774 6543 0.179062 GCTCCTCCTGCAGGTACATG 60.179 60.000 31.58 18.99 43.95 3.21
2775 6544 0.467384 CTCCTCCTGCAGGTACATGG 59.533 60.000 31.58 23.56 43.95 3.66
2776 6545 0.982852 TCCTCCTGCAGGTACATGGG 60.983 60.000 31.58 21.92 43.95 4.00
2777 6546 1.153086 CTCCTGCAGGTACATGGGC 60.153 63.158 31.58 0.00 36.34 5.36
2778 6547 1.616327 TCCTGCAGGTACATGGGCT 60.616 57.895 31.58 0.00 36.34 5.19
2779 6548 0.326143 TCCTGCAGGTACATGGGCTA 60.326 55.000 31.58 5.96 36.34 3.93
2780 6549 0.179045 CCTGCAGGTACATGGGCTAC 60.179 60.000 25.53 0.00 0.00 3.58
2781 6550 0.541392 CTGCAGGTACATGGGCTACA 59.459 55.000 9.91 0.00 0.00 2.74
2782 6551 0.541392 TGCAGGTACATGGGCTACAG 59.459 55.000 9.91 0.00 0.00 2.74
2783 6552 0.179045 GCAGGTACATGGGCTACAGG 60.179 60.000 9.91 0.00 36.81 4.00
2784 6553 0.469917 CAGGTACATGGGCTACAGGG 59.530 60.000 0.00 0.00 34.56 4.45
2785 6554 1.148498 GGTACATGGGCTACAGGGC 59.852 63.158 0.00 0.00 34.56 5.19
2786 6555 1.345715 GGTACATGGGCTACAGGGCT 61.346 60.000 0.00 0.00 40.65 5.19
2787 6556 0.179045 GTACATGGGCTACAGGGCTG 60.179 60.000 0.00 0.00 40.65 4.85
2788 6557 1.983119 TACATGGGCTACAGGGCTGC 61.983 60.000 0.00 0.00 40.65 5.25
2789 6558 2.693864 ATGGGCTACAGGGCTGCT 60.694 61.111 0.00 0.00 40.65 4.24
2790 6559 3.052909 ATGGGCTACAGGGCTGCTG 62.053 63.158 0.00 0.00 40.65 4.41
2791 6560 3.402681 GGGCTACAGGGCTGCTGA 61.403 66.667 0.00 0.00 40.65 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.692681 ACTCACAAATTTGAGAAATGTTCACG 59.307 34.615 24.64 9.16 45.19 4.35
204 210 7.095899 GCAAGATTCAAAAAGGTTCACTCATTC 60.096 37.037 0.00 0.00 0.00 2.67
205 211 6.703165 GCAAGATTCAAAAAGGTTCACTCATT 59.297 34.615 0.00 0.00 0.00 2.57
207 213 5.126869 TGCAAGATTCAAAAAGGTTCACTCA 59.873 36.000 0.00 0.00 0.00 3.41
208 214 5.591099 TGCAAGATTCAAAAAGGTTCACTC 58.409 37.500 0.00 0.00 0.00 3.51
209 215 5.596836 TGCAAGATTCAAAAAGGTTCACT 57.403 34.783 0.00 0.00 0.00 3.41
210 216 6.313658 AGTTTGCAAGATTCAAAAAGGTTCAC 59.686 34.615 0.00 0.00 35.49 3.18
212 218 6.908870 AGTTTGCAAGATTCAAAAAGGTTC 57.091 33.333 0.00 0.00 35.49 3.62
290 297 7.469537 TGGGTCTTCACTAAACTTTGAAAAA 57.530 32.000 0.00 0.00 31.41 1.94
291 298 7.317390 GTTGGGTCTTCACTAAACTTTGAAAA 58.683 34.615 0.00 0.00 31.41 2.29
292 299 6.127563 GGTTGGGTCTTCACTAAACTTTGAAA 60.128 38.462 0.00 0.00 31.41 2.69
293 300 5.358725 GGTTGGGTCTTCACTAAACTTTGAA 59.641 40.000 0.00 0.00 0.00 2.69
294 301 4.885325 GGTTGGGTCTTCACTAAACTTTGA 59.115 41.667 0.00 0.00 0.00 2.69
295 302 4.887655 AGGTTGGGTCTTCACTAAACTTTG 59.112 41.667 0.00 0.00 0.00 2.77
296 303 4.887655 CAGGTTGGGTCTTCACTAAACTTT 59.112 41.667 0.00 0.00 0.00 2.66
297 304 4.079958 ACAGGTTGGGTCTTCACTAAACTT 60.080 41.667 0.00 0.00 0.00 2.66
298 305 3.458487 ACAGGTTGGGTCTTCACTAAACT 59.542 43.478 0.00 0.00 0.00 2.66
299 306 3.816994 ACAGGTTGGGTCTTCACTAAAC 58.183 45.455 0.00 0.00 0.00 2.01
300 307 5.836024 ATACAGGTTGGGTCTTCACTAAA 57.164 39.130 0.00 0.00 0.00 1.85
301 308 5.546499 AGAATACAGGTTGGGTCTTCACTAA 59.454 40.000 0.00 0.00 0.00 2.24
302 309 5.091552 AGAATACAGGTTGGGTCTTCACTA 58.908 41.667 0.00 0.00 0.00 2.74
303 310 3.910627 AGAATACAGGTTGGGTCTTCACT 59.089 43.478 0.00 0.00 0.00 3.41
304 311 4.287766 AGAATACAGGTTGGGTCTTCAC 57.712 45.455 0.00 0.00 0.00 3.18
305 312 4.993705 AAGAATACAGGTTGGGTCTTCA 57.006 40.909 0.00 0.00 0.00 3.02
306 313 5.313712 TGAAAGAATACAGGTTGGGTCTTC 58.686 41.667 0.00 0.00 0.00 2.87
377 385 9.841880 CCAAGATGATATCAAAATGATGCTTAG 57.158 33.333 9.99 0.00 37.70 2.18
427 435 7.201705 GGTCGCTAGAGGCAGTATTTTATTTTT 60.202 37.037 0.00 0.00 41.91 1.94
432 440 3.702548 TGGTCGCTAGAGGCAGTATTTTA 59.297 43.478 0.00 0.00 41.91 1.52
461 469 4.986645 AGCACGACCGCATGCACA 62.987 61.111 19.57 0.00 44.59 4.57
462 470 4.152625 GAGCACGACCGCATGCAC 62.153 66.667 19.57 7.45 44.59 4.57
463 471 4.678499 TGAGCACGACCGCATGCA 62.678 61.111 19.57 0.00 44.59 3.96
529 537 8.323854 CGTATTCTAATTATTGATGATCTGCGG 58.676 37.037 0.00 0.00 0.00 5.69
577 585 7.850003 CAGCTCAAAAGAAAATATCTAGCTTCG 59.150 37.037 0.00 0.00 41.47 3.79
618 962 2.277084 ACAAACTGTCAACTCACGGTC 58.723 47.619 0.00 0.00 34.60 4.79
619 963 2.396590 ACAAACTGTCAACTCACGGT 57.603 45.000 0.00 0.00 37.49 4.83
620 964 5.418310 AATAACAAACTGTCAACTCACGG 57.582 39.130 0.00 0.00 0.00 4.94
621 965 6.482835 TCAAATAACAAACTGTCAACTCACG 58.517 36.000 0.00 0.00 0.00 4.35
622 966 8.856490 AATCAAATAACAAACTGTCAACTCAC 57.144 30.769 0.00 0.00 0.00 3.51
623 967 9.868277 AAAATCAAATAACAAACTGTCAACTCA 57.132 25.926 0.00 0.00 0.00 3.41
632 976 4.742659 ACGCGCAAAATCAAATAACAAACT 59.257 33.333 5.73 0.00 0.00 2.66
645 989 6.075624 CGAAAATCATATGTAACGCGCAAAAT 60.076 34.615 5.73 0.00 0.00 1.82
646 990 5.226154 CGAAAATCATATGTAACGCGCAAAA 59.774 36.000 5.73 0.00 0.00 2.44
647 991 4.726229 CGAAAATCATATGTAACGCGCAAA 59.274 37.500 5.73 0.00 0.00 3.68
687 1031 6.519353 TGATATATTCAAACTACAACGGCG 57.481 37.500 4.80 4.80 0.00 6.46
690 1034 8.352752 TGAGCTGATATATTCAAACTACAACG 57.647 34.615 0.00 0.00 32.78 4.10
730 1074 0.380378 TGCGCACTTTGAACTCCAAC 59.620 50.000 5.66 0.00 33.85 3.77
736 1080 0.941542 TACTGGTGCGCACTTTGAAC 59.058 50.000 36.84 21.14 0.00 3.18
756 1100 3.614176 CGAAATCTGAAGCACGAGAATGA 59.386 43.478 0.00 0.00 0.00 2.57
788 1132 8.635877 ACACGCATAAACAAACATTTTCTTAA 57.364 26.923 0.00 0.00 0.00 1.85
792 1136 6.503616 TGACACGCATAAACAAACATTTTC 57.496 33.333 0.00 0.00 0.00 2.29
797 1141 3.565902 TGGATGACACGCATAAACAAACA 59.434 39.130 0.00 0.00 37.34 2.83
798 1142 4.083537 TCTGGATGACACGCATAAACAAAC 60.084 41.667 0.00 0.00 37.34 2.93
799 1143 4.068599 TCTGGATGACACGCATAAACAAA 58.931 39.130 0.00 0.00 37.34 2.83
823 1167 9.228636 GCACGTATCCGAAACAAATTATTTTAT 57.771 29.630 0.00 0.00 37.88 1.40
824 1168 8.452534 AGCACGTATCCGAAACAAATTATTTTA 58.547 29.630 0.00 0.00 37.88 1.52
825 1169 7.309920 AGCACGTATCCGAAACAAATTATTTT 58.690 30.769 0.00 0.00 37.88 1.82
826 1170 6.848451 AGCACGTATCCGAAACAAATTATTT 58.152 32.000 0.00 0.00 37.88 1.40
827 1171 6.431198 AGCACGTATCCGAAACAAATTATT 57.569 33.333 0.00 0.00 37.88 1.40
828 1172 6.255215 CAAGCACGTATCCGAAACAAATTAT 58.745 36.000 0.00 0.00 37.88 1.28
829 1173 5.623335 CAAGCACGTATCCGAAACAAATTA 58.377 37.500 0.00 0.00 37.88 1.40
832 1183 2.350007 GCAAGCACGTATCCGAAACAAA 60.350 45.455 0.00 0.00 37.88 2.83
910 1295 1.972198 CCAGGCACGTAGAGGAACA 59.028 57.895 0.00 0.00 0.00 3.18
981 1366 4.343526 TGCATTTTATTTGTCACAGTGGGT 59.656 37.500 0.00 0.00 0.00 4.51
1127 1512 1.593196 CCGATTCCCGTGTATTGCAT 58.407 50.000 0.00 0.00 36.31 3.96
1596 1985 1.299648 CCTGGAAACATCGCCTCCA 59.700 57.895 0.00 0.00 41.51 3.86
1677 2066 0.736325 ACGGCGACATTACTGAGTGC 60.736 55.000 16.62 0.00 0.00 4.40
1710 2099 4.353437 GGACTGTCCGGCGTCGTT 62.353 66.667 11.71 0.00 33.95 3.85
1727 2116 3.374058 AGGCGAACTTGACCGAAATATTG 59.626 43.478 0.00 0.00 0.00 1.90
1731 2120 1.804748 GAAGGCGAACTTGACCGAAAT 59.195 47.619 0.00 0.00 40.21 2.17
1841 2233 2.305635 TGCTGGTCCATTTGAAGAGCTA 59.694 45.455 0.00 0.00 32.87 3.32
2156 2567 2.422214 GGGAGGGGGAGGGGATAGT 61.422 68.421 0.00 0.00 0.00 2.12
2189 2600 1.474077 GGTACCGTGACTGGTTACGAT 59.526 52.381 17.28 5.02 43.95 3.73
2276 2687 0.600557 TACATGGTTTTGCAAGCCGG 59.399 50.000 14.68 0.00 0.00 6.13
2290 2701 2.921821 TGATGTGGTGGATGCTACATG 58.078 47.619 6.96 0.00 39.99 3.21
2291 2702 3.393609 AGATGATGTGGTGGATGCTACAT 59.606 43.478 0.00 0.00 42.05 2.29
2292 2703 2.773661 AGATGATGTGGTGGATGCTACA 59.226 45.455 0.00 0.00 34.47 2.74
2293 2704 3.482156 AGATGATGTGGTGGATGCTAC 57.518 47.619 0.00 0.00 0.00 3.58
2294 2705 3.713248 AGAAGATGATGTGGTGGATGCTA 59.287 43.478 0.00 0.00 0.00 3.49
2296 2707 2.877168 GAGAAGATGATGTGGTGGATGC 59.123 50.000 0.00 0.00 0.00 3.91
2297 2708 3.129109 CGAGAAGATGATGTGGTGGATG 58.871 50.000 0.00 0.00 0.00 3.51
2298 2709 2.484417 GCGAGAAGATGATGTGGTGGAT 60.484 50.000 0.00 0.00 0.00 3.41
2315 6083 2.661537 TGTGCGACAACCAGCGAG 60.662 61.111 0.00 0.00 35.87 5.03
2318 6087 1.207593 GATGTGTGCGACAACCAGC 59.792 57.895 0.00 0.00 38.36 4.85
2320 6089 0.032267 TACGATGTGTGCGACAACCA 59.968 50.000 0.00 0.00 38.36 3.67
2332 6101 1.068474 GCAACTTGACGCTACGATGT 58.932 50.000 0.00 0.00 0.00 3.06
2346 6115 3.650950 ACCCGATGGCAGGCAACT 61.651 61.111 0.00 0.00 41.92 3.16
2354 6123 3.323758 TACCAGTGCACCCGATGGC 62.324 63.158 19.75 0.00 36.21 4.40
2369 6138 3.335306 TTGCAATTGCGGCGCTACC 62.335 57.895 33.26 17.02 45.83 3.18
2370 6139 2.152078 GTTGCAATTGCGGCGCTAC 61.152 57.895 33.26 17.05 45.83 3.58
2380 6149 3.705604 GCAATATGTAGGCGTTGCAATT 58.294 40.909 0.59 0.00 44.63 2.32
2384 6153 1.597937 GCTGCAATATGTAGGCGTTGC 60.598 52.381 0.00 2.25 45.27 4.17
2388 6157 2.145536 TGATGCTGCAATATGTAGGCG 58.854 47.619 6.36 0.00 30.40 5.52
2432 6201 2.744760 AGCTAGCAAGAGTGATCCTCA 58.255 47.619 18.83 0.00 43.12 3.86
2433 6202 4.321899 CCATAGCTAGCAAGAGTGATCCTC 60.322 50.000 18.83 3.70 40.80 3.71
2434 6203 3.577848 CCATAGCTAGCAAGAGTGATCCT 59.422 47.826 18.83 0.00 0.00 3.24
2435 6204 3.576118 TCCATAGCTAGCAAGAGTGATCC 59.424 47.826 18.83 0.00 0.00 3.36
2436 6205 4.862902 TCCATAGCTAGCAAGAGTGATC 57.137 45.455 18.83 0.00 0.00 2.92
2437 6206 5.047164 CAGATCCATAGCTAGCAAGAGTGAT 60.047 44.000 18.83 10.46 0.00 3.06
2438 6207 4.280425 CAGATCCATAGCTAGCAAGAGTGA 59.720 45.833 18.83 5.85 0.00 3.41
2439 6208 4.280425 TCAGATCCATAGCTAGCAAGAGTG 59.720 45.833 18.83 7.58 0.00 3.51
2440 6209 4.478203 TCAGATCCATAGCTAGCAAGAGT 58.522 43.478 18.83 0.00 0.00 3.24
2441 6210 4.766373 TCTCAGATCCATAGCTAGCAAGAG 59.234 45.833 18.83 9.63 0.00 2.85
2442 6211 4.734266 TCTCAGATCCATAGCTAGCAAGA 58.266 43.478 18.83 7.95 0.00 3.02
2443 6212 4.523943 ACTCTCAGATCCATAGCTAGCAAG 59.476 45.833 18.83 5.78 0.00 4.01
2444 6213 4.478203 ACTCTCAGATCCATAGCTAGCAA 58.522 43.478 18.83 0.00 0.00 3.91
2445 6214 4.111255 ACTCTCAGATCCATAGCTAGCA 57.889 45.455 18.83 3.19 0.00 3.49
2446 6215 5.010516 TGAAACTCTCAGATCCATAGCTAGC 59.989 44.000 6.62 6.62 0.00 3.42
2447 6216 6.647334 TGAAACTCTCAGATCCATAGCTAG 57.353 41.667 0.00 0.00 0.00 3.42
2448 6217 6.014755 CCATGAAACTCTCAGATCCATAGCTA 60.015 42.308 0.00 0.00 37.52 3.32
2449 6218 5.221682 CCATGAAACTCTCAGATCCATAGCT 60.222 44.000 0.00 0.00 37.52 3.32
2450 6219 4.996122 CCATGAAACTCTCAGATCCATAGC 59.004 45.833 0.00 0.00 37.52 2.97
2451 6220 5.512749 CCCCATGAAACTCTCAGATCCATAG 60.513 48.000 0.00 0.00 37.52 2.23
2452 6221 4.349048 CCCCATGAAACTCTCAGATCCATA 59.651 45.833 0.00 0.00 37.52 2.74
2453 6222 3.137913 CCCCATGAAACTCTCAGATCCAT 59.862 47.826 0.00 0.00 37.52 3.41
2454 6223 2.507058 CCCCATGAAACTCTCAGATCCA 59.493 50.000 0.00 0.00 37.52 3.41
2455 6224 2.774234 TCCCCATGAAACTCTCAGATCC 59.226 50.000 0.00 0.00 37.52 3.36
2456 6225 4.703379 ATCCCCATGAAACTCTCAGATC 57.297 45.455 0.00 0.00 37.52 2.75
2457 6226 4.444022 CGAATCCCCATGAAACTCTCAGAT 60.444 45.833 0.00 0.00 37.52 2.90
2458 6227 3.118629 CGAATCCCCATGAAACTCTCAGA 60.119 47.826 0.00 0.00 37.52 3.27
2459 6228 3.118629 TCGAATCCCCATGAAACTCTCAG 60.119 47.826 0.00 0.00 37.52 3.35
2460 6229 2.837591 TCGAATCCCCATGAAACTCTCA 59.162 45.455 0.00 0.00 38.81 3.27
2461 6230 3.462021 CTCGAATCCCCATGAAACTCTC 58.538 50.000 0.00 0.00 0.00 3.20
2462 6231 2.420687 GCTCGAATCCCCATGAAACTCT 60.421 50.000 0.00 0.00 0.00 3.24
2463 6232 1.943340 GCTCGAATCCCCATGAAACTC 59.057 52.381 0.00 0.00 0.00 3.01
2464 6233 1.561542 AGCTCGAATCCCCATGAAACT 59.438 47.619 0.00 0.00 0.00 2.66
2465 6234 2.044123 AGCTCGAATCCCCATGAAAC 57.956 50.000 0.00 0.00 0.00 2.78
2466 6235 3.454447 TCTTAGCTCGAATCCCCATGAAA 59.546 43.478 0.00 0.00 0.00 2.69
2467 6236 3.038280 TCTTAGCTCGAATCCCCATGAA 58.962 45.455 0.00 0.00 0.00 2.57
2468 6237 2.677914 TCTTAGCTCGAATCCCCATGA 58.322 47.619 0.00 0.00 0.00 3.07
2469 6238 3.692257 ATCTTAGCTCGAATCCCCATG 57.308 47.619 0.00 0.00 0.00 3.66
2470 6239 6.013379 TCAAATATCTTAGCTCGAATCCCCAT 60.013 38.462 0.00 0.00 0.00 4.00
2471 6240 5.306937 TCAAATATCTTAGCTCGAATCCCCA 59.693 40.000 0.00 0.00 0.00 4.96
2472 6241 5.794894 TCAAATATCTTAGCTCGAATCCCC 58.205 41.667 0.00 0.00 0.00 4.81
2473 6242 7.913674 ATTCAAATATCTTAGCTCGAATCCC 57.086 36.000 0.00 0.00 0.00 3.85
2474 6243 9.818796 GAAATTCAAATATCTTAGCTCGAATCC 57.181 33.333 0.00 0.00 0.00 3.01
2475 6244 9.522454 CGAAATTCAAATATCTTAGCTCGAATC 57.478 33.333 0.00 0.00 0.00 2.52
2476 6245 8.499162 CCGAAATTCAAATATCTTAGCTCGAAT 58.501 33.333 0.00 0.00 0.00 3.34
2477 6246 7.709182 TCCGAAATTCAAATATCTTAGCTCGAA 59.291 33.333 0.00 0.00 0.00 3.71
2478 6247 7.207383 TCCGAAATTCAAATATCTTAGCTCGA 58.793 34.615 0.00 0.00 0.00 4.04
2479 6248 7.408132 TCCGAAATTCAAATATCTTAGCTCG 57.592 36.000 0.00 0.00 0.00 5.03
2480 6249 8.993121 TCATCCGAAATTCAAATATCTTAGCTC 58.007 33.333 0.00 0.00 0.00 4.09
2481 6250 8.908786 TCATCCGAAATTCAAATATCTTAGCT 57.091 30.769 0.00 0.00 0.00 3.32
2482 6251 8.233190 CCTCATCCGAAATTCAAATATCTTAGC 58.767 37.037 0.00 0.00 0.00 3.09
2483 6252 9.494271 TCCTCATCCGAAATTCAAATATCTTAG 57.506 33.333 0.00 0.00 0.00 2.18
2485 6254 8.930846 ATCCTCATCCGAAATTCAAATATCTT 57.069 30.769 0.00 0.00 0.00 2.40
2486 6255 8.930846 AATCCTCATCCGAAATTCAAATATCT 57.069 30.769 0.00 0.00 0.00 1.98
2487 6256 8.239998 GGAATCCTCATCCGAAATTCAAATATC 58.760 37.037 0.00 0.00 30.32 1.63
2488 6257 7.946776 AGGAATCCTCATCCGAAATTCAAATAT 59.053 33.333 0.00 0.00 42.03 1.28
2489 6258 7.290061 AGGAATCCTCATCCGAAATTCAAATA 58.710 34.615 0.00 0.00 42.03 1.40
2490 6259 6.131961 AGGAATCCTCATCCGAAATTCAAAT 58.868 36.000 0.00 0.00 42.03 2.32
2491 6260 5.509498 AGGAATCCTCATCCGAAATTCAAA 58.491 37.500 0.00 0.00 42.03 2.69
2492 6261 5.116084 AGGAATCCTCATCCGAAATTCAA 57.884 39.130 0.00 0.00 42.03 2.69
2493 6262 4.778213 AGGAATCCTCATCCGAAATTCA 57.222 40.909 0.00 0.00 42.03 2.57
2506 6275 2.003548 GGTGGCTGGGAGGAATCCT 61.004 63.158 0.00 0.00 36.03 3.24
2507 6276 2.597903 GGTGGCTGGGAGGAATCC 59.402 66.667 0.00 0.00 0.00 3.01
2508 6277 2.597903 GGGTGGCTGGGAGGAATC 59.402 66.667 0.00 0.00 0.00 2.52
2509 6278 3.411517 CGGGTGGCTGGGAGGAAT 61.412 66.667 0.00 0.00 0.00 3.01
2517 6286 2.650813 GATAGAGGTGCGGGTGGCTG 62.651 65.000 0.00 0.00 44.05 4.85
2518 6287 2.365635 ATAGAGGTGCGGGTGGCT 60.366 61.111 0.00 0.00 44.05 4.75
2519 6288 2.109181 GATAGAGGTGCGGGTGGC 59.891 66.667 0.00 0.00 43.96 5.01
2520 6289 1.330655 ACAGATAGAGGTGCGGGTGG 61.331 60.000 0.00 0.00 0.00 4.61
2521 6290 0.537188 AACAGATAGAGGTGCGGGTG 59.463 55.000 0.00 0.00 0.00 4.61
2522 6291 0.824759 GAACAGATAGAGGTGCGGGT 59.175 55.000 0.00 0.00 0.00 5.28
2523 6292 0.824109 TGAACAGATAGAGGTGCGGG 59.176 55.000 0.00 0.00 0.00 6.13
2524 6293 2.271800 GTTGAACAGATAGAGGTGCGG 58.728 52.381 0.00 0.00 0.00 5.69
2525 6294 2.271800 GGTTGAACAGATAGAGGTGCG 58.728 52.381 0.00 0.00 0.00 5.34
2526 6295 2.094182 TCGGTTGAACAGATAGAGGTGC 60.094 50.000 0.00 0.00 0.00 5.01
2527 6296 3.775202 CTCGGTTGAACAGATAGAGGTG 58.225 50.000 0.00 0.00 0.00 4.00
2528 6297 2.166664 GCTCGGTTGAACAGATAGAGGT 59.833 50.000 0.00 0.00 0.00 3.85
2529 6298 2.482142 GGCTCGGTTGAACAGATAGAGG 60.482 54.545 0.00 0.00 0.00 3.69
2530 6299 2.796383 CGGCTCGGTTGAACAGATAGAG 60.796 54.545 0.00 0.02 0.00 2.43
2531 6300 1.134367 CGGCTCGGTTGAACAGATAGA 59.866 52.381 0.00 0.00 0.00 1.98
2532 6301 1.560923 CGGCTCGGTTGAACAGATAG 58.439 55.000 0.00 0.00 0.00 2.08
2533 6302 0.459585 GCGGCTCGGTTGAACAGATA 60.460 55.000 0.00 0.00 0.00 1.98
2534 6303 1.741770 GCGGCTCGGTTGAACAGAT 60.742 57.895 0.00 0.00 0.00 2.90
2535 6304 2.357034 GCGGCTCGGTTGAACAGA 60.357 61.111 0.00 0.00 0.00 3.41
2536 6305 3.777925 CGCGGCTCGGTTGAACAG 61.778 66.667 0.00 0.00 33.78 3.16
2554 6323 4.179579 GAATTGGACGGCTGCGGC 62.180 66.667 9.72 9.72 37.82 6.53
2555 6324 2.587322 TAGGAATTGGACGGCTGCGG 62.587 60.000 5.60 5.60 0.00 5.69
2556 6325 1.153449 TAGGAATTGGACGGCTGCG 60.153 57.895 0.00 0.00 0.00 5.18
2557 6326 1.440145 GCTAGGAATTGGACGGCTGC 61.440 60.000 0.00 0.00 0.00 5.25
2558 6327 0.815615 GGCTAGGAATTGGACGGCTG 60.816 60.000 0.00 0.00 0.00 4.85
2559 6328 1.271840 TGGCTAGGAATTGGACGGCT 61.272 55.000 0.00 0.00 0.00 5.52
2560 6329 0.393808 TTGGCTAGGAATTGGACGGC 60.394 55.000 0.00 0.00 0.00 5.68
2561 6330 1.379527 GTTGGCTAGGAATTGGACGG 58.620 55.000 0.00 0.00 0.00 4.79
2562 6331 1.379527 GGTTGGCTAGGAATTGGACG 58.620 55.000 0.00 0.00 0.00 4.79
2563 6332 1.285078 AGGGTTGGCTAGGAATTGGAC 59.715 52.381 0.00 0.00 0.00 4.02
2564 6333 1.681229 AGGGTTGGCTAGGAATTGGA 58.319 50.000 0.00 0.00 0.00 3.53
2565 6334 2.532250 AAGGGTTGGCTAGGAATTGG 57.468 50.000 0.00 0.00 0.00 3.16
2566 6335 3.963129 TGTAAGGGTTGGCTAGGAATTG 58.037 45.455 0.00 0.00 0.00 2.32
2567 6336 4.044191 ACTTGTAAGGGTTGGCTAGGAATT 59.956 41.667 0.00 0.00 0.00 2.17
2568 6337 3.591977 ACTTGTAAGGGTTGGCTAGGAAT 59.408 43.478 0.00 0.00 0.00 3.01
2569 6338 2.983898 ACTTGTAAGGGTTGGCTAGGAA 59.016 45.455 0.00 0.00 0.00 3.36
2570 6339 2.627933 ACTTGTAAGGGTTGGCTAGGA 58.372 47.619 0.00 0.00 0.00 2.94
2571 6340 4.444449 GGATACTTGTAAGGGTTGGCTAGG 60.444 50.000 0.00 0.00 0.00 3.02
2572 6341 4.444449 GGGATACTTGTAAGGGTTGGCTAG 60.444 50.000 0.00 0.00 0.00 3.42
2573 6342 3.457012 GGGATACTTGTAAGGGTTGGCTA 59.543 47.826 0.00 0.00 0.00 3.93
2574 6343 2.241430 GGGATACTTGTAAGGGTTGGCT 59.759 50.000 0.00 0.00 0.00 4.75
2575 6344 2.241430 AGGGATACTTGTAAGGGTTGGC 59.759 50.000 0.00 0.00 0.00 4.52
2576 6345 3.371595 CCAGGGATACTTGTAAGGGTTGG 60.372 52.174 0.00 0.00 43.35 3.77
2577 6346 3.521937 TCCAGGGATACTTGTAAGGGTTG 59.478 47.826 0.00 0.00 43.35 3.77
2578 6347 3.810623 TCCAGGGATACTTGTAAGGGTT 58.189 45.455 0.00 0.00 43.35 4.11
2579 6348 3.502051 TCCAGGGATACTTGTAAGGGT 57.498 47.619 0.00 0.00 43.35 4.34
2580 6349 3.973973 TGATCCAGGGATACTTGTAAGGG 59.026 47.826 0.00 0.00 43.35 3.95
2581 6350 4.656112 ACTGATCCAGGGATACTTGTAAGG 59.344 45.833 0.00 0.00 43.35 2.69
2582 6351 5.878406 ACTGATCCAGGGATACTTGTAAG 57.122 43.478 0.00 0.00 43.35 2.34
2583 6352 6.636454 AAACTGATCCAGGGATACTTGTAA 57.364 37.500 0.00 0.00 43.35 2.41
2584 6353 7.931015 ATAAACTGATCCAGGGATACTTGTA 57.069 36.000 0.00 0.00 43.35 2.41
2585 6354 6.831664 ATAAACTGATCCAGGGATACTTGT 57.168 37.500 0.00 0.00 43.35 3.16
2586 6355 9.877178 GTATATAAACTGATCCAGGGATACTTG 57.123 37.037 0.00 0.00 44.74 3.16
2587 6356 9.845214 AGTATATAAACTGATCCAGGGATACTT 57.155 33.333 0.00 0.00 35.51 2.24
2597 6366 9.798994 CGGGTGTAATAGTATATAAACTGATCC 57.201 37.037 0.00 0.00 0.00 3.36
2598 6367 9.298774 GCGGGTGTAATAGTATATAAACTGATC 57.701 37.037 0.00 0.00 0.00 2.92
2599 6368 9.032624 AGCGGGTGTAATAGTATATAAACTGAT 57.967 33.333 0.00 0.00 0.00 2.90
2600 6369 8.413309 AGCGGGTGTAATAGTATATAAACTGA 57.587 34.615 0.00 0.00 0.00 3.41
2604 6373 9.624697 CGTTAAGCGGGTGTAATAGTATATAAA 57.375 33.333 0.00 0.00 36.85 1.40
2622 6391 1.969589 AAACTGGGCCCGTTAAGCG 60.970 57.895 25.58 8.56 40.95 4.68
2623 6392 1.584495 CAAACTGGGCCCGTTAAGC 59.416 57.895 25.58 0.00 0.00 3.09
2624 6393 2.263153 CCAAACTGGGCCCGTTAAG 58.737 57.895 25.58 20.93 32.67 1.85
2625 6394 4.504112 CCAAACTGGGCCCGTTAA 57.496 55.556 25.58 5.93 32.67 2.01
2634 6403 1.885871 GCTTGCTAGCCCAAACTGG 59.114 57.895 13.29 0.00 41.74 4.00
2644 6413 1.377725 CACCCCAGTGGCTTGCTAG 60.378 63.158 2.61 0.00 40.55 3.42
2645 6414 2.756400 CACCCCAGTGGCTTGCTA 59.244 61.111 2.61 0.00 40.55 3.49
2653 6422 1.376466 CCAAGAGACCACCCCAGTG 59.624 63.158 0.00 0.00 44.12 3.66
2654 6423 2.529744 GCCAAGAGACCACCCCAGT 61.530 63.158 0.00 0.00 0.00 4.00
2655 6424 2.352805 GCCAAGAGACCACCCCAG 59.647 66.667 0.00 0.00 0.00 4.45
2656 6425 3.256960 GGCCAAGAGACCACCCCA 61.257 66.667 0.00 0.00 0.00 4.96
2657 6426 4.048470 GGGCCAAGAGACCACCCC 62.048 72.222 4.39 0.00 34.23 4.95
2658 6427 4.410400 CGGGCCAAGAGACCACCC 62.410 72.222 4.39 0.00 37.19 4.61
2659 6428 3.637273 ACGGGCCAAGAGACCACC 61.637 66.667 4.39 0.00 0.00 4.61
2660 6429 1.823169 TACACGGGCCAAGAGACCAC 61.823 60.000 4.39 0.00 0.00 4.16
2661 6430 1.534476 TACACGGGCCAAGAGACCA 60.534 57.895 4.39 0.00 0.00 4.02
2662 6431 1.218316 CTACACGGGCCAAGAGACC 59.782 63.158 4.39 0.00 0.00 3.85
2663 6432 0.108756 GTCTACACGGGCCAAGAGAC 60.109 60.000 4.39 6.73 0.00 3.36
2664 6433 0.251653 AGTCTACACGGGCCAAGAGA 60.252 55.000 4.39 0.00 0.00 3.10
2665 6434 0.608640 AAGTCTACACGGGCCAAGAG 59.391 55.000 4.39 0.00 0.00 2.85
2666 6435 0.320374 CAAGTCTACACGGGCCAAGA 59.680 55.000 4.39 0.00 0.00 3.02
2667 6436 0.673644 CCAAGTCTACACGGGCCAAG 60.674 60.000 4.39 0.00 0.00 3.61
2668 6437 1.373435 CCAAGTCTACACGGGCCAA 59.627 57.895 4.39 0.00 0.00 4.52
2669 6438 2.589157 CCCAAGTCTACACGGGCCA 61.589 63.158 4.39 0.00 0.00 5.36
2670 6439 2.267961 CCCAAGTCTACACGGGCC 59.732 66.667 0.00 0.00 0.00 5.80
2672 6441 2.240162 GAGGCCCAAGTCTACACGGG 62.240 65.000 0.00 3.15 42.03 5.28
2673 6442 1.218316 GAGGCCCAAGTCTACACGG 59.782 63.158 0.00 0.00 0.00 4.94
2674 6443 0.108615 CAGAGGCCCAAGTCTACACG 60.109 60.000 0.00 0.00 0.00 4.49
2675 6444 0.250513 CCAGAGGCCCAAGTCTACAC 59.749 60.000 0.00 0.00 0.00 2.90
2676 6445 0.178903 ACCAGAGGCCCAAGTCTACA 60.179 55.000 0.00 0.00 0.00 2.74
2677 6446 0.537653 GACCAGAGGCCCAAGTCTAC 59.462 60.000 0.00 0.00 0.00 2.59
2678 6447 0.617820 GGACCAGAGGCCCAAGTCTA 60.618 60.000 0.00 0.00 0.00 2.59
2679 6448 1.920835 GGACCAGAGGCCCAAGTCT 60.921 63.158 0.00 0.00 0.00 3.24
2680 6449 1.492993 AAGGACCAGAGGCCCAAGTC 61.493 60.000 0.00 1.10 0.00 3.01
2681 6450 1.464198 AAGGACCAGAGGCCCAAGT 60.464 57.895 0.00 0.00 0.00 3.16
2682 6451 1.001641 CAAGGACCAGAGGCCCAAG 60.002 63.158 0.00 0.00 0.00 3.61
2683 6452 1.463214 TCAAGGACCAGAGGCCCAA 60.463 57.895 0.00 0.00 0.00 4.12
2684 6453 2.206900 TCAAGGACCAGAGGCCCA 59.793 61.111 0.00 0.00 0.00 5.36
2685 6454 2.671682 GTCAAGGACCAGAGGCCC 59.328 66.667 0.00 0.00 0.00 5.80
2686 6455 2.266055 CGTCAAGGACCAGAGGCC 59.734 66.667 0.00 0.00 0.00 5.19
2687 6456 1.374758 CACGTCAAGGACCAGAGGC 60.375 63.158 0.00 0.00 0.00 4.70
2688 6457 1.374758 GCACGTCAAGGACCAGAGG 60.375 63.158 0.00 0.00 0.00 3.69
2689 6458 0.389166 GAGCACGTCAAGGACCAGAG 60.389 60.000 0.00 0.00 0.00 3.35
2690 6459 0.827925 AGAGCACGTCAAGGACCAGA 60.828 55.000 0.00 0.00 0.00 3.86
2691 6460 0.668706 CAGAGCACGTCAAGGACCAG 60.669 60.000 0.00 0.00 0.00 4.00
2692 6461 1.367471 CAGAGCACGTCAAGGACCA 59.633 57.895 0.00 0.00 0.00 4.02
2693 6462 1.374758 CCAGAGCACGTCAAGGACC 60.375 63.158 0.00 0.00 0.00 4.46
2694 6463 0.247736 ATCCAGAGCACGTCAAGGAC 59.752 55.000 0.00 0.00 35.23 3.85
2695 6464 0.532573 GATCCAGAGCACGTCAAGGA 59.467 55.000 0.00 0.00 36.42 3.36
2696 6465 0.803768 CGATCCAGAGCACGTCAAGG 60.804 60.000 0.00 0.00 0.00 3.61
2697 6466 1.416813 GCGATCCAGAGCACGTCAAG 61.417 60.000 0.00 0.00 0.00 3.02
2698 6467 1.446099 GCGATCCAGAGCACGTCAA 60.446 57.895 0.00 0.00 0.00 3.18
2699 6468 2.181777 GCGATCCAGAGCACGTCA 59.818 61.111 0.00 0.00 0.00 4.35
2700 6469 1.875813 CAGCGATCCAGAGCACGTC 60.876 63.158 0.00 0.00 35.48 4.34
2701 6470 2.159819 AACAGCGATCCAGAGCACGT 62.160 55.000 0.00 0.00 35.48 4.49
2702 6471 1.446792 AACAGCGATCCAGAGCACG 60.447 57.895 0.00 0.00 35.48 5.34
2703 6472 1.975363 GCAACAGCGATCCAGAGCAC 61.975 60.000 0.00 0.00 35.48 4.40
2704 6473 1.742880 GCAACAGCGATCCAGAGCA 60.743 57.895 0.00 0.00 35.48 4.26
2705 6474 2.467826 GGCAACAGCGATCCAGAGC 61.468 63.158 0.00 0.00 0.00 4.09
2706 6475 2.169789 CGGCAACAGCGATCCAGAG 61.170 63.158 0.00 0.00 0.00 3.35
2707 6476 2.125552 CGGCAACAGCGATCCAGA 60.126 61.111 0.00 0.00 0.00 3.86
2708 6477 3.197790 CCGGCAACAGCGATCCAG 61.198 66.667 0.00 0.00 0.00 3.86
2711 6480 3.430862 TTGCCGGCAACAGCGATC 61.431 61.111 37.30 0.00 45.38 3.69
2732 6501 2.027377 CCAAGCCCTATAGCTGATCCAG 60.027 54.545 0.00 0.00 44.11 3.86
2733 6502 1.980765 CCAAGCCCTATAGCTGATCCA 59.019 52.381 0.00 0.00 44.11 3.41
2734 6503 1.339535 GCCAAGCCCTATAGCTGATCC 60.340 57.143 0.00 0.00 44.11 3.36
2735 6504 1.674221 CGCCAAGCCCTATAGCTGATC 60.674 57.143 0.00 0.00 44.11 2.92
2736 6505 0.322975 CGCCAAGCCCTATAGCTGAT 59.677 55.000 0.00 0.00 44.11 2.90
2737 6506 1.748403 CGCCAAGCCCTATAGCTGA 59.252 57.895 0.00 0.00 44.11 4.26
2738 6507 1.963338 GCGCCAAGCCCTATAGCTG 60.963 63.158 0.00 0.00 44.11 4.24
2749 6518 4.399395 TGCAGGAGGAGCGCCAAG 62.399 66.667 9.88 0.00 36.29 3.61
2750 6519 4.399395 CTGCAGGAGGAGCGCCAA 62.399 66.667 9.88 0.00 36.29 4.52
2753 6522 3.461773 TACCTGCAGGAGGAGCGC 61.462 66.667 39.19 0.00 46.33 5.92
2754 6523 1.680522 ATGTACCTGCAGGAGGAGCG 61.681 60.000 39.19 11.20 46.33 5.03
2755 6524 0.179062 CATGTACCTGCAGGAGGAGC 60.179 60.000 39.19 21.41 46.33 4.70
2756 6525 0.467384 CCATGTACCTGCAGGAGGAG 59.533 60.000 39.19 21.88 46.33 3.69
2757 6526 0.982852 CCCATGTACCTGCAGGAGGA 60.983 60.000 39.19 20.85 46.33 3.71
2759 6528 1.153086 GCCCATGTACCTGCAGGAG 60.153 63.158 39.19 20.54 38.94 3.69
2760 6529 0.326143 TAGCCCATGTACCTGCAGGA 60.326 55.000 39.19 18.02 38.94 3.86
2761 6530 0.179045 GTAGCCCATGTACCTGCAGG 60.179 60.000 31.60 31.60 42.17 4.85
2762 6531 0.541392 TGTAGCCCATGTACCTGCAG 59.459 55.000 6.78 6.78 0.00 4.41
2763 6532 0.541392 CTGTAGCCCATGTACCTGCA 59.459 55.000 0.00 0.00 0.00 4.41
2764 6533 0.179045 CCTGTAGCCCATGTACCTGC 60.179 60.000 0.00 0.00 0.00 4.85
2765 6534 0.469917 CCCTGTAGCCCATGTACCTG 59.530 60.000 0.00 0.00 0.00 4.00
2766 6535 1.345715 GCCCTGTAGCCCATGTACCT 61.346 60.000 0.00 0.00 0.00 3.08
2767 6536 1.148498 GCCCTGTAGCCCATGTACC 59.852 63.158 0.00 0.00 0.00 3.34
2768 6537 0.179045 CAGCCCTGTAGCCCATGTAC 60.179 60.000 0.00 0.00 0.00 2.90
2769 6538 1.983119 GCAGCCCTGTAGCCCATGTA 61.983 60.000 0.00 0.00 0.00 2.29
2770 6539 3.001514 CAGCCCTGTAGCCCATGT 58.998 61.111 0.00 0.00 0.00 3.21
2771 6540 2.517875 GCAGCCCTGTAGCCCATG 60.518 66.667 0.00 0.00 0.00 3.66
2772 6541 2.693864 AGCAGCCCTGTAGCCCAT 60.694 61.111 0.00 0.00 0.00 4.00
2773 6542 3.720601 CAGCAGCCCTGTAGCCCA 61.721 66.667 0.00 0.00 36.79 5.36
2774 6543 3.402681 TCAGCAGCCCTGTAGCCC 61.403 66.667 2.34 0.00 42.38 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.