Multiple sequence alignment - TraesCS7B01G232600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G232600 chr7B 100.000 8419 0 0 1 8419 435807751 435816169 0.000000e+00 15548.0
1 TraesCS7B01G232600 chr7B 82.888 187 13 6 8243 8413 181408296 181408113 5.260000e-32 150.0
2 TraesCS7B01G232600 chr7D 97.334 3076 52 12 1 3062 419789867 419792926 0.000000e+00 5199.0
3 TraesCS7B01G232600 chr7D 98.273 2142 30 3 3210 5344 419793177 419795318 0.000000e+00 3744.0
4 TraesCS7B01G232600 chr7D 96.477 1788 50 8 6072 7847 419795755 419797541 0.000000e+00 2940.0
5 TraesCS7B01G232600 chr7D 99.083 436 3 1 5525 5959 419795322 419795757 0.000000e+00 782.0
6 TraesCS7B01G232600 chr7D 91.519 566 40 5 7858 8419 419797652 419798213 0.000000e+00 773.0
7 TraesCS7B01G232600 chr7D 99.333 150 1 0 3061 3210 419792989 419793138 1.080000e-68 272.0
8 TraesCS7B01G232600 chr7D 96.581 117 4 0 5957 6073 256189442 256189326 2.400000e-45 195.0
9 TraesCS7B01G232600 chr7D 96.721 61 1 1 3061 3121 596233599 596233540 5.380000e-17 100.0
10 TraesCS7B01G232600 chr7A 92.079 1780 113 10 1284 3047 513222995 513221228 0.000000e+00 2481.0
11 TraesCS7B01G232600 chr7A 91.625 1791 103 21 6073 7847 513218761 513217002 0.000000e+00 2433.0
12 TraesCS7B01G232600 chr7A 93.609 1377 85 3 4104 5478 513220585 513219210 0.000000e+00 2052.0
13 TraesCS7B01G232600 chr7A 92.340 483 23 6 3213 3682 513221061 513220580 0.000000e+00 675.0
14 TraesCS7B01G232600 chr7A 91.917 433 34 1 5520 5952 513219198 513218767 9.350000e-169 604.0
15 TraesCS7B01G232600 chr7A 84.839 620 66 17 619 1228 513223575 513222974 4.350000e-167 599.0
16 TraesCS7B01G232600 chr7A 92.350 183 7 4 8066 8242 513216420 513216239 3.900000e-63 254.0
17 TraesCS7B01G232600 chr7A 90.566 106 3 3 3114 3213 513221212 513221108 5.300000e-27 134.0
18 TraesCS7B01G232600 chr7A 87.500 80 8 2 3039 3116 28155626 28155547 3.240000e-14 91.6
19 TraesCS7B01G232600 chr3B 98.438 128 2 0 5947 6074 105365457 105365330 8.500000e-55 226.0
20 TraesCS7B01G232600 chr3B 100.000 117 0 0 5957 6073 728774805 728774921 5.120000e-52 217.0
21 TraesCS7B01G232600 chr3B 80.203 197 22 7 8233 8414 544545837 544546031 1.910000e-26 132.0
22 TraesCS7B01G232600 chr3B 100.000 61 0 0 3061 3121 189918606 189918546 6.910000e-21 113.0
23 TraesCS7B01G232600 chr2B 100.000 120 0 0 5957 6076 335389005 335389124 1.100000e-53 222.0
24 TraesCS7B01G232600 chr2B 82.105 190 15 7 8243 8416 777651553 777651367 2.450000e-30 145.0
25 TraesCS7B01G232600 chr2B 81.347 193 17 9 8237 8413 415996862 415997051 1.140000e-28 139.0
26 TraesCS7B01G232600 chr2B 98.039 51 1 0 1231 1281 699072585 699072535 1.160000e-13 89.8
27 TraesCS7B01G232600 chr2B 96.154 52 2 0 1230 1281 742451473 742451422 1.510000e-12 86.1
28 TraesCS7B01G232600 chr4D 96.610 118 3 1 5957 6073 36835961 36835844 2.400000e-45 195.0
29 TraesCS7B01G232600 chr4D 94.400 125 7 0 5949 6073 293136467 293136591 8.620000e-45 193.0
30 TraesCS7B01G232600 chr4D 93.130 131 8 1 5943 6073 507908265 507908136 3.100000e-44 191.0
31 TraesCS7B01G232600 chr4D 86.207 87 9 3 3031 3115 441079367 441079282 3.240000e-14 91.6
32 TraesCS7B01G232600 chr6B 94.444 126 6 1 5949 6073 631968708 631968833 8.620000e-45 193.0
33 TraesCS7B01G232600 chr6B 96.364 55 2 0 1231 1285 448612891 448612837 3.240000e-14 91.6
34 TraesCS7B01G232600 chr1B 90.511 137 11 2 5954 6090 613246048 613245914 6.710000e-41 180.0
35 TraesCS7B01G232600 chr1B 98.039 51 1 0 1231 1281 5866000 5866050 1.160000e-13 89.8
36 TraesCS7B01G232600 chr3D 82.915 199 12 9 8233 8414 418215933 418216126 8.750000e-35 159.0
37 TraesCS7B01G232600 chr5D 82.703 185 13 7 8243 8411 509543086 509542905 6.810000e-31 147.0
38 TraesCS7B01G232600 chr5D 81.579 190 15 8 8243 8415 423970414 423970600 1.140000e-28 139.0
39 TraesCS7B01G232600 chrUn 89.908 109 6 4 8241 8344 170188938 170189046 1.470000e-27 135.0
40 TraesCS7B01G232600 chrUn 92.105 76 1 4 3039 3114 27338400 27338330 1.500000e-17 102.0
41 TraesCS7B01G232600 chr4B 98.276 58 1 0 3061 3118 552019772 552019829 1.500000e-17 102.0
42 TraesCS7B01G232600 chr4B 96.154 52 2 0 1230 1281 143321447 143321498 1.510000e-12 86.1
43 TraesCS7B01G232600 chr1A 95.238 63 3 0 3061 3123 558981494 558981556 5.380000e-17 100.0
44 TraesCS7B01G232600 chr1A 87.654 81 2 5 3041 3121 540300671 540300599 4.190000e-13 87.9
45 TraesCS7B01G232600 chr2D 98.077 52 1 0 1230 1281 199141567 199141618 3.240000e-14 91.6
46 TraesCS7B01G232600 chr2D 96.078 51 2 0 1231 1281 387432142 387432092 5.420000e-12 84.2
47 TraesCS7B01G232600 chr2D 97.059 34 1 0 3180 3213 547882286 547882319 3.280000e-04 58.4
48 TraesCS7B01G232600 chr2D 97.059 34 1 0 3180 3213 547898430 547898463 3.280000e-04 58.4
49 TraesCS7B01G232600 chr4A 96.154 52 2 0 1230 1281 547658783 547658732 1.510000e-12 86.1
50 TraesCS7B01G232600 chr2A 100.000 29 0 0 3182 3210 207592777 207592749 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G232600 chr7B 435807751 435816169 8418 False 15548 15548 100.000000 1 8419 1 chr7B.!!$F1 8418
1 TraesCS7B01G232600 chr7D 419789867 419798213 8346 False 2285 5199 97.003167 1 8419 6 chr7D.!!$F1 8418
2 TraesCS7B01G232600 chr7A 513216239 513223575 7336 True 1154 2481 91.165625 619 8242 8 chr7A.!!$R2 7623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 587 2.799017 TCTAGAAGGAGCGGTGTACAA 58.201 47.619 0.00 0.0 0.00 2.41 F
1077 1085 1.949525 TGCTGCTTGAGAAGTTTCCAC 59.050 47.619 0.00 0.0 0.00 4.02 F
2749 2786 2.475200 AAGTCAGCTGTTCGTTTTGC 57.525 45.000 14.67 0.0 0.00 3.68 F
2985 3022 0.392461 TTGGCGCAGGAGTATTGGAC 60.392 55.000 10.83 0.0 0.00 4.02 F
3210 3316 3.307480 CCCTCCGATCCAAAGTAAGTGTT 60.307 47.826 0.00 0.0 0.00 3.32 F
3818 3983 1.734465 GTAAACGAGCTTGCTGATGCT 59.266 47.619 0.00 0.0 42.82 3.79 F
5501 5674 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2481 2517 0.603569 TGAAGAGGAGGCAGAACGAC 59.396 55.000 0.0 0.0 0.00 4.34 R
2950 2987 3.304391 GCGCCAAGTAGAATTTTCACACA 60.304 43.478 0.0 0.0 0.00 3.72 R
3801 3966 1.066573 AGTAGCATCAGCAAGCTCGTT 60.067 47.619 0.0 0.0 45.49 3.85 R
3818 3983 1.138266 GCCTCACGCCCTTCATTAGTA 59.862 52.381 0.0 0.0 0.00 1.82 R
4034 4199 3.352648 CCATCGGAATTGGGTAACACTT 58.647 45.455 0.0 0.0 39.74 3.16 R
5504 5677 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.0 0.0 0.00 3.82 R
7480 7658 1.060698 GCTAGCGAAAACCGTAAGCAG 59.939 52.381 0.0 0.0 43.09 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.995565 ATGGTATTTATACTCGCTGCCTA 57.004 39.130 0.00 0.00 33.81 3.93
127 128 9.886132 GTAAAGTTTATCAGGAGAATGTAAGGA 57.114 33.333 0.00 0.00 0.00 3.36
128 129 8.794335 AAAGTTTATCAGGAGAATGTAAGGAC 57.206 34.615 0.00 0.00 0.00 3.85
132 133 5.965033 ATCAGGAGAATGTAAGGACACAT 57.035 39.130 0.00 0.00 40.90 3.21
194 195 3.518303 GAGGAAGCCTAAGGGTACTTTGA 59.482 47.826 0.00 0.00 38.14 2.69
195 196 4.112331 AGGAAGCCTAAGGGTACTTTGAT 58.888 43.478 0.00 0.00 38.14 2.57
387 389 6.231211 CAATTTAATACGGCTGGGATACTCT 58.769 40.000 0.00 0.00 0.00 3.24
585 587 2.799017 TCTAGAAGGAGCGGTGTACAA 58.201 47.619 0.00 0.00 0.00 2.41
656 658 6.065374 TGTCTTGTTACCTTTATTTGGCTGA 58.935 36.000 0.00 0.00 0.00 4.26
881 889 7.908827 TGTTGTCTTGTTGTGTAGAAAGTTA 57.091 32.000 0.00 0.00 0.00 2.24
894 902 7.700234 TGTGTAGAAAGTTATTGTTTGTTGCTG 59.300 33.333 0.00 0.00 0.00 4.41
985 993 2.880890 CACTCTTGGCTGCTAACTGTTT 59.119 45.455 0.00 0.00 0.00 2.83
1077 1085 1.949525 TGCTGCTTGAGAAGTTTCCAC 59.050 47.619 0.00 0.00 0.00 4.02
1098 1108 6.378564 TCCACAGAAATGGTTTGTCAAACTTA 59.621 34.615 24.02 15.55 40.95 2.24
1134 1144 7.573096 GCTCTTTGTTATAGCAAGTTAGCAACA 60.573 37.037 18.81 0.00 36.26 3.33
1144 1154 3.988379 AGTTAGCAACACAACACATGG 57.012 42.857 0.00 0.00 0.00 3.66
1164 1174 5.263968 TGGTTTTTGAGGAATTAACGCAA 57.736 34.783 0.00 0.00 0.00 4.85
1165 1175 5.044558 TGGTTTTTGAGGAATTAACGCAAC 58.955 37.500 0.00 0.00 0.00 4.17
1166 1176 5.044558 GGTTTTTGAGGAATTAACGCAACA 58.955 37.500 0.00 0.00 0.00 3.33
1167 1177 5.051307 GGTTTTTGAGGAATTAACGCAACAC 60.051 40.000 0.00 0.94 0.00 3.32
1168 1178 4.902443 TTTGAGGAATTAACGCAACACA 57.098 36.364 0.00 0.00 0.00 3.72
1169 1179 5.446143 TTTGAGGAATTAACGCAACACAT 57.554 34.783 0.00 0.00 0.00 3.21
1170 1180 5.446143 TTGAGGAATTAACGCAACACATT 57.554 34.783 0.00 0.00 0.00 2.71
1258 1268 3.842820 GCATTCTTTTGCCCTTCTTCTC 58.157 45.455 0.00 0.00 36.60 2.87
1281 1291 9.396022 TCTCTAATATATGATATGCACACTCGA 57.604 33.333 0.00 0.00 0.00 4.04
1283 1293 9.396022 TCTAATATATGATATGCACACTCGAGA 57.604 33.333 21.68 0.00 0.00 4.04
1287 1297 9.710900 ATATATGATATGCACACTCGAGAAAAA 57.289 29.630 21.68 0.49 0.00 1.94
1346 1367 7.410174 TCATACAATGGTTTGATTAGTCCCTT 58.590 34.615 0.00 0.00 36.64 3.95
1430 1451 4.621991 TCTCTCTCTTTCAAACAGAACCG 58.378 43.478 0.00 0.00 35.56 4.44
1479 1508 9.750125 GTAAAGGATGAATCACTGAAAAACTTT 57.250 29.630 0.00 0.00 0.00 2.66
1506 1535 6.597672 TGTTATGACTGTTCTGAGTGTTTTGT 59.402 34.615 0.00 0.00 0.00 2.83
1827 1856 9.938280 CTATATCCCGGTTATCAGTGATAAAAA 57.062 33.333 23.88 5.03 36.46 1.94
1978 2007 4.472690 TTTTGGTAGGGGTGTATTGGTT 57.527 40.909 0.00 0.00 0.00 3.67
2216 2246 7.852945 GTGTGCATGAGAGCTATGTAAAAATAC 59.147 37.037 0.00 0.00 34.99 1.89
2325 2355 4.724399 TCACATATTGGAGTGTTGGTTGT 58.276 39.130 0.00 0.00 37.07 3.32
2368 2398 6.154192 ACGATGCTATCATTCTATCTGGTGAT 59.846 38.462 0.00 0.00 35.62 3.06
2481 2517 5.009631 TCTGTTACCAGGTGATCATTTTGG 58.990 41.667 16.90 16.90 39.31 3.28
2522 2558 2.589014 GGCTCAAAGTTCATGAAAGCG 58.411 47.619 18.24 6.16 0.00 4.68
2748 2785 3.531982 CGTAAGTCAGCTGTTCGTTTTG 58.468 45.455 14.67 0.00 0.00 2.44
2749 2786 2.475200 AAGTCAGCTGTTCGTTTTGC 57.525 45.000 14.67 0.00 0.00 3.68
2804 2841 7.493320 TCATGTACGGTAAGAAATTATGTGGAC 59.507 37.037 0.00 0.00 0.00 4.02
2898 2935 4.214971 CAGTTGTACAGCTCAATTGCTTCT 59.785 41.667 9.54 0.00 41.98 2.85
2904 2941 5.526506 ACAGCTCAATTGCTTCTCTTTTT 57.473 34.783 0.00 0.00 41.98 1.94
2950 2987 1.946984 TCCACGGTGGTTTCCTATCT 58.053 50.000 25.53 0.00 39.03 1.98
2985 3022 0.392461 TTGGCGCAGGAGTATTGGAC 60.392 55.000 10.83 0.00 0.00 4.02
3210 3316 3.307480 CCCTCCGATCCAAAGTAAGTGTT 60.307 47.826 0.00 0.00 0.00 3.32
3487 3643 6.240894 TGTTCAGTCTTTGCCAATCTTAGAT 58.759 36.000 0.00 0.00 0.00 1.98
3684 3849 3.373748 TCTGTACAAATAAGCATGGCACG 59.626 43.478 0.00 0.00 0.00 5.34
3818 3983 1.734465 GTAAACGAGCTTGCTGATGCT 59.266 47.619 0.00 0.00 42.82 3.79
4034 4199 0.895100 GGGCACACTTGGAAGATGCA 60.895 55.000 16.71 0.00 40.75 3.96
4154 4319 8.131731 TGTCGAGATATATTCTAGCACATATGC 58.868 37.037 1.58 0.00 43.29 3.14
4220 4385 5.920840 GGTTTCCACTTTTTGCAGTCTATTC 59.079 40.000 0.00 0.00 0.00 1.75
4422 4588 7.250569 AGCATTTTAGGTTGATTTGTATGTCG 58.749 34.615 0.00 0.00 0.00 4.35
4490 4656 6.863126 GTGCAAATGTGAAATGTAACTAAGCT 59.137 34.615 0.00 0.00 0.00 3.74
4646 4812 6.728632 TGCATATCTATACTGTGGGAATGGTA 59.271 38.462 0.00 0.00 0.00 3.25
4651 4817 7.223260 TCTATACTGTGGGAATGGTAATACG 57.777 40.000 0.00 0.00 0.00 3.06
4659 4831 4.141597 TGGGAATGGTAATACGAATGCTGA 60.142 41.667 0.00 0.00 0.00 4.26
4674 4846 6.359617 ACGAATGCTGAAAATGTTTTCTTACG 59.640 34.615 16.53 14.46 45.14 3.18
4686 4858 4.156190 TGTTTTCTTACGGAGTGTTTGCAA 59.844 37.500 0.00 0.00 45.73 4.08
4700 4872 5.772672 AGTGTTTGCAATCCAAGTATAACCA 59.227 36.000 0.00 0.00 34.34 3.67
5237 5409 3.926527 TGCTAGACTGTCGCTTAAATGTG 59.073 43.478 1.52 0.00 0.00 3.21
5344 5517 3.196901 TGGCGGTGACTTGTGAATACTAT 59.803 43.478 0.00 0.00 0.00 2.12
5373 5546 8.135529 TCATACAGATAAAGTCGTGGAACTATG 58.864 37.037 0.00 0.00 31.75 2.23
5374 5547 5.109903 ACAGATAAAGTCGTGGAACTATGC 58.890 41.667 0.00 0.00 31.75 3.14
5386 5559 4.641396 TGGAACTATGCCACATGCTATAC 58.359 43.478 0.00 0.00 42.00 1.47
5397 5570 6.013812 TGCCACATGCTATACCATTATGACTA 60.014 38.462 0.00 0.00 42.00 2.59
5398 5571 6.536582 GCCACATGCTATACCATTATGACTAG 59.463 42.308 0.00 0.00 36.87 2.57
5401 5574 7.063898 CACATGCTATACCATTATGACTAGTGC 59.936 40.741 0.00 0.00 0.00 4.40
5493 5666 7.851387 TTCTTATTTCTAACACACACACACA 57.149 32.000 0.00 0.00 0.00 3.72
5494 5667 7.241663 TCTTATTTCTAACACACACACACAC 57.758 36.000 0.00 0.00 0.00 3.82
5496 5669 4.671880 TTTCTAACACACACACACACAC 57.328 40.909 0.00 0.00 0.00 3.82
5497 5670 3.320673 TCTAACACACACACACACACA 57.679 42.857 0.00 0.00 0.00 3.72
5498 5671 2.997303 TCTAACACACACACACACACAC 59.003 45.455 0.00 0.00 0.00 3.82
5499 5672 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
5500 5673 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5501 5674 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5502 5675 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5503 5676 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5504 5677 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5505 5678 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5506 5679 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5507 5680 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5508 5681 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5509 5682 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5510 5683 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5511 5684 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5512 5685 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5513 5686 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5514 5687 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5515 5688 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5516 5689 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5517 5690 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5518 5691 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5519 5692 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5520 5693 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5521 5694 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5522 5695 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5523 5696 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
5671 5844 7.653713 GCTAATTCATGCTCTAAGTGCTTACTA 59.346 37.037 0.00 0.00 0.00 1.82
5690 5863 5.447624 ACTATTTTCGTTTGTCCCCTTTG 57.552 39.130 0.00 0.00 0.00 2.77
5691 5864 2.588027 TTTTCGTTTGTCCCCTTTGC 57.412 45.000 0.00 0.00 0.00 3.68
5961 6135 9.091220 AGAGGGTATGTTCTTACAATATACTCC 57.909 37.037 0.00 0.00 37.91 3.85
5962 6136 8.203681 AGGGTATGTTCTTACAATATACTCCC 57.796 38.462 0.00 0.00 37.91 4.30
5963 6137 8.017251 AGGGTATGTTCTTACAATATACTCCCT 58.983 37.037 0.00 0.00 37.91 4.20
5964 6138 8.312564 GGGTATGTTCTTACAATATACTCCCTC 58.687 40.741 0.00 0.00 37.91 4.30
5965 6139 8.312564 GGTATGTTCTTACAATATACTCCCTCC 58.687 40.741 0.00 0.00 37.91 4.30
5966 6140 6.401047 TGTTCTTACAATATACTCCCTCCG 57.599 41.667 0.00 0.00 0.00 4.63
5967 6141 5.895534 TGTTCTTACAATATACTCCCTCCGT 59.104 40.000 0.00 0.00 0.00 4.69
5968 6142 6.040166 TGTTCTTACAATATACTCCCTCCGTC 59.960 42.308 0.00 0.00 0.00 4.79
5969 6143 5.075493 TCTTACAATATACTCCCTCCGTCC 58.925 45.833 0.00 0.00 0.00 4.79
5970 6144 3.323774 ACAATATACTCCCTCCGTCCA 57.676 47.619 0.00 0.00 0.00 4.02
5971 6145 3.231818 ACAATATACTCCCTCCGTCCAG 58.768 50.000 0.00 0.00 0.00 3.86
5972 6146 3.117246 ACAATATACTCCCTCCGTCCAGA 60.117 47.826 0.00 0.00 0.00 3.86
5973 6147 3.895656 CAATATACTCCCTCCGTCCAGAA 59.104 47.826 0.00 0.00 0.00 3.02
5974 6148 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
5975 6149 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
5976 6150 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
5977 6151 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
5978 6152 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
5979 6153 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
5980 6154 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
5981 6155 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
5982 6156 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
5983 6157 3.179830 CTCCGTCCAGAAATACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
5984 6158 1.659098 CCGTCCAGAAATACTTGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
5985 6159 2.333926 CGTCCAGAAATACTTGTCGCA 58.666 47.619 0.00 0.00 0.00 5.10
5986 6160 2.092211 CGTCCAGAAATACTTGTCGCAC 59.908 50.000 0.00 0.00 0.00 5.34
5987 6161 3.064207 GTCCAGAAATACTTGTCGCACA 58.936 45.455 0.00 0.00 0.00 4.57
5988 6162 3.496884 GTCCAGAAATACTTGTCGCACAA 59.503 43.478 2.49 2.49 36.54 3.33
5989 6163 4.024387 GTCCAGAAATACTTGTCGCACAAA 60.024 41.667 3.84 0.00 37.69 2.83
5990 6164 4.759693 TCCAGAAATACTTGTCGCACAAAT 59.240 37.500 3.84 0.00 37.69 2.32
5991 6165 4.853196 CCAGAAATACTTGTCGCACAAATG 59.147 41.667 3.84 0.00 37.69 2.32
5992 6166 4.853196 CAGAAATACTTGTCGCACAAATGG 59.147 41.667 3.84 0.00 37.69 3.16
5993 6167 4.759693 AGAAATACTTGTCGCACAAATGGA 59.240 37.500 3.84 0.00 37.69 3.41
5994 6168 5.415701 AGAAATACTTGTCGCACAAATGGAT 59.584 36.000 3.84 0.00 37.69 3.41
5995 6169 6.597672 AGAAATACTTGTCGCACAAATGGATA 59.402 34.615 3.84 0.00 37.69 2.59
5996 6170 6.751514 AATACTTGTCGCACAAATGGATAA 57.248 33.333 3.84 0.00 37.69 1.75
5997 6171 6.751514 ATACTTGTCGCACAAATGGATAAA 57.248 33.333 3.84 0.00 37.69 1.40
5998 6172 5.446143 ACTTGTCGCACAAATGGATAAAA 57.554 34.783 3.84 0.00 37.69 1.52
5999 6173 5.219633 ACTTGTCGCACAAATGGATAAAAC 58.780 37.500 3.84 0.00 37.69 2.43
6000 6174 5.009610 ACTTGTCGCACAAATGGATAAAACT 59.990 36.000 3.84 0.00 37.69 2.66
6001 6175 4.793071 TGTCGCACAAATGGATAAAACTG 58.207 39.130 0.00 0.00 0.00 3.16
6002 6176 4.165779 GTCGCACAAATGGATAAAACTGG 58.834 43.478 0.00 0.00 0.00 4.00
6003 6177 4.075682 TCGCACAAATGGATAAAACTGGA 58.924 39.130 0.00 0.00 0.00 3.86
6004 6178 4.704540 TCGCACAAATGGATAAAACTGGAT 59.295 37.500 0.00 0.00 0.00 3.41
6005 6179 4.799949 CGCACAAATGGATAAAACTGGATG 59.200 41.667 0.00 0.00 0.00 3.51
6006 6180 4.567959 GCACAAATGGATAAAACTGGATGC 59.432 41.667 0.00 0.00 0.00 3.91
6007 6181 5.722263 CACAAATGGATAAAACTGGATGCA 58.278 37.500 0.00 0.00 0.00 3.96
6008 6182 6.342906 CACAAATGGATAAAACTGGATGCAT 58.657 36.000 0.00 0.00 35.84 3.96
6009 6183 6.477688 CACAAATGGATAAAACTGGATGCATC 59.522 38.462 18.81 18.81 33.50 3.91
6010 6184 6.381994 ACAAATGGATAAAACTGGATGCATCT 59.618 34.615 25.28 7.83 33.50 2.90
6011 6185 7.560991 ACAAATGGATAAAACTGGATGCATCTA 59.439 33.333 25.28 19.20 33.50 1.98
6012 6186 8.415553 CAAATGGATAAAACTGGATGCATCTAA 58.584 33.333 25.28 13.55 33.50 2.10
6013 6187 8.537728 AATGGATAAAACTGGATGCATCTAAA 57.462 30.769 25.28 11.18 33.50 1.85
6014 6188 7.953005 TGGATAAAACTGGATGCATCTAAAA 57.047 32.000 25.28 8.84 0.00 1.52
6015 6189 7.771183 TGGATAAAACTGGATGCATCTAAAAC 58.229 34.615 25.28 9.59 0.00 2.43
6016 6190 7.615365 TGGATAAAACTGGATGCATCTAAAACT 59.385 33.333 25.28 9.77 0.00 2.66
6017 6191 9.120538 GGATAAAACTGGATGCATCTAAAACTA 57.879 33.333 25.28 11.47 0.00 2.24
6045 6219 6.865834 ATGACTAGATACATCCATTCCTCC 57.134 41.667 0.00 0.00 0.00 4.30
6046 6220 4.767409 TGACTAGATACATCCATTCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
6047 6221 4.999310 ACTAGATACATCCATTCCTCCGA 58.001 43.478 0.00 0.00 0.00 4.55
6048 6222 4.767928 ACTAGATACATCCATTCCTCCGAC 59.232 45.833 0.00 0.00 0.00 4.79
6049 6223 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
6050 6224 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
6051 6225 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
6052 6226 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
6053 6227 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
6054 6228 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
6055 6229 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
6056 6230 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
6057 6231 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
6058 6232 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
6059 6233 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
6060 6234 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
6061 6235 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
6062 6236 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
6063 6237 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
6064 6238 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
6065 6239 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
6066 6240 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
6067 6241 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6068 6242 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6069 6243 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6070 6244 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
6071 6245 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
6072 6246 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
6073 6247 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
6355 6529 6.027749 GGTTGAGCTATTTTTACACCGAATG 58.972 40.000 0.00 0.00 0.00 2.67
6453 6627 5.771165 TGGATACGGTCATACAGTGCTATTA 59.229 40.000 0.00 0.00 42.51 0.98
6519 6695 9.059260 CCATTTATTCATGTGTGATCAGTATCA 57.941 33.333 0.00 0.00 39.87 2.15
6701 6879 3.367395 GCTCTTTTGGTTACCCTGAATGC 60.367 47.826 0.00 0.00 0.00 3.56
6705 6883 0.035820 TGGTTACCCTGAATGCGTCC 60.036 55.000 0.00 0.00 0.00 4.79
7244 7422 1.129251 CTGCAACTCGCGATTGTGAAT 59.871 47.619 22.96 0.65 46.97 2.57
7257 7435 2.163818 TGTGAATGACGGTTCCACTC 57.836 50.000 0.00 0.00 0.00 3.51
7364 7542 2.677875 CTGCAGGAAAGGGTGCCC 60.678 66.667 5.57 0.00 39.04 5.36
7403 7581 2.310538 CCAGCAGAACCCAACTTTTCT 58.689 47.619 0.00 0.00 32.02 2.52
7513 7691 2.750888 GCTAGCGGTTCAAAGGCGG 61.751 63.158 0.00 0.00 0.00 6.13
7569 7747 7.175347 TGATGATATATTGCTACCTGGTCTC 57.825 40.000 0.63 0.00 0.00 3.36
7574 7752 0.601558 TTGCTACCTGGTCTCGACAC 59.398 55.000 0.63 0.00 0.00 3.67
7578 7756 2.159407 GCTACCTGGTCTCGACACTAAC 60.159 54.545 0.63 0.00 0.00 2.34
7579 7757 1.991121 ACCTGGTCTCGACACTAACA 58.009 50.000 0.00 0.00 0.00 2.41
7580 7758 1.612463 ACCTGGTCTCGACACTAACAC 59.388 52.381 0.00 0.00 0.00 3.32
7581 7759 1.887198 CCTGGTCTCGACACTAACACT 59.113 52.381 0.00 0.00 0.00 3.55
7582 7760 3.079578 CCTGGTCTCGACACTAACACTA 58.920 50.000 0.00 0.00 0.00 2.74
7583 7761 3.127203 CCTGGTCTCGACACTAACACTAG 59.873 52.174 0.00 0.00 0.00 2.57
7584 7762 4.001652 CTGGTCTCGACACTAACACTAGA 58.998 47.826 0.00 0.00 0.00 2.43
7585 7763 4.586884 TGGTCTCGACACTAACACTAGAT 58.413 43.478 0.00 0.00 0.00 1.98
7586 7764 5.008331 TGGTCTCGACACTAACACTAGATT 58.992 41.667 0.00 0.00 0.00 2.40
7587 7765 5.475909 TGGTCTCGACACTAACACTAGATTT 59.524 40.000 0.00 0.00 0.00 2.17
7588 7766 5.800941 GGTCTCGACACTAACACTAGATTTG 59.199 44.000 0.00 0.00 0.00 2.32
7589 7767 5.286558 GTCTCGACACTAACACTAGATTTGC 59.713 44.000 0.00 0.00 0.00 3.68
7590 7768 5.183331 TCTCGACACTAACACTAGATTTGCT 59.817 40.000 0.00 0.00 0.00 3.91
7591 7769 5.779922 TCGACACTAACACTAGATTTGCTT 58.220 37.500 0.00 0.00 0.00 3.91
7592 7770 5.633601 TCGACACTAACACTAGATTTGCTTG 59.366 40.000 0.00 0.00 0.00 4.01
7593 7771 5.405571 CGACACTAACACTAGATTTGCTTGT 59.594 40.000 0.00 0.00 32.68 3.16
7594 7772 6.584942 CGACACTAACACTAGATTTGCTTGTA 59.415 38.462 0.00 0.00 31.27 2.41
7595 7773 7.275779 CGACACTAACACTAGATTTGCTTGTAT 59.724 37.037 0.00 0.00 31.27 2.29
7596 7774 9.582431 GACACTAACACTAGATTTGCTTGTATA 57.418 33.333 0.00 0.00 31.27 1.47
7640 7838 9.739276 TGTGATTTGATTAGTAATCTGGTCTTT 57.261 29.630 20.80 2.74 38.72 2.52
7663 7864 7.591006 TTTGTACTACTACTTTGTGCATAGC 57.409 36.000 0.00 0.00 0.00 2.97
7689 7890 1.347707 CAGCCCAGTCCTCTTTGTGTA 59.652 52.381 0.00 0.00 0.00 2.90
7691 7892 1.339151 GCCCAGTCCTCTTTGTGTAGG 60.339 57.143 0.00 0.00 0.00 3.18
7692 7893 2.257207 CCCAGTCCTCTTTGTGTAGGA 58.743 52.381 0.00 0.00 39.63 2.94
7693 7894 2.840651 CCCAGTCCTCTTTGTGTAGGAT 59.159 50.000 0.00 0.00 43.63 3.24
7694 7895 3.369892 CCCAGTCCTCTTTGTGTAGGATG 60.370 52.174 0.00 0.00 43.63 3.51
7721 7930 5.543667 ACATAGTCCCACTGTGTTAGCAGT 61.544 45.833 7.08 0.00 46.28 4.40
7732 7941 6.645003 CACTGTGTTAGCAGTTGATAAGTGTA 59.355 38.462 0.00 0.00 46.45 2.90
7767 7976 4.633175 TGCAAACTCGTATGTGGACTTAA 58.367 39.130 0.00 0.00 0.00 1.85
7839 8048 9.040939 CGTGTTAATGTCTGATCCATTATGTTA 57.959 33.333 4.40 0.00 35.37 2.41
7853 8062 9.860650 ATCCATTATGTTAAGTTTATACCTGCA 57.139 29.630 0.00 0.00 0.00 4.41
7854 8063 9.688091 TCCATTATGTTAAGTTTATACCTGCAA 57.312 29.630 0.00 0.00 0.00 4.08
7855 8064 9.730420 CCATTATGTTAAGTTTATACCTGCAAC 57.270 33.333 0.00 0.00 0.00 4.17
7920 8234 2.543777 TGGGCTTTACGATGCTATCC 57.456 50.000 0.00 0.00 0.00 2.59
7978 8292 8.687242 TCTTTCATGAGCTCTTATATATACCGG 58.313 37.037 16.19 0.00 0.00 5.28
8034 8674 7.986889 ACTTTTGCCTCTGTTTTCATTATTTGT 59.013 29.630 0.00 0.00 0.00 2.83
8053 8693 3.396560 TGTGCTCTTCTCATGTGTCTTG 58.603 45.455 0.00 0.00 0.00 3.02
8060 8700 3.421919 TCTCATGTGTCTTGCCATGAA 57.578 42.857 0.00 0.00 44.88 2.57
8100 8740 1.886542 GGATGAACTTGAACCACCACC 59.113 52.381 0.00 0.00 0.00 4.61
8128 8769 8.695456 ACACCATTAGTTTCATTTTCTCTTTGT 58.305 29.630 0.00 0.00 0.00 2.83
8224 8865 6.038271 GGTGTAAGAACTTGACAGTGAACATT 59.962 38.462 0.00 0.00 31.60 2.71
8285 8926 1.557832 GTGCTCCACACCCCTATACAA 59.442 52.381 0.00 0.00 44.02 2.41
8287 8928 2.849943 TGCTCCACACCCCTATACAAAT 59.150 45.455 0.00 0.00 0.00 2.32
8293 8934 7.722285 GCTCCACACCCCTATACAAATATTAAA 59.278 37.037 0.00 0.00 0.00 1.52
8347 8991 5.917087 AGGGATTTTGGGATATCTAACCTGA 59.083 40.000 2.05 0.00 0.00 3.86
8350 8994 6.937465 GGATTTTGGGATATCTAACCTGAGTC 59.063 42.308 2.05 0.00 0.00 3.36
8353 8997 3.174779 GGGATATCTAACCTGAGTCCCC 58.825 54.545 2.05 0.00 38.16 4.81
8358 9002 0.246635 CTAACCTGAGTCCCCGTGTG 59.753 60.000 0.00 0.00 0.00 3.82
8365 9009 2.884639 CTGAGTCCCCGTGTGAAATTTT 59.115 45.455 0.00 0.00 0.00 1.82
8369 9013 2.359531 GTCCCCGTGTGAAATTTTGTGA 59.640 45.455 0.00 0.00 0.00 3.58
8370 9014 3.024547 TCCCCGTGTGAAATTTTGTGAA 58.975 40.909 0.00 0.00 0.00 3.18
8371 9015 3.447586 TCCCCGTGTGAAATTTTGTGAAA 59.552 39.130 0.00 0.00 0.00 2.69
8403 9047 3.600388 AGGAAACTTATTCGTGGCAGAG 58.400 45.455 0.00 0.00 37.44 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 7.431376 CACGACTCACGAGTTAAATATATGTGT 59.569 37.037 0.38 0.00 42.66 3.72
128 129 7.642586 TCACGACTCACGAGTTAAATATATGTG 59.357 37.037 0.38 1.21 42.66 3.21
132 133 7.922837 TCATCACGACTCACGAGTTAAATATA 58.077 34.615 0.38 0.00 42.66 0.86
139 140 2.750166 AGATCATCACGACTCACGAGTT 59.250 45.455 0.38 0.00 42.66 3.01
194 195 1.969923 CCTAGCCAGCTAGCTTCAGAT 59.030 52.381 16.46 8.36 41.41 2.90
195 196 1.063642 TCCTAGCCAGCTAGCTTCAGA 60.064 52.381 16.46 4.18 41.41 3.27
608 610 6.257411 CAGCAAGAGTAAATACTGGACAGATG 59.743 42.308 6.29 0.00 36.50 2.90
881 889 9.677567 CAAGTATAAGTAACAGCAACAAACAAT 57.322 29.630 0.00 0.00 0.00 2.71
894 902 9.209175 CCCTGCTGATTATCAAGTATAAGTAAC 57.791 37.037 0.00 0.00 33.56 2.50
985 993 3.459227 TCCATCATTATCTCCACCAAGCA 59.541 43.478 0.00 0.00 0.00 3.91
1077 1085 7.382218 GGATGTAAGTTTGACAAACCATTTCTG 59.618 37.037 24.09 0.00 42.34 3.02
1098 1108 4.851639 ATAACAAAGAGCTGGAGGATGT 57.148 40.909 0.00 0.00 0.00 3.06
1134 1144 5.612725 ATTCCTCAAAAACCATGTGTTGT 57.387 34.783 1.05 0.00 37.23 3.32
1144 1154 5.517054 TGTGTTGCGTTAATTCCTCAAAAAC 59.483 36.000 0.00 0.00 0.00 2.43
1164 1174 9.448438 ACACTATTATTCACATGTGTAATGTGT 57.552 29.630 26.34 26.34 46.82 3.72
1166 1176 8.892723 CCACACTATTATTCACATGTGTAATGT 58.107 33.333 24.63 12.73 36.96 2.71
1167 1177 8.892723 ACCACACTATTATTCACATGTGTAATG 58.107 33.333 24.63 12.12 36.96 1.90
1169 1179 9.594478 CTACCACACTATTATTCACATGTGTAA 57.406 33.333 24.63 16.85 36.96 2.41
1170 1180 8.755028 ACTACCACACTATTATTCACATGTGTA 58.245 33.333 24.63 16.60 36.96 2.90
1287 1297 3.243267 GCACCAACGTTCCATGTACTTTT 60.243 43.478 0.00 0.00 0.00 2.27
1346 1367 3.009253 TCCGCTAACCCATTTTGAGGTAA 59.991 43.478 0.00 0.00 34.45 2.85
1430 1451 3.782889 AAAGCCAGACAAACTTGTGTC 57.217 42.857 0.00 0.00 46.90 3.67
1479 1508 8.773645 CAAAACACTCAGAACAGTCATAACATA 58.226 33.333 0.00 0.00 0.00 2.29
1506 1535 3.135167 TCTGCACATATCATCAAGCCAGA 59.865 43.478 0.00 0.00 0.00 3.86
1827 1856 4.665009 TCCTATCCAAATACCAGCAAGGAT 59.335 41.667 1.83 0.00 41.22 3.24
2222 2252 7.284489 ACAGTATAACTCTTGAAACAGGCAAAA 59.716 33.333 0.00 0.00 0.00 2.44
2223 2253 6.770785 ACAGTATAACTCTTGAAACAGGCAAA 59.229 34.615 0.00 0.00 0.00 3.68
2224 2254 6.204688 CACAGTATAACTCTTGAAACAGGCAA 59.795 38.462 0.00 0.00 0.00 4.52
2225 2255 5.700832 CACAGTATAACTCTTGAAACAGGCA 59.299 40.000 0.00 0.00 0.00 4.75
2226 2256 5.701290 ACACAGTATAACTCTTGAAACAGGC 59.299 40.000 0.00 0.00 0.00 4.85
2368 2398 6.227298 TGGGAACTGCAAATTACAGAAAAA 57.773 33.333 13.73 0.00 38.55 1.94
2481 2517 0.603569 TGAAGAGGAGGCAGAACGAC 59.396 55.000 0.00 0.00 0.00 4.34
2748 2785 5.410924 TCGTGCTATCACTATCATATTGGC 58.589 41.667 0.00 0.00 40.99 4.52
2749 2786 5.518128 GCTCGTGCTATCACTATCATATTGG 59.482 44.000 1.41 0.00 40.99 3.16
2833 2870 7.312154 CCATCGACAAAGTTAATGGAAAATCA 58.688 34.615 0.00 0.00 39.39 2.57
2950 2987 3.304391 GCGCCAAGTAGAATTTTCACACA 60.304 43.478 0.00 0.00 0.00 3.72
3091 3192 9.289782 GAACTACTCCCTCCGTAAACTAATATA 57.710 37.037 0.00 0.00 0.00 0.86
3210 3316 1.358152 ACTCCCTCCGATCCAAAACA 58.642 50.000 0.00 0.00 0.00 2.83
3801 3966 1.066573 AGTAGCATCAGCAAGCTCGTT 60.067 47.619 0.00 0.00 45.49 3.85
3818 3983 1.138266 GCCTCACGCCCTTCATTAGTA 59.862 52.381 0.00 0.00 0.00 1.82
3925 4090 6.591062 ACATTTGCAGCATTATTTACAACCAG 59.409 34.615 0.00 0.00 0.00 4.00
4034 4199 3.352648 CCATCGGAATTGGGTAACACTT 58.647 45.455 0.00 0.00 39.74 3.16
4154 4319 4.096382 AGCAACGCTATTAGGAAATTGGTG 59.904 41.667 0.00 0.00 36.99 4.17
4391 4557 8.121305 ACAAATCAACCTAAAATGCTACATGA 57.879 30.769 0.00 0.00 0.00 3.07
4490 4656 4.767928 ACCGGTAAACATTTAGCCATTGAA 59.232 37.500 4.49 0.00 37.75 2.69
4646 4812 8.816640 AAGAAAACATTTTCAGCATTCGTATT 57.183 26.923 17.12 0.00 46.81 1.89
4651 4817 6.861055 TCCGTAAGAAAACATTTTCAGCATTC 59.139 34.615 17.12 3.54 46.81 2.67
4659 4831 6.254804 GCAAACACTCCGTAAGAAAACATTTT 59.745 34.615 0.00 0.00 43.02 1.82
4674 4846 6.322491 GTTATACTTGGATTGCAAACACTCC 58.678 40.000 1.71 6.54 44.06 3.85
4686 4858 7.200434 AGATTGTCTGTGGTTATACTTGGAT 57.800 36.000 0.00 0.00 0.00 3.41
5344 5517 6.709018 TCCACGACTTTATCTGTATGATGA 57.291 37.500 0.00 0.00 36.65 2.92
5355 5528 4.189231 GTGGCATAGTTCCACGACTTTAT 58.811 43.478 0.00 0.00 43.75 1.40
5373 5546 5.248640 AGTCATAATGGTATAGCATGTGGC 58.751 41.667 17.74 18.81 45.30 5.01
5374 5547 7.547019 CACTAGTCATAATGGTATAGCATGTGG 59.453 40.741 17.74 10.13 0.00 4.17
5378 5551 6.152831 TCGCACTAGTCATAATGGTATAGCAT 59.847 38.462 11.64 11.64 0.00 3.79
5379 5552 5.475564 TCGCACTAGTCATAATGGTATAGCA 59.524 40.000 7.15 7.15 0.00 3.49
5386 5559 5.989168 TGGTTTATCGCACTAGTCATAATGG 59.011 40.000 0.00 0.00 0.00 3.16
5397 5570 6.706270 CCAAGACTATATTGGTTTATCGCACT 59.294 38.462 0.00 0.00 41.94 4.40
5398 5571 6.888430 CCAAGACTATATTGGTTTATCGCAC 58.112 40.000 0.00 0.00 41.94 5.34
5433 5606 9.499479 TTGCTATGCTTATTTGGAAAAATCAAA 57.501 25.926 0.00 0.00 38.30 2.69
5443 5616 5.841957 AACCTCTTGCTATGCTTATTTGG 57.158 39.130 0.00 0.00 0.00 3.28
5471 5644 6.905076 GTGTGTGTGTGTGTGTTAGAAATAAG 59.095 38.462 0.00 0.00 0.00 1.73
5478 5651 2.739379 TGTGTGTGTGTGTGTGTGTTAG 59.261 45.455 0.00 0.00 0.00 2.34
5479 5652 2.480802 GTGTGTGTGTGTGTGTGTGTTA 59.519 45.455 0.00 0.00 0.00 2.41
5482 5655 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5484 5657 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5486 5659 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5488 5661 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5493 5666 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5494 5667 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5496 5669 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5497 5670 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5498 5671 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5499 5672 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5500 5673 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5501 5674 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5502 5675 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5503 5676 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5504 5677 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
5505 5678 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
5506 5679 0.793250 TTCGTGTGTGTGTGTGTGTG 59.207 50.000 0.00 0.00 0.00 3.82
5507 5680 1.732941 ATTCGTGTGTGTGTGTGTGT 58.267 45.000 0.00 0.00 0.00 3.72
5508 5681 2.220824 CCTATTCGTGTGTGTGTGTGTG 59.779 50.000 0.00 0.00 0.00 3.82
5509 5682 2.159014 ACCTATTCGTGTGTGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
5510 5683 2.479837 ACCTATTCGTGTGTGTGTGTG 58.520 47.619 0.00 0.00 0.00 3.82
5511 5684 2.902705 ACCTATTCGTGTGTGTGTGT 57.097 45.000 0.00 0.00 0.00 3.72
5512 5685 5.856126 ATTAACCTATTCGTGTGTGTGTG 57.144 39.130 0.00 0.00 0.00 3.82
5513 5686 6.870971 AAATTAACCTATTCGTGTGTGTGT 57.129 33.333 0.00 0.00 0.00 3.72
5514 5687 7.858382 TGAAAAATTAACCTATTCGTGTGTGTG 59.142 33.333 0.00 0.00 0.00 3.82
5515 5688 7.932335 TGAAAAATTAACCTATTCGTGTGTGT 58.068 30.769 0.00 0.00 0.00 3.72
5516 5689 8.789881 TTGAAAAATTAACCTATTCGTGTGTG 57.210 30.769 0.00 0.00 0.00 3.82
5517 5690 8.626526 ACTTGAAAAATTAACCTATTCGTGTGT 58.373 29.630 0.00 0.00 0.00 3.72
5518 5691 9.458374 AACTTGAAAAATTAACCTATTCGTGTG 57.542 29.630 0.00 0.00 0.00 3.82
5519 5692 9.458374 CAACTTGAAAAATTAACCTATTCGTGT 57.542 29.630 0.00 0.00 0.00 4.49
5520 5693 9.458374 ACAACTTGAAAAATTAACCTATTCGTG 57.542 29.630 0.00 0.00 0.00 4.35
5521 5694 9.458374 CACAACTTGAAAAATTAACCTATTCGT 57.542 29.630 0.00 0.00 0.00 3.85
5522 5695 9.458374 ACACAACTTGAAAAATTAACCTATTCG 57.542 29.630 0.00 0.00 0.00 3.34
5671 5844 2.698274 AGCAAAGGGGACAAACGAAAAT 59.302 40.909 0.00 0.00 0.00 1.82
5690 5863 6.371825 ACTGCAAATAGGTCTGTAAAAGTAGC 59.628 38.462 0.00 0.00 0.00 3.58
5691 5864 7.602644 TGACTGCAAATAGGTCTGTAAAAGTAG 59.397 37.037 4.86 0.00 0.00 2.57
5959 6133 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
5960 6134 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
5961 6135 3.522553 GACAAGTATTTCTGGACGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
5962 6136 3.179830 CGACAAGTATTTCTGGACGGAG 58.820 50.000 0.00 0.00 33.12 4.63
5963 6137 2.673043 GCGACAAGTATTTCTGGACGGA 60.673 50.000 0.00 0.00 36.20 4.69
5964 6138 1.659098 GCGACAAGTATTTCTGGACGG 59.341 52.381 0.00 0.00 36.20 4.79
5965 6139 2.092211 GTGCGACAAGTATTTCTGGACG 59.908 50.000 0.00 0.00 38.06 4.79
5966 6140 3.064207 TGTGCGACAAGTATTTCTGGAC 58.936 45.455 0.00 0.00 0.00 4.02
5967 6141 3.394674 TGTGCGACAAGTATTTCTGGA 57.605 42.857 0.00 0.00 0.00 3.86
5968 6142 4.481930 TTTGTGCGACAAGTATTTCTGG 57.518 40.909 0.00 0.00 39.53 3.86
5969 6143 4.853196 CCATTTGTGCGACAAGTATTTCTG 59.147 41.667 0.00 0.00 39.53 3.02
5970 6144 4.759693 TCCATTTGTGCGACAAGTATTTCT 59.240 37.500 0.00 0.00 39.53 2.52
5971 6145 5.041951 TCCATTTGTGCGACAAGTATTTC 57.958 39.130 0.00 0.00 39.53 2.17
5972 6146 5.643379 ATCCATTTGTGCGACAAGTATTT 57.357 34.783 0.00 0.00 39.53 1.40
5973 6147 6.751514 TTATCCATTTGTGCGACAAGTATT 57.248 33.333 0.00 0.00 39.53 1.89
5974 6148 6.751514 TTTATCCATTTGTGCGACAAGTAT 57.248 33.333 0.00 0.00 39.53 2.12
5975 6149 6.205853 AGTTTTATCCATTTGTGCGACAAGTA 59.794 34.615 0.00 0.00 39.53 2.24
5976 6150 5.009610 AGTTTTATCCATTTGTGCGACAAGT 59.990 36.000 0.00 0.00 39.53 3.16
5977 6151 5.343058 CAGTTTTATCCATTTGTGCGACAAG 59.657 40.000 0.00 0.00 39.53 3.16
5978 6152 5.218885 CAGTTTTATCCATTTGTGCGACAA 58.781 37.500 0.00 0.00 36.11 3.18
5979 6153 4.320861 CCAGTTTTATCCATTTGTGCGACA 60.321 41.667 0.00 0.00 0.00 4.35
5980 6154 4.083003 TCCAGTTTTATCCATTTGTGCGAC 60.083 41.667 0.00 0.00 0.00 5.19
5981 6155 4.075682 TCCAGTTTTATCCATTTGTGCGA 58.924 39.130 0.00 0.00 0.00 5.10
5982 6156 4.433186 TCCAGTTTTATCCATTTGTGCG 57.567 40.909 0.00 0.00 0.00 5.34
5983 6157 4.567959 GCATCCAGTTTTATCCATTTGTGC 59.432 41.667 0.00 0.00 0.00 4.57
5984 6158 5.722263 TGCATCCAGTTTTATCCATTTGTG 58.278 37.500 0.00 0.00 0.00 3.33
5985 6159 5.999205 TGCATCCAGTTTTATCCATTTGT 57.001 34.783 0.00 0.00 0.00 2.83
5986 6160 6.812998 AGATGCATCCAGTTTTATCCATTTG 58.187 36.000 23.06 0.00 0.00 2.32
5987 6161 8.537728 TTAGATGCATCCAGTTTTATCCATTT 57.462 30.769 23.06 1.25 0.00 2.32
5988 6162 8.537728 TTTAGATGCATCCAGTTTTATCCATT 57.462 30.769 23.06 1.91 0.00 3.16
5989 6163 8.416329 GTTTTAGATGCATCCAGTTTTATCCAT 58.584 33.333 23.06 2.35 0.00 3.41
5990 6164 7.615365 AGTTTTAGATGCATCCAGTTTTATCCA 59.385 33.333 23.06 0.00 0.00 3.41
5991 6165 8.000780 AGTTTTAGATGCATCCAGTTTTATCC 57.999 34.615 23.06 1.70 0.00 2.59
6019 6193 8.986991 GGAGGAATGGATGTATCTAGTCATATT 58.013 37.037 7.73 0.00 34.65 1.28
6020 6194 7.286546 CGGAGGAATGGATGTATCTAGTCATAT 59.713 40.741 7.73 0.00 34.65 1.78
6021 6195 6.603599 CGGAGGAATGGATGTATCTAGTCATA 59.396 42.308 7.73 0.00 34.65 2.15
6022 6196 5.420421 CGGAGGAATGGATGTATCTAGTCAT 59.580 44.000 7.73 1.02 34.65 3.06
6023 6197 4.767409 CGGAGGAATGGATGTATCTAGTCA 59.233 45.833 7.73 0.00 34.65 3.41
6024 6198 5.010933 TCGGAGGAATGGATGTATCTAGTC 58.989 45.833 0.00 0.00 32.62 2.59
6025 6199 4.767928 GTCGGAGGAATGGATGTATCTAGT 59.232 45.833 0.00 0.00 0.00 2.57
6026 6200 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
6027 6201 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
6028 6202 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
6029 6203 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
6030 6204 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
6031 6205 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
6032 6206 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
6033 6207 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
6034 6208 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
6035 6209 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
6036 6210 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
6037 6211 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
6038 6212 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
6039 6213 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
6040 6214 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
6041 6215 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
6042 6216 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
6043 6217 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
6044 6218 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
6045 6219 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
6046 6220 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6047 6221 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6048 6222 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6049 6223 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6050 6224 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6051 6225 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
6052 6226 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6053 6227 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6054 6228 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
6055 6229 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
6056 6230 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
6057 6231 1.664321 CTTGTACTCCCTCCGTCCGG 61.664 65.000 0.00 0.00 0.00 5.14
6058 6232 0.964358 ACTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
6059 6233 1.264295 AACTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
6060 6234 2.561858 AGAAACTTGTACTCCCTCCGTC 59.438 50.000 0.00 0.00 0.00 4.79
6061 6235 2.299297 CAGAAACTTGTACTCCCTCCGT 59.701 50.000 0.00 0.00 0.00 4.69
6062 6236 2.561419 TCAGAAACTTGTACTCCCTCCG 59.439 50.000 0.00 0.00 0.00 4.63
6063 6237 4.828072 ATCAGAAACTTGTACTCCCTCC 57.172 45.455 0.00 0.00 0.00 4.30
6064 6238 4.393371 GCAATCAGAAACTTGTACTCCCTC 59.607 45.833 0.00 0.00 0.00 4.30
6065 6239 4.202461 TGCAATCAGAAACTTGTACTCCCT 60.202 41.667 0.00 0.00 0.00 4.20
6066 6240 4.072131 TGCAATCAGAAACTTGTACTCCC 58.928 43.478 0.00 0.00 0.00 4.30
6067 6241 4.997395 TCTGCAATCAGAAACTTGTACTCC 59.003 41.667 0.00 0.00 45.69 3.85
6382 6556 8.588290 ATGCAAACCTAATAAGAACCAATACA 57.412 30.769 0.00 0.00 0.00 2.29
6398 6572 6.731292 ACCTTTCTAAAAAGATGCAAACCT 57.269 33.333 0.00 0.00 43.90 3.50
6453 6627 6.264067 GCATAGATTAGAAACAAAGGCTGGAT 59.736 38.462 0.00 0.00 0.00 3.41
6475 6649 3.301794 TGGGCAATACTTCAGATGCAT 57.698 42.857 0.00 0.00 40.51 3.96
6701 6879 4.982295 GGAACCTGAAAATGAAAAAGGACG 59.018 41.667 0.00 0.00 0.00 4.79
6705 6883 7.790823 ACATTGGAACCTGAAAATGAAAAAG 57.209 32.000 8.08 0.00 34.75 2.27
6887 7065 4.576463 TCAGAGTTGAAGAAGCCAGTTTTC 59.424 41.667 0.00 0.00 0.00 2.29
7403 7581 1.609061 GCAAACTACTGCTCCTCTGCA 60.609 52.381 0.00 0.00 39.34 4.41
7480 7658 1.060698 GCTAGCGAAAACCGTAAGCAG 59.939 52.381 0.00 0.00 43.09 4.24
7513 7691 3.161450 TACTGCGATCCCCCAGCC 61.161 66.667 0.00 0.00 32.37 4.85
7569 7747 5.405571 ACAAGCAAATCTAGTGTTAGTGTCG 59.594 40.000 0.00 0.00 0.00 4.35
7640 7838 5.803461 CGCTATGCACAAAGTAGTAGTACAA 59.197 40.000 10.33 0.00 0.00 2.41
7647 7845 2.271800 GCTCGCTATGCACAAAGTAGT 58.728 47.619 0.00 0.00 0.00 2.73
7650 7848 1.970917 GCGCTCGCTATGCACAAAGT 61.971 55.000 0.00 0.00 38.26 2.66
7651 7849 1.297158 GCGCTCGCTATGCACAAAG 60.297 57.895 0.00 0.00 38.26 2.77
7689 7890 2.578021 AGTGGGACTATGTTTGCATCCT 59.422 45.455 0.57 0.00 36.58 3.24
7691 7892 3.127548 CACAGTGGGACTATGTTTGCATC 59.872 47.826 0.00 0.00 36.58 3.91
7692 7893 3.084039 CACAGTGGGACTATGTTTGCAT 58.916 45.455 0.00 0.00 39.03 3.96
7693 7894 2.158682 ACACAGTGGGACTATGTTTGCA 60.159 45.455 0.00 0.00 30.54 4.08
7694 7895 2.504367 ACACAGTGGGACTATGTTTGC 58.496 47.619 0.00 0.00 30.54 3.68
7721 7930 6.894735 TCTGGGGGTAAATACACTTATCAA 57.105 37.500 0.00 0.00 0.00 2.57
7732 7941 3.365472 GAGTTTGCATCTGGGGGTAAAT 58.635 45.455 0.00 0.00 0.00 1.40
7839 8048 9.127277 TCTGTTTTAAGTTGCAGGTATAAACTT 57.873 29.630 13.35 9.18 44.23 2.66
7847 8056 4.523083 TCTGTCTGTTTTAAGTTGCAGGT 58.477 39.130 0.00 0.00 0.00 4.00
7848 8057 5.499139 TTCTGTCTGTTTTAAGTTGCAGG 57.501 39.130 0.00 0.00 0.00 4.85
7849 8058 7.008628 CAGTTTTCTGTCTGTTTTAAGTTGCAG 59.991 37.037 0.00 0.00 42.48 4.41
7850 8059 6.806249 CAGTTTTCTGTCTGTTTTAAGTTGCA 59.194 34.615 0.00 0.00 42.48 4.08
7851 8060 7.209595 CAGTTTTCTGTCTGTTTTAAGTTGC 57.790 36.000 0.00 0.00 42.48 4.17
7920 8234 5.029014 CGAGAACGAGTTGTATTAGAGGTG 58.971 45.833 0.00 0.00 42.66 4.00
7994 8308 1.854126 CAAAAGTTCAAACGGCTGCAG 59.146 47.619 10.11 10.11 0.00 4.41
8034 8674 2.420642 GCAAGACACATGAGAAGAGCA 58.579 47.619 0.00 0.00 0.00 4.26
8100 8740 9.533253 AAAGAGAAAATGAAACTAATGGTGTTG 57.467 29.630 0.00 0.00 0.00 3.33
8128 8769 6.832520 TGAGGTTTATGAAGCTTTGCATTA 57.167 33.333 0.00 0.00 43.27 1.90
8224 8865 5.488341 GCTTCCGAAGATATGGGCTTAATA 58.512 41.667 12.54 0.00 0.00 0.98
8323 8965 5.917087 TCAGGTTAGATATCCCAAAATCCCT 59.083 40.000 0.00 0.00 0.00 4.20
8340 8984 0.178955 TCACACGGGGACTCAGGTTA 60.179 55.000 0.00 0.00 0.00 2.85
8343 8987 0.324943 ATTTCACACGGGGACTCAGG 59.675 55.000 0.00 0.00 0.00 3.86
8347 8991 2.360801 CACAAAATTTCACACGGGGACT 59.639 45.455 0.00 0.00 0.00 3.85
8350 8994 3.444703 TTCACAAAATTTCACACGGGG 57.555 42.857 0.00 0.00 0.00 5.73
8381 9025 4.464951 TCTCTGCCACGAATAAGTTTCCTA 59.535 41.667 0.00 0.00 0.00 2.94
8389 9033 3.953712 TGTCTTCTCTGCCACGAATAA 57.046 42.857 0.00 0.00 0.00 1.40
8391 9035 2.839486 TTGTCTTCTCTGCCACGAAT 57.161 45.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.