Multiple sequence alignment - TraesCS7B01G232500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G232500 chr7B 100.000 2834 0 0 1 2834 435793305 435790472 0.000000e+00 5234.0
1 TraesCS7B01G232500 chr7B 89.773 352 26 6 2489 2834 516465561 516465214 2.590000e-120 442.0
2 TraesCS7B01G232500 chr7B 83.784 333 37 6 121 448 435805348 435805028 1.650000e-77 300.0
3 TraesCS7B01G232500 chr7B 97.521 121 3 0 1 121 392794240 392794360 1.030000e-49 207.0
4 TraesCS7B01G232500 chr7D 87.524 1531 100 35 506 1978 419770540 419769043 0.000000e+00 1685.0
5 TraesCS7B01G232500 chr7D 90.758 541 26 10 2294 2834 419768909 419768393 0.000000e+00 701.0
6 TraesCS7B01G232500 chr7D 86.173 405 39 9 121 511 419772636 419772235 3.380000e-114 422.0
7 TraesCS7B01G232500 chr7D 85.377 424 35 14 2414 2822 487740484 487740073 5.650000e-112 414.0
8 TraesCS7B01G232500 chr7D 83.871 155 18 4 2051 2200 203358735 203358887 1.060000e-29 141.0
9 TraesCS7B01G232500 chr7A 91.461 527 22 4 2293 2819 513413873 513414376 0.000000e+00 702.0
10 TraesCS7B01G232500 chr7A 85.762 604 69 9 1236 1834 513413019 513413610 8.620000e-175 623.0
11 TraesCS7B01G232500 chr7A 84.091 616 41 20 353 927 513412179 513412778 2.480000e-150 542.0
12 TraesCS7B01G232500 chr7A 88.556 367 33 5 2472 2834 555651558 555651197 1.210000e-118 436.0
13 TraesCS7B01G232500 chr7A 89.617 183 9 7 968 1143 513412779 513412958 1.020000e-54 224.0
14 TraesCS7B01G232500 chr7A 78.605 215 46 0 1601 1815 113796340 113796554 2.940000e-30 143.0
15 TraesCS7B01G232500 chr6D 94.884 215 11 0 2551 2765 449216359 449216573 1.260000e-88 337.0
16 TraesCS7B01G232500 chr6D 84.516 155 16 7 2051 2201 205268726 205268876 2.280000e-31 147.0
17 TraesCS7B01G232500 chr6A 94.419 215 12 0 2551 2765 595047463 595047677 5.850000e-87 331.0
18 TraesCS7B01G232500 chr6A 92.070 227 18 0 2551 2777 595076945 595076719 1.270000e-83 320.0
19 TraesCS7B01G232500 chr6B 92.760 221 16 0 2551 2771 680777540 680777760 1.270000e-83 320.0
20 TraesCS7B01G232500 chr6B 89.209 139 8 4 2069 2206 690756142 690756010 1.750000e-37 167.0
21 TraesCS7B01G232500 chr6B 91.057 123 5 4 2100 2218 540708090 540708210 8.120000e-36 161.0
22 TraesCS7B01G232500 chr5B 97.541 122 3 0 1 122 582179554 582179675 2.860000e-50 209.0
23 TraesCS7B01G232500 chr5B 91.803 122 3 5 2081 2201 204329504 204329619 2.260000e-36 163.0
24 TraesCS7B01G232500 chr2B 97.521 121 3 0 1 121 382510802 382510682 1.030000e-49 207.0
25 TraesCS7B01G232500 chr2B 92.029 138 11 0 1 138 794343126 794343263 8.010000e-46 195.0
26 TraesCS7B01G232500 chr2B 89.051 137 8 3 2066 2201 356544680 356544810 2.260000e-36 163.0
27 TraesCS7B01G232500 chr2B 87.879 66 8 0 1178 1243 704575373 704575438 8.420000e-11 78.7
28 TraesCS7B01G232500 chrUn 97.500 120 3 0 1 120 60137305 60137186 3.700000e-49 206.0
29 TraesCS7B01G232500 chr4B 97.500 120 3 0 1 120 113283860 113283979 3.700000e-49 206.0
30 TraesCS7B01G232500 chr4B 96.000 125 5 0 1 125 109444489 109444365 1.330000e-48 204.0
31 TraesCS7B01G232500 chr4B 85.165 182 24 1 956 1134 649490436 649490617 1.730000e-42 183.0
32 TraesCS7B01G232500 chr3B 96.774 124 3 1 1 124 410799336 410799214 3.700000e-49 206.0
33 TraesCS7B01G232500 chr3B 89.610 154 16 0 983 1136 755573774 755573927 2.230000e-46 196.0
34 TraesCS7B01G232500 chr3B 79.412 306 38 18 957 1243 755708085 755708384 2.880000e-45 193.0
35 TraesCS7B01G232500 chr1B 97.500 120 3 0 1 120 65496300 65496181 3.700000e-49 206.0
36 TraesCS7B01G232500 chr1B 86.420 162 12 6 2047 2200 426854631 426854790 4.860000e-38 169.0
37 TraesCS7B01G232500 chr3D 90.789 152 12 2 987 1136 566423709 566423558 4.790000e-48 202.0
38 TraesCS7B01G232500 chr3D 85.787 197 19 4 957 1144 566301955 566301759 1.720000e-47 200.0
39 TraesCS7B01G232500 chr3D 96.970 33 1 0 1206 1238 566423514 566423482 3.940000e-04 56.5
40 TraesCS7B01G232500 chr3A 88.816 152 15 2 987 1136 700891235 700891386 4.820000e-43 185.0
41 TraesCS7B01G232500 chr5A 84.865 185 19 5 956 1134 688242425 688242606 8.070000e-41 178.0
42 TraesCS7B01G232500 chr4D 84.358 179 26 2 956 1134 503668328 503668504 1.040000e-39 174.0
43 TraesCS7B01G232500 chr2D 83.871 155 18 4 2047 2200 235074607 235074459 1.060000e-29 141.0
44 TraesCS7B01G232500 chr2D 83.648 159 16 7 2051 2201 493778007 493778163 1.060000e-29 141.0
45 TraesCS7B01G232500 chr2D 90.909 66 6 0 1178 1243 584624996 584625061 3.890000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G232500 chr7B 435790472 435793305 2833 True 5234.00 5234 100.000000 1 2834 1 chr7B.!!$R1 2833
1 TraesCS7B01G232500 chr7D 419768393 419772636 4243 True 936.00 1685 88.151667 121 2834 3 chr7D.!!$R2 2713
2 TraesCS7B01G232500 chr7A 513412179 513414376 2197 False 522.75 702 87.732750 353 2819 4 chr7A.!!$F2 2466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 2421 0.179097 GAAGCAGGCTAGGACGAAGG 60.179 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 3754 0.036388 AGGTGGTGAAGTATGCGTGG 60.036 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.708386 GGGGAGATAATCGTCTCGTG 57.292 55.000 0.00 0.00 44.43 4.35
20 21 1.336056 GGGGAGATAATCGTCTCGTGC 60.336 57.143 0.00 0.00 44.43 5.34
21 22 1.336056 GGGAGATAATCGTCTCGTGCC 60.336 57.143 0.00 0.00 44.43 5.01
22 23 1.337071 GGAGATAATCGTCTCGTGCCA 59.663 52.381 0.00 0.00 44.43 4.92
23 24 2.223735 GGAGATAATCGTCTCGTGCCAA 60.224 50.000 0.00 0.00 44.43 4.52
24 25 3.444916 GAGATAATCGTCTCGTGCCAAA 58.555 45.455 0.00 0.00 35.70 3.28
25 26 3.448686 AGATAATCGTCTCGTGCCAAAG 58.551 45.455 0.00 0.00 0.00 2.77
26 27 2.004583 TAATCGTCTCGTGCCAAAGG 57.995 50.000 0.00 0.00 0.00 3.11
27 28 0.320374 AATCGTCTCGTGCCAAAGGA 59.680 50.000 0.00 0.00 0.00 3.36
28 29 0.537188 ATCGTCTCGTGCCAAAGGAT 59.463 50.000 0.00 0.00 0.00 3.24
29 30 0.389817 TCGTCTCGTGCCAAAGGATG 60.390 55.000 0.00 0.00 0.00 3.51
30 31 0.389817 CGTCTCGTGCCAAAGGATGA 60.390 55.000 0.00 0.00 0.00 2.92
31 32 1.808411 GTCTCGTGCCAAAGGATGAA 58.192 50.000 0.00 0.00 0.00 2.57
32 33 2.359900 GTCTCGTGCCAAAGGATGAAT 58.640 47.619 0.00 0.00 0.00 2.57
33 34 2.352960 GTCTCGTGCCAAAGGATGAATC 59.647 50.000 0.00 0.00 0.00 2.52
34 35 2.237143 TCTCGTGCCAAAGGATGAATCT 59.763 45.455 0.00 0.00 0.00 2.40
35 36 2.611292 CTCGTGCCAAAGGATGAATCTC 59.389 50.000 0.00 0.00 0.00 2.75
36 37 1.672881 CGTGCCAAAGGATGAATCTCC 59.327 52.381 0.00 0.00 35.37 3.71
37 38 1.672881 GTGCCAAAGGATGAATCTCCG 59.327 52.381 0.00 0.00 40.46 4.63
38 39 1.559219 TGCCAAAGGATGAATCTCCGA 59.441 47.619 0.00 0.00 40.46 4.55
39 40 2.026356 TGCCAAAGGATGAATCTCCGAA 60.026 45.455 0.00 0.00 40.46 4.30
40 41 2.615912 GCCAAAGGATGAATCTCCGAAG 59.384 50.000 0.00 0.00 40.46 3.79
56 57 3.545911 AGGAACTTAACGCACGCG 58.454 55.556 10.36 10.36 40.48 6.01
57 58 1.007038 AGGAACTTAACGCACGCGA 60.007 52.632 19.66 0.00 37.06 5.87
58 59 0.389426 AGGAACTTAACGCACGCGAT 60.389 50.000 19.66 9.16 37.06 4.58
59 60 0.441145 GGAACTTAACGCACGCGATT 59.559 50.000 19.66 10.93 42.83 3.34
60 61 1.655099 GGAACTTAACGCACGCGATTA 59.345 47.619 19.66 9.96 42.83 1.75
61 62 2.284855 GGAACTTAACGCACGCGATTAG 60.285 50.000 19.66 12.11 42.83 1.73
62 63 1.986698 ACTTAACGCACGCGATTAGT 58.013 45.000 19.66 12.80 42.83 2.24
63 64 1.916000 ACTTAACGCACGCGATTAGTC 59.084 47.619 19.66 0.00 42.83 2.59
64 65 1.254570 CTTAACGCACGCGATTAGTCC 59.745 52.381 19.66 0.00 42.83 3.85
65 66 0.862701 TAACGCACGCGATTAGTCCG 60.863 55.000 19.66 6.67 42.83 4.79
73 74 2.749541 CGATTAGTCCGCACAAGCA 58.250 52.632 0.00 0.00 42.27 3.91
74 75 1.290203 CGATTAGTCCGCACAAGCAT 58.710 50.000 0.00 0.00 42.27 3.79
75 76 1.665679 CGATTAGTCCGCACAAGCATT 59.334 47.619 0.00 0.00 42.27 3.56
89 90 4.443913 CAAGCATTGTCATCAATCACCA 57.556 40.909 0.00 0.00 42.34 4.17
90 91 4.811908 CAAGCATTGTCATCAATCACCAA 58.188 39.130 0.00 0.00 42.34 3.67
91 92 5.231702 CAAGCATTGTCATCAATCACCAAA 58.768 37.500 0.00 0.00 42.34 3.28
92 93 5.471556 AGCATTGTCATCAATCACCAAAA 57.528 34.783 0.00 0.00 41.66 2.44
93 94 5.232463 AGCATTGTCATCAATCACCAAAAC 58.768 37.500 0.00 0.00 41.66 2.43
94 95 4.989797 GCATTGTCATCAATCACCAAAACA 59.010 37.500 0.00 0.00 41.66 2.83
95 96 5.640357 GCATTGTCATCAATCACCAAAACAT 59.360 36.000 0.00 0.00 41.66 2.71
96 97 6.183360 GCATTGTCATCAATCACCAAAACATC 60.183 38.462 0.00 0.00 41.66 3.06
97 98 6.653526 TTGTCATCAATCACCAAAACATCT 57.346 33.333 0.00 0.00 0.00 2.90
98 99 6.653526 TGTCATCAATCACCAAAACATCTT 57.346 33.333 0.00 0.00 0.00 2.40
99 100 6.448852 TGTCATCAATCACCAAAACATCTTG 58.551 36.000 0.00 0.00 0.00 3.02
112 113 6.930722 CCAAAACATCTTGGGGATAAATATGC 59.069 38.462 0.00 0.00 41.96 3.14
113 114 6.670695 AAACATCTTGGGGATAAATATGCC 57.329 37.500 2.57 2.57 42.77 4.40
123 124 4.935808 GGGATAAATATGCCCTTACAGACG 59.064 45.833 0.00 0.00 38.14 4.18
124 125 5.512576 GGGATAAATATGCCCTTACAGACGT 60.513 44.000 0.00 0.00 38.14 4.34
125 126 5.995897 GGATAAATATGCCCTTACAGACGTT 59.004 40.000 0.00 0.00 0.00 3.99
154 155 1.279840 GAACACTCGTTGCCACTGC 59.720 57.895 0.00 0.00 34.75 4.40
161 162 2.769539 CGTTGCCACTGCCACACAA 61.770 57.895 0.00 0.00 32.85 3.33
177 178 0.743688 ACAAGGCATTTGCGAACACA 59.256 45.000 0.00 0.00 43.26 3.72
178 179 1.130955 CAAGGCATTTGCGAACACAC 58.869 50.000 0.00 0.00 43.26 3.82
182 183 1.945522 CATTTGCGAACACACGGGA 59.054 52.632 0.00 0.00 0.00 5.14
192 193 1.337118 ACACACGGGATGGCATTTTT 58.663 45.000 0.00 0.00 0.00 1.94
193 194 2.520069 ACACACGGGATGGCATTTTTA 58.480 42.857 0.00 0.00 0.00 1.52
194 195 2.491693 ACACACGGGATGGCATTTTTAG 59.508 45.455 0.00 0.00 0.00 1.85
195 196 2.491693 CACACGGGATGGCATTTTTAGT 59.508 45.455 0.00 0.00 0.00 2.24
196 197 2.491693 ACACGGGATGGCATTTTTAGTG 59.508 45.455 0.00 10.58 0.00 2.74
197 198 2.099405 ACGGGATGGCATTTTTAGTGG 58.901 47.619 0.00 0.00 0.00 4.00
202 203 4.262851 GGGATGGCATTTTTAGTGGTTTGT 60.263 41.667 0.00 0.00 0.00 2.83
208 209 4.873259 GCATTTTTAGTGGTTTGTGTGGTT 59.127 37.500 0.00 0.00 0.00 3.67
210 211 5.470047 TTTTTAGTGGTTTGTGTGGTTGT 57.530 34.783 0.00 0.00 0.00 3.32
211 212 4.442375 TTTAGTGGTTTGTGTGGTTGTG 57.558 40.909 0.00 0.00 0.00 3.33
240 241 6.158598 TCAGAAAAGCATGGCAATTCTTTAC 58.841 36.000 0.00 0.00 34.95 2.01
241 242 5.927689 CAGAAAAGCATGGCAATTCTTTACA 59.072 36.000 0.00 0.00 34.95 2.41
255 260 7.861872 GCAATTCTTTACATTTTGGTGCAATTT 59.138 29.630 0.00 0.00 0.00 1.82
256 261 9.733219 CAATTCTTTACATTTTGGTGCAATTTT 57.267 25.926 0.00 0.00 0.00 1.82
260 265 6.517914 TTACATTTTGGTGCAATTTTCGTC 57.482 33.333 0.00 0.00 0.00 4.20
271 276 4.038042 TGCAATTTTCGTCAATAACCACCA 59.962 37.500 0.00 0.00 0.00 4.17
273 278 5.288472 GCAATTTTCGTCAATAACCACCATC 59.712 40.000 0.00 0.00 0.00 3.51
279 284 4.083003 TCGTCAATAACCACCATCTTTTGC 60.083 41.667 0.00 0.00 0.00 3.68
282 287 6.404184 CGTCAATAACCACCATCTTTTGCATA 60.404 38.462 0.00 0.00 0.00 3.14
293 299 4.299586 TCTTTTGCATAGGGTCATGTGA 57.700 40.909 0.00 0.00 0.00 3.58
307 313 2.047179 GTGACTCTGGGGGCGTTC 60.047 66.667 0.00 0.00 0.00 3.95
318 324 2.280592 GGCGTTCGCCGGGATATT 60.281 61.111 20.05 0.00 41.76 1.28
344 350 2.241880 CGAACGTCAGCCACCGTTT 61.242 57.895 6.38 0.00 46.29 3.60
347 353 1.392510 GAACGTCAGCCACCGTTTATC 59.607 52.381 6.38 0.00 46.29 1.75
351 357 1.802365 GTCAGCCACCGTTTATCGTTT 59.198 47.619 0.00 0.00 37.94 3.60
381 387 0.249120 TGGTGTTATCACGCTCCCAG 59.751 55.000 0.00 0.00 44.68 4.45
382 388 0.535335 GGTGTTATCACGCTCCCAGA 59.465 55.000 0.00 0.00 44.68 3.86
387 393 3.134623 TGTTATCACGCTCCCAGAATCAT 59.865 43.478 0.00 0.00 0.00 2.45
396 403 3.747069 GCTCCCAGAATCATCCCTTCTTC 60.747 52.174 0.00 0.00 30.60 2.87
407 414 5.443283 TCATCCCTTCTTCTGGAATCATTG 58.557 41.667 0.00 0.00 33.54 2.82
449 456 5.286438 GTGCAAGGTTAAAGGGTAAAGTTG 58.714 41.667 0.00 0.00 0.00 3.16
519 2233 3.377253 TGGGACCTCTTACTCGTACAT 57.623 47.619 0.00 0.00 0.00 2.29
690 2421 0.179097 GAAGCAGGCTAGGACGAAGG 60.179 60.000 0.00 0.00 0.00 3.46
836 2571 2.674380 CAACCAGGCAGAGGCACC 60.674 66.667 0.00 0.00 43.71 5.01
917 2687 4.196778 TCACCCCGCACAAGCCAA 62.197 61.111 0.00 0.00 37.52 4.52
918 2688 3.673484 CACCCCGCACAAGCCAAG 61.673 66.667 0.00 0.00 37.52 3.61
920 2690 2.033448 CCCCGCACAAGCCAAGTA 59.967 61.111 0.00 0.00 37.52 2.24
927 2697 1.268539 GCACAAGCCAAGTACACACAC 60.269 52.381 0.00 0.00 33.58 3.82
955 2725 2.038975 AGACCTTGCCCGGCTAGA 59.961 61.111 20.95 1.80 33.57 2.43
958 2728 2.125106 CCTTGCCCGGCTAGACAC 60.125 66.667 20.95 0.00 33.57 3.67
1151 2932 1.957822 TACTCCCTCCCCCTGCTACC 61.958 65.000 0.00 0.00 0.00 3.18
1177 2977 9.447157 CAATTTCACTCTCCTTTCTTCTAATCT 57.553 33.333 0.00 0.00 0.00 2.40
1182 2982 8.919145 TCACTCTCCTTTCTTCTAATCTAATCC 58.081 37.037 0.00 0.00 0.00 3.01
1183 2983 8.923270 CACTCTCCTTTCTTCTAATCTAATCCT 58.077 37.037 0.00 0.00 0.00 3.24
1184 2984 9.500701 ACTCTCCTTTCTTCTAATCTAATCCTT 57.499 33.333 0.00 0.00 0.00 3.36
1208 3008 1.239347 GAGTGTCCTCCCTTTTGTGC 58.761 55.000 0.00 0.00 0.00 4.57
1228 3028 4.208873 GTGCGTTTTCTTGCAAATTCATGA 59.791 37.500 0.00 0.00 43.75 3.07
1249 3049 3.579709 AGCATCACTCGAGTAACAAGTG 58.420 45.455 19.57 11.38 41.38 3.16
1273 3076 1.063174 GCAAGTTGATGTCATCGAGGC 59.937 52.381 7.16 6.88 0.00 4.70
1285 3088 0.032678 ATCGAGGCCTATGAACTGCG 59.967 55.000 4.42 1.69 0.00 5.18
1290 3093 1.151668 GGCCTATGAACTGCGCATAG 58.848 55.000 12.24 9.47 42.97 2.23
1321 3124 6.625873 AATTTCTTGACCACTCTTCAGAAC 57.374 37.500 0.00 0.00 0.00 3.01
1336 3139 0.034616 AGAACTCAGCTGCCTGACAC 59.965 55.000 9.47 0.00 42.98 3.67
1338 3141 2.046507 CTCAGCTGCCTGACACCC 60.047 66.667 9.47 0.00 42.98 4.61
1354 3157 3.946558 GACACCCTCTAACGAGTGTATCT 59.053 47.826 0.00 0.00 35.43 1.98
1355 3158 5.108187 ACACCCTCTAACGAGTGTATCTA 57.892 43.478 0.00 0.00 35.43 1.98
1356 3159 5.692928 ACACCCTCTAACGAGTGTATCTAT 58.307 41.667 0.00 0.00 35.43 1.98
1371 3174 7.306013 AGTGTATCTATCATGGTCTCCCTTTA 58.694 38.462 0.00 0.00 0.00 1.85
1385 3188 5.030147 TCTCCCTTTATTTCAGCTACCTGA 58.970 41.667 0.00 0.00 46.03 3.86
1397 3200 1.933853 GCTACCTGAATACAGCGTTGG 59.066 52.381 3.74 0.00 42.25 3.77
1398 3201 2.677037 GCTACCTGAATACAGCGTTGGT 60.677 50.000 3.74 0.00 42.25 3.67
1459 3262 5.451798 GGACATCTTTGCTTTGAGGAACAAA 60.452 40.000 0.00 0.00 44.79 2.83
1472 3275 4.515191 TGAGGAACAAAAAGGATCTTCACG 59.485 41.667 0.00 0.00 0.00 4.35
1474 3277 3.253432 GGAACAAAAAGGATCTTCACGCT 59.747 43.478 0.00 0.00 0.00 5.07
1476 3279 3.476552 ACAAAAAGGATCTTCACGCTGA 58.523 40.909 0.00 0.00 0.00 4.26
1477 3280 3.499918 ACAAAAAGGATCTTCACGCTGAG 59.500 43.478 0.00 0.00 0.00 3.35
1487 3290 2.357517 ACGCTGAGCCGGAACTTG 60.358 61.111 5.05 0.00 0.00 3.16
1493 3296 0.320421 TGAGCCGGAACTTGTACTGC 60.320 55.000 5.05 0.00 0.00 4.40
1496 3299 1.019805 GCCGGAACTTGTACTGCTCC 61.020 60.000 5.05 0.00 0.00 4.70
1497 3300 0.736325 CCGGAACTTGTACTGCTCCG 60.736 60.000 17.93 17.93 46.78 4.63
1499 3302 1.429463 GGAACTTGTACTGCTCCGTG 58.571 55.000 0.00 0.00 0.00 4.94
1500 3303 0.790814 GAACTTGTACTGCTCCGTGC 59.209 55.000 0.00 0.00 43.25 5.34
1501 3304 0.602905 AACTTGTACTGCTCCGTGCC 60.603 55.000 0.00 0.00 42.00 5.01
1519 3322 1.515954 CATCGGCGACTGGGTAAGT 59.484 57.895 13.76 0.00 43.85 2.24
1531 3335 4.704965 ACTGGGTAAGTCTGTTTCACTTC 58.295 43.478 0.00 0.00 31.64 3.01
1547 3351 2.148768 ACTTCGGGTGAAATCGTTTCC 58.851 47.619 7.64 0.00 38.90 3.13
1552 3356 2.095919 CGGGTGAAATCGTTTCCTTGAC 60.096 50.000 7.64 1.35 38.90 3.18
1559 3363 0.038526 TCGTTTCCTTGACTCGAGCC 60.039 55.000 13.61 0.65 0.00 4.70
1563 3367 0.038526 TTCCTTGACTCGAGCCGTTC 60.039 55.000 13.61 2.77 0.00 3.95
1566 3370 1.063806 CTTGACTCGAGCCGTTCTTG 58.936 55.000 13.61 0.00 0.00 3.02
1567 3371 0.319555 TTGACTCGAGCCGTTCTTGG 60.320 55.000 13.61 0.00 0.00 3.61
1568 3372 1.176619 TGACTCGAGCCGTTCTTGGA 61.177 55.000 13.61 0.00 0.00 3.53
1569 3373 0.038526 GACTCGAGCCGTTCTTGGAA 60.039 55.000 13.61 0.00 0.00 3.53
1587 3391 2.509964 GGAAGGAATCTTGGGCTAGGAA 59.490 50.000 0.00 0.00 32.52 3.36
1593 3397 4.393834 GAATCTTGGGCTAGGAAAGATCC 58.606 47.826 0.00 0.00 46.98 3.36
1613 3417 1.030488 ACCCGAGTGATCACGTCGAT 61.030 55.000 31.47 22.30 35.52 3.59
1614 3418 0.100682 CCCGAGTGATCACGTCGATT 59.899 55.000 31.47 13.93 35.52 3.34
1635 3439 1.796796 GAATGCGTTGCAGGTCCTC 59.203 57.895 0.00 0.00 43.65 3.71
1691 3495 3.739519 GCTAGCGTGACCATCTTCTTCAT 60.740 47.826 0.00 0.00 0.00 2.57
1713 3517 2.668280 GGACGTGAAGTTCTGCGCC 61.668 63.158 4.18 14.56 0.00 6.53
1749 3553 4.742201 TGCGGCCAGTTCGAGCTC 62.742 66.667 2.24 2.73 0.00 4.09
1816 3620 0.250727 TTTCTCCGGGTTCTGGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
1818 3622 1.672356 CTCCGGGTTCTGGCTTGTG 60.672 63.158 0.00 0.00 0.00 3.33
1844 3676 4.341487 TCCTTCTTCTAGAATCACCGTCA 58.659 43.478 5.44 0.00 33.13 4.35
1851 3683 0.109873 AGAATCACCGTCACGTCGTC 60.110 55.000 0.00 0.00 0.00 4.20
1853 3685 2.482296 AATCACCGTCACGTCGTCCC 62.482 60.000 0.00 0.00 0.00 4.46
1857 3689 1.373748 CCGTCACGTCGTCCCAATT 60.374 57.895 0.00 0.00 0.00 2.32
1862 3694 0.511221 CACGTCGTCCCAATTGTCAC 59.489 55.000 4.43 0.00 0.00 3.67
1870 3702 1.630369 TCCCAATTGTCACTCAGGAGG 59.370 52.381 4.43 0.00 0.00 4.30
1871 3703 1.340405 CCCAATTGTCACTCAGGAGGG 60.340 57.143 4.43 0.00 0.00 4.30
1872 3704 1.352352 CCAATTGTCACTCAGGAGGGT 59.648 52.381 4.43 0.00 32.51 4.34
1884 3716 2.009774 CAGGAGGGTAAATCAGTTGCG 58.990 52.381 0.00 0.00 0.00 4.85
1885 3717 1.906574 AGGAGGGTAAATCAGTTGCGA 59.093 47.619 0.00 0.00 0.00 5.10
1886 3718 2.505819 AGGAGGGTAAATCAGTTGCGAT 59.494 45.455 0.00 0.00 0.00 4.58
1893 3725 2.105006 AATCAGTTGCGATGTGCTCT 57.895 45.000 0.00 0.00 46.63 4.09
1908 3740 3.181455 TGTGCTCTGGACACACTTGTTAT 60.181 43.478 0.00 0.00 42.88 1.89
1909 3741 3.187227 GTGCTCTGGACACACTTGTTATG 59.813 47.826 0.00 0.00 35.47 1.90
1920 3752 8.995220 GGACACACTTGTTATGTTTCAGTTATA 58.005 33.333 0.00 0.00 35.47 0.98
1922 3754 8.504005 ACACACTTGTTATGTTTCAGTTATAGC 58.496 33.333 0.00 0.00 28.43 2.97
1924 3756 7.663905 ACACTTGTTATGTTTCAGTTATAGCCA 59.336 33.333 0.00 0.00 0.00 4.75
1929 3761 3.605634 TGTTTCAGTTATAGCCACGCAT 58.394 40.909 0.00 0.00 0.00 4.73
1930 3762 4.760878 TGTTTCAGTTATAGCCACGCATA 58.239 39.130 0.00 0.00 0.00 3.14
1940 3772 1.644786 GCCACGCATACTTCACCACC 61.645 60.000 0.00 0.00 0.00 4.61
1943 3782 0.685097 ACGCATACTTCACCACCTGT 59.315 50.000 0.00 0.00 0.00 4.00
1955 3794 4.513442 TCACCACCTGTTACATAGATTGC 58.487 43.478 0.00 0.00 0.00 3.56
1958 3797 4.719773 ACCACCTGTTACATAGATTGCCTA 59.280 41.667 0.00 0.00 0.00 3.93
1978 3819 6.261603 TGCCTATTTGATAGCTCATCTTTGTG 59.738 38.462 0.00 0.00 34.46 3.33
1980 3821 7.637229 CCTATTTGATAGCTCATCTTTGTGTG 58.363 38.462 0.00 0.00 34.46 3.82
1981 3822 4.952262 TTGATAGCTCATCTTTGTGTGC 57.048 40.909 0.00 0.00 38.51 4.57
1982 3823 3.273434 TGATAGCTCATCTTTGTGTGCC 58.727 45.455 0.00 0.00 38.90 5.01
1984 3825 0.250467 AGCTCATCTTTGTGTGCCGT 60.250 50.000 0.00 0.00 38.90 5.68
1985 3826 0.593128 GCTCATCTTTGTGTGCCGTT 59.407 50.000 0.00 0.00 33.68 4.44
1986 3827 1.001378 GCTCATCTTTGTGTGCCGTTT 60.001 47.619 0.00 0.00 33.68 3.60
1987 3828 2.918131 GCTCATCTTTGTGTGCCGTTTC 60.918 50.000 0.00 0.00 33.68 2.78
1989 3830 2.948979 TCATCTTTGTGTGCCGTTTCTT 59.051 40.909 0.00 0.00 0.00 2.52
1991 3832 3.143807 TCTTTGTGTGCCGTTTCTTTG 57.856 42.857 0.00 0.00 0.00 2.77
1992 3833 2.490115 TCTTTGTGTGCCGTTTCTTTGT 59.510 40.909 0.00 0.00 0.00 2.83
1993 3834 2.270275 TTGTGTGCCGTTTCTTTGTG 57.730 45.000 0.00 0.00 0.00 3.33
1994 3835 1.454201 TGTGTGCCGTTTCTTTGTGA 58.546 45.000 0.00 0.00 0.00 3.58
1996 3837 2.425312 TGTGTGCCGTTTCTTTGTGAAT 59.575 40.909 0.00 0.00 34.24 2.57
1997 3838 3.119316 TGTGTGCCGTTTCTTTGTGAATT 60.119 39.130 0.00 0.00 34.24 2.17
1998 3839 3.485743 GTGTGCCGTTTCTTTGTGAATTC 59.514 43.478 0.00 0.00 34.24 2.17
1999 3840 3.380004 TGTGCCGTTTCTTTGTGAATTCT 59.620 39.130 7.05 0.00 34.24 2.40
2000 3841 3.730715 GTGCCGTTTCTTTGTGAATTCTG 59.269 43.478 7.05 0.00 34.24 3.02
2001 3842 3.243367 TGCCGTTTCTTTGTGAATTCTGG 60.243 43.478 7.05 0.00 34.24 3.86
2002 3843 3.004315 GCCGTTTCTTTGTGAATTCTGGA 59.996 43.478 7.05 0.00 34.24 3.86
2003 3844 4.787598 CCGTTTCTTTGTGAATTCTGGAG 58.212 43.478 7.05 0.29 34.24 3.86
2004 3845 4.275936 CCGTTTCTTTGTGAATTCTGGAGT 59.724 41.667 7.05 0.00 34.24 3.85
2005 3846 5.207768 CGTTTCTTTGTGAATTCTGGAGTG 58.792 41.667 7.05 0.00 34.24 3.51
2007 3848 6.564328 GTTTCTTTGTGAATTCTGGAGTGTT 58.436 36.000 7.05 0.00 34.24 3.32
2008 3849 7.466725 CGTTTCTTTGTGAATTCTGGAGTGTTA 60.467 37.037 7.05 0.00 34.24 2.41
2009 3850 7.873719 TTCTTTGTGAATTCTGGAGTGTTAA 57.126 32.000 7.05 0.00 0.00 2.01
2010 3851 7.873719 TCTTTGTGAATTCTGGAGTGTTAAA 57.126 32.000 7.05 0.00 0.00 1.52
2011 3852 8.287439 TCTTTGTGAATTCTGGAGTGTTAAAA 57.713 30.769 7.05 0.00 0.00 1.52
2012 3853 8.188139 TCTTTGTGAATTCTGGAGTGTTAAAAC 58.812 33.333 7.05 0.00 0.00 2.43
2014 3855 7.581213 TGTGAATTCTGGAGTGTTAAAACAT 57.419 32.000 7.05 0.00 41.59 2.71
2016 3857 9.295825 TGTGAATTCTGGAGTGTTAAAACATAT 57.704 29.630 7.05 0.00 41.59 1.78
2019 3860 9.788960 GAATTCTGGAGTGTTAAAACATATTCC 57.211 33.333 0.00 13.02 41.59 3.01
2020 3861 7.696992 TTCTGGAGTGTTAAAACATATTCCC 57.303 36.000 15.44 7.64 41.59 3.97
2021 3862 7.027874 TCTGGAGTGTTAAAACATATTCCCT 57.972 36.000 15.44 2.75 41.59 4.20
2022 3863 7.466804 TCTGGAGTGTTAAAACATATTCCCTT 58.533 34.615 15.44 0.00 41.59 3.95
2023 3864 7.610305 TCTGGAGTGTTAAAACATATTCCCTTC 59.390 37.037 15.44 2.62 41.59 3.46
2057 3898 8.925338 ACGGAACAAAATTCCTATATACTCTCT 58.075 33.333 4.28 0.00 36.45 3.10
2058 3899 9.413048 CGGAACAAAATTCCTATATACTCTCTC 57.587 37.037 4.28 0.00 36.45 3.20
2114 3955 9.725019 AACAATAAGTGAATGAGTGAATCTACA 57.275 29.630 0.00 0.00 0.00 2.74
2115 3956 9.155975 ACAATAAGTGAATGAGTGAATCTACAC 57.844 33.333 0.00 0.00 40.60 2.90
2146 3987 9.639601 AAATATGTCTATGTACATCCGTATGTG 57.360 33.333 12.68 0.00 45.99 3.21
2147 3988 5.447624 TGTCTATGTACATCCGTATGTGG 57.552 43.478 12.68 0.00 45.99 4.17
2148 3989 4.891168 TGTCTATGTACATCCGTATGTGGT 59.109 41.667 12.68 0.00 45.99 4.16
2149 3990 6.063404 TGTCTATGTACATCCGTATGTGGTA 58.937 40.000 12.68 0.00 45.99 3.25
2150 3991 6.206048 TGTCTATGTACATCCGTATGTGGTAG 59.794 42.308 12.68 0.00 45.99 3.18
2151 3992 6.206243 GTCTATGTACATCCGTATGTGGTAGT 59.794 42.308 12.68 0.00 45.99 2.73
2152 3993 4.906065 TGTACATCCGTATGTGGTAGTC 57.094 45.455 3.56 0.00 45.99 2.59
2153 3994 3.633525 TGTACATCCGTATGTGGTAGTCC 59.366 47.826 3.56 0.00 45.99 3.85
2154 3995 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2155 3996 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2156 3997 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2157 3998 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2158 3999 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2159 4000 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2160 4001 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2161 4002 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2162 4003 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2163 4004 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2164 4005 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2165 4006 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2166 4007 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2167 4008 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2168 4009 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2169 4010 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2170 4011 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2171 4012 9.231297 TGGTAGTCCATTTGAAATCTCTAAAAG 57.769 33.333 0.00 0.00 39.03 2.27
2172 4013 9.449719 GGTAGTCCATTTGAAATCTCTAAAAGA 57.550 33.333 0.00 0.00 38.72 2.52
2174 4015 8.924511 AGTCCATTTGAAATCTCTAAAAGACA 57.075 30.769 0.00 0.00 36.65 3.41
2175 4016 9.354673 AGTCCATTTGAAATCTCTAAAAGACAA 57.645 29.630 0.00 0.00 36.65 3.18
2176 4017 9.965824 GTCCATTTGAAATCTCTAAAAGACAAA 57.034 29.630 0.00 0.00 36.65 2.83
2193 4034 6.780706 AGACAAATATATTTAGGAACGGCG 57.219 37.500 10.34 4.80 0.00 6.46
2194 4035 5.699458 AGACAAATATATTTAGGAACGGCGG 59.301 40.000 13.24 0.00 0.00 6.13
2195 4036 4.758165 ACAAATATATTTAGGAACGGCGGG 59.242 41.667 13.24 0.00 0.00 6.13
2196 4037 4.895668 AATATATTTAGGAACGGCGGGA 57.104 40.909 13.24 0.00 0.00 5.14
2197 4038 2.833631 ATATTTAGGAACGGCGGGAG 57.166 50.000 13.24 0.00 0.00 4.30
2198 4039 1.488390 TATTTAGGAACGGCGGGAGT 58.512 50.000 13.24 0.00 0.00 3.85
2199 4040 1.488390 ATTTAGGAACGGCGGGAGTA 58.512 50.000 13.24 0.00 0.00 2.59
2200 4041 1.488390 TTTAGGAACGGCGGGAGTAT 58.512 50.000 13.24 0.00 0.00 2.12
2201 4042 0.748450 TTAGGAACGGCGGGAGTATG 59.252 55.000 13.24 0.00 0.00 2.39
2202 4043 0.396139 TAGGAACGGCGGGAGTATGT 60.396 55.000 13.24 0.00 0.00 2.29
2203 4044 1.520787 GGAACGGCGGGAGTATGTG 60.521 63.158 13.24 0.00 0.00 3.21
2204 4045 1.514087 GAACGGCGGGAGTATGTGA 59.486 57.895 13.24 0.00 0.00 3.58
2205 4046 0.104304 GAACGGCGGGAGTATGTGAT 59.896 55.000 13.24 0.00 0.00 3.06
2206 4047 1.338973 GAACGGCGGGAGTATGTGATA 59.661 52.381 13.24 0.00 0.00 2.15
2207 4048 1.629043 ACGGCGGGAGTATGTGATAT 58.371 50.000 13.24 0.00 0.00 1.63
2208 4049 2.799017 ACGGCGGGAGTATGTGATATA 58.201 47.619 13.24 0.00 0.00 0.86
2209 4050 2.490903 ACGGCGGGAGTATGTGATATAC 59.509 50.000 13.24 0.00 0.00 1.47
2210 4051 2.753452 CGGCGGGAGTATGTGATATACT 59.247 50.000 1.24 1.24 37.53 2.12
2211 4052 3.943381 CGGCGGGAGTATGTGATATACTA 59.057 47.826 1.67 0.00 35.20 1.82
2212 4053 4.035324 CGGCGGGAGTATGTGATATACTAG 59.965 50.000 1.67 0.00 35.20 2.57
2213 4054 4.338682 GGCGGGAGTATGTGATATACTAGG 59.661 50.000 1.67 0.00 35.20 3.02
2214 4055 5.191426 GCGGGAGTATGTGATATACTAGGA 58.809 45.833 1.67 0.00 35.20 2.94
2215 4056 5.828859 GCGGGAGTATGTGATATACTAGGAT 59.171 44.000 1.67 0.00 35.20 3.24
2216 4057 6.238786 GCGGGAGTATGTGATATACTAGGATG 60.239 46.154 1.67 0.00 35.20 3.51
2217 4058 7.054751 CGGGAGTATGTGATATACTAGGATGA 58.945 42.308 1.67 0.00 35.20 2.92
2231 4072 6.678568 ACTAGGATGAAATGGATGGAGTAG 57.321 41.667 0.00 0.00 0.00 2.57
2265 4106 2.224670 CGAGGTACAGATAGCCTCCTCT 60.225 54.545 0.00 0.00 44.32 3.69
2271 4112 1.118838 AGATAGCCTCCTCTGTGCAC 58.881 55.000 10.75 10.75 0.00 4.57
2272 4113 0.249238 GATAGCCTCCTCTGTGCACG 60.249 60.000 13.13 7.36 0.00 5.34
2273 4114 2.303549 ATAGCCTCCTCTGTGCACGC 62.304 60.000 13.13 7.46 0.00 5.34
2274 4115 4.687215 GCCTCCTCTGTGCACGCA 62.687 66.667 13.13 0.00 0.00 5.24
2275 4116 2.031012 CCTCCTCTGTGCACGCAA 59.969 61.111 13.13 0.00 0.00 4.85
2276 4117 1.376424 CCTCCTCTGTGCACGCAAT 60.376 57.895 13.13 0.00 0.00 3.56
2277 4118 0.108186 CCTCCTCTGTGCACGCAATA 60.108 55.000 13.13 0.00 0.00 1.90
2278 4119 1.675714 CCTCCTCTGTGCACGCAATAA 60.676 52.381 13.13 0.00 0.00 1.40
2279 4120 1.394917 CTCCTCTGTGCACGCAATAAC 59.605 52.381 13.13 0.00 0.00 1.89
2280 4121 1.001974 TCCTCTGTGCACGCAATAACT 59.998 47.619 13.13 0.00 0.00 2.24
2281 4122 1.129251 CCTCTGTGCACGCAATAACTG 59.871 52.381 13.13 0.00 0.00 3.16
2306 4147 0.908198 CAGGGAGAAGCTAAGCAGGT 59.092 55.000 0.00 0.00 0.00 4.00
2308 4149 2.112190 AGGGAGAAGCTAAGCAGGTAC 58.888 52.381 0.00 0.00 0.00 3.34
2354 4195 2.615447 CCTTGTCATCCATCATCCAACG 59.385 50.000 0.00 0.00 0.00 4.10
2357 4198 1.331756 GTCATCCATCATCCAACGCAC 59.668 52.381 0.00 0.00 0.00 5.34
2498 4339 2.050144 AGCAGAGAACCAGAGACCAAA 58.950 47.619 0.00 0.00 0.00 3.28
2517 4358 1.446272 GTAGACCGTGAGCAGTGCC 60.446 63.158 12.58 3.92 0.00 5.01
2520 4361 4.664677 ACCGTGAGCAGTGCCGAC 62.665 66.667 12.58 7.79 0.00 4.79
2523 4364 3.418068 GTGAGCAGTGCCGACAGC 61.418 66.667 12.58 2.22 44.14 4.40
2527 4368 2.048222 GCAGTGCCGACAGCTACA 60.048 61.111 2.85 0.00 44.23 2.74
2547 4388 2.280592 GGCGGTCACTCGGTTGTT 60.281 61.111 0.00 0.00 0.00 2.83
2549 4390 1.885850 GCGGTCACTCGGTTGTTGT 60.886 57.895 0.00 0.00 0.00 3.32
2552 4393 1.647084 GTCACTCGGTTGTTGTGGC 59.353 57.895 0.00 0.00 33.04 5.01
2682 4523 1.212751 CTCGATGTCTGCCGTCACA 59.787 57.895 0.00 0.00 0.00 3.58
2789 4630 0.179097 TCAGCCACGCGCACAATATA 60.179 50.000 5.73 0.00 41.38 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.336056 GGCACGAGACGATTATCTCCC 60.336 57.143 0.00 0.00 41.92 4.30
2 3 1.337071 TGGCACGAGACGATTATCTCC 59.663 52.381 0.00 0.00 41.92 3.71
4 5 3.448686 CTTTGGCACGAGACGATTATCT 58.551 45.455 0.00 0.00 0.00 1.98
5 6 2.540101 CCTTTGGCACGAGACGATTATC 59.460 50.000 0.00 0.00 0.00 1.75
7 8 1.546923 TCCTTTGGCACGAGACGATTA 59.453 47.619 0.00 0.00 0.00 1.75
8 9 0.320374 TCCTTTGGCACGAGACGATT 59.680 50.000 0.00 0.00 0.00 3.34
9 10 0.537188 ATCCTTTGGCACGAGACGAT 59.463 50.000 0.00 0.00 0.00 3.73
10 11 0.389817 CATCCTTTGGCACGAGACGA 60.390 55.000 0.00 0.00 0.00 4.20
11 12 0.389817 TCATCCTTTGGCACGAGACG 60.390 55.000 0.00 0.00 0.00 4.18
12 13 1.808411 TTCATCCTTTGGCACGAGAC 58.192 50.000 0.00 0.00 0.00 3.36
13 14 2.237143 AGATTCATCCTTTGGCACGAGA 59.763 45.455 0.00 0.00 0.00 4.04
14 15 2.611292 GAGATTCATCCTTTGGCACGAG 59.389 50.000 0.00 0.00 0.00 4.18
15 16 2.632377 GAGATTCATCCTTTGGCACGA 58.368 47.619 0.00 0.00 0.00 4.35
16 17 1.672881 GGAGATTCATCCTTTGGCACG 59.327 52.381 0.00 0.00 36.35 5.34
17 18 1.672881 CGGAGATTCATCCTTTGGCAC 59.327 52.381 0.00 0.00 37.20 5.01
18 19 1.559219 TCGGAGATTCATCCTTTGGCA 59.441 47.619 0.00 0.00 37.20 4.92
19 20 2.332063 TCGGAGATTCATCCTTTGGC 57.668 50.000 0.00 0.00 37.20 4.52
20 21 3.118261 TCCTTCGGAGATTCATCCTTTGG 60.118 47.826 0.00 0.00 37.20 3.28
21 22 4.142609 TCCTTCGGAGATTCATCCTTTG 57.857 45.455 0.00 0.00 37.20 2.77
22 23 4.226168 AGTTCCTTCGGAGATTCATCCTTT 59.774 41.667 0.00 0.00 37.20 3.11
23 24 3.777522 AGTTCCTTCGGAGATTCATCCTT 59.222 43.478 0.00 0.00 37.20 3.36
24 25 3.379452 AGTTCCTTCGGAGATTCATCCT 58.621 45.455 0.00 0.00 37.20 3.24
25 26 3.828875 AGTTCCTTCGGAGATTCATCC 57.171 47.619 0.00 0.00 35.04 3.51
26 27 5.232414 CGTTAAGTTCCTTCGGAGATTCATC 59.768 44.000 0.00 0.00 35.04 2.92
27 28 5.109903 CGTTAAGTTCCTTCGGAGATTCAT 58.890 41.667 0.00 0.00 35.04 2.57
28 29 4.491676 CGTTAAGTTCCTTCGGAGATTCA 58.508 43.478 0.00 0.00 35.04 2.57
29 30 3.306434 GCGTTAAGTTCCTTCGGAGATTC 59.694 47.826 0.00 0.00 35.04 2.52
30 31 3.259902 GCGTTAAGTTCCTTCGGAGATT 58.740 45.455 0.00 0.00 35.04 2.40
31 32 2.232941 TGCGTTAAGTTCCTTCGGAGAT 59.767 45.455 0.00 0.00 35.04 2.75
32 33 1.614903 TGCGTTAAGTTCCTTCGGAGA 59.385 47.619 0.00 0.00 31.21 3.71
33 34 1.725164 GTGCGTTAAGTTCCTTCGGAG 59.275 52.381 0.00 0.00 31.21 4.63
34 35 1.787012 GTGCGTTAAGTTCCTTCGGA 58.213 50.000 0.00 0.00 0.00 4.55
35 36 0.437295 CGTGCGTTAAGTTCCTTCGG 59.563 55.000 0.00 0.00 0.00 4.30
36 37 0.179258 GCGTGCGTTAAGTTCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
37 38 0.179258 CGCGTGCGTTAAGTTCCTTC 60.179 55.000 6.00 0.00 34.35 3.46
38 39 0.598158 TCGCGTGCGTTAAGTTCCTT 60.598 50.000 14.47 0.00 40.74 3.36
39 40 0.389426 ATCGCGTGCGTTAAGTTCCT 60.389 50.000 14.47 0.00 40.74 3.36
40 41 0.441145 AATCGCGTGCGTTAAGTTCC 59.559 50.000 14.47 0.00 40.74 3.62
41 42 2.343544 ACTAATCGCGTGCGTTAAGTTC 59.656 45.455 14.47 0.00 40.74 3.01
42 43 2.331194 ACTAATCGCGTGCGTTAAGTT 58.669 42.857 14.47 5.68 40.74 2.66
43 44 1.916000 GACTAATCGCGTGCGTTAAGT 59.084 47.619 14.47 14.41 40.74 2.24
44 45 1.254570 GGACTAATCGCGTGCGTTAAG 59.745 52.381 14.47 11.55 40.74 1.85
45 46 1.270971 GGACTAATCGCGTGCGTTAA 58.729 50.000 14.47 0.00 40.74 2.01
46 47 0.862701 CGGACTAATCGCGTGCGTTA 60.863 55.000 14.47 10.71 40.60 3.18
47 48 2.156446 CGGACTAATCGCGTGCGTT 61.156 57.895 14.47 10.15 40.60 4.84
48 49 2.578713 CGGACTAATCGCGTGCGT 60.579 61.111 14.47 0.00 40.60 5.24
49 50 3.972803 GCGGACTAATCGCGTGCG 61.973 66.667 5.77 8.14 46.78 5.34
55 56 1.290203 ATGCTTGTGCGGACTAATCG 58.710 50.000 8.99 0.00 43.34 3.34
56 57 2.420022 ACAATGCTTGTGCGGACTAATC 59.580 45.455 8.99 0.00 43.48 1.75
57 58 2.420022 GACAATGCTTGTGCGGACTAAT 59.580 45.455 8.99 0.00 45.52 1.73
58 59 1.804151 GACAATGCTTGTGCGGACTAA 59.196 47.619 8.99 0.18 45.52 2.24
59 60 1.270571 TGACAATGCTTGTGCGGACTA 60.271 47.619 8.99 0.00 45.52 2.59
60 61 0.534877 TGACAATGCTTGTGCGGACT 60.535 50.000 8.99 0.00 45.52 3.85
61 62 0.523072 ATGACAATGCTTGTGCGGAC 59.477 50.000 0.00 0.00 45.52 4.79
62 63 0.804364 GATGACAATGCTTGTGCGGA 59.196 50.000 6.31 0.00 45.52 5.54
63 64 0.522626 TGATGACAATGCTTGTGCGG 59.477 50.000 6.31 0.00 45.52 5.69
64 65 2.334971 TTGATGACAATGCTTGTGCG 57.665 45.000 6.31 0.00 45.52 5.34
65 66 3.611113 GTGATTGATGACAATGCTTGTGC 59.389 43.478 6.31 0.00 45.52 4.57
66 67 4.171005 GGTGATTGATGACAATGCTTGTG 58.829 43.478 6.31 0.00 45.52 3.33
68 69 4.443913 TGGTGATTGATGACAATGCTTG 57.556 40.909 0.00 0.00 45.30 4.01
69 70 5.471556 TTTGGTGATTGATGACAATGCTT 57.528 34.783 0.00 0.00 45.30 3.91
70 71 5.221481 TGTTTTGGTGATTGATGACAATGCT 60.221 36.000 0.00 0.00 45.30 3.79
71 72 4.989797 TGTTTTGGTGATTGATGACAATGC 59.010 37.500 0.00 0.00 45.30 3.56
72 73 7.094631 AGATGTTTTGGTGATTGATGACAATG 58.905 34.615 0.00 0.00 45.30 2.82
74 75 6.653526 AGATGTTTTGGTGATTGATGACAA 57.346 33.333 0.00 0.00 40.42 3.18
75 76 6.448852 CAAGATGTTTTGGTGATTGATGACA 58.551 36.000 0.00 0.00 0.00 3.58
76 77 5.865552 CCAAGATGTTTTGGTGATTGATGAC 59.134 40.000 0.00 0.00 42.16 3.06
77 78 5.047164 CCCAAGATGTTTTGGTGATTGATGA 60.047 40.000 4.29 0.00 44.98 2.92
78 79 5.172934 CCCAAGATGTTTTGGTGATTGATG 58.827 41.667 4.29 0.00 44.98 3.07
79 80 4.223477 CCCCAAGATGTTTTGGTGATTGAT 59.777 41.667 4.29 0.00 44.98 2.57
80 81 3.577848 CCCCAAGATGTTTTGGTGATTGA 59.422 43.478 4.29 0.00 44.98 2.57
81 82 3.577848 TCCCCAAGATGTTTTGGTGATTG 59.422 43.478 4.29 0.00 44.98 2.67
82 83 3.855668 TCCCCAAGATGTTTTGGTGATT 58.144 40.909 4.29 0.00 44.98 2.57
83 84 3.541242 TCCCCAAGATGTTTTGGTGAT 57.459 42.857 4.29 0.00 44.98 3.06
84 85 3.541242 ATCCCCAAGATGTTTTGGTGA 57.459 42.857 4.29 0.00 44.98 4.02
85 86 5.736951 TTTATCCCCAAGATGTTTTGGTG 57.263 39.130 4.29 0.00 44.98 4.17
86 87 7.418942 GCATATTTATCCCCAAGATGTTTTGGT 60.419 37.037 4.29 0.00 44.98 3.67
87 88 6.930722 GCATATTTATCCCCAAGATGTTTTGG 59.069 38.462 0.00 0.00 45.83 3.28
88 89 6.930722 GGCATATTTATCCCCAAGATGTTTTG 59.069 38.462 0.00 0.00 36.33 2.44
89 90 6.043127 GGGCATATTTATCCCCAAGATGTTTT 59.957 38.462 0.00 0.00 37.46 2.43
90 91 5.543790 GGGCATATTTATCCCCAAGATGTTT 59.456 40.000 0.00 0.00 37.46 2.83
91 92 5.086621 GGGCATATTTATCCCCAAGATGTT 58.913 41.667 0.00 0.00 37.46 2.71
92 93 4.358006 AGGGCATATTTATCCCCAAGATGT 59.642 41.667 0.00 0.00 40.97 3.06
93 94 4.939255 AGGGCATATTTATCCCCAAGATG 58.061 43.478 0.00 0.00 40.97 2.90
94 95 5.621904 AAGGGCATATTTATCCCCAAGAT 57.378 39.130 0.00 0.00 40.97 2.40
95 96 5.374154 TGTAAGGGCATATTTATCCCCAAGA 59.626 40.000 0.00 0.00 40.97 3.02
96 97 5.640147 TGTAAGGGCATATTTATCCCCAAG 58.360 41.667 0.00 0.00 40.97 3.61
97 98 5.374154 TCTGTAAGGGCATATTTATCCCCAA 59.626 40.000 0.00 0.00 40.97 4.12
98 99 4.917040 TCTGTAAGGGCATATTTATCCCCA 59.083 41.667 0.00 0.00 40.97 4.96
99 100 5.254115 GTCTGTAAGGGCATATTTATCCCC 58.746 45.833 0.00 0.00 40.97 4.81
100 101 4.935808 CGTCTGTAAGGGCATATTTATCCC 59.064 45.833 0.00 0.00 40.36 3.85
101 102 5.548406 ACGTCTGTAAGGGCATATTTATCC 58.452 41.667 0.00 0.00 0.00 2.59
102 103 8.597662 TTAACGTCTGTAAGGGCATATTTATC 57.402 34.615 0.00 0.00 0.00 1.75
103 104 9.216117 GATTAACGTCTGTAAGGGCATATTTAT 57.784 33.333 0.00 0.00 0.00 1.40
104 105 7.383029 CGATTAACGTCTGTAAGGGCATATTTA 59.617 37.037 0.00 0.00 37.22 1.40
105 106 6.202188 CGATTAACGTCTGTAAGGGCATATTT 59.798 38.462 0.00 0.00 37.22 1.40
106 107 5.694910 CGATTAACGTCTGTAAGGGCATATT 59.305 40.000 0.00 0.00 37.22 1.28
107 108 5.227908 CGATTAACGTCTGTAAGGGCATAT 58.772 41.667 0.00 0.00 37.22 1.78
108 109 4.613944 CGATTAACGTCTGTAAGGGCATA 58.386 43.478 0.00 0.00 37.22 3.14
109 110 3.454375 CGATTAACGTCTGTAAGGGCAT 58.546 45.455 0.00 0.00 37.22 4.40
110 111 2.883574 CGATTAACGTCTGTAAGGGCA 58.116 47.619 0.00 0.00 37.22 5.36
111 112 1.591619 GCGATTAACGTCTGTAAGGGC 59.408 52.381 0.00 0.00 44.60 5.19
112 113 2.199236 GGCGATTAACGTCTGTAAGGG 58.801 52.381 0.00 0.00 43.76 3.95
140 141 2.591715 GTGGCAGTGGCAACGAGT 60.592 61.111 22.39 0.00 43.71 4.18
154 155 0.031857 TTCGCAAATGCCTTGTGTGG 59.968 50.000 0.00 0.00 44.45 4.17
161 162 1.282570 CGTGTGTTCGCAAATGCCT 59.717 52.632 0.00 0.00 37.91 4.75
177 178 2.099405 CCACTAAAAATGCCATCCCGT 58.901 47.619 0.00 0.00 0.00 5.28
178 179 2.099405 ACCACTAAAAATGCCATCCCG 58.901 47.619 0.00 0.00 0.00 5.14
182 183 5.055812 CACACAAACCACTAAAAATGCCAT 58.944 37.500 0.00 0.00 0.00 4.40
192 193 2.291024 ACCACAACCACACAAACCACTA 60.291 45.455 0.00 0.00 0.00 2.74
193 194 1.181786 CCACAACCACACAAACCACT 58.818 50.000 0.00 0.00 0.00 4.00
194 195 0.892063 ACCACAACCACACAAACCAC 59.108 50.000 0.00 0.00 0.00 4.16
195 196 1.633774 AACCACAACCACACAAACCA 58.366 45.000 0.00 0.00 0.00 3.67
196 197 2.753055 AAACCACAACCACACAAACC 57.247 45.000 0.00 0.00 0.00 3.27
197 198 3.654414 TGAAAACCACAACCACACAAAC 58.346 40.909 0.00 0.00 0.00 2.93
202 203 4.815269 CTTTTCTGAAAACCACAACCACA 58.185 39.130 11.33 0.00 0.00 4.17
208 209 3.740764 GCCATGCTTTTCTGAAAACCACA 60.741 43.478 11.33 10.28 0.00 4.17
210 211 2.433604 TGCCATGCTTTTCTGAAAACCA 59.566 40.909 11.33 11.67 0.00 3.67
211 212 3.110447 TGCCATGCTTTTCTGAAAACC 57.890 42.857 11.33 6.38 0.00 3.27
240 241 5.401033 TTGACGAAAATTGCACCAAAATG 57.599 34.783 0.00 0.00 0.00 2.32
241 242 7.307692 GGTTATTGACGAAAATTGCACCAAAAT 60.308 33.333 0.00 0.00 0.00 1.82
255 260 5.563867 GCAAAAGATGGTGGTTATTGACGAA 60.564 40.000 0.00 0.00 0.00 3.85
256 261 4.083003 GCAAAAGATGGTGGTTATTGACGA 60.083 41.667 0.00 0.00 0.00 4.20
260 265 6.275335 CCTATGCAAAAGATGGTGGTTATTG 58.725 40.000 0.00 0.00 0.00 1.90
271 276 4.641989 GTCACATGACCCTATGCAAAAGAT 59.358 41.667 0.00 0.00 39.07 2.40
273 278 4.012374 AGTCACATGACCCTATGCAAAAG 58.988 43.478 8.41 0.00 45.85 2.27
279 284 2.103771 CCCAGAGTCACATGACCCTATG 59.896 54.545 8.41 0.00 45.85 2.23
282 287 0.911525 CCCCAGAGTCACATGACCCT 60.912 60.000 8.41 0.00 45.85 4.34
307 313 1.736645 CTGCGGTAATATCCCGGCG 60.737 63.158 13.77 0.00 45.57 6.46
311 317 1.145803 GTTCGCTGCGGTAATATCCC 58.854 55.000 23.03 0.00 0.00 3.85
314 320 1.202325 TGACGTTCGCTGCGGTAATAT 60.202 47.619 23.03 3.16 0.00 1.28
316 322 1.076533 CTGACGTTCGCTGCGGTAAT 61.077 55.000 23.03 5.84 0.00 1.89
318 324 2.126618 CTGACGTTCGCTGCGGTA 60.127 61.111 23.03 7.97 0.00 4.02
342 348 8.740123 ACACCATGGAATACATAAACGATAAA 57.260 30.769 21.47 0.00 37.84 1.40
347 353 8.067784 GTGATAACACCATGGAATACATAAACG 58.932 37.037 21.47 0.00 40.74 3.60
351 357 5.699001 GCGTGATAACACCATGGAATACATA 59.301 40.000 21.47 2.95 43.34 2.29
381 387 5.688807 TGATTCCAGAAGAAGGGATGATTC 58.311 41.667 0.00 0.00 38.07 2.52
382 388 5.722172 TGATTCCAGAAGAAGGGATGATT 57.278 39.130 0.00 0.00 38.07 2.57
387 393 5.503927 CTTCAATGATTCCAGAAGAAGGGA 58.496 41.667 0.00 0.00 39.78 4.20
396 403 3.129988 GGAACTGCCTTCAATGATTCCAG 59.870 47.826 6.26 5.05 35.30 3.86
407 414 2.048127 AGACGCGGAACTGCCTTC 60.048 61.111 12.47 0.00 0.00 3.46
449 456 1.205460 TTGGCTAGGAGAACCCACCC 61.205 60.000 0.00 0.00 37.41 4.61
541 2259 8.584157 AGTATGTGCAAATAAATGAACCAGAAA 58.416 29.630 0.00 0.00 0.00 2.52
542 2260 8.121305 AGTATGTGCAAATAAATGAACCAGAA 57.879 30.769 0.00 0.00 0.00 3.02
543 2261 7.701539 AGTATGTGCAAATAAATGAACCAGA 57.298 32.000 0.00 0.00 0.00 3.86
690 2421 1.299850 GCGGTTTGTCACCTTTGCC 60.300 57.895 0.00 0.00 44.69 4.52
836 2571 3.543680 ACTGAACGAATATGAGGTGGG 57.456 47.619 0.00 0.00 0.00 4.61
839 2574 4.631813 GCTGAAACTGAACGAATATGAGGT 59.368 41.667 0.00 0.00 0.00 3.85
841 2576 5.809562 AGAGCTGAAACTGAACGAATATGAG 59.190 40.000 0.00 0.00 0.00 2.90
842 2577 5.724328 AGAGCTGAAACTGAACGAATATGA 58.276 37.500 0.00 0.00 0.00 2.15
884 2653 2.648059 GGTGAGATGGGAAAGGTGATG 58.352 52.381 0.00 0.00 0.00 3.07
917 2687 1.366366 GCCACTCGGTGTGTGTACT 59.634 57.895 9.12 0.00 44.81 2.73
918 2688 1.068417 TGCCACTCGGTGTGTGTAC 59.932 57.895 9.12 0.00 44.81 2.90
920 2690 2.203015 GTGCCACTCGGTGTGTGT 60.203 61.111 9.12 0.00 44.81 3.72
927 2697 1.669115 CAAGGTCTGTGCCACTCGG 60.669 63.158 0.00 0.00 0.00 4.63
955 2725 3.753434 CTCGCTGCGGAGAGGTGT 61.753 66.667 23.03 0.00 36.07 4.16
994 2764 2.892425 GACGCGCTTCATCCCCTG 60.892 66.667 5.73 0.00 0.00 4.45
995 2765 4.514577 CGACGCGCTTCATCCCCT 62.515 66.667 14.72 0.00 0.00 4.79
996 2766 4.814294 ACGACGCGCTTCATCCCC 62.814 66.667 14.72 0.00 0.00 4.81
997 2767 3.554692 CACGACGCGCTTCATCCC 61.555 66.667 14.72 0.00 0.00 3.85
1151 2932 9.447157 AGATTAGAAGAAAGGAGAGTGAAATTG 57.553 33.333 0.00 0.00 0.00 2.32
1177 2977 4.225267 GGGAGGACACTCAAGAAAGGATTA 59.775 45.833 0.00 0.00 45.81 1.75
1178 2978 3.009584 GGGAGGACACTCAAGAAAGGATT 59.990 47.826 0.00 0.00 45.81 3.01
1179 2979 2.573915 GGGAGGACACTCAAGAAAGGAT 59.426 50.000 0.00 0.00 45.81 3.24
1182 2982 3.778954 AAGGGAGGACACTCAAGAAAG 57.221 47.619 0.00 0.00 45.81 2.62
1183 2983 4.207165 CAAAAGGGAGGACACTCAAGAAA 58.793 43.478 0.00 0.00 45.81 2.52
1184 2984 3.202151 ACAAAAGGGAGGACACTCAAGAA 59.798 43.478 0.00 0.00 45.81 2.52
1185 2985 2.777692 ACAAAAGGGAGGACACTCAAGA 59.222 45.455 0.00 0.00 45.81 3.02
1186 2986 2.880890 CACAAAAGGGAGGACACTCAAG 59.119 50.000 0.00 0.00 45.81 3.02
1187 2987 2.930950 CACAAAAGGGAGGACACTCAA 58.069 47.619 0.00 0.00 45.81 3.02
1188 2988 1.476833 GCACAAAAGGGAGGACACTCA 60.477 52.381 0.00 0.00 45.81 3.41
1208 3008 4.445052 TGCTCATGAATTTGCAAGAAAACG 59.555 37.500 4.98 0.00 32.12 3.60
1228 3028 3.944055 ACTTGTTACTCGAGTGATGCT 57.056 42.857 28.12 1.88 39.15 3.79
1249 3049 1.202110 CGATGACATCAACTTGCTGCC 60.202 52.381 15.58 0.00 0.00 4.85
1273 3076 3.005261 AGACTCTATGCGCAGTTCATAGG 59.995 47.826 18.32 8.75 42.11 2.57
1285 3088 8.178313 GTGGTCAAGAAATTTAAGACTCTATGC 58.822 37.037 13.52 0.00 0.00 3.14
1290 3093 7.971183 AGAGTGGTCAAGAAATTTAAGACTC 57.029 36.000 13.52 0.00 0.00 3.36
1321 3124 2.046507 GGGTGTCAGGCAGCTGAG 60.047 66.667 20.43 6.39 44.46 3.35
1371 3174 4.122776 CGCTGTATTCAGGTAGCTGAAAT 58.877 43.478 33.94 24.71 45.07 2.17
1385 3188 0.036164 TGCAGGACCAACGCTGTATT 59.964 50.000 0.00 0.00 0.00 1.89
1397 3200 1.517242 CTCCACAGAAACTGCAGGAC 58.483 55.000 19.93 8.74 35.21 3.85
1398 3201 0.250467 GCTCCACAGAAACTGCAGGA 60.250 55.000 19.93 2.49 36.89 3.86
1434 3237 3.795688 TCCTCAAAGCAAAGATGTCCT 57.204 42.857 0.00 0.00 0.00 3.85
1459 3262 1.677217 GGCTCAGCGTGAAGATCCTTT 60.677 52.381 0.00 0.00 0.00 3.11
1472 3275 0.037232 AGTACAAGTTCCGGCTCAGC 60.037 55.000 0.00 0.00 0.00 4.26
1474 3277 0.320421 GCAGTACAAGTTCCGGCTCA 60.320 55.000 0.00 0.00 0.00 4.26
1476 3279 0.037232 GAGCAGTACAAGTTCCGGCT 60.037 55.000 0.00 0.00 0.00 5.52
1477 3280 1.019805 GGAGCAGTACAAGTTCCGGC 61.020 60.000 0.00 0.00 0.00 6.13
1499 3302 3.379865 TTACCCAGTCGCCGATGGC 62.380 63.158 9.25 0.00 46.75 4.40
1500 3303 1.227263 CTTACCCAGTCGCCGATGG 60.227 63.158 8.13 8.13 36.27 3.51
1501 3304 0.527817 GACTTACCCAGTCGCCGATG 60.528 60.000 0.00 0.00 42.82 3.84
1531 3335 2.095919 GTCAAGGAAACGATTTCACCCG 60.096 50.000 10.99 0.00 41.43 5.28
1543 3347 0.391597 AACGGCTCGAGTCAAGGAAA 59.608 50.000 18.62 0.00 0.00 3.13
1546 3350 0.038159 AAGAACGGCTCGAGTCAAGG 60.038 55.000 18.62 3.12 0.00 3.61
1547 3351 1.063806 CAAGAACGGCTCGAGTCAAG 58.936 55.000 18.62 3.92 0.00 3.02
1552 3356 0.737715 CCTTCCAAGAACGGCTCGAG 60.738 60.000 8.45 8.45 0.00 4.04
1559 3363 2.749621 CCCAAGATTCCTTCCAAGAACG 59.250 50.000 0.00 0.00 0.00 3.95
1563 3367 2.521547 AGCCCAAGATTCCTTCCAAG 57.478 50.000 0.00 0.00 0.00 3.61
1566 3370 2.127708 TCCTAGCCCAAGATTCCTTCC 58.872 52.381 0.00 0.00 0.00 3.46
1567 3371 3.933861 TTCCTAGCCCAAGATTCCTTC 57.066 47.619 0.00 0.00 0.00 3.46
1568 3372 3.852578 TCTTTCCTAGCCCAAGATTCCTT 59.147 43.478 0.00 0.00 0.00 3.36
1569 3373 3.464828 TCTTTCCTAGCCCAAGATTCCT 58.535 45.455 0.00 0.00 0.00 3.36
1587 3391 1.482593 GTGATCACTCGGGTGGATCTT 59.517 52.381 17.03 0.00 43.17 2.40
1593 3397 1.514228 CGACGTGATCACTCGGGTG 60.514 63.158 26.47 9.85 44.23 4.61
1595 3399 0.100682 AATCGACGTGATCACTCGGG 59.899 55.000 30.00 17.66 35.84 5.14
1598 3402 0.567968 CGCAATCGACGTGATCACTC 59.432 55.000 22.95 17.03 35.84 3.51
1599 3403 0.170339 TCGCAATCGACGTGATCACT 59.830 50.000 22.95 10.54 40.21 3.41
1600 3404 0.989164 TTCGCAATCGACGTGATCAC 59.011 50.000 16.21 16.21 45.43 3.06
1601 3405 1.587946 CATTCGCAATCGACGTGATCA 59.412 47.619 0.00 0.00 45.43 2.92
1613 3417 2.254951 CCTGCAACGCATTCGCAA 59.745 55.556 0.00 0.00 38.13 4.85
1614 3418 2.965147 GACCTGCAACGCATTCGCA 61.965 57.895 0.00 0.00 38.13 5.10
1635 3439 0.848942 CCGAGAACATGAGAATCGCG 59.151 55.000 0.00 0.00 38.61 5.87
1671 3475 3.447229 TCATGAAGAAGATGGTCACGCTA 59.553 43.478 0.00 0.00 0.00 4.26
1691 3495 1.865865 GCAGAACTTCACGTCCTTCA 58.134 50.000 0.00 0.00 0.00 3.02
1698 3502 2.720758 CTCGGCGCAGAACTTCACG 61.721 63.158 12.27 0.70 0.00 4.35
1778 3582 1.512734 GAAGACGCGGCTTGCAATG 60.513 57.895 35.74 0.00 46.97 2.82
1779 3583 1.237285 AAGAAGACGCGGCTTGCAAT 61.237 50.000 35.74 7.63 46.97 3.56
1780 3584 1.444119 AAAGAAGACGCGGCTTGCAA 61.444 50.000 35.74 0.00 46.97 4.08
1816 3620 5.394773 GGTGATTCTAGAAGAAGGAGACCAC 60.395 48.000 11.53 7.10 37.69 4.16
1818 3622 4.202070 CGGTGATTCTAGAAGAAGGAGACC 60.202 50.000 11.53 7.53 37.69 3.85
1844 3676 0.391597 AGTGACAATTGGGACGACGT 59.608 50.000 10.83 0.00 0.00 4.34
1851 3683 1.340405 CCCTCCTGAGTGACAATTGGG 60.340 57.143 10.83 0.00 0.00 4.12
1853 3685 2.867109 ACCCTCCTGAGTGACAATTG 57.133 50.000 3.24 3.24 0.00 2.32
1857 3689 3.515502 CTGATTTACCCTCCTGAGTGACA 59.484 47.826 0.00 0.00 0.00 3.58
1862 3694 3.274288 GCAACTGATTTACCCTCCTGAG 58.726 50.000 0.00 0.00 0.00 3.35
1870 3702 2.420022 AGCACATCGCAACTGATTTACC 59.580 45.455 0.00 0.00 46.13 2.85
1871 3703 3.372206 AGAGCACATCGCAACTGATTTAC 59.628 43.478 0.00 0.00 46.13 2.01
1872 3704 3.371898 CAGAGCACATCGCAACTGATTTA 59.628 43.478 0.00 0.00 44.51 1.40
1884 3716 1.802960 CAAGTGTGTCCAGAGCACATC 59.197 52.381 1.42 0.00 46.66 3.06
1885 3717 1.141657 ACAAGTGTGTCCAGAGCACAT 59.858 47.619 1.42 0.00 46.66 3.21
1886 3718 0.541392 ACAAGTGTGTCCAGAGCACA 59.459 50.000 0.00 0.00 43.60 4.57
1893 3725 5.189928 ACTGAAACATAACAAGTGTGTCCA 58.810 37.500 0.00 0.00 36.80 4.02
1900 3732 7.148474 CGTGGCTATAACTGAAACATAACAAGT 60.148 37.037 0.00 0.00 0.00 3.16
1908 3740 3.046968 TGCGTGGCTATAACTGAAACA 57.953 42.857 0.00 0.00 0.00 2.83
1909 3741 4.809426 AGTATGCGTGGCTATAACTGAAAC 59.191 41.667 0.00 0.00 0.00 2.78
1920 3752 0.673644 GTGGTGAAGTATGCGTGGCT 60.674 55.000 0.00 0.00 0.00 4.75
1922 3754 0.036388 AGGTGGTGAAGTATGCGTGG 60.036 55.000 0.00 0.00 0.00 4.94
1924 3756 0.685097 ACAGGTGGTGAAGTATGCGT 59.315 50.000 0.00 0.00 0.00 5.24
1929 3761 7.327975 CAATCTATGTAACAGGTGGTGAAGTA 58.672 38.462 0.00 0.00 0.00 2.24
1930 3762 6.173339 CAATCTATGTAACAGGTGGTGAAGT 58.827 40.000 0.00 0.00 0.00 3.01
1943 3782 9.658799 GAGCTATCAAATAGGCAATCTATGTAA 57.341 33.333 0.00 0.00 38.60 2.41
1955 3794 7.637229 CACACAAAGATGAGCTATCAAATAGG 58.363 38.462 0.00 0.00 39.39 2.57
1958 3797 5.163581 GGCACACAAAGATGAGCTATCAAAT 60.164 40.000 0.00 0.00 39.39 2.32
1978 3819 3.730715 CAGAATTCACAAAGAAACGGCAC 59.269 43.478 8.44 0.00 40.22 5.01
1980 3821 3.004315 TCCAGAATTCACAAAGAAACGGC 59.996 43.478 8.44 0.00 40.22 5.68
1981 3822 4.275936 ACTCCAGAATTCACAAAGAAACGG 59.724 41.667 8.44 0.00 40.22 4.44
1982 3823 5.207768 CACTCCAGAATTCACAAAGAAACG 58.792 41.667 8.44 0.00 40.22 3.60
1984 3825 6.773976 AACACTCCAGAATTCACAAAGAAA 57.226 33.333 8.44 0.00 40.22 2.52
1985 3826 7.873719 TTAACACTCCAGAATTCACAAAGAA 57.126 32.000 8.44 0.00 41.28 2.52
1986 3827 7.873719 TTTAACACTCCAGAATTCACAAAGA 57.126 32.000 8.44 0.00 0.00 2.52
1987 3828 7.973388 TGTTTTAACACTCCAGAATTCACAAAG 59.027 33.333 8.44 2.24 33.17 2.77
1989 3830 7.397892 TGTTTTAACACTCCAGAATTCACAA 57.602 32.000 8.44 0.00 33.17 3.33
1993 3834 9.788960 GGAATATGTTTTAACACTCCAGAATTC 57.211 33.333 0.00 0.00 42.51 2.17
1994 3835 8.749354 GGGAATATGTTTTAACACTCCAGAATT 58.251 33.333 16.11 0.00 42.51 2.17
1996 3837 7.466804 AGGGAATATGTTTTAACACTCCAGAA 58.533 34.615 16.11 0.00 42.51 3.02
1997 3838 7.027874 AGGGAATATGTTTTAACACTCCAGA 57.972 36.000 16.11 0.00 42.51 3.86
1998 3839 7.611855 AGAAGGGAATATGTTTTAACACTCCAG 59.388 37.037 16.11 0.00 42.51 3.86
1999 3840 7.466804 AGAAGGGAATATGTTTTAACACTCCA 58.533 34.615 16.11 0.00 42.51 3.86
2000 3841 7.829706 AGAGAAGGGAATATGTTTTAACACTCC 59.170 37.037 0.00 4.91 42.51 3.85
2001 3842 8.669243 CAGAGAAGGGAATATGTTTTAACACTC 58.331 37.037 0.00 0.00 42.51 3.51
2002 3843 8.164070 ACAGAGAAGGGAATATGTTTTAACACT 58.836 33.333 0.00 0.00 42.51 3.55
2003 3844 8.336801 ACAGAGAAGGGAATATGTTTTAACAC 57.663 34.615 0.00 0.00 42.51 3.32
2004 3845 8.934023 AACAGAGAAGGGAATATGTTTTAACA 57.066 30.769 0.00 0.00 44.06 2.41
2007 3848 9.158233 CGTTAACAGAGAAGGGAATATGTTTTA 57.842 33.333 6.39 0.00 33.31 1.52
2008 3849 7.120726 CCGTTAACAGAGAAGGGAATATGTTTT 59.879 37.037 6.39 0.00 34.42 2.43
2009 3850 6.598064 CCGTTAACAGAGAAGGGAATATGTTT 59.402 38.462 6.39 0.00 34.42 2.83
2010 3851 6.070424 TCCGTTAACAGAGAAGGGAATATGTT 60.070 38.462 6.39 0.00 37.78 2.71
2011 3852 5.424252 TCCGTTAACAGAGAAGGGAATATGT 59.576 40.000 6.39 0.00 37.78 2.29
2012 3853 5.914033 TCCGTTAACAGAGAAGGGAATATG 58.086 41.667 6.39 0.00 37.78 1.78
2014 3855 5.246656 TGTTCCGTTAACAGAGAAGGGAATA 59.753 40.000 6.39 7.31 46.72 1.75
2016 3857 3.388676 TGTTCCGTTAACAGAGAAGGGAA 59.611 43.478 6.39 5.68 43.22 3.97
2032 3873 9.413048 GAGAGAGTATATAGGAATTTTGTTCCG 57.587 37.037 1.49 0.00 43.23 4.30
2088 3929 9.725019 TGTAGATTCACTCATTCACTTATTGTT 57.275 29.630 0.00 0.00 0.00 2.83
2089 3930 9.155975 GTGTAGATTCACTCATTCACTTATTGT 57.844 33.333 0.00 0.00 35.68 2.71
2090 3931 9.376075 AGTGTAGATTCACTCATTCACTTATTG 57.624 33.333 0.00 0.00 44.07 1.90
2120 3961 9.639601 CACATACGGATGTACATAGACATATTT 57.360 33.333 14.23 0.00 44.82 1.40
2121 3962 8.251026 CCACATACGGATGTACATAGACATATT 58.749 37.037 14.23 0.00 44.82 1.28
2122 3963 7.396339 ACCACATACGGATGTACATAGACATAT 59.604 37.037 14.23 0.00 44.82 1.78
2123 3964 6.717997 ACCACATACGGATGTACATAGACATA 59.282 38.462 14.23 0.00 44.82 2.29
2124 3965 5.538813 ACCACATACGGATGTACATAGACAT 59.461 40.000 14.23 3.26 44.82 3.06
2125 3966 4.891168 ACCACATACGGATGTACATAGACA 59.109 41.667 14.23 1.12 44.82 3.41
2126 3967 5.449107 ACCACATACGGATGTACATAGAC 57.551 43.478 14.23 1.53 44.82 2.59
2127 3968 6.301486 ACTACCACATACGGATGTACATAGA 58.699 40.000 22.62 5.04 44.82 1.98
2128 3969 6.349115 GGACTACCACATACGGATGTACATAG 60.349 46.154 14.23 16.35 44.82 2.23
2129 3970 5.474532 GGACTACCACATACGGATGTACATA 59.525 44.000 14.23 5.36 44.82 2.29
2130 3971 4.280174 GGACTACCACATACGGATGTACAT 59.720 45.833 14.23 8.43 44.82 2.29
2131 3972 3.633525 GGACTACCACATACGGATGTACA 59.366 47.826 14.23 0.00 44.82 2.90
2132 3973 3.633525 TGGACTACCACATACGGATGTAC 59.366 47.826 14.23 1.29 44.82 2.90
2133 3974 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2146 3987 9.449719 TCTTTTAGAGATTTCAAATGGACTACC 57.550 33.333 0.00 0.00 0.00 3.18
2149 3990 8.924511 TGTCTTTTAGAGATTTCAAATGGACT 57.075 30.769 0.00 0.00 36.61 3.85
2150 3991 9.965824 TTTGTCTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 36.61 4.02
2167 4008 8.126700 CGCCGTTCCTAAATATATTTGTCTTTT 58.873 33.333 18.98 0.00 0.00 2.27
2168 4009 7.255001 CCGCCGTTCCTAAATATATTTGTCTTT 60.255 37.037 18.98 0.00 0.00 2.52
2169 4010 6.204108 CCGCCGTTCCTAAATATATTTGTCTT 59.796 38.462 18.98 0.00 0.00 3.01
2170 4011 5.699458 CCGCCGTTCCTAAATATATTTGTCT 59.301 40.000 18.98 0.00 0.00 3.41
2171 4012 5.106830 CCCGCCGTTCCTAAATATATTTGTC 60.107 44.000 18.98 5.72 0.00 3.18
2172 4013 4.758165 CCCGCCGTTCCTAAATATATTTGT 59.242 41.667 18.98 0.00 0.00 2.83
2173 4014 4.998672 TCCCGCCGTTCCTAAATATATTTG 59.001 41.667 18.98 9.85 0.00 2.32
2174 4015 5.221783 ACTCCCGCCGTTCCTAAATATATTT 60.222 40.000 14.86 14.86 0.00 1.40
2175 4016 4.285260 ACTCCCGCCGTTCCTAAATATATT 59.715 41.667 0.00 0.00 0.00 1.28
2176 4017 3.836562 ACTCCCGCCGTTCCTAAATATAT 59.163 43.478 0.00 0.00 0.00 0.86
2177 4018 3.233507 ACTCCCGCCGTTCCTAAATATA 58.766 45.455 0.00 0.00 0.00 0.86
2178 4019 2.044758 ACTCCCGCCGTTCCTAAATAT 58.955 47.619 0.00 0.00 0.00 1.28
2179 4020 1.488390 ACTCCCGCCGTTCCTAAATA 58.512 50.000 0.00 0.00 0.00 1.40
2180 4021 1.488390 TACTCCCGCCGTTCCTAAAT 58.512 50.000 0.00 0.00 0.00 1.40
2181 4022 1.137479 CATACTCCCGCCGTTCCTAAA 59.863 52.381 0.00 0.00 0.00 1.85
2182 4023 0.748450 CATACTCCCGCCGTTCCTAA 59.252 55.000 0.00 0.00 0.00 2.69
2183 4024 0.396139 ACATACTCCCGCCGTTCCTA 60.396 55.000 0.00 0.00 0.00 2.94
2184 4025 1.684734 ACATACTCCCGCCGTTCCT 60.685 57.895 0.00 0.00 0.00 3.36
2185 4026 1.520787 CACATACTCCCGCCGTTCC 60.521 63.158 0.00 0.00 0.00 3.62
2186 4027 0.104304 ATCACATACTCCCGCCGTTC 59.896 55.000 0.00 0.00 0.00 3.95
2187 4028 1.405872 TATCACATACTCCCGCCGTT 58.594 50.000 0.00 0.00 0.00 4.44
2188 4029 1.629043 ATATCACATACTCCCGCCGT 58.371 50.000 0.00 0.00 0.00 5.68
2189 4030 2.753452 AGTATATCACATACTCCCGCCG 59.247 50.000 0.00 0.00 29.47 6.46
2190 4031 4.338682 CCTAGTATATCACATACTCCCGCC 59.661 50.000 0.36 0.00 36.38 6.13
2191 4032 5.191426 TCCTAGTATATCACATACTCCCGC 58.809 45.833 0.36 0.00 36.38 6.13
2192 4033 7.054751 TCATCCTAGTATATCACATACTCCCG 58.945 42.308 0.36 0.00 36.38 5.14
2193 4034 8.824756 TTCATCCTAGTATATCACATACTCCC 57.175 38.462 0.36 0.00 36.38 4.30
2200 4041 8.542926 CCATCCATTTCATCCTAGTATATCACA 58.457 37.037 0.00 0.00 0.00 3.58
2201 4042 8.762645 TCCATCCATTTCATCCTAGTATATCAC 58.237 37.037 0.00 0.00 0.00 3.06
2202 4043 8.915813 TCCATCCATTTCATCCTAGTATATCA 57.084 34.615 0.00 0.00 0.00 2.15
2203 4044 8.986991 ACTCCATCCATTTCATCCTAGTATATC 58.013 37.037 0.00 0.00 0.00 1.63
2204 4045 8.923838 ACTCCATCCATTTCATCCTAGTATAT 57.076 34.615 0.00 0.00 0.00 0.86
2205 4046 9.480861 CTACTCCATCCATTTCATCCTAGTATA 57.519 37.037 0.00 0.00 0.00 1.47
2206 4047 7.958583 ACTACTCCATCCATTTCATCCTAGTAT 59.041 37.037 0.00 0.00 0.00 2.12
2207 4048 7.306013 ACTACTCCATCCATTTCATCCTAGTA 58.694 38.462 0.00 0.00 0.00 1.82
2208 4049 6.146760 ACTACTCCATCCATTTCATCCTAGT 58.853 40.000 0.00 0.00 0.00 2.57
2209 4050 6.678568 ACTACTCCATCCATTTCATCCTAG 57.321 41.667 0.00 0.00 0.00 3.02
2210 4051 8.742125 ATAACTACTCCATCCATTTCATCCTA 57.258 34.615 0.00 0.00 0.00 2.94
2211 4052 5.983333 AACTACTCCATCCATTTCATCCT 57.017 39.130 0.00 0.00 0.00 3.24
2212 4053 7.721399 ACAATAACTACTCCATCCATTTCATCC 59.279 37.037 0.00 0.00 0.00 3.51
2213 4054 8.562892 CACAATAACTACTCCATCCATTTCATC 58.437 37.037 0.00 0.00 0.00 2.92
2214 4055 7.503566 CCACAATAACTACTCCATCCATTTCAT 59.496 37.037 0.00 0.00 0.00 2.57
2215 4056 6.828273 CCACAATAACTACTCCATCCATTTCA 59.172 38.462 0.00 0.00 0.00 2.69
2216 4057 6.238759 GCCACAATAACTACTCCATCCATTTC 60.239 42.308 0.00 0.00 0.00 2.17
2217 4058 5.594317 GCCACAATAACTACTCCATCCATTT 59.406 40.000 0.00 0.00 0.00 2.32
2231 4072 4.110482 CTGTACCTCGTAGCCACAATAAC 58.890 47.826 0.00 0.00 0.00 1.89
2280 4121 1.793414 TAGCTTCTCCCTGCTATGCA 58.207 50.000 0.00 0.00 40.35 3.96
2281 4122 2.765122 CTTAGCTTCTCCCTGCTATGC 58.235 52.381 0.00 0.00 40.81 3.14
2282 4123 2.103771 TGCTTAGCTTCTCCCTGCTATG 59.896 50.000 5.60 0.00 40.81 2.23
2283 4124 2.368221 CTGCTTAGCTTCTCCCTGCTAT 59.632 50.000 5.60 0.00 40.81 2.97
2284 4125 1.759445 CTGCTTAGCTTCTCCCTGCTA 59.241 52.381 5.60 0.00 40.35 3.49
2285 4126 0.540923 CTGCTTAGCTTCTCCCTGCT 59.459 55.000 5.60 0.00 42.67 4.24
2286 4127 0.463474 CCTGCTTAGCTTCTCCCTGC 60.463 60.000 5.60 0.00 0.00 4.85
2287 4128 0.908198 ACCTGCTTAGCTTCTCCCTG 59.092 55.000 5.60 0.00 0.00 4.45
2288 4129 2.112190 GTACCTGCTTAGCTTCTCCCT 58.888 52.381 5.60 0.00 0.00 4.20
2289 4130 2.101750 GAGTACCTGCTTAGCTTCTCCC 59.898 54.545 5.60 0.00 0.00 4.30
2290 4131 2.101750 GGAGTACCTGCTTAGCTTCTCC 59.898 54.545 5.60 10.90 34.48 3.71
2291 4132 2.761208 TGGAGTACCTGCTTAGCTTCTC 59.239 50.000 5.60 6.06 37.04 2.87
2306 4147 2.684943 TCTTGCCGGGATAATGGAGTA 58.315 47.619 2.18 0.00 0.00 2.59
2308 4149 2.498167 CTTCTTGCCGGGATAATGGAG 58.502 52.381 2.18 0.00 0.00 3.86
2498 4339 1.587054 GCACTGCTCACGGTCTACT 59.413 57.895 0.00 0.00 31.05 2.57
2517 4358 2.655364 CCGCCGATGTAGCTGTCG 60.655 66.667 0.00 3.60 37.58 4.35
2520 4361 1.878522 GTGACCGCCGATGTAGCTG 60.879 63.158 0.00 0.00 0.00 4.24
2523 4364 1.298413 CGAGTGACCGCCGATGTAG 60.298 63.158 0.00 0.00 0.00 2.74
2527 4368 3.379445 AACCGAGTGACCGCCGAT 61.379 61.111 0.00 0.00 0.00 4.18
2574 4415 1.075979 TCATCGACATCGCCAACACG 61.076 55.000 0.00 0.00 39.60 4.49
2789 4630 4.587306 CATTTTGCGCGTAACTGATACAT 58.413 39.130 9.79 0.00 33.89 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.