Multiple sequence alignment - TraesCS7B01G231500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G231500 chr7B 100.000 6142 0 0 1 6142 434365761 434359620 0.000000e+00 11343.0
1 TraesCS7B01G231500 chr7B 92.654 5173 216 59 71 5199 433872751 433867699 0.000000e+00 7297.0
2 TraesCS7B01G231500 chr7B 91.882 1663 86 22 843 2494 212775890 212777514 0.000000e+00 2278.0
3 TraesCS7B01G231500 chr7B 83.107 959 98 28 1 920 434173546 434172613 0.000000e+00 815.0
4 TraesCS7B01G231500 chr7B 89.172 314 24 5 2525 2837 212777636 212777940 3.470000e-102 383.0
5 TraesCS7B01G231500 chr7B 95.745 235 8 2 5272 5506 434167019 434166787 1.620000e-100 377.0
6 TraesCS7B01G231500 chr7B 83.387 313 30 13 5201 5503 212780252 212780552 2.820000e-68 270.0
7 TraesCS7B01G231500 chr7B 89.560 182 19 0 5511 5692 517117322 517117141 1.330000e-56 231.0
8 TraesCS7B01G231500 chr7B 93.939 99 5 1 5135 5233 434360561 434360464 1.380000e-31 148.0
9 TraesCS7B01G231500 chr7B 93.939 99 5 1 5201 5298 434360627 434360529 1.380000e-31 148.0
10 TraesCS7B01G231500 chr7B 89.535 86 4 4 3257 3337 212778020 212778105 3.030000e-18 104.0
11 TraesCS7B01G231500 chr7D 92.663 4825 188 63 443 5199 417931814 417927088 0.000000e+00 6796.0
12 TraesCS7B01G231500 chr7D 93.793 2191 66 19 1047 3225 418057180 418055048 0.000000e+00 3229.0
13 TraesCS7B01G231500 chr7D 94.297 1999 78 9 3219 5199 418054078 418052098 0.000000e+00 3027.0
14 TraesCS7B01G231500 chr7D 93.876 1437 62 9 3230 4643 418902206 418900773 0.000000e+00 2143.0
15 TraesCS7B01G231500 chr7D 93.737 1437 63 11 3230 4643 418614364 418612932 0.000000e+00 2130.0
16 TraesCS7B01G231500 chr7D 88.068 1869 107 49 86 1938 418905128 418903360 0.000000e+00 2109.0
17 TraesCS7B01G231500 chr7D 88.809 1528 68 45 443 1938 418617473 418616017 0.000000e+00 1779.0
18 TraesCS7B01G231500 chr7D 94.184 1152 57 8 1999 3142 418903358 418902209 0.000000e+00 1748.0
19 TraesCS7B01G231500 chr7D 90.748 789 45 11 3876 4643 418394481 418393700 0.000000e+00 1027.0
20 TraesCS7B01G231500 chr7D 96.046 607 24 0 4627 5233 418900758 418900152 0.000000e+00 989.0
21 TraesCS7B01G231500 chr7D 96.046 607 23 1 4627 5233 418612917 418612312 0.000000e+00 987.0
22 TraesCS7B01G231500 chr7D 93.801 613 35 3 4627 5237 418393685 418393074 0.000000e+00 918.0
23 TraesCS7B01G231500 chr7D 94.128 579 30 3 2566 3142 418614943 418614367 0.000000e+00 878.0
24 TraesCS7B01G231500 chr7D 93.509 570 30 5 3325 3891 418396271 418395706 0.000000e+00 841.0
25 TraesCS7B01G231500 chr7D 92.308 585 37 6 1999 2577 418616015 418615433 0.000000e+00 824.0
26 TraesCS7B01G231500 chr7D 83.385 644 46 26 443 1056 418069747 418069135 1.950000e-149 540.0
27 TraesCS7B01G231500 chr7D 96.689 302 7 3 5201 5501 418900250 418899951 3.310000e-137 499.0
28 TraesCS7B01G231500 chr7D 96.358 302 8 3 5201 5501 418612410 418612111 1.540000e-135 494.0
29 TraesCS7B01G231500 chr7D 87.066 317 18 6 5201 5506 418393176 418392872 2.740000e-88 337.0
30 TraesCS7B01G231500 chr7A 93.478 3496 122 31 1782 5237 483946292 483942863 0.000000e+00 5096.0
31 TraesCS7B01G231500 chr7A 95.492 1708 49 9 3505 5199 483488808 483487116 0.000000e+00 2702.0
32 TraesCS7B01G231500 chr7A 92.683 1353 50 12 2168 3509 483494288 483492974 0.000000e+00 1905.0
33 TraesCS7B01G231500 chr7A 94.322 951 41 5 784 1734 483495789 483494852 0.000000e+00 1445.0
34 TraesCS7B01G231500 chr7A 94.156 924 38 7 811 1734 483947192 483946285 0.000000e+00 1393.0
35 TraesCS7B01G231500 chr7A 92.224 643 43 4 3251 3891 483746833 483746196 0.000000e+00 904.0
36 TraesCS7B01G231500 chr7A 92.154 599 35 5 3879 4471 483744965 483744373 0.000000e+00 835.0
37 TraesCS7B01G231500 chr7A 95.441 329 14 1 4896 5224 483654903 483654576 1.960000e-144 523.0
38 TraesCS7B01G231500 chr7A 91.049 391 21 8 1782 2172 483494859 483494483 3.280000e-142 516.0
39 TraesCS7B01G231500 chr7A 93.220 236 16 0 4663 4898 483690269 483690034 1.270000e-91 348.0
40 TraesCS7B01G231500 chr7A 82.331 266 38 8 5201 5464 483487180 483486922 8.010000e-54 222.0
41 TraesCS7B01G231500 chr7A 86.170 188 6 9 5201 5382 483942970 483942797 1.050000e-42 185.0
42 TraesCS7B01G231500 chr7A 87.097 155 7 4 5201 5354 483654665 483654523 4.930000e-36 163.0
43 TraesCS7B01G231500 chr2B 94.092 457 15 2 5697 6142 749289471 749289016 0.000000e+00 684.0
44 TraesCS7B01G231500 chr2B 93.654 457 18 2 5697 6142 678556116 678555660 0.000000e+00 673.0
45 TraesCS7B01G231500 chr2B 86.334 461 47 9 5697 6142 232791361 232791820 7.160000e-134 488.0
46 TraesCS7B01G231500 chr2B 99.457 184 1 0 5511 5694 678556340 678556157 9.860000e-88 335.0
47 TraesCS7B01G231500 chr2B 96.196 184 7 0 5511 5694 749289695 749289512 1.000000e-77 302.0
48 TraesCS7B01G231500 chr6D 93.261 460 17 2 5697 6142 472923867 472924326 0.000000e+00 665.0
49 TraesCS7B01G231500 chr1A 93.217 457 17 3 5697 6142 497781237 497780784 0.000000e+00 660.0
50 TraesCS7B01G231500 chr1A 95.604 182 8 0 5511 5692 497781461 497781280 6.020000e-75 292.0
51 TraesCS7B01G231500 chr1A 92.188 64 2 3 1936 1997 53412015 53412077 3.050000e-13 87.9
52 TraesCS7B01G231500 chr6A 93.187 455 17 4 5697 6140 169893986 169893535 0.000000e+00 656.0
53 TraesCS7B01G231500 chr6A 95.604 182 8 0 5511 5692 169894210 169894029 6.020000e-75 292.0
54 TraesCS7B01G231500 chr5A 90.652 460 29 2 5697 6142 622995449 622994990 3.170000e-167 599.0
55 TraesCS7B01G231500 chr2D 89.565 460 34 2 5697 6142 636591263 636590804 6.910000e-159 571.0
56 TraesCS7B01G231500 chr2D 93.478 184 10 2 5511 5692 636591489 636591306 7.840000e-69 272.0
57 TraesCS7B01G231500 chr5B 93.125 320 22 0 1270 1589 101893620 101893939 2.590000e-128 470.0
58 TraesCS7B01G231500 chr5B 91.237 194 10 1 1605 1798 290922982 290922796 2.200000e-64 257.0
59 TraesCS7B01G231500 chr6B 92.073 328 15 1 5697 6013 634997767 634997440 9.390000e-123 451.0
60 TraesCS7B01G231500 chr6B 96.739 184 6 0 5511 5694 634997991 634997808 2.150000e-79 307.0
61 TraesCS7B01G231500 chr6B 91.444 187 9 1 1612 1798 704982549 704982728 3.680000e-62 250.0
62 TraesCS7B01G231500 chr6B 95.172 145 7 0 1654 1798 518610854 518610998 4.790000e-56 230.0
63 TraesCS7B01G231500 chr4A 90.310 258 19 1 1032 1289 375969013 375968762 3.550000e-87 333.0
64 TraesCS7B01G231500 chr3A 89.011 273 17 3 5881 6142 38599387 38599657 5.940000e-85 326.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G231500 chr7B 434359620 434365761 6141 True 11343.000000 11343 100.000000 1 6142 1 chr7B.!!$R4 6141
1 TraesCS7B01G231500 chr7B 433867699 433872751 5052 True 7297.000000 7297 92.654000 71 5199 1 chr7B.!!$R1 5128
2 TraesCS7B01G231500 chr7B 434172613 434173546 933 True 815.000000 815 83.107000 1 920 1 chr7B.!!$R3 919
3 TraesCS7B01G231500 chr7B 212775890 212780552 4662 False 758.750000 2278 88.494000 843 5503 4 chr7B.!!$F1 4660
4 TraesCS7B01G231500 chr7D 417927088 417931814 4726 True 6796.000000 6796 92.663000 443 5199 1 chr7D.!!$R1 4756
5 TraesCS7B01G231500 chr7D 418052098 418057180 5082 True 3128.000000 3229 94.045000 1047 5199 2 chr7D.!!$R3 4152
6 TraesCS7B01G231500 chr7D 418899951 418905128 5177 True 1497.600000 2143 93.772600 86 5501 5 chr7D.!!$R6 5415
7 TraesCS7B01G231500 chr7D 418612111 418617473 5362 True 1182.000000 2130 93.564333 443 5501 6 chr7D.!!$R5 5058
8 TraesCS7B01G231500 chr7D 418392872 418396271 3399 True 780.750000 1027 91.281000 3325 5506 4 chr7D.!!$R4 2181
9 TraesCS7B01G231500 chr7D 418069135 418069747 612 True 540.000000 540 83.385000 443 1056 1 chr7D.!!$R2 613
10 TraesCS7B01G231500 chr7A 483942797 483947192 4395 True 2224.666667 5096 91.268000 811 5382 3 chr7A.!!$R6 4571
11 TraesCS7B01G231500 chr7A 483486922 483488808 1886 True 1462.000000 2702 88.911500 3505 5464 2 chr7A.!!$R2 1959
12 TraesCS7B01G231500 chr7A 483492974 483495789 2815 True 1288.666667 1905 92.684667 784 3509 3 chr7A.!!$R3 2725
13 TraesCS7B01G231500 chr7A 483744373 483746833 2460 True 869.500000 904 92.189000 3251 4471 2 chr7A.!!$R5 1220
14 TraesCS7B01G231500 chr2B 678555660 678556340 680 True 504.000000 673 96.555500 5511 6142 2 chr2B.!!$R1 631
15 TraesCS7B01G231500 chr2B 749289016 749289695 679 True 493.000000 684 95.144000 5511 6142 2 chr2B.!!$R2 631
16 TraesCS7B01G231500 chr1A 497780784 497781461 677 True 476.000000 660 94.410500 5511 6142 2 chr1A.!!$R1 631
17 TraesCS7B01G231500 chr6A 169893535 169894210 675 True 474.000000 656 94.395500 5511 6140 2 chr6A.!!$R1 629
18 TraesCS7B01G231500 chr2D 636590804 636591489 685 True 421.500000 571 91.521500 5511 6142 2 chr2D.!!$R1 631
19 TraesCS7B01G231500 chr6B 634997440 634997991 551 True 379.000000 451 94.406000 5511 6013 2 chr6B.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.172578 GTCGATGTGATGACACCGGA 59.827 55.0 9.46 0.00 45.40 5.14 F
323 335 0.179156 CATGAGGCAACGATGTTGGC 60.179 55.0 23.66 23.66 44.22 4.52 F
326 338 0.179156 GAGGCAACGATGTTGGCATG 60.179 55.0 29.72 0.72 46.01 4.06 F
329 341 0.733566 GCAACGATGTTGGCATGGTG 60.734 55.0 11.26 0.00 42.02 4.17 F
1997 2136 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.0 0.00 0.00 0.00 2.24 F
2943 3909 0.614415 TTGGGGATGTCAATGGTGCC 60.614 55.0 0.00 0.00 0.00 5.01 F
4838 8611 0.617249 CTGCCTGGAGGAGGTTCTCT 60.617 60.0 0.00 0.00 44.97 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1381 0.930726 AGAAGGAGGACGAGGAGGAT 59.069 55.000 0.0 0.0 0.00 3.24 R
1972 2111 1.002087 CCCTCCGTCCCACAATATAGC 59.998 57.143 0.0 0.0 0.00 2.97 R
1985 2124 2.188817 AGCAAGATTTACTCCCTCCGT 58.811 47.619 0.0 0.0 0.00 4.69 R
2050 2189 5.070770 AGCACGCAAATTTCAATATGGAA 57.929 34.783 0.0 0.0 0.00 3.53 R
3411 5768 1.181786 CTCGTCTCTCCAAGAAGCCT 58.818 55.000 0.0 0.0 35.21 4.58 R
4875 8648 1.278985 CCTGTAGGACATTGGTGAGCA 59.721 52.381 0.0 0.0 37.39 4.26 R
5790 9626 0.600255 GCGCCAACATATAGACCGCT 60.600 55.000 0.0 0.0 37.27 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.039357 AGTCGACGTGGCGAGGTG 62.039 66.667 10.46 0.00 41.49 4.00
23 24 2.030562 CGTGGCGAGGTGGAACTT 59.969 61.111 0.00 0.00 36.74 2.66
30 31 1.248785 CGAGGTGGAACTTCCGGAGA 61.249 60.000 3.34 0.00 40.26 3.71
39 40 3.650409 CTTCCGGAGAAGGTCGATG 57.350 57.895 3.34 0.00 44.97 3.84
47 48 2.166459 GGAGAAGGTCGATGTGATGACA 59.834 50.000 0.00 0.00 36.83 3.58
50 51 0.173481 AGGTCGATGTGATGACACCG 59.827 55.000 0.00 0.00 45.40 4.94
52 53 0.172578 GTCGATGTGATGACACCGGA 59.827 55.000 9.46 0.00 45.40 5.14
61 62 3.083997 GACACCGGAGCCCCAGAT 61.084 66.667 9.46 0.00 0.00 2.90
63 64 3.866582 CACCGGAGCCCCAGATCC 61.867 72.222 9.46 0.00 45.64 3.36
130 131 0.745486 TCAATGAGGTGATGGCGCAG 60.745 55.000 10.83 0.00 0.00 5.18
137 138 2.110967 GTGATGGCGCAGTGATGCT 61.111 57.895 10.83 0.00 0.00 3.79
138 139 1.377594 TGATGGCGCAGTGATGCTT 60.378 52.632 10.83 0.00 0.00 3.91
203 204 0.655733 AACGTGACAAAGCAAGTCGG 59.344 50.000 0.00 0.00 38.83 4.79
247 250 2.783135 GACAAGGTGATGATGTGGTGT 58.217 47.619 0.00 0.00 0.00 4.16
248 251 3.149196 GACAAGGTGATGATGTGGTGTT 58.851 45.455 0.00 0.00 0.00 3.32
253 256 1.464608 GTGATGATGTGGTGTTGTCGG 59.535 52.381 0.00 0.00 0.00 4.79
255 258 2.300437 TGATGATGTGGTGTTGTCGGTA 59.700 45.455 0.00 0.00 0.00 4.02
312 315 0.249120 ACGTCGAAATCCATGAGGCA 59.751 50.000 0.00 0.00 33.74 4.75
320 332 2.425143 ATCCATGAGGCAACGATGTT 57.575 45.000 0.00 0.00 46.39 2.71
321 333 1.452110 TCCATGAGGCAACGATGTTG 58.548 50.000 5.34 5.34 46.39 3.33
322 334 0.452987 CCATGAGGCAACGATGTTGG 59.547 55.000 11.26 0.00 46.39 3.77
323 335 0.179156 CATGAGGCAACGATGTTGGC 60.179 55.000 23.66 23.66 44.22 4.52
324 336 0.608856 ATGAGGCAACGATGTTGGCA 60.609 50.000 29.72 16.00 46.01 4.92
325 337 0.608856 TGAGGCAACGATGTTGGCAT 60.609 50.000 29.72 18.53 46.01 4.40
326 338 0.179156 GAGGCAACGATGTTGGCATG 60.179 55.000 29.72 0.72 46.01 4.06
327 339 1.153784 GGCAACGATGTTGGCATGG 60.154 57.895 25.40 0.00 43.47 3.66
328 340 1.586028 GCAACGATGTTGGCATGGT 59.414 52.632 11.26 0.00 44.17 3.55
329 341 0.733566 GCAACGATGTTGGCATGGTG 60.734 55.000 11.26 0.00 42.02 4.17
330 342 0.880441 CAACGATGTTGGCATGGTGA 59.120 50.000 1.77 0.00 42.02 4.02
331 343 1.473677 CAACGATGTTGGCATGGTGAT 59.526 47.619 1.77 0.00 42.02 3.06
332 344 1.097232 ACGATGTTGGCATGGTGATG 58.903 50.000 0.00 0.00 41.45 3.07
333 345 1.097232 CGATGTTGGCATGGTGATGT 58.903 50.000 0.00 0.00 35.07 3.06
367 379 1.153309 CAGCCGAGGTGATGATGCA 60.153 57.895 0.00 0.00 32.22 3.96
504 519 4.106197 TCACGTTTCCGAAAAATGTTTGG 58.894 39.130 0.00 0.00 37.88 3.28
516 531 9.227490 CCGAAAAATGTTTGGGAATTTTAAAAC 57.773 29.630 3.33 0.00 43.41 2.43
526 541 6.574350 TGGGAATTTTAAAACATGTTCGTGT 58.426 32.000 12.39 0.58 0.00 4.49
527 542 6.697892 TGGGAATTTTAAAACATGTTCGTGTC 59.302 34.615 12.39 3.65 0.00 3.67
569 584 9.805966 GGAATTTCAAATTTTCGTTTCATTACC 57.194 29.630 0.00 0.00 0.00 2.85
657 672 6.516718 TGTTTGTGTTTTGAAAACTTCTCCA 58.483 32.000 20.06 9.73 35.35 3.86
818 850 1.393539 CAAACCGCTACAGTGAATCGG 59.606 52.381 15.99 15.99 45.04 4.18
997 1055 4.360405 TCCCCTTGCCCTTTCCGC 62.360 66.667 0.00 0.00 0.00 5.54
1313 1381 3.321648 AGCACCATGGGAGCGTCA 61.322 61.111 18.09 0.00 43.81 4.35
1318 1386 1.070445 CCATGGGAGCGTCATCCTC 59.930 63.158 2.85 0.00 39.50 3.71
1319 1387 1.070445 CATGGGAGCGTCATCCTCC 59.930 63.158 0.00 0.00 46.54 4.30
1320 1388 1.074926 ATGGGAGCGTCATCCTCCT 60.075 57.895 7.32 0.00 46.48 3.69
1321 1389 1.118356 ATGGGAGCGTCATCCTCCTC 61.118 60.000 7.32 0.00 46.48 3.71
1322 1390 2.725008 GGAGCGTCATCCTCCTCG 59.275 66.667 0.33 0.00 44.40 4.63
1517 1593 4.038282 TGCAAGAAACCTAGTACGTTCTCA 59.962 41.667 0.00 0.00 0.00 3.27
1646 1726 5.875359 GGAAAGATTCACGAATGTAGGTTCT 59.125 40.000 0.00 0.00 0.00 3.01
1647 1727 6.371825 GGAAAGATTCACGAATGTAGGTTCTT 59.628 38.462 0.00 0.00 0.00 2.52
1648 1728 6.727824 AAGATTCACGAATGTAGGTTCTTG 57.272 37.500 0.00 0.00 0.00 3.02
1649 1729 5.794894 AGATTCACGAATGTAGGTTCTTGT 58.205 37.500 0.00 0.00 31.50 3.16
1650 1730 6.931838 AGATTCACGAATGTAGGTTCTTGTA 58.068 36.000 0.00 0.00 31.50 2.41
1651 1731 7.036220 AGATTCACGAATGTAGGTTCTTGTAG 58.964 38.462 0.00 0.00 31.50 2.74
1652 1732 5.068234 TCACGAATGTAGGTTCTTGTAGG 57.932 43.478 0.00 0.00 31.50 3.18
1704 1784 4.028187 GTCAATTTCGATTTTCTGCATCGC 60.028 41.667 1.80 0.00 42.73 4.58
1950 2089 7.914427 AATTAAAATTTACTCCCTCCATCCC 57.086 36.000 0.00 0.00 0.00 3.85
1954 2093 5.487861 AATTTACTCCCTCCATCCCAAAT 57.512 39.130 0.00 0.00 0.00 2.32
1955 2094 6.606241 AATTTACTCCCTCCATCCCAAATA 57.394 37.500 0.00 0.00 0.00 1.40
1956 2095 6.803587 ATTTACTCCCTCCATCCCAAATAT 57.196 37.500 0.00 0.00 0.00 1.28
1958 2097 7.715267 TTTACTCCCTCCATCCCAAATATAA 57.285 36.000 0.00 0.00 0.00 0.98
1959 2098 7.905144 TTACTCCCTCCATCCCAAATATAAT 57.095 36.000 0.00 0.00 0.00 1.28
1960 2099 8.998957 TTACTCCCTCCATCCCAAATATAATA 57.001 34.615 0.00 0.00 0.00 0.98
1961 2100 9.588432 TTACTCCCTCCATCCCAAATATAATAT 57.412 33.333 0.00 0.00 0.00 1.28
1962 2101 8.107196 ACTCCCTCCATCCCAAATATAATATC 57.893 38.462 0.00 0.00 0.00 1.63
1963 2102 7.136822 TCCCTCCATCCCAAATATAATATCG 57.863 40.000 0.00 0.00 0.00 2.92
1964 2103 6.676632 TCCCTCCATCCCAAATATAATATCGT 59.323 38.462 0.00 0.00 0.00 3.73
1965 2104 7.183839 TCCCTCCATCCCAAATATAATATCGTT 59.816 37.037 0.00 0.00 0.00 3.85
1966 2105 7.834181 CCCTCCATCCCAAATATAATATCGTTT 59.166 37.037 0.00 0.00 0.00 3.60
1967 2106 9.243105 CCTCCATCCCAAATATAATATCGTTTT 57.757 33.333 0.00 0.00 0.00 2.43
1969 2108 9.238368 TCCATCCCAAATATAATATCGTTTTCC 57.762 33.333 0.00 0.00 0.00 3.13
1970 2109 9.019656 CCATCCCAAATATAATATCGTTTTCCA 57.980 33.333 0.00 0.00 0.00 3.53
1973 2112 8.573035 TCCCAAATATAATATCGTTTTCCAAGC 58.427 33.333 0.00 0.00 0.00 4.01
1985 2124 4.638421 CGTTTTCCAAGCTATATTGTGGGA 59.362 41.667 0.10 0.00 0.00 4.37
1997 2136 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.000 0.00 0.00 0.00 2.24
2636 3582 3.247006 AGCCGATGTTTACAGTCGATT 57.753 42.857 12.83 0.00 37.55 3.34
2772 3725 3.521126 AGTGCTCTTGAAGTCCCATATGT 59.479 43.478 1.24 0.00 0.00 2.29
2781 3740 4.263905 TGAAGTCCCATATGTTTGGCTCTT 60.264 41.667 1.24 4.70 35.29 2.85
2782 3741 4.322057 AGTCCCATATGTTTGGCTCTTT 57.678 40.909 1.24 0.00 35.29 2.52
2783 3742 4.273318 AGTCCCATATGTTTGGCTCTTTC 58.727 43.478 1.24 0.00 35.29 2.62
2784 3743 4.016444 GTCCCATATGTTTGGCTCTTTCA 58.984 43.478 1.24 0.00 35.29 2.69
2785 3744 4.096984 GTCCCATATGTTTGGCTCTTTCAG 59.903 45.833 1.24 0.00 35.29 3.02
2786 3745 4.019174 CCCATATGTTTGGCTCTTTCAGT 58.981 43.478 1.24 0.00 35.29 3.41
2804 3769 8.383175 TCTTTCAGTTTCAGGTATAAGGTGAAT 58.617 33.333 0.00 0.00 30.50 2.57
2943 3909 0.614415 TTGGGGATGTCAATGGTGCC 60.614 55.000 0.00 0.00 0.00 5.01
3204 4172 7.693951 CCAATATTTACAGTTCTTCGCTTTCTG 59.306 37.037 0.00 0.00 0.00 3.02
4008 7687 5.772521 CTTACATTTTGTCCTTTGGGTCTG 58.227 41.667 0.00 0.00 0.00 3.51
4122 7801 4.965814 TGCCTGGTTCATATTCAGATCTC 58.034 43.478 0.00 0.00 0.00 2.75
4306 7993 5.373262 GGTTTGCATTAACATTTTCGCAAG 58.627 37.500 3.80 0.00 40.15 4.01
4599 8303 9.684702 AATAGGGGTGAGTATTTCCTTTAGATA 57.315 33.333 0.00 0.00 0.00 1.98
4838 8611 0.617249 CTGCCTGGAGGAGGTTCTCT 60.617 60.000 0.00 0.00 44.97 3.10
5119 8898 6.483851 GCGTTGCGATATACTCTATACATG 57.516 41.667 0.00 0.00 0.00 3.21
5120 8899 6.028368 GCGTTGCGATATACTCTATACATGT 58.972 40.000 2.69 2.69 0.00 3.21
5121 8900 7.184779 GCGTTGCGATATACTCTATACATGTA 58.815 38.462 8.27 8.27 0.00 2.29
5182 8961 8.398665 GCACTATTACTGTTTTCCTTCCTTATG 58.601 37.037 0.00 0.00 0.00 1.90
5217 9001 4.852134 AAAATGTTACATCAGCTGCACA 57.148 36.364 9.47 6.89 0.00 4.57
5218 9002 5.395682 AAAATGTTACATCAGCTGCACAT 57.604 34.783 9.47 8.89 34.85 3.21
5219 9003 6.513806 AAAATGTTACATCAGCTGCACATA 57.486 33.333 9.47 0.00 33.13 2.29
5220 9004 6.704289 AAATGTTACATCAGCTGCACATAT 57.296 33.333 9.47 0.00 33.13 1.78
5221 9005 5.684550 ATGTTACATCAGCTGCACATATG 57.315 39.130 9.47 9.81 32.72 1.78
5239 9023 8.213518 CACATATGCACTATTACTGTTTTCCT 57.786 34.615 1.58 0.00 0.00 3.36
5240 9024 8.677300 CACATATGCACTATTACTGTTTTCCTT 58.323 33.333 1.58 0.00 0.00 3.36
5241 9025 8.893727 ACATATGCACTATTACTGTTTTCCTTC 58.106 33.333 1.58 0.00 0.00 3.46
5242 9026 6.759497 ATGCACTATTACTGTTTTCCTTCC 57.241 37.500 0.00 0.00 0.00 3.46
5243 9027 5.876357 TGCACTATTACTGTTTTCCTTCCT 58.124 37.500 0.00 0.00 0.00 3.36
5244 9028 6.303839 TGCACTATTACTGTTTTCCTTCCTT 58.696 36.000 0.00 0.00 0.00 3.36
5245 9029 6.206634 TGCACTATTACTGTTTTCCTTCCTTG 59.793 38.462 0.00 0.00 0.00 3.61
5246 9030 6.206829 GCACTATTACTGTTTTCCTTCCTTGT 59.793 38.462 0.00 0.00 0.00 3.16
5247 9031 7.389607 GCACTATTACTGTTTTCCTTCCTTGTA 59.610 37.037 0.00 0.00 0.00 2.41
5248 9032 9.449719 CACTATTACTGTTTTCCTTCCTTGTAT 57.550 33.333 0.00 0.00 0.00 2.29
5252 9036 9.975218 ATTACTGTTTTCCTTCCTTGTATATGT 57.025 29.630 0.00 0.00 0.00 2.29
5253 9037 7.687941 ACTGTTTTCCTTCCTTGTATATGTG 57.312 36.000 0.00 0.00 0.00 3.21
5254 9038 7.231467 ACTGTTTTCCTTCCTTGTATATGTGT 58.769 34.615 0.00 0.00 0.00 3.72
5255 9039 7.174946 ACTGTTTTCCTTCCTTGTATATGTGTG 59.825 37.037 0.00 0.00 0.00 3.82
5256 9040 6.432783 TGTTTTCCTTCCTTGTATATGTGTGG 59.567 38.462 0.00 0.00 0.00 4.17
5257 9041 5.772393 TTCCTTCCTTGTATATGTGTGGT 57.228 39.130 0.00 0.00 0.00 4.16
5258 9042 5.097742 TCCTTCCTTGTATATGTGTGGTG 57.902 43.478 0.00 0.00 0.00 4.17
5259 9043 4.780554 TCCTTCCTTGTATATGTGTGGTGA 59.219 41.667 0.00 0.00 0.00 4.02
5260 9044 5.249622 TCCTTCCTTGTATATGTGTGGTGAA 59.750 40.000 0.00 0.00 0.00 3.18
5261 9045 5.943416 CCTTCCTTGTATATGTGTGGTGAAA 59.057 40.000 0.00 0.00 0.00 2.69
5262 9046 6.432783 CCTTCCTTGTATATGTGTGGTGAAAA 59.567 38.462 0.00 0.00 0.00 2.29
5263 9047 7.040062 CCTTCCTTGTATATGTGTGGTGAAAAA 60.040 37.037 0.00 0.00 0.00 1.94
5448 9233 2.238144 CAACTCTGGACATGGATCCACT 59.762 50.000 18.99 4.78 44.14 4.00
5490 9284 4.899352 AGTCTGATCCTTGTAGCAAACT 57.101 40.909 0.00 0.00 0.00 2.66
5506 9300 4.944930 AGCAAACTAATTGTGGCGGTAATA 59.055 37.500 0.00 0.00 41.32 0.98
5507 9301 5.592688 AGCAAACTAATTGTGGCGGTAATAT 59.407 36.000 0.00 0.00 41.32 1.28
5508 9302 5.685511 GCAAACTAATTGTGGCGGTAATATG 59.314 40.000 0.00 0.00 41.32 1.78
5509 9303 6.205784 CAAACTAATTGTGGCGGTAATATGG 58.794 40.000 0.00 0.00 34.16 2.74
5742 9578 1.689273 GAGTCAGTGTCAGTGGTTCCT 59.311 52.381 7.82 0.00 0.00 3.36
5790 9626 3.421919 TCTGTGGCTGATGATGTTGAA 57.578 42.857 0.00 0.00 0.00 2.69
5798 9634 3.785486 CTGATGATGTTGAAGCGGTCTA 58.215 45.455 0.00 0.00 0.00 2.59
5884 9720 4.308458 TTGCGGTCACCCACTCGG 62.308 66.667 0.00 0.00 37.81 4.63
5930 9766 1.374125 TGCGTGACAAGGTCGATGG 60.374 57.895 0.00 0.00 34.95 3.51
6102 9949 5.716703 TCAGTCTCTTCAGTTGTCCATATGA 59.283 40.000 3.65 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.215647 CTCCGGAAGTTCCACCTCG 59.784 63.158 21.76 7.07 35.91 4.63
12 13 0.974383 TTCTCCGGAAGTTCCACCTC 59.026 55.000 21.76 0.00 35.91 3.85
17 18 0.108756 CGACCTTCTCCGGAAGTTCC 60.109 60.000 12.27 12.27 45.36 3.62
18 19 0.886563 TCGACCTTCTCCGGAAGTTC 59.113 55.000 5.23 0.00 45.36 3.01
23 24 0.323087 TCACATCGACCTTCTCCGGA 60.323 55.000 2.93 2.93 0.00 5.14
30 31 2.386661 GGTGTCATCACATCGACCTT 57.613 50.000 0.00 0.00 45.45 3.50
37 38 1.221840 GGCTCCGGTGTCATCACAT 59.778 57.895 2.61 0.00 45.45 3.21
38 39 2.662596 GGCTCCGGTGTCATCACA 59.337 61.111 2.61 0.00 45.45 3.58
39 40 2.125106 GGGCTCCGGTGTCATCAC 60.125 66.667 10.72 0.00 43.19 3.06
47 48 4.414956 TGGATCTGGGGCTCCGGT 62.415 66.667 12.38 0.00 40.36 5.28
50 51 3.883549 GGCTGGATCTGGGGCTCC 61.884 72.222 0.00 0.00 0.00 4.70
52 53 4.804420 TCGGCTGGATCTGGGGCT 62.804 66.667 0.00 0.00 0.00 5.19
111 112 0.745486 CTGCGCCATCACCTCATTGA 60.745 55.000 4.18 0.00 0.00 2.57
113 114 1.028330 CACTGCGCCATCACCTCATT 61.028 55.000 4.18 0.00 0.00 2.57
130 131 0.743097 GGATTCTGGCCAAGCATCAC 59.257 55.000 7.01 0.00 30.79 3.06
137 138 2.125147 CTCGCGGATTCTGGCCAA 60.125 61.111 7.01 0.00 0.00 4.52
138 139 4.161295 CCTCGCGGATTCTGGCCA 62.161 66.667 4.71 4.71 0.00 5.36
172 173 4.641645 CACGTTGCCTGGCCTGGA 62.642 66.667 31.43 14.02 0.00 3.86
182 183 1.466855 GACTTGCTTTGTCACGTTGC 58.533 50.000 0.00 0.00 34.80 4.17
223 226 0.984230 ACATCATCACCTTGTCGGGT 59.016 50.000 0.00 0.00 40.73 5.28
247 250 3.210232 TGTTTGGACCAATACCGACAA 57.790 42.857 7.99 0.00 0.00 3.18
248 251 2.932855 TGTTTGGACCAATACCGACA 57.067 45.000 7.99 6.16 0.00 4.35
253 256 5.447279 CGCTATCACTTGTTTGGACCAATAC 60.447 44.000 7.99 9.75 0.00 1.89
255 258 3.440173 CGCTATCACTTGTTTGGACCAAT 59.560 43.478 7.99 0.00 0.00 3.16
294 297 1.062587 GTTGCCTCATGGATTTCGACG 59.937 52.381 0.00 0.00 34.57 5.12
312 315 1.473677 CATCACCATGCCAACATCGTT 59.526 47.619 0.00 0.00 32.87 3.85
320 332 2.101783 GGAATTCACATCACCATGCCA 58.898 47.619 7.93 0.00 32.57 4.92
321 333 2.101783 TGGAATTCACATCACCATGCC 58.898 47.619 7.93 0.00 32.57 4.40
322 334 3.777478 CTTGGAATTCACATCACCATGC 58.223 45.455 7.93 0.00 32.57 4.06
323 335 3.429822 GGCTTGGAATTCACATCACCATG 60.430 47.826 7.93 0.00 35.92 3.66
324 336 2.762327 GGCTTGGAATTCACATCACCAT 59.238 45.455 7.93 0.00 0.00 3.55
325 337 2.170166 GGCTTGGAATTCACATCACCA 58.830 47.619 7.93 0.00 0.00 4.17
326 338 1.133025 CGGCTTGGAATTCACATCACC 59.867 52.381 7.93 0.00 0.00 4.02
327 339 1.133025 CCGGCTTGGAATTCACATCAC 59.867 52.381 7.93 0.00 42.00 3.06
328 340 1.462616 CCGGCTTGGAATTCACATCA 58.537 50.000 7.93 0.00 42.00 3.07
329 341 0.101219 GCCGGCTTGGAATTCACATC 59.899 55.000 22.15 0.00 42.00 3.06
330 342 1.322538 GGCCGGCTTGGAATTCACAT 61.323 55.000 28.56 0.00 42.00 3.21
331 343 1.976474 GGCCGGCTTGGAATTCACA 60.976 57.895 28.56 0.03 42.00 3.58
332 344 1.937546 CTGGCCGGCTTGGAATTCAC 61.938 60.000 28.56 5.64 42.00 3.18
333 345 1.678635 CTGGCCGGCTTGGAATTCA 60.679 57.895 28.56 12.14 42.00 2.57
367 379 3.250040 GTCAAGCTAATGTCAACCACGTT 59.750 43.478 0.00 0.00 37.94 3.99
398 410 5.581126 TTGAAAAACAACATCTCTGCACT 57.419 34.783 0.00 0.00 33.18 4.40
504 519 7.924103 AGACACGAACATGTTTTAAAATTCC 57.076 32.000 13.36 0.00 31.24 3.01
558 573 7.899974 TGTGAACAAAATTTGGTAATGAAACG 58.100 30.769 10.71 0.00 34.12 3.60
672 689 7.872113 AGAGAACATCTTCAAAACTTCAACT 57.128 32.000 0.00 0.00 32.99 3.16
736 755 5.790495 CGTTTTCTTGAAGGAACATCGATTC 59.210 40.000 0.00 0.00 0.00 2.52
747 773 6.806120 AAAAATCGTTCGTTTTCTTGAAGG 57.194 33.333 0.00 0.00 0.00 3.46
773 803 3.625745 CTGTACCAGCGGTTTTCCT 57.374 52.632 5.57 0.00 37.09 3.36
818 850 1.079336 GGGGTCCGTTCTGTAGCAC 60.079 63.158 0.00 0.00 0.00 4.40
997 1055 4.426313 GTTGGGGGAGGCGGGAAG 62.426 72.222 0.00 0.00 0.00 3.46
1090 1149 1.377536 GGATTCTTGAGGAGTGCTGC 58.622 55.000 0.00 0.00 0.00 5.25
1313 1381 0.930726 AGAAGGAGGACGAGGAGGAT 59.069 55.000 0.00 0.00 0.00 3.24
1318 1386 1.098712 CGAGGAGAAGGAGGACGAGG 61.099 65.000 0.00 0.00 0.00 4.63
1319 1387 1.098712 CCGAGGAGAAGGAGGACGAG 61.099 65.000 0.00 0.00 0.00 4.18
1320 1388 1.077644 CCGAGGAGAAGGAGGACGA 60.078 63.158 0.00 0.00 0.00 4.20
1321 1389 1.077644 TCCGAGGAGAAGGAGGACG 60.078 63.158 0.00 0.00 31.95 4.79
1322 1390 2.495809 GTCCGAGGAGAAGGAGGAC 58.504 63.158 0.00 0.00 43.55 3.85
1517 1593 6.214005 ACATCCACAGAAATGATTCCCAAATT 59.786 34.615 0.00 0.00 36.12 1.82
1646 1726 3.558321 GCATGGACACCTACAACCTACAA 60.558 47.826 0.00 0.00 0.00 2.41
1647 1727 2.027561 GCATGGACACCTACAACCTACA 60.028 50.000 0.00 0.00 0.00 2.74
1648 1728 2.236395 AGCATGGACACCTACAACCTAC 59.764 50.000 0.00 0.00 0.00 3.18
1649 1729 2.546899 AGCATGGACACCTACAACCTA 58.453 47.619 0.00 0.00 0.00 3.08
1650 1730 1.362224 AGCATGGACACCTACAACCT 58.638 50.000 0.00 0.00 0.00 3.50
1651 1731 2.200373 AAGCATGGACACCTACAACC 57.800 50.000 0.00 0.00 0.00 3.77
1652 1732 4.202245 TCTAAGCATGGACACCTACAAC 57.798 45.455 0.00 0.00 0.00 3.32
1704 1784 7.062749 TGCAGGGTATTAGACAAGTATAAGG 57.937 40.000 0.00 0.00 0.00 2.69
1944 2083 9.019656 TGGAAAACGATATTATATTTGGGATGG 57.980 33.333 0.00 0.00 0.00 3.51
1948 2087 8.576442 AGCTTGGAAAACGATATTATATTTGGG 58.424 33.333 0.00 0.00 0.00 4.12
1958 2097 7.174946 CCCACAATATAGCTTGGAAAACGATAT 59.825 37.037 1.24 0.00 0.00 1.63
1959 2098 6.485313 CCCACAATATAGCTTGGAAAACGATA 59.515 38.462 1.24 0.00 0.00 2.92
1960 2099 5.299279 CCCACAATATAGCTTGGAAAACGAT 59.701 40.000 1.24 0.00 0.00 3.73
1961 2100 4.638421 CCCACAATATAGCTTGGAAAACGA 59.362 41.667 1.24 0.00 0.00 3.85
1962 2101 4.638421 TCCCACAATATAGCTTGGAAAACG 59.362 41.667 1.24 0.00 0.00 3.60
1963 2102 5.448632 CGTCCCACAATATAGCTTGGAAAAC 60.449 44.000 1.24 0.00 0.00 2.43
1964 2103 4.638421 CGTCCCACAATATAGCTTGGAAAA 59.362 41.667 1.24 0.00 0.00 2.29
1965 2104 4.196193 CGTCCCACAATATAGCTTGGAAA 58.804 43.478 1.24 0.00 0.00 3.13
1966 2105 3.433031 CCGTCCCACAATATAGCTTGGAA 60.433 47.826 1.24 0.00 0.00 3.53
1967 2106 2.104111 CCGTCCCACAATATAGCTTGGA 59.896 50.000 1.24 0.00 0.00 3.53
1968 2107 2.104111 TCCGTCCCACAATATAGCTTGG 59.896 50.000 0.00 0.00 0.00 3.61
1969 2108 3.393800 CTCCGTCCCACAATATAGCTTG 58.606 50.000 0.00 0.00 0.00 4.01
1970 2109 2.368875 CCTCCGTCCCACAATATAGCTT 59.631 50.000 0.00 0.00 0.00 3.74
1971 2110 1.971357 CCTCCGTCCCACAATATAGCT 59.029 52.381 0.00 0.00 0.00 3.32
1972 2111 1.002087 CCCTCCGTCCCACAATATAGC 59.998 57.143 0.00 0.00 0.00 2.97
1973 2112 2.563179 CTCCCTCCGTCCCACAATATAG 59.437 54.545 0.00 0.00 0.00 1.31
1985 2124 2.188817 AGCAAGATTTACTCCCTCCGT 58.811 47.619 0.00 0.00 0.00 4.69
2050 2189 5.070770 AGCACGCAAATTTCAATATGGAA 57.929 34.783 0.00 0.00 0.00 3.53
2244 2590 6.594788 ACATGGACTGCTAAATGTGAAATT 57.405 33.333 0.00 0.00 32.18 1.82
2404 2754 6.151691 CCTTCACAGGTACAACATTTTCATG 58.848 40.000 0.00 0.00 35.06 3.07
2568 3011 2.762327 AGCCATTGCATAACTGGGAAAG 59.238 45.455 0.00 0.00 41.13 2.62
2571 3014 2.509548 AGTAGCCATTGCATAACTGGGA 59.490 45.455 0.00 0.00 41.13 4.37
2636 3582 1.334160 TTCGTGCTGGTGACCTAAGA 58.666 50.000 2.11 0.00 0.00 2.10
2772 3725 3.631250 ACCTGAAACTGAAAGAGCCAAA 58.369 40.909 0.00 0.00 37.43 3.28
2781 3740 8.934023 AAATTCACCTTATACCTGAAACTGAA 57.066 30.769 0.00 0.00 0.00 3.02
2782 3741 8.934023 AAAATTCACCTTATACCTGAAACTGA 57.066 30.769 0.00 0.00 0.00 3.41
2943 3909 7.102346 AGAAGACTGGTCATGTAAATGAAGAG 58.898 38.462 0.00 0.00 31.60 2.85
3204 4172 7.958025 CACTTCTATAAGAAAAGCGGAAACTTC 59.042 37.037 0.00 0.00 33.19 3.01
3411 5768 1.181786 CTCGTCTCTCCAAGAAGCCT 58.818 55.000 0.00 0.00 35.21 4.58
3482 5873 9.733556 TTAAGAAAGGAATGTTGAAGCATAGTA 57.266 29.630 0.00 0.00 0.00 1.82
3835 6252 7.595502 CGATATTCAGAGTAATTAGCCGAAAGT 59.404 37.037 0.00 0.00 0.00 2.66
4008 7687 2.772287 ACTTTCACAAGCTGCTCCTAC 58.228 47.619 1.00 0.00 32.57 3.18
4122 7801 1.952296 GCAGGAAGCCTTACATCATGG 59.048 52.381 0.00 0.00 37.23 3.66
4306 7993 7.515643 ACATAAGTACGCAACACAGTTTATTC 58.484 34.615 0.00 0.00 0.00 1.75
4599 8303 8.781196 CAATTATGCATAGAAGATTACTGCACT 58.219 33.333 6.50 0.00 44.73 4.40
4838 8611 4.198530 TGTTGTGCATCTTTCTTCACTGA 58.801 39.130 0.00 0.00 0.00 3.41
4875 8648 1.278985 CCTGTAGGACATTGGTGAGCA 59.721 52.381 0.00 0.00 37.39 4.26
5118 8897 9.549078 TGATGTACACAACAAGAGTTATTTACA 57.451 29.630 0.00 0.00 42.70 2.41
5120 8899 8.717821 GCTGATGTACACAACAAGAGTTATTTA 58.282 33.333 0.00 0.00 42.70 1.40
5121 8900 7.445402 AGCTGATGTACACAACAAGAGTTATTT 59.555 33.333 0.00 0.00 42.70 1.40
5214 8998 8.213518 AGGAAAACAGTAATAGTGCATATGTG 57.786 34.615 4.29 0.00 0.00 3.21
5215 8999 8.807948 AAGGAAAACAGTAATAGTGCATATGT 57.192 30.769 4.29 0.00 0.00 2.29
5216 9000 8.345565 GGAAGGAAAACAGTAATAGTGCATATG 58.654 37.037 0.00 0.00 0.00 1.78
5217 9001 8.275040 AGGAAGGAAAACAGTAATAGTGCATAT 58.725 33.333 0.00 0.00 0.00 1.78
5218 9002 7.630082 AGGAAGGAAAACAGTAATAGTGCATA 58.370 34.615 0.00 0.00 0.00 3.14
5219 9003 6.485171 AGGAAGGAAAACAGTAATAGTGCAT 58.515 36.000 0.00 0.00 0.00 3.96
5220 9004 5.876357 AGGAAGGAAAACAGTAATAGTGCA 58.124 37.500 0.00 0.00 0.00 4.57
5221 9005 6.206829 ACAAGGAAGGAAAACAGTAATAGTGC 59.793 38.462 0.00 0.00 0.00 4.40
5222 9006 7.745620 ACAAGGAAGGAAAACAGTAATAGTG 57.254 36.000 0.00 0.00 0.00 2.74
5227 9011 9.226606 CACATATACAAGGAAGGAAAACAGTAA 57.773 33.333 0.00 0.00 0.00 2.24
5228 9012 8.380099 ACACATATACAAGGAAGGAAAACAGTA 58.620 33.333 0.00 0.00 0.00 2.74
5229 9013 7.174946 CACACATATACAAGGAAGGAAAACAGT 59.825 37.037 0.00 0.00 0.00 3.55
5230 9014 7.362056 CCACACATATACAAGGAAGGAAAACAG 60.362 40.741 0.00 0.00 0.00 3.16
5231 9015 6.432783 CCACACATATACAAGGAAGGAAAACA 59.567 38.462 0.00 0.00 0.00 2.83
5232 9016 6.433093 ACCACACATATACAAGGAAGGAAAAC 59.567 38.462 0.00 0.00 0.00 2.43
5233 9017 6.432783 CACCACACATATACAAGGAAGGAAAA 59.567 38.462 0.00 0.00 0.00 2.29
5234 9018 5.943416 CACCACACATATACAAGGAAGGAAA 59.057 40.000 0.00 0.00 0.00 3.13
5235 9019 5.249622 TCACCACACATATACAAGGAAGGAA 59.750 40.000 0.00 0.00 0.00 3.36
5236 9020 4.780554 TCACCACACATATACAAGGAAGGA 59.219 41.667 0.00 0.00 0.00 3.36
5237 9021 5.097742 TCACCACACATATACAAGGAAGG 57.902 43.478 0.00 0.00 0.00 3.46
5238 9022 7.447374 TTTTCACCACACATATACAAGGAAG 57.553 36.000 0.00 0.00 0.00 3.46
5239 9023 7.825331 TTTTTCACCACACATATACAAGGAA 57.175 32.000 0.00 0.00 0.00 3.36
5260 9044 5.199024 TGTGCAGCTGATGTAACATTTTT 57.801 34.783 20.43 0.00 0.00 1.94
5261 9045 4.852134 TGTGCAGCTGATGTAACATTTT 57.148 36.364 20.43 0.00 0.00 1.82
5262 9046 6.500910 CATATGTGCAGCTGATGTAACATTT 58.499 36.000 20.43 10.23 38.49 2.32
5263 9047 6.068473 CATATGTGCAGCTGATGTAACATT 57.932 37.500 20.43 6.78 38.49 2.71
5264 9048 5.684550 CATATGTGCAGCTGATGTAACAT 57.315 39.130 20.43 18.50 39.84 2.71
5414 9199 3.578282 TCCAGAGTTGACTAGCACAATGA 59.422 43.478 6.30 0.00 0.00 2.57
5448 9233 6.069088 AGACTTCCATAAACAACCCATGGATA 60.069 38.462 15.22 0.00 45.77 2.59
5490 9284 4.138290 CCACCATATTACCGCCACAATTA 58.862 43.478 0.00 0.00 0.00 1.40
5506 9300 1.630878 GAGGAGAGAAACACCCACCAT 59.369 52.381 0.00 0.00 0.00 3.55
5507 9301 1.056660 GAGGAGAGAAACACCCACCA 58.943 55.000 0.00 0.00 0.00 4.17
5508 9302 0.037232 CGAGGAGAGAAACACCCACC 60.037 60.000 0.00 0.00 0.00 4.61
5509 9303 0.680061 ACGAGGAGAGAAACACCCAC 59.320 55.000 0.00 0.00 0.00 4.61
5694 9489 3.369787 CCTCCAGTTGCTCACATGACATA 60.370 47.826 0.00 0.00 0.00 2.29
5790 9626 0.600255 GCGCCAACATATAGACCGCT 60.600 55.000 0.00 0.00 37.27 5.52
5798 9634 0.833287 AGAGTCAGGCGCCAACATAT 59.167 50.000 31.54 10.52 0.00 1.78
5884 9720 4.452733 CTTCCCGACGGCCACCTC 62.453 72.222 8.86 0.00 0.00 3.85
5895 9731 1.301716 CACAGACACCACCTTCCCG 60.302 63.158 0.00 0.00 0.00 5.14
6055 9902 1.340308 ACCATACATCAAGCAGCTGCA 60.340 47.619 38.24 20.45 45.16 4.41
6102 9949 3.577919 AGACCACAGAGACAAGTTAGGT 58.422 45.455 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.