Multiple sequence alignment - TraesCS7B01G230000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G230000 chr7B 100.000 2123 0 0 1001 3123 432187135 432189257 0.000000e+00 3921.0
1 TraesCS7B01G230000 chr7B 100.000 416 0 0 1 416 432186135 432186550 0.000000e+00 769.0
2 TraesCS7B01G230000 chr7D 93.096 1463 82 9 1001 2446 416412412 416413872 0.000000e+00 2124.0
3 TraesCS7B01G230000 chr7D 90.148 406 19 5 15 416 416411939 416412327 2.780000e-140 508.0
4 TraesCS7B01G230000 chr7D 87.727 220 24 1 2883 3102 416423827 416424043 1.440000e-63 254.0
5 TraesCS7B01G230000 chr7D 88.742 151 14 2 2444 2592 416414107 416414256 6.880000e-42 182.0
6 TraesCS7B01G230000 chr7D 81.437 167 10 6 2711 2856 416423600 416423766 1.970000e-22 117.0
7 TraesCS7B01G230000 chr7A 94.010 1369 67 6 1001 2355 479344279 479345646 0.000000e+00 2060.0
8 TraesCS7B01G230000 chr7A 91.408 419 15 10 1 416 479343794 479344194 3.520000e-154 555.0
9 TraesCS7B01G230000 chr7A 94.495 218 11 1 2883 3100 479346422 479346638 4.990000e-88 335.0
10 TraesCS7B01G230000 chr7A 90.476 168 11 3 2427 2592 479345703 479345867 1.890000e-52 217.0
11 TraesCS7B01G230000 chr7A 90.984 122 10 1 2591 2711 479345953 479346074 2.490000e-36 163.0
12 TraesCS7B01G230000 chr7A 97.753 89 1 1 2789 2877 479346290 479346377 5.390000e-33 152.0
13 TraesCS7B01G230000 chr4B 95.342 365 15 1 1160 1522 537785689 537786053 2.090000e-161 579.0
14 TraesCS7B01G230000 chr4B 93.103 58 4 0 359 416 537784909 537784966 5.550000e-13 86.1
15 TraesCS7B01G230000 chr5B 92.513 374 25 2 1001 1371 609742873 609743246 1.650000e-147 532.0
16 TraesCS7B01G230000 chr1B 92.412 369 23 3 1003 1366 171843341 171843709 3.570000e-144 521.0
17 TraesCS7B01G230000 chr3B 91.444 374 29 2 1001 1371 737252018 737252391 7.730000e-141 510.0
18 TraesCS7B01G230000 chr3B 91.223 376 28 3 1001 1371 49346965 49346590 9.990000e-140 507.0
19 TraesCS7B01G230000 chr4A 91.176 374 28 3 1001 1371 647854855 647854484 1.290000e-138 503.0
20 TraesCS7B01G230000 chr6B 90.642 374 32 2 1001 1371 79513380 79513753 7.780000e-136 494.0
21 TraesCS7B01G230000 chr2B 94.915 59 3 0 358 416 625471191 625471133 3.320000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G230000 chr7B 432186135 432189257 3122 False 2345.000000 3921 100.000000 1 3123 2 chr7B.!!$F1 3122
1 TraesCS7B01G230000 chr7D 416411939 416414256 2317 False 938.000000 2124 90.662000 15 2592 3 chr7D.!!$F1 2577
2 TraesCS7B01G230000 chr7A 479343794 479346638 2844 False 580.333333 2060 93.187667 1 3100 6 chr7A.!!$F1 3099
3 TraesCS7B01G230000 chr4B 537784909 537786053 1144 False 332.550000 579 94.222500 359 1522 2 chr4B.!!$F1 1163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.033208 ATCGCACCCCATCAACCAAT 60.033 50.000 0.0 0.0 0.0 3.16 F
84 88 0.179156 CATCAACCAATCACGCCTGC 60.179 55.000 0.0 0.0 0.0 4.85 F
1716 2213 1.067985 TGTTTGTGTGCTGTGTTGTGG 60.068 47.619 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1862 0.255033 TTCTCCTGGATCTCGACGGA 59.745 55.0 0.0 0.0 0.0 4.69 R
2011 2512 0.742281 CCACCTCTTCTGCATCCACG 60.742 60.0 0.0 0.0 0.0 4.94 R
2697 3586 0.469705 AGCCCCAACATCACAGCAAA 60.470 50.0 0.0 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.563702 TGGTAGTGTCCAAACCGAAAC 58.436 47.619 0.00 0.00 35.98 2.78
75 76 0.033208 ATCGCACCCCATCAACCAAT 60.033 50.000 0.00 0.00 0.00 3.16
76 77 0.679640 TCGCACCCCATCAACCAATC 60.680 55.000 0.00 0.00 0.00 2.67
77 78 0.964860 CGCACCCCATCAACCAATCA 60.965 55.000 0.00 0.00 0.00 2.57
78 79 0.532115 GCACCCCATCAACCAATCAC 59.468 55.000 0.00 0.00 0.00 3.06
84 88 0.179156 CATCAACCAATCACGCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
142 146 2.286772 CGAAACCAAACCCAAACTCGAG 60.287 50.000 11.84 11.84 0.00 4.04
1116 1284 3.078836 CCGTTCCCCGCTCCCTTA 61.079 66.667 0.00 0.00 34.38 2.69
1127 1295 1.369321 CTCCCTTATCCTGCTCCGC 59.631 63.158 0.00 0.00 0.00 5.54
1135 1303 1.908340 ATCCTGCTCCGCTGCTTCTT 61.908 55.000 0.00 0.00 0.00 2.52
1146 1314 1.658095 GCTGCTTCTTCGATGAGTGAC 59.342 52.381 0.94 0.00 0.00 3.67
1150 1318 2.920490 GCTTCTTCGATGAGTGACTGAC 59.080 50.000 0.00 0.00 0.00 3.51
1155 1644 1.199327 TCGATGAGTGACTGACCGAAC 59.801 52.381 0.00 0.00 0.00 3.95
1366 1862 1.837051 TCGCAGGTGGTGGAGAAGT 60.837 57.895 0.00 0.00 0.00 3.01
1640 2137 3.646715 TTCAAGGCCTCCCACCCG 61.647 66.667 5.23 0.00 0.00 5.28
1643 2140 4.995058 AAGGCCTCCCACCCGGAA 62.995 66.667 5.23 0.00 41.40 4.30
1671 2168 3.993584 TTGCCGCCGTACGTCCTT 61.994 61.111 15.21 0.00 41.42 3.36
1688 2185 2.107552 TCCTTTTCATCCCCACGTTCTT 59.892 45.455 0.00 0.00 0.00 2.52
1716 2213 1.067985 TGTTTGTGTGCTGTGTTGTGG 60.068 47.619 0.00 0.00 0.00 4.17
2011 2512 1.134551 GTGGGAGATGAGAAGGCAGAC 60.135 57.143 0.00 0.00 0.00 3.51
2013 2514 0.820871 GGAGATGAGAAGGCAGACGT 59.179 55.000 0.00 0.00 0.00 4.34
2077 2578 1.684049 AGAAGACGCCCCAGAGGAG 60.684 63.158 0.00 0.00 42.15 3.69
2083 2584 2.041265 GCCCCAGAGGAGGAGGAA 59.959 66.667 0.00 0.00 38.24 3.36
2168 2671 3.658757 TCTGTTTTGTAAATGGCAGGC 57.341 42.857 0.00 0.00 0.00 4.85
2185 2692 1.112113 GGCGTTCTATCTGTCCTGGA 58.888 55.000 0.00 0.00 0.00 3.86
2308 2815 3.118298 TGATGTGGTGGTCGATGAATGAT 60.118 43.478 0.00 0.00 0.00 2.45
2314 2821 4.949238 TGGTGGTCGATGAATGATTGAATT 59.051 37.500 0.00 0.00 0.00 2.17
2356 2863 8.511465 GCATTTGCAATATATGTGAAACTAGG 57.489 34.615 0.00 0.00 41.59 3.02
2413 2973 6.220930 TCCAATACTAGGATATTGACGTTGC 58.779 40.000 12.46 0.00 42.73 4.17
2449 3247 8.915057 ATAAGATGGATCAAGAATGGTAGTTG 57.085 34.615 0.00 0.00 0.00 3.16
2469 3269 7.902920 AGTTGCCCATCATTACTGAAATAAT 57.097 32.000 0.00 0.00 34.37 1.28
2543 3343 2.371841 TGTTGTGAGTGGCCTTGATAGT 59.628 45.455 3.32 0.00 0.00 2.12
2581 3381 1.892474 GCAACAATTGTCCTGGCCTAA 59.108 47.619 12.39 0.00 0.00 2.69
2605 3494 3.439857 AAGCCTCAAGATAACCAAGCA 57.560 42.857 0.00 0.00 0.00 3.91
2614 3503 7.417911 CCTCAAGATAACCAAGCAGTATCAGTA 60.418 40.741 0.00 0.00 0.00 2.74
2640 3529 9.857957 AAATGTTTACTCTACAGCTACTTAGTC 57.142 33.333 0.00 0.00 0.00 2.59
2650 3539 3.057456 CAGCTACTTAGTCGACCTGTGTT 60.057 47.826 13.01 0.00 0.00 3.32
2653 3542 3.644884 ACTTAGTCGACCTGTGTTGAG 57.355 47.619 13.01 1.08 35.52 3.02
2730 3735 2.500229 TGGGGCTTTCAGTTTTACTCG 58.500 47.619 0.00 0.00 0.00 4.18
2740 3745 3.893200 TCAGTTTTACTCGGACTTGAGGA 59.107 43.478 0.00 0.00 40.39 3.71
2746 3751 6.554334 TTTACTCGGACTTGAGGAAATTTG 57.446 37.500 0.00 0.00 42.48 2.32
2747 3752 3.412386 ACTCGGACTTGAGGAAATTTGG 58.588 45.455 0.00 0.00 40.39 3.28
2752 3757 4.220602 CGGACTTGAGGAAATTTGGGAATT 59.779 41.667 0.00 0.00 37.06 2.17
2765 3770 2.238521 TGGGAATTGCCTTCAGTTCAC 58.761 47.619 17.69 0.50 41.19 3.18
2766 3771 2.158475 TGGGAATTGCCTTCAGTTCACT 60.158 45.455 17.69 0.00 41.33 3.41
2773 3778 1.338579 GCCTTCAGTTCACTAGCAGCT 60.339 52.381 0.00 0.00 0.00 4.24
2779 3784 6.818644 CCTTCAGTTCACTAGCAGCTTAATTA 59.181 38.462 0.00 0.00 0.00 1.40
2780 3785 7.497249 CCTTCAGTTCACTAGCAGCTTAATTAT 59.503 37.037 0.00 0.00 0.00 1.28
2790 3795 6.694445 AGCAGCTTAATTATAGGATCCAGT 57.306 37.500 15.82 4.18 0.00 4.00
2791 3796 6.706295 AGCAGCTTAATTATAGGATCCAGTC 58.294 40.000 15.82 0.00 0.00 3.51
2835 3862 0.467384 TGCAGCATCTCTAGCCCTTC 59.533 55.000 0.00 0.00 0.00 3.46
2904 3970 6.103997 GGAACCGTCTGATACAAGTTAATGA 58.896 40.000 0.00 0.00 0.00 2.57
2935 4001 1.072852 GCAATTGCCCCAGCCAAAA 59.927 52.632 20.06 0.00 38.69 2.44
2940 4006 0.620556 TTGCCCCAGCCAAAACAAAA 59.379 45.000 0.00 0.00 38.69 2.44
2951 4017 6.539826 CCAGCCAAAACAAAAAGAAAGAAGAT 59.460 34.615 0.00 0.00 0.00 2.40
2979 4045 3.322466 CCGGCTCAGGTGGAGGTT 61.322 66.667 0.00 0.00 44.22 3.50
2992 4058 3.691609 GGTGGAGGTTCATTCTCACAATC 59.308 47.826 0.00 0.00 33.18 2.67
2997 4063 5.353678 GGAGGTTCATTCTCACAATCTGAAG 59.646 44.000 0.00 0.00 33.18 3.02
3028 4094 4.771590 TTGTGAGATGGAAAATGCTGTC 57.228 40.909 0.00 0.00 0.00 3.51
3035 4101 2.726821 TGGAAAATGCTGTCTCCATCC 58.273 47.619 0.00 0.00 32.97 3.51
3040 4106 5.048224 GGAAAATGCTGTCTCCATCCATATG 60.048 44.000 0.00 0.00 0.00 1.78
3090 4156 1.963515 CCTTCCAAAGGTTCCAACAGG 59.036 52.381 0.00 0.00 43.95 4.00
3100 4166 2.949644 GGTTCCAACAGGTGTATATGGC 59.050 50.000 0.00 0.00 0.00 4.40
3101 4167 3.616219 GTTCCAACAGGTGTATATGGCA 58.384 45.455 0.00 0.00 0.00 4.92
3102 4168 4.207165 GTTCCAACAGGTGTATATGGCAT 58.793 43.478 4.88 4.88 0.00 4.40
3103 4169 5.373222 GTTCCAACAGGTGTATATGGCATA 58.627 41.667 10.07 10.07 0.00 3.14
3104 4170 5.638530 TCCAACAGGTGTATATGGCATAA 57.361 39.130 11.86 0.00 0.00 1.90
3105 4171 5.620206 TCCAACAGGTGTATATGGCATAAG 58.380 41.667 11.86 0.00 0.00 1.73
3106 4172 4.761739 CCAACAGGTGTATATGGCATAAGG 59.238 45.833 11.86 0.00 0.00 2.69
3107 4173 5.456042 CCAACAGGTGTATATGGCATAAGGA 60.456 44.000 11.86 0.00 0.00 3.36
3108 4174 5.228945 ACAGGTGTATATGGCATAAGGAC 57.771 43.478 11.86 10.37 0.00 3.85
3109 4175 4.907875 ACAGGTGTATATGGCATAAGGACT 59.092 41.667 11.86 4.04 0.00 3.85
3110 4176 5.012148 ACAGGTGTATATGGCATAAGGACTC 59.988 44.000 11.86 10.28 0.00 3.36
3111 4177 4.220821 AGGTGTATATGGCATAAGGACTCG 59.779 45.833 11.86 0.00 0.00 4.18
3112 4178 4.495422 GTGTATATGGCATAAGGACTCGG 58.505 47.826 11.86 0.00 0.00 4.63
3113 4179 2.770164 ATATGGCATAAGGACTCGGC 57.230 50.000 11.86 0.00 0.00 5.54
3114 4180 0.685097 TATGGCATAAGGACTCGGCC 59.315 55.000 4.34 0.00 44.82 6.13
3115 4181 1.056700 ATGGCATAAGGACTCGGCCT 61.057 55.000 0.00 0.00 44.85 5.19
3116 4182 1.227674 GGCATAAGGACTCGGCCTG 60.228 63.158 0.00 0.00 41.39 4.85
3117 4183 1.686325 GGCATAAGGACTCGGCCTGA 61.686 60.000 0.00 0.00 41.39 3.86
3118 4184 0.394565 GCATAAGGACTCGGCCTGAT 59.605 55.000 0.00 0.00 38.58 2.90
3119 4185 1.606737 GCATAAGGACTCGGCCTGATC 60.607 57.143 0.00 0.00 38.58 2.92
3120 4186 1.688735 CATAAGGACTCGGCCTGATCA 59.311 52.381 0.00 0.00 38.58 2.92
3121 4187 1.403814 TAAGGACTCGGCCTGATCAG 58.596 55.000 16.24 16.24 38.58 2.90
3122 4188 1.965754 AAGGACTCGGCCTGATCAGC 61.966 60.000 17.76 12.31 38.58 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.754946 TCGGTTTGGACACTACCATC 57.245 50.000 0.00 0.00 39.82 3.51
25 26 5.514279 GCTAGACATGAAAATTGGATTCCG 58.486 41.667 0.00 0.00 0.00 4.30
167 171 1.209640 GAGTGGACGGTCGAGACAC 59.790 63.158 5.55 4.74 0.00 3.67
197 201 1.300233 GATCTCGTCCGTGGATGGC 60.300 63.158 8.22 0.00 0.00 4.40
286 290 5.525745 ACGAAACAATTTGGGATTTTTGGTC 59.474 36.000 0.78 0.00 0.00 4.02
287 291 5.432645 ACGAAACAATTTGGGATTTTTGGT 58.567 33.333 0.78 0.00 0.00 3.67
1127 1295 2.922387 CAGTCACTCATCGAAGAAGCAG 59.078 50.000 0.00 0.00 43.58 4.24
1135 1303 1.199327 GTTCGGTCAGTCACTCATCGA 59.801 52.381 0.00 0.00 0.00 3.59
1146 1314 1.260561 CAAAACCAGTCGTTCGGTCAG 59.739 52.381 0.00 0.00 33.17 3.51
1150 1318 1.018910 AACCAAAACCAGTCGTTCGG 58.981 50.000 0.00 0.00 31.78 4.30
1155 1644 1.596954 CGCTGAAACCAAAACCAGTCG 60.597 52.381 0.00 0.00 0.00 4.18
1366 1862 0.255033 TTCTCCTGGATCTCGACGGA 59.745 55.000 0.00 0.00 0.00 4.69
1427 1923 1.021920 GTCCGCCTTGCTCTTCTTCC 61.022 60.000 0.00 0.00 0.00 3.46
1640 2137 0.955919 CGGCAACACCCTTCTCTTCC 60.956 60.000 0.00 0.00 33.26 3.46
1643 2140 2.032681 GCGGCAACACCCTTCTCT 59.967 61.111 0.00 0.00 33.26 3.10
1671 2168 4.013728 CCAATAAGAACGTGGGGATGAAA 58.986 43.478 0.00 0.00 0.00 2.69
1688 2185 4.081972 ACACAGCACACAAACAAACCAATA 60.082 37.500 0.00 0.00 0.00 1.90
1716 2213 2.202544 CGCACGGAGAGTCAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
1764 2261 2.600729 CCACTTCTCCCCTGCTGCT 61.601 63.158 0.00 0.00 0.00 4.24
2011 2512 0.742281 CCACCTCTTCTGCATCCACG 60.742 60.000 0.00 0.00 0.00 4.94
2013 2514 0.907486 CTCCACCTCTTCTGCATCCA 59.093 55.000 0.00 0.00 0.00 3.41
2065 2566 3.984186 TTCCTCCTCCTCTGGGGCG 62.984 68.421 0.00 0.00 34.39 6.13
2077 2578 2.838637 TCTCCTCTTCCTCTTCCTCC 57.161 55.000 0.00 0.00 0.00 4.30
2083 2584 3.352648 CTCGTTCTTCTCCTCTTCCTCT 58.647 50.000 0.00 0.00 0.00 3.69
2168 2671 3.512680 GTTGTCCAGGACAGATAGAACG 58.487 50.000 21.87 0.00 43.69 3.95
2185 2692 3.806949 TTAGGCCAAGATTCAGGTTGT 57.193 42.857 5.01 0.00 0.00 3.32
2308 2815 5.234757 GCAATGCAGTGACAGAAAAATTCAA 59.765 36.000 20.00 0.00 0.00 2.69
2314 2821 4.325028 AATGCAATGCAGTGACAGAAAA 57.675 36.364 20.00 0.00 43.65 2.29
2388 2948 6.704493 GCAACGTCAATATCCTAGTATTGGAA 59.296 38.462 11.28 0.00 40.69 3.53
2408 2968 6.092122 TCCATCTTATTTTGTGTAGAGCAACG 59.908 38.462 0.00 0.00 0.00 4.10
2413 2973 9.605275 TCTTGATCCATCTTATTTTGTGTAGAG 57.395 33.333 0.00 0.00 0.00 2.43
2442 3003 4.150897 TCAGTAATGATGGGCAACTACC 57.849 45.455 0.00 0.00 0.00 3.18
2487 3287 1.739371 CGAAACAGCCTAGGCACTACC 60.739 57.143 34.70 18.81 44.88 3.18
2543 3343 6.809630 TGTTGCAACTTGTAGCACAATATA 57.190 33.333 28.61 1.09 41.05 0.86
2581 3381 5.104360 TGCTTGGTTATCTTGAGGCTTAGAT 60.104 40.000 14.83 14.83 35.41 1.98
2614 3503 9.857957 GACTAAGTAGCTGTAGAGTAAACATTT 57.142 33.333 0.00 0.00 0.00 2.32
2625 3514 3.940221 ACAGGTCGACTAAGTAGCTGTAG 59.060 47.826 16.46 0.00 46.81 2.74
2627 3516 2.792878 ACAGGTCGACTAAGTAGCTGT 58.207 47.619 16.46 14.67 44.66 4.40
2640 3529 0.951040 GGCCTTCTCAACACAGGTCG 60.951 60.000 0.00 0.00 0.00 4.79
2650 3539 1.722034 AGTTCAGTCTGGCCTTCTCA 58.278 50.000 3.32 0.00 0.00 3.27
2653 3542 7.631717 AATAATAAAGTTCAGTCTGGCCTTC 57.368 36.000 3.32 0.00 0.00 3.46
2697 3586 0.469705 AGCCCCAACATCACAGCAAA 60.470 50.000 0.00 0.00 0.00 3.68
2702 3591 1.133513 ACTGAAAGCCCCAACATCACA 60.134 47.619 0.00 0.00 37.60 3.58
2703 3592 1.620822 ACTGAAAGCCCCAACATCAC 58.379 50.000 0.00 0.00 37.60 3.06
2730 3735 5.482006 CAATTCCCAAATTTCCTCAAGTCC 58.518 41.667 0.00 0.00 32.69 3.85
2740 3745 4.980339 ACTGAAGGCAATTCCCAAATTT 57.020 36.364 0.00 0.00 37.08 1.82
2746 3751 2.519013 AGTGAACTGAAGGCAATTCCC 58.481 47.619 0.00 0.00 37.08 3.97
2747 3752 3.127721 GCTAGTGAACTGAAGGCAATTCC 59.872 47.826 0.00 0.00 37.08 3.01
2752 3757 1.609061 GCTGCTAGTGAACTGAAGGCA 60.609 52.381 0.00 0.00 0.00 4.75
2765 3770 7.846066 ACTGGATCCTATAATTAAGCTGCTAG 58.154 38.462 14.23 0.00 0.00 3.42
2766 3771 7.454694 TGACTGGATCCTATAATTAAGCTGCTA 59.545 37.037 14.23 0.00 0.00 3.49
2773 3778 8.316946 CAGCTGATGACTGGATCCTATAATTAA 58.683 37.037 8.42 0.00 0.00 1.40
2790 3795 1.600638 CCAGACTGCCAGCTGATGA 59.399 57.895 17.39 0.00 34.06 2.92
2791 3796 2.113433 GCCAGACTGCCAGCTGATG 61.113 63.158 17.39 7.16 34.06 3.07
2835 3862 6.603940 TTTAGTGATCAAAGGATTTTGGGG 57.396 37.500 0.00 0.00 43.11 4.96
2877 3904 2.758979 ACTTGTATCAGACGGTTCCGAT 59.241 45.455 18.28 3.54 0.00 4.18
2879 3906 2.649331 ACTTGTATCAGACGGTTCCG 57.351 50.000 9.81 9.81 0.00 4.30
2926 3992 5.874261 TCTTCTTTCTTTTTGTTTTGGCTGG 59.126 36.000 0.00 0.00 0.00 4.85
2940 4006 7.012799 GCCGGATTAAGATTGATCTTCTTTCTT 59.987 37.037 5.05 8.37 43.27 2.52
2951 4017 2.771943 ACCTGAGCCGGATTAAGATTGA 59.228 45.455 5.05 0.00 0.00 2.57
2979 4045 5.488262 TGGACTTCAGATTGTGAGAATGA 57.512 39.130 0.00 0.00 36.21 2.57
2992 4058 3.754850 TCTCACAATGCAATGGACTTCAG 59.245 43.478 6.73 0.00 0.00 3.02
2997 4063 3.018856 TCCATCTCACAATGCAATGGAC 58.981 45.455 9.47 0.00 40.64 4.02
3028 4094 1.066573 GGTCCTCGCATATGGATGGAG 60.067 57.143 4.56 0.00 34.58 3.86
3035 4101 1.597663 GTTTTCGGGTCCTCGCATATG 59.402 52.381 0.00 0.00 0.00 1.78
3040 4106 1.014564 CAGAGTTTTCGGGTCCTCGC 61.015 60.000 0.00 0.00 0.00 5.03
3090 4156 4.495422 CCGAGTCCTTATGCCATATACAC 58.505 47.826 0.00 0.00 0.00 2.90
3100 4166 1.688735 TGATCAGGCCGAGTCCTTATG 59.311 52.381 0.00 0.00 33.25 1.90
3101 4167 1.967066 CTGATCAGGCCGAGTCCTTAT 59.033 52.381 15.38 0.00 33.25 1.73
3102 4168 1.403814 CTGATCAGGCCGAGTCCTTA 58.596 55.000 15.38 0.00 33.25 2.69
3103 4169 1.965754 GCTGATCAGGCCGAGTCCTT 61.966 60.000 23.89 0.00 33.25 3.36
3104 4170 2.430610 GCTGATCAGGCCGAGTCCT 61.431 63.158 23.89 0.00 36.78 3.85
3105 4171 2.107953 GCTGATCAGGCCGAGTCC 59.892 66.667 23.89 0.93 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.