Multiple sequence alignment - TraesCS7B01G229500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G229500 chr7B 100.000 3654 0 0 3016 6669 431659759 431663412 0.000000e+00 6748.0
1 TraesCS7B01G229500 chr7B 100.000 2527 0 0 1 2527 431656744 431659270 0.000000e+00 4667.0
2 TraesCS7B01G229500 chr7B 93.421 76 5 0 5109 5184 431661810 431661885 5.470000e-21 113.0
3 TraesCS7B01G229500 chr7B 93.421 76 5 0 5067 5142 431661852 431661927 5.470000e-21 113.0
4 TraesCS7B01G229500 chr7D 95.871 3681 106 10 3016 6669 416234605 416238266 0.000000e+00 5914.0
5 TraesCS7B01G229500 chr7D 96.059 1827 45 13 715 2527 416232430 416234243 0.000000e+00 2950.0
6 TraesCS7B01G229500 chr7D 90.446 314 17 3 417 718 416231955 416232267 1.040000e-107 401.0
7 TraesCS7B01G229500 chr7D 93.373 166 10 1 2354 2519 382733805 382733641 1.860000e-60 244.0
8 TraesCS7B01G229500 chr7D 92.353 170 12 1 2347 2516 397554909 397555077 2.400000e-59 241.0
9 TraesCS7B01G229500 chr7D 94.681 94 3 2 328 420 416197551 416197643 1.940000e-30 145.0
10 TraesCS7B01G229500 chr7D 80.682 88 5 9 680 759 173708226 173708143 2.600000e-04 58.4
11 TraesCS7B01G229500 chr7A 95.791 3683 115 11 3016 6669 478499502 478503173 0.000000e+00 5906.0
12 TraesCS7B01G229500 chr7A 95.320 1987 68 11 328 2299 478496782 478498758 0.000000e+00 3131.0
13 TraesCS7B01G229500 chr7A 93.939 165 9 1 2353 2517 494786991 494786828 1.440000e-61 248.0
14 TraesCS7B01G229500 chr7A 92.105 76 6 0 5109 5184 478501555 478501630 2.540000e-19 108.0
15 TraesCS7B01G229500 chr7A 85.000 60 7 2 731 789 683233005 683232947 7.220000e-05 60.2
16 TraesCS7B01G229500 chr5D 90.160 935 72 14 1426 2355 62296157 62295238 0.000000e+00 1199.0
17 TraesCS7B01G229500 chr5A 90.064 936 72 15 1426 2355 52329326 52328406 0.000000e+00 1194.0
18 TraesCS7B01G229500 chr5A 92.529 174 11 2 2353 2526 320214243 320214414 1.440000e-61 248.0
19 TraesCS7B01G229500 chr2A 88.901 928 76 18 5757 6669 727917288 727918203 0.000000e+00 1118.0
20 TraesCS7B01G229500 chr2A 98.788 330 4 0 1 330 669842825 669842496 7.450000e-164 588.0
21 TraesCS7B01G229500 chr2A 79.960 499 80 18 5758 6244 727244425 727244915 3.830000e-92 350.0
22 TraesCS7B01G229500 chr2B 87.421 946 86 22 5745 6669 719292964 719293897 0.000000e+00 1057.0
23 TraesCS7B01G229500 chr2B 97.904 334 7 0 1 334 733473472 733473139 4.480000e-161 579.0
24 TraesCS7B01G229500 chr2B 78.672 497 90 14 5758 6244 718969045 718969535 3.880000e-82 316.0
25 TraesCS7B01G229500 chr6B 99.096 332 3 0 1 332 664709793 664709462 1.240000e-166 597.0
26 TraesCS7B01G229500 chr6B 99.091 330 2 1 1 329 216461485 216461156 5.760000e-165 592.0
27 TraesCS7B01G229500 chr6B 98.784 329 4 0 1 329 218027010 218026682 2.680000e-163 586.0
28 TraesCS7B01G229500 chr6B 91.011 178 14 2 2342 2519 226361690 226361515 8.640000e-59 239.0
29 TraesCS7B01G229500 chr3B 99.392 329 2 0 1 329 821841269 821840941 1.240000e-166 597.0
30 TraesCS7B01G229500 chr3B 98.788 330 3 1 1 329 242415042 242415371 2.680000e-163 586.0
31 TraesCS7B01G229500 chr3B 83.333 78 5 7 710 787 94450837 94450768 1.550000e-06 65.8
32 TraesCS7B01G229500 chr5B 99.083 327 3 0 1 327 513855392 513855718 7.450000e-164 588.0
33 TraesCS7B01G229500 chr5B 84.706 170 15 4 1873 2033 123207954 123208121 6.920000e-35 159.0
34 TraesCS7B01G229500 chr5B 84.118 170 16 4 1873 2033 123408288 123408455 3.220000e-33 154.0
35 TraesCS7B01G229500 chr5B 97.368 38 1 0 733 770 551400952 551400989 1.550000e-06 65.8
36 TraesCS7B01G229500 chr5B 88.679 53 5 1 718 770 689949181 689949232 5.580000e-06 63.9
37 TraesCS7B01G229500 chr6A 98.480 329 5 0 1 329 58384075 58384403 1.250000e-161 580.0
38 TraesCS7B01G229500 chr2D 79.960 499 80 18 5758 6244 592790547 592791037 3.830000e-92 350.0
39 TraesCS7B01G229500 chr2D 93.373 166 9 2 2353 2518 296364210 296364047 1.860000e-60 244.0
40 TraesCS7B01G229500 chr2D 90.062 161 14 2 1873 2033 603999388 603999546 2.440000e-49 207.0
41 TraesCS7B01G229500 chr3D 93.902 164 9 1 2353 2516 87925999 87926161 5.170000e-61 246.0
42 TraesCS7B01G229500 chr3A 92.442 172 12 1 2346 2517 600921024 600920854 1.860000e-60 244.0
43 TraesCS7B01G229500 chr4D 95.000 40 2 0 731 770 297926444 297926483 5.580000e-06 63.9
44 TraesCS7B01G229500 chr1B 84.848 66 7 2 731 796 685683476 685683538 5.580000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G229500 chr7B 431656744 431663412 6668 False 2910.250000 6748 96.710500 1 6669 4 chr7B.!!$F1 6668
1 TraesCS7B01G229500 chr7D 416231955 416238266 6311 False 3088.333333 5914 94.125333 417 6669 3 chr7D.!!$F3 6252
2 TraesCS7B01G229500 chr7A 478496782 478503173 6391 False 3048.333333 5906 94.405333 328 6669 3 chr7A.!!$F1 6341
3 TraesCS7B01G229500 chr5D 62295238 62296157 919 True 1199.000000 1199 90.160000 1426 2355 1 chr5D.!!$R1 929
4 TraesCS7B01G229500 chr5A 52328406 52329326 920 True 1194.000000 1194 90.064000 1426 2355 1 chr5A.!!$R1 929
5 TraesCS7B01G229500 chr2A 727917288 727918203 915 False 1118.000000 1118 88.901000 5757 6669 1 chr2A.!!$F2 912
6 TraesCS7B01G229500 chr2B 719292964 719293897 933 False 1057.000000 1057 87.421000 5745 6669 1 chr2B.!!$F2 924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.036010 AGAGGTTGCGAAGATGGTGG 60.036 55.000 0.00 0.00 0.00 4.61 F
285 286 0.107897 AAAGTGGCCGTATGCATCGA 60.108 50.000 16.69 0.00 43.89 3.59 F
291 292 0.319900 GCCGTATGCATCGACCAGAT 60.320 55.000 16.69 0.00 41.01 2.90 F
1243 1432 0.396811 CCTTCGTCAGGGACAAGGTT 59.603 55.000 14.24 0.00 39.39 3.50 F
1349 1539 1.833049 CCTCGCCCTACCCTACCAG 60.833 68.421 0.00 0.00 0.00 4.00 F
3207 3632 0.388659 TGCCTTGTGCCATTGTTCAC 59.611 50.000 0.85 0.85 40.16 3.18 F
3692 4118 0.036105 GGGAAAAAGGCTGGCATTGG 60.036 55.000 3.38 0.00 0.00 3.16 F
5089 5527 1.071699 TCACAAAGTAGCACCCAGTCC 59.928 52.381 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 2019 0.319900 GTGCTTCTGCTTCCTCGACA 60.320 55.000 0.00 0.0 40.48 4.35 R
2120 2319 2.097466 ACGAACAGGACAACTTTGCAAG 59.903 45.455 0.00 0.0 0.00 4.01 R
2130 2329 4.325028 TTTAAGCTACACGAACAGGACA 57.675 40.909 0.00 0.0 0.00 4.02 R
2408 2609 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.0 0.00 5.54 R
3284 3709 0.465460 AGGGCGCACTTTGAAACTCA 60.465 50.000 6.19 0.0 0.00 3.41 R
5089 5527 1.144565 CGGAGTTCTGAGCATCGCTG 61.145 60.000 0.00 0.0 39.88 5.18 R
5357 5810 0.308993 GCACCAGCTTTGTGTCTGTC 59.691 55.000 13.22 0.0 37.91 3.51 R
6512 6990 2.320587 CCGCCCTATGCTTCATCGC 61.321 63.158 0.00 0.0 38.05 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.980233 GTGGCAGGTGGCTGTGAC 60.980 66.667 5.03 0.00 44.01 3.67
18 19 4.624364 TGGCAGGTGGCTGTGACG 62.624 66.667 5.03 0.00 44.01 4.35
27 28 4.110493 GCTGTGACGGCCTCATAC 57.890 61.111 4.74 0.00 0.00 2.39
28 29 1.521681 GCTGTGACGGCCTCATACC 60.522 63.158 4.74 0.00 0.00 2.73
29 30 1.961180 GCTGTGACGGCCTCATACCT 61.961 60.000 4.74 0.00 0.00 3.08
30 31 0.179100 CTGTGACGGCCTCATACCTG 60.179 60.000 0.00 0.00 0.00 4.00
31 32 1.144057 GTGACGGCCTCATACCTGG 59.856 63.158 0.00 0.00 0.00 4.45
36 37 4.937431 GCCTCATACCTGGCGGGC 62.937 72.222 13.63 0.00 39.71 6.13
37 38 4.609018 CCTCATACCTGGCGGGCG 62.609 72.222 13.63 0.88 39.10 6.13
38 39 4.609018 CTCATACCTGGCGGGCGG 62.609 72.222 13.63 2.89 39.10 6.13
54 55 4.115199 GGCCGGGTTGAGGAGCAT 62.115 66.667 2.18 0.00 0.00 3.79
55 56 2.825836 GCCGGGTTGAGGAGCATG 60.826 66.667 2.18 0.00 0.00 4.06
56 57 2.825836 CCGGGTTGAGGAGCATGC 60.826 66.667 10.51 10.51 0.00 4.06
57 58 2.825836 CGGGTTGAGGAGCATGCC 60.826 66.667 15.66 5.80 0.00 4.40
58 59 2.825836 GGGTTGAGGAGCATGCCG 60.826 66.667 15.66 0.00 0.00 5.69
59 60 2.825836 GGTTGAGGAGCATGCCGG 60.826 66.667 15.66 0.00 0.00 6.13
60 61 2.268920 GTTGAGGAGCATGCCGGA 59.731 61.111 15.66 0.00 0.00 5.14
61 62 2.109126 GTTGAGGAGCATGCCGGAC 61.109 63.158 15.66 4.83 0.00 4.79
62 63 2.293318 TTGAGGAGCATGCCGGACT 61.293 57.895 15.66 7.44 0.00 3.85
63 64 2.202987 GAGGAGCATGCCGGACTG 60.203 66.667 15.66 1.63 0.00 3.51
64 65 3.746949 GAGGAGCATGCCGGACTGG 62.747 68.421 15.66 0.00 42.50 4.00
65 66 4.101448 GGAGCATGCCGGACTGGT 62.101 66.667 15.66 6.91 41.21 4.00
66 67 2.821366 GAGCATGCCGGACTGGTG 60.821 66.667 15.66 0.00 41.21 4.17
67 68 4.415150 AGCATGCCGGACTGGTGG 62.415 66.667 15.66 0.00 41.21 4.61
69 70 4.033776 CATGCCGGACTGGTGGGT 62.034 66.667 5.05 0.00 41.21 4.51
70 71 4.033776 ATGCCGGACTGGTGGGTG 62.034 66.667 5.05 0.00 41.21 4.61
89 90 4.910585 CCATACCCGGCAGGCGTC 62.911 72.222 16.17 0.00 40.58 5.19
90 91 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
99 100 3.636231 CAGGCGTCCAGGTTGGGA 61.636 66.667 0.00 0.00 38.32 4.37
121 122 4.949121 ACCTCAGGTCTTAGATGTTAGGT 58.051 43.478 0.00 4.26 0.00 3.08
122 123 5.342866 ACCTCAGGTCTTAGATGTTAGGTT 58.657 41.667 0.00 0.00 30.79 3.50
123 124 5.785940 ACCTCAGGTCTTAGATGTTAGGTTT 59.214 40.000 0.00 0.00 30.79 3.27
124 125 6.109359 CCTCAGGTCTTAGATGTTAGGTTTG 58.891 44.000 0.00 0.00 0.00 2.93
125 126 6.049955 TCAGGTCTTAGATGTTAGGTTTGG 57.950 41.667 0.00 0.00 0.00 3.28
126 127 4.636206 CAGGTCTTAGATGTTAGGTTTGGC 59.364 45.833 0.00 0.00 0.00 4.52
127 128 4.536489 AGGTCTTAGATGTTAGGTTTGGCT 59.464 41.667 0.00 0.00 0.00 4.75
128 129 4.636206 GGTCTTAGATGTTAGGTTTGGCTG 59.364 45.833 0.00 0.00 0.00 4.85
129 130 4.095036 GTCTTAGATGTTAGGTTTGGCTGC 59.905 45.833 0.00 0.00 0.00 5.25
130 131 2.584835 AGATGTTAGGTTTGGCTGCA 57.415 45.000 0.50 0.00 0.00 4.41
131 132 2.875296 AGATGTTAGGTTTGGCTGCAA 58.125 42.857 0.50 0.00 0.00 4.08
132 133 2.821969 AGATGTTAGGTTTGGCTGCAAG 59.178 45.455 0.50 0.00 0.00 4.01
133 134 1.327303 TGTTAGGTTTGGCTGCAAGG 58.673 50.000 0.50 0.00 0.00 3.61
134 135 1.328279 GTTAGGTTTGGCTGCAAGGT 58.672 50.000 0.50 0.00 0.00 3.50
135 136 1.269723 GTTAGGTTTGGCTGCAAGGTC 59.730 52.381 0.50 0.00 0.00 3.85
136 137 0.771127 TAGGTTTGGCTGCAAGGTCT 59.229 50.000 0.50 0.00 0.00 3.85
137 138 0.825010 AGGTTTGGCTGCAAGGTCTG 60.825 55.000 0.50 0.00 0.00 3.51
138 139 1.109323 GGTTTGGCTGCAAGGTCTGT 61.109 55.000 0.50 0.00 0.00 3.41
139 140 0.746659 GTTTGGCTGCAAGGTCTGTT 59.253 50.000 0.50 0.00 0.00 3.16
140 141 1.136891 GTTTGGCTGCAAGGTCTGTTT 59.863 47.619 0.50 0.00 0.00 2.83
141 142 0.746063 TTGGCTGCAAGGTCTGTTTG 59.254 50.000 0.50 0.00 0.00 2.93
142 143 1.108727 TGGCTGCAAGGTCTGTTTGG 61.109 55.000 0.50 0.00 0.00 3.28
143 144 1.109323 GGCTGCAAGGTCTGTTTGGT 61.109 55.000 0.50 0.00 0.00 3.67
144 145 1.604604 GCTGCAAGGTCTGTTTGGTA 58.395 50.000 0.00 0.00 0.00 3.25
145 146 2.162681 GCTGCAAGGTCTGTTTGGTAT 58.837 47.619 0.00 0.00 0.00 2.73
146 147 2.558359 GCTGCAAGGTCTGTTTGGTATT 59.442 45.455 0.00 0.00 0.00 1.89
147 148 3.756434 GCTGCAAGGTCTGTTTGGTATTA 59.244 43.478 0.00 0.00 0.00 0.98
148 149 4.142600 GCTGCAAGGTCTGTTTGGTATTAG 60.143 45.833 0.00 0.00 0.00 1.73
149 150 4.331968 TGCAAGGTCTGTTTGGTATTAGG 58.668 43.478 0.00 0.00 0.00 2.69
150 151 3.128764 GCAAGGTCTGTTTGGTATTAGGC 59.871 47.826 0.00 0.00 0.00 3.93
151 152 3.646736 AGGTCTGTTTGGTATTAGGCC 57.353 47.619 0.00 0.00 35.18 5.19
152 153 2.241430 AGGTCTGTTTGGTATTAGGCCC 59.759 50.000 0.00 0.00 35.54 5.80
153 154 2.025699 GGTCTGTTTGGTATTAGGCCCA 60.026 50.000 0.00 0.00 0.00 5.36
154 155 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
155 156 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
156 157 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
157 158 2.025699 TGTTTGGTATTAGGCCCAGACC 60.026 50.000 9.08 9.08 35.53 3.85
158 159 1.974028 TTGGTATTAGGCCCAGACCA 58.026 50.000 13.86 13.86 38.41 4.02
159 160 2.206322 TGGTATTAGGCCCAGACCAT 57.794 50.000 13.86 0.00 35.26 3.55
160 161 2.054799 TGGTATTAGGCCCAGACCATC 58.945 52.381 13.86 0.00 35.26 3.51
161 162 2.054799 GGTATTAGGCCCAGACCATCA 58.945 52.381 10.84 0.00 0.00 3.07
162 163 2.039084 GGTATTAGGCCCAGACCATCAG 59.961 54.545 10.84 0.00 0.00 2.90
163 164 0.475906 ATTAGGCCCAGACCATCAGC 59.524 55.000 0.00 0.00 0.00 4.26
164 165 1.971505 TTAGGCCCAGACCATCAGCG 61.972 60.000 0.00 0.00 0.00 5.18
167 168 4.864334 CCCAGACCATCAGCGCCC 62.864 72.222 2.29 0.00 0.00 6.13
168 169 4.864334 CCAGACCATCAGCGCCCC 62.864 72.222 2.29 0.00 0.00 5.80
169 170 3.790437 CAGACCATCAGCGCCCCT 61.790 66.667 2.29 0.00 0.00 4.79
170 171 3.011517 AGACCATCAGCGCCCCTT 61.012 61.111 2.29 0.00 0.00 3.95
171 172 2.514824 GACCATCAGCGCCCCTTC 60.515 66.667 2.29 0.00 0.00 3.46
172 173 3.329542 GACCATCAGCGCCCCTTCA 62.330 63.158 2.29 0.00 0.00 3.02
173 174 2.194056 CCATCAGCGCCCCTTCAT 59.806 61.111 2.29 0.00 0.00 2.57
174 175 1.895707 CCATCAGCGCCCCTTCATC 60.896 63.158 2.29 0.00 0.00 2.92
175 176 1.153107 CATCAGCGCCCCTTCATCA 60.153 57.895 2.29 0.00 0.00 3.07
176 177 1.147824 ATCAGCGCCCCTTCATCAG 59.852 57.895 2.29 0.00 0.00 2.90
177 178 1.630126 ATCAGCGCCCCTTCATCAGT 61.630 55.000 2.29 0.00 0.00 3.41
178 179 1.377725 CAGCGCCCCTTCATCAGTT 60.378 57.895 2.29 0.00 0.00 3.16
179 180 0.107703 CAGCGCCCCTTCATCAGTTA 60.108 55.000 2.29 0.00 0.00 2.24
180 181 0.179000 AGCGCCCCTTCATCAGTTAG 59.821 55.000 2.29 0.00 0.00 2.34
181 182 0.178068 GCGCCCCTTCATCAGTTAGA 59.822 55.000 0.00 0.00 0.00 2.10
182 183 1.202698 GCGCCCCTTCATCAGTTAGAT 60.203 52.381 0.00 0.00 37.48 1.98
183 184 2.037251 GCGCCCCTTCATCAGTTAGATA 59.963 50.000 0.00 0.00 34.43 1.98
184 185 3.862642 GCGCCCCTTCATCAGTTAGATAG 60.863 52.174 0.00 0.00 34.43 2.08
185 186 3.306364 CGCCCCTTCATCAGTTAGATAGG 60.306 52.174 0.00 0.00 34.43 2.57
186 187 3.904339 GCCCCTTCATCAGTTAGATAGGA 59.096 47.826 0.00 0.00 35.35 2.94
187 188 4.020662 GCCCCTTCATCAGTTAGATAGGAG 60.021 50.000 0.00 0.00 35.35 3.69
188 189 5.151454 CCCCTTCATCAGTTAGATAGGAGT 58.849 45.833 0.00 0.00 35.35 3.85
189 190 6.315714 CCCCTTCATCAGTTAGATAGGAGTA 58.684 44.000 0.00 0.00 35.35 2.59
190 191 6.435904 CCCCTTCATCAGTTAGATAGGAGTAG 59.564 46.154 0.00 0.00 35.35 2.57
191 192 6.071616 CCCTTCATCAGTTAGATAGGAGTAGC 60.072 46.154 0.00 0.00 35.35 3.58
192 193 6.348950 CCTTCATCAGTTAGATAGGAGTAGCG 60.349 46.154 0.00 0.00 35.35 4.26
193 194 5.866207 TCATCAGTTAGATAGGAGTAGCGA 58.134 41.667 0.00 0.00 34.43 4.93
194 195 5.701750 TCATCAGTTAGATAGGAGTAGCGAC 59.298 44.000 0.00 0.00 34.43 5.19
195 196 5.032327 TCAGTTAGATAGGAGTAGCGACA 57.968 43.478 0.00 0.00 0.00 4.35
196 197 5.057819 TCAGTTAGATAGGAGTAGCGACAG 58.942 45.833 0.00 0.00 0.00 3.51
197 198 5.057819 CAGTTAGATAGGAGTAGCGACAGA 58.942 45.833 0.00 0.00 0.00 3.41
198 199 5.178623 CAGTTAGATAGGAGTAGCGACAGAG 59.821 48.000 0.00 0.00 0.00 3.35
199 200 3.134574 AGATAGGAGTAGCGACAGAGG 57.865 52.381 0.00 0.00 0.00 3.69
200 201 2.440253 AGATAGGAGTAGCGACAGAGGT 59.560 50.000 0.00 0.00 0.00 3.85
201 202 2.803030 TAGGAGTAGCGACAGAGGTT 57.197 50.000 0.00 0.00 0.00 3.50
202 203 1.178276 AGGAGTAGCGACAGAGGTTG 58.822 55.000 0.00 0.00 0.00 3.77
207 208 3.159984 GCGACAGAGGTTGCGAAG 58.840 61.111 0.00 0.00 44.12 3.79
208 209 1.372997 GCGACAGAGGTTGCGAAGA 60.373 57.895 0.00 0.00 44.12 2.87
209 210 0.737715 GCGACAGAGGTTGCGAAGAT 60.738 55.000 0.00 0.00 44.12 2.40
210 211 0.994995 CGACAGAGGTTGCGAAGATG 59.005 55.000 0.00 0.00 0.00 2.90
211 212 1.363744 GACAGAGGTTGCGAAGATGG 58.636 55.000 0.00 0.00 0.00 3.51
212 213 0.687354 ACAGAGGTTGCGAAGATGGT 59.313 50.000 0.00 0.00 0.00 3.55
213 214 1.081892 CAGAGGTTGCGAAGATGGTG 58.918 55.000 0.00 0.00 0.00 4.17
214 215 0.036010 AGAGGTTGCGAAGATGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
215 216 1.648467 GAGGTTGCGAAGATGGTGGC 61.648 60.000 0.00 0.00 0.00 5.01
216 217 1.675641 GGTTGCGAAGATGGTGGCT 60.676 57.895 0.00 0.00 0.00 4.75
217 218 1.244019 GGTTGCGAAGATGGTGGCTT 61.244 55.000 0.00 0.00 0.00 4.35
218 219 0.598065 GTTGCGAAGATGGTGGCTTT 59.402 50.000 0.00 0.00 0.00 3.51
219 220 0.597568 TTGCGAAGATGGTGGCTTTG 59.402 50.000 0.00 0.00 0.00 2.77
220 221 1.243342 TGCGAAGATGGTGGCTTTGG 61.243 55.000 0.00 0.00 0.00 3.28
221 222 1.244019 GCGAAGATGGTGGCTTTGGT 61.244 55.000 0.00 0.00 0.00 3.67
222 223 0.804989 CGAAGATGGTGGCTTTGGTC 59.195 55.000 0.00 0.00 0.00 4.02
223 224 1.611673 CGAAGATGGTGGCTTTGGTCT 60.612 52.381 0.00 0.00 0.00 3.85
224 225 2.519013 GAAGATGGTGGCTTTGGTCTT 58.481 47.619 0.00 0.00 0.00 3.01
225 226 3.686016 GAAGATGGTGGCTTTGGTCTTA 58.314 45.455 0.00 0.00 0.00 2.10
226 227 3.073274 AGATGGTGGCTTTGGTCTTAC 57.927 47.619 0.00 0.00 0.00 2.34
227 228 2.644798 AGATGGTGGCTTTGGTCTTACT 59.355 45.455 0.00 0.00 0.00 2.24
228 229 2.270352 TGGTGGCTTTGGTCTTACTG 57.730 50.000 0.00 0.00 0.00 2.74
229 230 1.493022 TGGTGGCTTTGGTCTTACTGT 59.507 47.619 0.00 0.00 0.00 3.55
230 231 2.092103 TGGTGGCTTTGGTCTTACTGTT 60.092 45.455 0.00 0.00 0.00 3.16
231 232 2.293399 GGTGGCTTTGGTCTTACTGTTG 59.707 50.000 0.00 0.00 0.00 3.33
232 233 2.949644 GTGGCTTTGGTCTTACTGTTGT 59.050 45.455 0.00 0.00 0.00 3.32
233 234 4.131596 GTGGCTTTGGTCTTACTGTTGTA 58.868 43.478 0.00 0.00 0.00 2.41
234 235 4.024302 GTGGCTTTGGTCTTACTGTTGTAC 60.024 45.833 0.00 0.00 0.00 2.90
235 236 3.185797 GGCTTTGGTCTTACTGTTGTACG 59.814 47.826 0.00 0.00 0.00 3.67
236 237 4.053295 GCTTTGGTCTTACTGTTGTACGA 58.947 43.478 0.00 0.00 0.00 3.43
237 238 4.084693 GCTTTGGTCTTACTGTTGTACGAC 60.085 45.833 6.27 6.27 43.16 4.34
238 239 4.924305 TTGGTCTTACTGTTGTACGACT 57.076 40.909 14.38 0.00 43.31 4.18
239 240 4.924305 TGGTCTTACTGTTGTACGACTT 57.076 40.909 14.38 4.26 43.31 3.01
240 241 5.266733 TGGTCTTACTGTTGTACGACTTT 57.733 39.130 14.38 3.93 43.31 2.66
241 242 5.045215 TGGTCTTACTGTTGTACGACTTTG 58.955 41.667 14.38 7.24 43.31 2.77
242 243 5.045872 GGTCTTACTGTTGTACGACTTTGT 58.954 41.667 14.38 12.01 43.31 2.83
243 244 6.183360 TGGTCTTACTGTTGTACGACTTTGTA 60.183 38.462 14.38 11.16 43.31 2.41
244 245 6.697019 GGTCTTACTGTTGTACGACTTTGTAA 59.303 38.462 14.38 16.43 43.31 2.41
245 246 7.096312 GGTCTTACTGTTGTACGACTTTGTAAG 60.096 40.741 26.64 26.64 43.31 2.34
246 247 6.919662 TCTTACTGTTGTACGACTTTGTAAGG 59.080 38.462 28.76 20.15 37.36 2.69
247 248 5.014808 ACTGTTGTACGACTTTGTAAGGT 57.985 39.130 14.38 0.00 0.00 3.50
248 249 5.422145 ACTGTTGTACGACTTTGTAAGGTT 58.578 37.500 14.38 0.00 0.00 3.50
249 250 5.876460 ACTGTTGTACGACTTTGTAAGGTTT 59.124 36.000 14.38 0.00 0.00 3.27
250 251 6.372381 ACTGTTGTACGACTTTGTAAGGTTTT 59.628 34.615 14.38 0.00 0.00 2.43
251 252 6.544622 TGTTGTACGACTTTGTAAGGTTTTG 58.455 36.000 14.38 0.00 0.00 2.44
252 253 6.149142 TGTTGTACGACTTTGTAAGGTTTTGT 59.851 34.615 14.38 0.00 0.00 2.83
253 254 6.109320 TGTACGACTTTGTAAGGTTTTGTG 57.891 37.500 0.00 0.00 0.00 3.33
254 255 4.023739 ACGACTTTGTAAGGTTTTGTGC 57.976 40.909 0.00 0.00 0.00 4.57
255 256 3.692593 ACGACTTTGTAAGGTTTTGTGCT 59.307 39.130 0.00 0.00 0.00 4.40
256 257 4.877251 ACGACTTTGTAAGGTTTTGTGCTA 59.123 37.500 0.00 0.00 0.00 3.49
257 258 5.354792 ACGACTTTGTAAGGTTTTGTGCTAA 59.645 36.000 0.00 0.00 0.00 3.09
258 259 6.038936 ACGACTTTGTAAGGTTTTGTGCTAAT 59.961 34.615 0.00 0.00 0.00 1.73
259 260 7.227116 ACGACTTTGTAAGGTTTTGTGCTAATA 59.773 33.333 0.00 0.00 0.00 0.98
260 261 8.071368 CGACTTTGTAAGGTTTTGTGCTAATAA 58.929 33.333 0.00 0.00 0.00 1.40
261 262 9.908152 GACTTTGTAAGGTTTTGTGCTAATAAT 57.092 29.630 0.00 0.00 0.00 1.28
274 275 9.810545 TTTGTGCTAATAATTAATAAAGTGGCC 57.189 29.630 0.00 0.00 0.00 5.36
275 276 7.644490 TGTGCTAATAATTAATAAAGTGGCCG 58.356 34.615 0.00 0.00 0.00 6.13
276 277 7.283580 TGTGCTAATAATTAATAAAGTGGCCGT 59.716 33.333 0.00 0.00 0.00 5.68
277 278 8.776470 GTGCTAATAATTAATAAAGTGGCCGTA 58.224 33.333 0.00 0.00 0.00 4.02
278 279 9.509956 TGCTAATAATTAATAAAGTGGCCGTAT 57.490 29.630 0.00 0.00 0.00 3.06
279 280 9.769093 GCTAATAATTAATAAAGTGGCCGTATG 57.231 33.333 0.00 0.00 0.00 2.39
280 281 9.769093 CTAATAATTAATAAAGTGGCCGTATGC 57.231 33.333 0.00 0.00 40.16 3.14
281 282 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
282 283 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
283 284 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
284 285 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
285 286 0.107897 AAAGTGGCCGTATGCATCGA 60.108 50.000 16.69 0.00 43.89 3.59
286 287 0.810031 AAGTGGCCGTATGCATCGAC 60.810 55.000 16.69 5.03 43.89 4.20
287 288 2.108157 TGGCCGTATGCATCGACC 59.892 61.111 16.69 15.28 43.89 4.79
288 289 2.108157 GGCCGTATGCATCGACCA 59.892 61.111 16.69 0.00 43.89 4.02
289 290 1.956170 GGCCGTATGCATCGACCAG 60.956 63.158 16.69 1.29 43.89 4.00
290 291 1.067416 GCCGTATGCATCGACCAGA 59.933 57.895 16.69 0.00 40.77 3.86
291 292 0.319900 GCCGTATGCATCGACCAGAT 60.320 55.000 16.69 0.00 41.01 2.90
299 300 1.445095 ATCGACCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
300 301 2.037620 ATCGACCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
301 302 2.202987 GACCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
302 303 3.746949 GACCAGATGCAGAGGCCGG 62.747 68.421 0.00 0.00 40.13 6.13
303 304 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
304 305 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
309 310 4.678743 GCAGAGGCCGGGGGTTTT 62.679 66.667 2.18 0.00 0.00 2.43
310 311 2.361230 CAGAGGCCGGGGGTTTTC 60.361 66.667 2.18 0.00 0.00 2.29
311 312 3.658422 AGAGGCCGGGGGTTTTCC 61.658 66.667 2.18 0.00 39.75 3.13
312 313 3.658422 GAGGCCGGGGGTTTTCCT 61.658 66.667 2.18 0.00 40.46 3.36
313 314 3.640257 GAGGCCGGGGGTTTTCCTC 62.640 68.421 2.18 4.76 40.44 3.71
321 322 2.281539 GGGGTTTTCCTCCTTTTCGA 57.718 50.000 0.00 0.00 40.46 3.71
322 323 2.589720 GGGGTTTTCCTCCTTTTCGAA 58.410 47.619 0.00 0.00 40.46 3.71
323 324 2.960384 GGGGTTTTCCTCCTTTTCGAAA 59.040 45.455 6.47 6.47 40.46 3.46
324 325 3.385433 GGGGTTTTCCTCCTTTTCGAAAA 59.615 43.478 21.35 21.35 40.46 2.29
325 326 4.141892 GGGGTTTTCCTCCTTTTCGAAAAA 60.142 41.667 22.67 9.49 37.27 1.94
354 355 2.632512 TCACTTTTTCTTCCAATGCCCC 59.367 45.455 0.00 0.00 0.00 5.80
358 359 4.165950 ACTTTTTCTTCCAATGCCCCTTTT 59.834 37.500 0.00 0.00 0.00 2.27
360 361 2.999185 TCTTCCAATGCCCCTTTTCT 57.001 45.000 0.00 0.00 0.00 2.52
384 385 3.928727 ATATGCTGGCAATATGTGTGC 57.071 42.857 0.00 0.00 41.45 4.57
411 412 0.463474 GGCATCCTCCACTCTCAAGC 60.463 60.000 0.00 0.00 0.00 4.01
450 451 3.879295 CTCAGCTCAAACAACTCCTCAAA 59.121 43.478 0.00 0.00 0.00 2.69
462 463 4.607293 ACTCCTCAAATTTCCTTTTGCC 57.393 40.909 0.00 0.00 36.69 4.52
488 499 5.150715 TGACTTATCTCATGGGCTATCTGT 58.849 41.667 0.00 0.00 0.00 3.41
490 501 6.435591 TGACTTATCTCATGGGCTATCTGTAG 59.564 42.308 0.00 0.00 0.00 2.74
492 503 6.210385 ACTTATCTCATGGGCTATCTGTAGTG 59.790 42.308 0.00 0.00 0.00 2.74
573 586 8.670521 AATTTAAGGAGGAAATGAAGTGGATT 57.329 30.769 0.00 0.00 0.00 3.01
575 588 9.942526 ATTTAAGGAGGAAATGAAGTGGATTAT 57.057 29.630 0.00 0.00 0.00 1.28
591 604 4.408921 TGGATTATATATCGGGCCAAGAGG 59.591 45.833 4.39 0.00 38.23 3.69
600 613 1.473434 CGGGCCAAGAGGAATGACTAC 60.473 57.143 4.39 0.00 36.89 2.73
607 620 5.629133 GCCAAGAGGAATGACTACAATGGTA 60.629 44.000 0.00 0.00 36.89 3.25
609 622 5.615925 AGAGGAATGACTACAATGGTACC 57.384 43.478 4.43 4.43 0.00 3.34
774 952 3.549625 GCAGAGTTTTGCTGTTTCTCTGG 60.550 47.826 17.93 4.84 46.73 3.86
775 953 3.004106 CAGAGTTTTGCTGTTTCTCTGGG 59.996 47.826 11.23 0.00 44.51 4.45
776 954 2.294512 GAGTTTTGCTGTTTCTCTGGGG 59.705 50.000 0.00 0.00 0.00 4.96
818 996 6.421801 AGCGTATTTTGTGACTACGTAAACTT 59.578 34.615 0.00 0.00 40.16 2.66
824 1002 6.578020 TTGTGACTACGTAAACTTGTGAAG 57.422 37.500 0.00 0.00 0.00 3.02
861 1048 2.228822 AGCACCACATTCCGAACAAATC 59.771 45.455 0.00 0.00 0.00 2.17
904 1093 6.423862 CAGGTTTGAAACTCAAATGCAAATG 58.576 36.000 8.09 0.00 46.55 2.32
1118 1307 3.458163 TGCGCCTTACTCCCTCGG 61.458 66.667 4.18 0.00 0.00 4.63
1243 1432 0.396811 CCTTCGTCAGGGACAAGGTT 59.603 55.000 14.24 0.00 39.39 3.50
1349 1539 1.833049 CCTCGCCCTACCCTACCAG 60.833 68.421 0.00 0.00 0.00 4.00
1502 1692 3.752222 ACTTATAGACGTCGGCTAGGATG 59.248 47.826 14.26 8.67 0.00 3.51
1523 1713 5.633830 TGCAATTCTGAGGTCATTTCTTC 57.366 39.130 0.00 0.00 0.00 2.87
1528 1718 8.465201 GCAATTCTGAGGTCATTTCTTCTTTAT 58.535 33.333 0.00 0.00 0.00 1.40
1551 1742 2.614057 CACACTGGACACTTCTTGGAAC 59.386 50.000 0.00 0.00 0.00 3.62
1584 1775 5.580691 GCCAATTCTATTTGTTTAAGCCCAC 59.419 40.000 0.00 0.00 0.00 4.61
1764 1955 8.843885 TCTCTGCTCCAATCAATCTATTTATG 57.156 34.615 0.00 0.00 0.00 1.90
1828 2019 5.531634 CATGCCATTGTGTTCTTTAACAGT 58.468 37.500 0.00 0.00 46.06 3.55
2059 2251 5.279456 GGCTAAGAATTGTTGGTTTGTGGAT 60.279 40.000 0.00 0.00 0.00 3.41
2120 2319 3.438360 CACTGTCTGCCTTTTGTTGTTC 58.562 45.455 0.00 0.00 0.00 3.18
2130 2329 4.154015 GCCTTTTGTTGTTCTTGCAAAGTT 59.846 37.500 0.00 0.00 46.34 2.66
2333 2533 6.090628 TGCAACCAATAATTTGATTCTTTCGC 59.909 34.615 0.00 0.00 34.60 4.70
2384 2585 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2479 2680 7.127012 TCCGTATGTAGTCCCAATTGAAATA 57.873 36.000 7.12 0.00 0.00 1.40
3074 3499 7.824779 AGAAGTAGTACAATCACCAAAAGGATC 59.175 37.037 2.52 0.00 0.00 3.36
3078 3503 7.259088 AGTACAATCACCAAAAGGATCTAGT 57.741 36.000 0.00 0.00 0.00 2.57
3082 3507 5.983333 ATCACCAAAAGGATCTAGTGGAT 57.017 39.130 10.81 0.00 37.37 3.41
3207 3632 0.388659 TGCCTTGTGCCATTGTTCAC 59.611 50.000 0.85 0.85 40.16 3.18
3284 3709 8.484214 TGAGTATTATACTTCTGCTTCATCCT 57.516 34.615 6.33 0.00 39.59 3.24
3299 3724 2.807967 TCATCCTGAGTTTCAAAGTGCG 59.192 45.455 0.00 0.00 0.00 5.34
3300 3725 0.944386 TCCTGAGTTTCAAAGTGCGC 59.056 50.000 0.00 0.00 0.00 6.09
3337 3762 9.078990 AGTCCGAGAATGTACATATTTGATCTA 57.921 33.333 9.21 0.00 0.00 1.98
3445 3871 0.325602 TTTGGCCCGGTAAGTACCAG 59.674 55.000 0.00 0.00 46.80 4.00
3692 4118 0.036105 GGGAAAAAGGCTGGCATTGG 60.036 55.000 3.38 0.00 0.00 3.16
3747 4173 5.608449 ACAAGTACCTCTGGTAAACAAGTC 58.392 41.667 0.00 0.00 40.12 3.01
3909 4337 3.985019 AAATGCCATTTGCCTGATTCA 57.015 38.095 0.97 0.00 40.16 2.57
3935 4363 8.621286 AGAAAATGTGCGGAGGTAATTAATTAG 58.379 33.333 8.18 0.00 0.00 1.73
4035 4470 6.634805 TGTCCTTCTCTTGATTGATGACTAC 58.365 40.000 0.00 0.00 0.00 2.73
4347 4782 1.093159 AGTAGCTTTGCATGCTCAGC 58.907 50.000 25.67 25.67 41.46 4.26
4423 4858 7.544915 AGTTTTACTTATCAAGTCTAAGCGTCC 59.455 37.037 0.00 0.00 41.77 4.79
4567 5002 2.022625 AGGGGATCTCATCAGAAGGTCA 60.023 50.000 0.00 0.00 30.24 4.02
4588 5023 9.099454 AGGTCATAATGATTTCTTTTCTCGTAC 57.901 33.333 0.00 0.00 0.00 3.67
4681 5119 6.132056 CAGCACAATATCTTAGTTTGCGATC 58.868 40.000 0.00 0.00 33.68 3.69
4682 5120 5.817296 AGCACAATATCTTAGTTTGCGATCA 59.183 36.000 0.00 0.00 33.68 2.92
4683 5121 6.484643 AGCACAATATCTTAGTTTGCGATCAT 59.515 34.615 0.00 0.00 33.68 2.45
5089 5527 1.071699 TCACAAAGTAGCACCCAGTCC 59.928 52.381 0.00 0.00 0.00 3.85
5125 5563 2.673368 CTCCGAGTCACAAAATAGCACC 59.327 50.000 0.00 0.00 0.00 5.01
5131 5569 2.488153 GTCACAAAATAGCACCCAGTCC 59.512 50.000 0.00 0.00 0.00 3.85
5357 5810 0.099968 CATGCTGGGCGTTTCAGATG 59.900 55.000 6.09 4.12 34.36 2.90
5362 5815 0.684535 TGGGCGTTTCAGATGACAGA 59.315 50.000 0.00 0.00 0.00 3.41
5425 5878 4.082523 CCGCCAGTCGTCCATGGT 62.083 66.667 12.58 0.00 38.91 3.55
5439 5892 1.452110 CATGGTGCTCGGATGTTCAA 58.548 50.000 0.00 0.00 0.00 2.69
5498 5951 0.682209 AGAAGCTGGCGCCATTGATT 60.682 50.000 32.87 24.56 36.60 2.57
5503 5956 0.813184 CTGGCGCCATTGATTTGTCT 59.187 50.000 32.87 0.00 0.00 3.41
5512 5965 4.704057 GCCATTGATTTGTCTTCTCCTTCT 59.296 41.667 0.00 0.00 0.00 2.85
5551 6004 2.738743 AGGAATGGTAACCATGGCAAG 58.261 47.619 13.04 0.00 44.40 4.01
6223 6686 1.007271 CGAGTTGAGCACCGACAGT 60.007 57.895 0.00 0.00 0.00 3.55
6265 6728 1.002069 TGATGAACCCCTGCTTCCAT 58.998 50.000 0.00 0.00 0.00 3.41
6525 7003 0.032678 ACGAGGGCGATGAAGCATAG 59.967 55.000 0.00 0.00 41.64 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.624364 CGTCACAGCCACCTGCCA 62.624 66.667 0.00 0.00 43.02 4.92
11 12 0.179100 CAGGTATGAGGCCGTCACAG 60.179 60.000 7.00 0.00 38.28 3.66
12 13 1.613317 CCAGGTATGAGGCCGTCACA 61.613 60.000 7.00 2.71 38.28 3.58
13 14 1.144057 CCAGGTATGAGGCCGTCAC 59.856 63.158 7.00 0.00 38.28 3.67
14 15 2.731571 GCCAGGTATGAGGCCGTCA 61.732 63.158 0.00 1.68 45.18 4.35
15 16 2.109181 GCCAGGTATGAGGCCGTC 59.891 66.667 0.00 0.00 45.18 4.79
20 21 4.609018 CGCCCGCCAGGTATGAGG 62.609 72.222 0.00 0.00 38.26 3.86
21 22 4.609018 CCGCCCGCCAGGTATGAG 62.609 72.222 0.00 0.00 38.26 2.90
37 38 4.115199 ATGCTCCTCAACCCGGCC 62.115 66.667 0.00 0.00 0.00 6.13
38 39 2.825836 CATGCTCCTCAACCCGGC 60.826 66.667 0.00 0.00 0.00 6.13
39 40 2.825836 GCATGCTCCTCAACCCGG 60.826 66.667 11.37 0.00 0.00 5.73
40 41 2.825836 GGCATGCTCCTCAACCCG 60.826 66.667 18.92 0.00 0.00 5.28
41 42 2.825836 CGGCATGCTCCTCAACCC 60.826 66.667 18.92 0.00 0.00 4.11
42 43 2.825836 CCGGCATGCTCCTCAACC 60.826 66.667 18.92 0.00 0.00 3.77
43 44 2.109126 GTCCGGCATGCTCCTCAAC 61.109 63.158 18.92 4.22 0.00 3.18
44 45 2.268920 GTCCGGCATGCTCCTCAA 59.731 61.111 18.92 0.00 0.00 3.02
45 46 2.685017 AGTCCGGCATGCTCCTCA 60.685 61.111 18.92 0.00 0.00 3.86
46 47 2.202987 CAGTCCGGCATGCTCCTC 60.203 66.667 18.92 6.52 0.00 3.71
47 48 3.790437 CCAGTCCGGCATGCTCCT 61.790 66.667 18.92 5.43 0.00 3.69
48 49 4.101448 ACCAGTCCGGCATGCTCC 62.101 66.667 18.92 0.00 39.03 4.70
49 50 2.821366 CACCAGTCCGGCATGCTC 60.821 66.667 18.92 6.88 39.03 4.26
50 51 4.415150 CCACCAGTCCGGCATGCT 62.415 66.667 18.92 0.00 39.03 3.79
52 53 4.033776 ACCCACCAGTCCGGCATG 62.034 66.667 0.00 0.00 39.03 4.06
53 54 4.033776 CACCCACCAGTCCGGCAT 62.034 66.667 0.00 0.00 39.03 4.40
72 73 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
73 74 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
82 83 3.636231 TCCCAACCTGGACGCCTG 61.636 66.667 0.00 0.00 40.96 4.85
83 84 3.637273 GTCCCAACCTGGACGCCT 61.637 66.667 0.00 0.00 44.98 5.52
99 100 4.949121 ACCTAACATCTAAGACCTGAGGT 58.051 43.478 2.41 2.41 39.44 3.85
100 101 5.941555 AACCTAACATCTAAGACCTGAGG 57.058 43.478 0.00 0.00 0.00 3.86
101 102 6.109359 CCAAACCTAACATCTAAGACCTGAG 58.891 44.000 0.00 0.00 0.00 3.35
102 103 5.570844 GCCAAACCTAACATCTAAGACCTGA 60.571 44.000 0.00 0.00 0.00 3.86
103 104 4.636206 GCCAAACCTAACATCTAAGACCTG 59.364 45.833 0.00 0.00 0.00 4.00
104 105 4.536489 AGCCAAACCTAACATCTAAGACCT 59.464 41.667 0.00 0.00 0.00 3.85
105 106 4.636206 CAGCCAAACCTAACATCTAAGACC 59.364 45.833 0.00 0.00 0.00 3.85
106 107 4.095036 GCAGCCAAACCTAACATCTAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
107 108 4.261801 GCAGCCAAACCTAACATCTAAGA 58.738 43.478 0.00 0.00 0.00 2.10
108 109 4.009675 TGCAGCCAAACCTAACATCTAAG 58.990 43.478 0.00 0.00 0.00 2.18
109 110 4.027674 TGCAGCCAAACCTAACATCTAA 57.972 40.909 0.00 0.00 0.00 2.10
110 111 3.712016 TGCAGCCAAACCTAACATCTA 57.288 42.857 0.00 0.00 0.00 1.98
111 112 2.584835 TGCAGCCAAACCTAACATCT 57.415 45.000 0.00 0.00 0.00 2.90
112 113 2.094545 CCTTGCAGCCAAACCTAACATC 60.095 50.000 0.00 0.00 0.00 3.06
113 114 1.895131 CCTTGCAGCCAAACCTAACAT 59.105 47.619 0.00 0.00 0.00 2.71
114 115 1.327303 CCTTGCAGCCAAACCTAACA 58.673 50.000 0.00 0.00 0.00 2.41
115 116 1.269723 GACCTTGCAGCCAAACCTAAC 59.730 52.381 0.00 0.00 0.00 2.34
116 117 1.144913 AGACCTTGCAGCCAAACCTAA 59.855 47.619 0.00 0.00 0.00 2.69
117 118 0.771127 AGACCTTGCAGCCAAACCTA 59.229 50.000 0.00 0.00 0.00 3.08
118 119 0.825010 CAGACCTTGCAGCCAAACCT 60.825 55.000 0.00 0.00 0.00 3.50
119 120 1.109323 ACAGACCTTGCAGCCAAACC 61.109 55.000 0.00 0.00 0.00 3.27
120 121 0.746659 AACAGACCTTGCAGCCAAAC 59.253 50.000 0.00 0.00 0.00 2.93
121 122 1.136695 CAAACAGACCTTGCAGCCAAA 59.863 47.619 0.00 0.00 0.00 3.28
122 123 0.746063 CAAACAGACCTTGCAGCCAA 59.254 50.000 0.00 0.00 0.00 4.52
123 124 1.108727 CCAAACAGACCTTGCAGCCA 61.109 55.000 0.00 0.00 0.00 4.75
124 125 1.109323 ACCAAACAGACCTTGCAGCC 61.109 55.000 0.00 0.00 0.00 4.85
125 126 1.604604 TACCAAACAGACCTTGCAGC 58.395 50.000 0.00 0.00 0.00 5.25
126 127 4.396166 CCTAATACCAAACAGACCTTGCAG 59.604 45.833 0.00 0.00 0.00 4.41
127 128 4.331968 CCTAATACCAAACAGACCTTGCA 58.668 43.478 0.00 0.00 0.00 4.08
128 129 3.128764 GCCTAATACCAAACAGACCTTGC 59.871 47.826 0.00 0.00 0.00 4.01
129 130 3.694566 GGCCTAATACCAAACAGACCTTG 59.305 47.826 0.00 0.00 0.00 3.61
130 131 3.308904 GGGCCTAATACCAAACAGACCTT 60.309 47.826 0.84 0.00 0.00 3.50
131 132 2.241430 GGGCCTAATACCAAACAGACCT 59.759 50.000 0.84 0.00 0.00 3.85
132 133 2.025699 TGGGCCTAATACCAAACAGACC 60.026 50.000 4.53 0.00 32.89 3.85
133 134 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
134 135 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
135 136 3.279434 GTCTGGGCCTAATACCAAACAG 58.721 50.000 4.53 0.00 36.09 3.16
136 137 2.025699 GGTCTGGGCCTAATACCAAACA 60.026 50.000 13.69 0.00 36.09 2.83
137 138 2.025699 TGGTCTGGGCCTAATACCAAAC 60.026 50.000 17.71 0.00 37.29 2.93
138 139 2.280103 TGGTCTGGGCCTAATACCAAA 58.720 47.619 17.71 0.00 37.29 3.28
139 140 1.974028 TGGTCTGGGCCTAATACCAA 58.026 50.000 17.71 4.93 37.29 3.67
140 141 2.054799 GATGGTCTGGGCCTAATACCA 58.945 52.381 21.02 21.02 43.93 3.25
141 142 2.039084 CTGATGGTCTGGGCCTAATACC 59.961 54.545 12.13 12.13 0.00 2.73
142 143 2.551071 GCTGATGGTCTGGGCCTAATAC 60.551 54.545 4.53 0.00 0.00 1.89
143 144 1.699634 GCTGATGGTCTGGGCCTAATA 59.300 52.381 4.53 0.00 0.00 0.98
144 145 0.475906 GCTGATGGTCTGGGCCTAAT 59.524 55.000 4.53 0.00 0.00 1.73
145 146 1.915228 GCTGATGGTCTGGGCCTAA 59.085 57.895 4.53 0.00 0.00 2.69
146 147 2.434843 CGCTGATGGTCTGGGCCTA 61.435 63.158 4.53 0.00 0.00 3.93
147 148 3.790437 CGCTGATGGTCTGGGCCT 61.790 66.667 4.53 0.00 0.00 5.19
150 151 4.864334 GGGCGCTGATGGTCTGGG 62.864 72.222 7.64 0.00 0.00 4.45
151 152 4.864334 GGGGCGCTGATGGTCTGG 62.864 72.222 7.64 0.00 0.00 3.86
152 153 3.335356 AAGGGGCGCTGATGGTCTG 62.335 63.158 7.64 0.00 0.00 3.51
153 154 3.011517 AAGGGGCGCTGATGGTCT 61.012 61.111 7.64 0.00 0.00 3.85
154 155 2.514824 GAAGGGGCGCTGATGGTC 60.515 66.667 7.64 0.00 0.00 4.02
155 156 2.615227 GATGAAGGGGCGCTGATGGT 62.615 60.000 7.64 0.00 0.00 3.55
156 157 1.895707 GATGAAGGGGCGCTGATGG 60.896 63.158 7.64 0.00 0.00 3.51
157 158 1.153107 TGATGAAGGGGCGCTGATG 60.153 57.895 7.64 0.00 0.00 3.07
158 159 1.147824 CTGATGAAGGGGCGCTGAT 59.852 57.895 7.64 0.00 0.00 2.90
159 160 1.841302 AACTGATGAAGGGGCGCTGA 61.841 55.000 7.64 0.00 0.00 4.26
160 161 0.107703 TAACTGATGAAGGGGCGCTG 60.108 55.000 7.64 0.00 0.00 5.18
161 162 0.179000 CTAACTGATGAAGGGGCGCT 59.821 55.000 7.64 0.00 0.00 5.92
162 163 0.178068 TCTAACTGATGAAGGGGCGC 59.822 55.000 0.00 0.00 0.00 6.53
163 164 2.918712 ATCTAACTGATGAAGGGGCG 57.081 50.000 0.00 0.00 33.43 6.13
164 165 3.904339 TCCTATCTAACTGATGAAGGGGC 59.096 47.826 0.00 0.00 33.64 5.80
165 166 5.151454 ACTCCTATCTAACTGATGAAGGGG 58.849 45.833 0.00 0.00 37.40 4.79
166 167 6.071616 GCTACTCCTATCTAACTGATGAAGGG 60.072 46.154 0.00 0.00 33.64 3.95
167 168 6.348950 CGCTACTCCTATCTAACTGATGAAGG 60.349 46.154 0.00 0.00 36.65 3.46
168 169 6.428465 TCGCTACTCCTATCTAACTGATGAAG 59.572 42.308 0.00 0.00 36.65 3.02
169 170 6.205076 GTCGCTACTCCTATCTAACTGATGAA 59.795 42.308 0.00 0.00 36.65 2.57
170 171 5.701750 GTCGCTACTCCTATCTAACTGATGA 59.298 44.000 0.00 0.00 36.65 2.92
171 172 5.470437 TGTCGCTACTCCTATCTAACTGATG 59.530 44.000 0.00 0.00 36.65 3.07
172 173 5.622180 TGTCGCTACTCCTATCTAACTGAT 58.378 41.667 0.00 0.00 39.11 2.90
173 174 5.032327 TGTCGCTACTCCTATCTAACTGA 57.968 43.478 0.00 0.00 0.00 3.41
174 175 5.057819 TCTGTCGCTACTCCTATCTAACTG 58.942 45.833 0.00 0.00 0.00 3.16
175 176 5.293319 TCTGTCGCTACTCCTATCTAACT 57.707 43.478 0.00 0.00 0.00 2.24
176 177 4.453136 CCTCTGTCGCTACTCCTATCTAAC 59.547 50.000 0.00 0.00 0.00 2.34
177 178 4.102838 ACCTCTGTCGCTACTCCTATCTAA 59.897 45.833 0.00 0.00 0.00 2.10
178 179 3.647113 ACCTCTGTCGCTACTCCTATCTA 59.353 47.826 0.00 0.00 0.00 1.98
179 180 2.440253 ACCTCTGTCGCTACTCCTATCT 59.560 50.000 0.00 0.00 0.00 1.98
180 181 2.853705 ACCTCTGTCGCTACTCCTATC 58.146 52.381 0.00 0.00 0.00 2.08
181 182 2.952978 CAACCTCTGTCGCTACTCCTAT 59.047 50.000 0.00 0.00 0.00 2.57
182 183 2.366533 CAACCTCTGTCGCTACTCCTA 58.633 52.381 0.00 0.00 0.00 2.94
183 184 1.178276 CAACCTCTGTCGCTACTCCT 58.822 55.000 0.00 0.00 0.00 3.69
184 185 0.458716 GCAACCTCTGTCGCTACTCC 60.459 60.000 0.00 0.00 0.00 3.85
185 186 0.798771 CGCAACCTCTGTCGCTACTC 60.799 60.000 0.00 0.00 0.00 2.59
186 187 1.213013 CGCAACCTCTGTCGCTACT 59.787 57.895 0.00 0.00 0.00 2.57
187 188 0.388134 TTCGCAACCTCTGTCGCTAC 60.388 55.000 0.00 0.00 0.00 3.58
188 189 0.109272 CTTCGCAACCTCTGTCGCTA 60.109 55.000 0.00 0.00 0.00 4.26
189 190 1.373497 CTTCGCAACCTCTGTCGCT 60.373 57.895 0.00 0.00 0.00 4.93
190 191 0.737715 ATCTTCGCAACCTCTGTCGC 60.738 55.000 0.00 0.00 0.00 5.19
191 192 0.994995 CATCTTCGCAACCTCTGTCG 59.005 55.000 0.00 0.00 0.00 4.35
192 193 1.338200 ACCATCTTCGCAACCTCTGTC 60.338 52.381 0.00 0.00 0.00 3.51
193 194 0.687354 ACCATCTTCGCAACCTCTGT 59.313 50.000 0.00 0.00 0.00 3.41
194 195 1.081892 CACCATCTTCGCAACCTCTG 58.918 55.000 0.00 0.00 0.00 3.35
195 196 0.036010 CCACCATCTTCGCAACCTCT 60.036 55.000 0.00 0.00 0.00 3.69
196 197 1.648467 GCCACCATCTTCGCAACCTC 61.648 60.000 0.00 0.00 0.00 3.85
197 198 1.675641 GCCACCATCTTCGCAACCT 60.676 57.895 0.00 0.00 0.00 3.50
198 199 1.244019 AAGCCACCATCTTCGCAACC 61.244 55.000 0.00 0.00 0.00 3.77
199 200 0.598065 AAAGCCACCATCTTCGCAAC 59.402 50.000 0.00 0.00 0.00 4.17
200 201 0.597568 CAAAGCCACCATCTTCGCAA 59.402 50.000 0.00 0.00 0.00 4.85
201 202 1.243342 CCAAAGCCACCATCTTCGCA 61.243 55.000 0.00 0.00 0.00 5.10
202 203 1.244019 ACCAAAGCCACCATCTTCGC 61.244 55.000 0.00 0.00 0.00 4.70
203 204 0.804989 GACCAAAGCCACCATCTTCG 59.195 55.000 0.00 0.00 0.00 3.79
204 205 2.206576 AGACCAAAGCCACCATCTTC 57.793 50.000 0.00 0.00 0.00 2.87
205 206 2.683211 AAGACCAAAGCCACCATCTT 57.317 45.000 0.00 0.00 0.00 2.40
206 207 2.644798 AGTAAGACCAAAGCCACCATCT 59.355 45.455 0.00 0.00 0.00 2.90
207 208 2.749621 CAGTAAGACCAAAGCCACCATC 59.250 50.000 0.00 0.00 0.00 3.51
208 209 2.108250 ACAGTAAGACCAAAGCCACCAT 59.892 45.455 0.00 0.00 0.00 3.55
209 210 1.493022 ACAGTAAGACCAAAGCCACCA 59.507 47.619 0.00 0.00 0.00 4.17
210 211 2.271944 ACAGTAAGACCAAAGCCACC 57.728 50.000 0.00 0.00 0.00 4.61
211 212 2.949644 ACAACAGTAAGACCAAAGCCAC 59.050 45.455 0.00 0.00 0.00 5.01
212 213 3.290948 ACAACAGTAAGACCAAAGCCA 57.709 42.857 0.00 0.00 0.00 4.75
213 214 3.185797 CGTACAACAGTAAGACCAAAGCC 59.814 47.826 0.00 0.00 0.00 4.35
214 215 4.053295 TCGTACAACAGTAAGACCAAAGC 58.947 43.478 0.00 0.00 0.00 3.51
215 216 5.287226 AGTCGTACAACAGTAAGACCAAAG 58.713 41.667 14.87 0.00 43.63 2.77
216 217 5.266733 AGTCGTACAACAGTAAGACCAAA 57.733 39.130 14.87 0.00 43.63 3.28
217 218 4.924305 AGTCGTACAACAGTAAGACCAA 57.076 40.909 14.87 0.00 43.63 3.67
218 219 4.924305 AAGTCGTACAACAGTAAGACCA 57.076 40.909 14.87 0.00 43.63 4.02
219 220 5.045872 ACAAAGTCGTACAACAGTAAGACC 58.954 41.667 14.87 2.34 43.63 3.85
220 221 7.096312 CCTTACAAAGTCGTACAACAGTAAGAC 60.096 40.741 17.98 11.88 43.23 3.01
221 222 6.919662 CCTTACAAAGTCGTACAACAGTAAGA 59.080 38.462 17.98 0.00 39.45 2.10
222 223 6.698766 ACCTTACAAAGTCGTACAACAGTAAG 59.301 38.462 12.97 12.97 37.80 2.34
223 224 6.572519 ACCTTACAAAGTCGTACAACAGTAA 58.427 36.000 0.00 0.00 0.00 2.24
224 225 6.147864 ACCTTACAAAGTCGTACAACAGTA 57.852 37.500 0.00 0.00 0.00 2.74
225 226 5.014808 ACCTTACAAAGTCGTACAACAGT 57.985 39.130 0.00 0.00 0.00 3.55
226 227 5.978934 AACCTTACAAAGTCGTACAACAG 57.021 39.130 0.00 0.00 0.00 3.16
227 228 6.149142 ACAAAACCTTACAAAGTCGTACAACA 59.851 34.615 0.00 0.00 0.00 3.33
228 229 6.466730 CACAAAACCTTACAAAGTCGTACAAC 59.533 38.462 0.00 0.00 0.00 3.32
229 230 6.544622 CACAAAACCTTACAAAGTCGTACAA 58.455 36.000 0.00 0.00 0.00 2.41
230 231 5.447548 GCACAAAACCTTACAAAGTCGTACA 60.448 40.000 0.00 0.00 0.00 2.90
231 232 4.965762 GCACAAAACCTTACAAAGTCGTAC 59.034 41.667 0.00 0.00 0.00 3.67
232 233 4.877251 AGCACAAAACCTTACAAAGTCGTA 59.123 37.500 0.00 0.00 0.00 3.43
233 234 3.692593 AGCACAAAACCTTACAAAGTCGT 59.307 39.130 0.00 0.00 0.00 4.34
234 235 4.287238 AGCACAAAACCTTACAAAGTCG 57.713 40.909 0.00 0.00 0.00 4.18
235 236 9.908152 ATTATTAGCACAAAACCTTACAAAGTC 57.092 29.630 0.00 0.00 0.00 3.01
248 249 9.810545 GGCCACTTTATTAATTATTAGCACAAA 57.189 29.630 0.00 0.00 0.00 2.83
249 250 8.132362 CGGCCACTTTATTAATTATTAGCACAA 58.868 33.333 2.24 0.00 0.00 3.33
250 251 7.283580 ACGGCCACTTTATTAATTATTAGCACA 59.716 33.333 2.24 0.00 0.00 4.57
251 252 7.645402 ACGGCCACTTTATTAATTATTAGCAC 58.355 34.615 2.24 0.00 0.00 4.40
252 253 7.811117 ACGGCCACTTTATTAATTATTAGCA 57.189 32.000 2.24 0.00 0.00 3.49
253 254 9.769093 CATACGGCCACTTTATTAATTATTAGC 57.231 33.333 2.24 0.00 0.00 3.09
254 255 9.769093 GCATACGGCCACTTTATTAATTATTAG 57.231 33.333 2.24 0.00 36.11 1.73
255 256 9.286170 TGCATACGGCCACTTTATTAATTATTA 57.714 29.630 2.24 0.00 43.89 0.98
256 257 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
257 258 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
258 259 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
259 260 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
260 261 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
261 262 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
262 263 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
263 264 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
264 265 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
265 266 1.137282 TCGATGCATACGGCCACTTTA 59.863 47.619 2.24 0.00 43.89 1.85
266 267 0.107897 TCGATGCATACGGCCACTTT 60.108 50.000 2.24 0.00 43.89 2.66
267 268 0.810031 GTCGATGCATACGGCCACTT 60.810 55.000 2.24 0.00 43.89 3.16
268 269 1.227263 GTCGATGCATACGGCCACT 60.227 57.895 2.24 0.00 43.89 4.00
269 270 3.319904 GTCGATGCATACGGCCAC 58.680 61.111 2.24 6.11 43.89 5.01
272 273 0.319900 ATCTGGTCGATGCATACGGC 60.320 55.000 15.33 14.05 45.13 5.68
273 274 1.422388 CATCTGGTCGATGCATACGG 58.578 55.000 15.33 5.89 42.75 4.02
281 282 1.445095 GCCTCTGCATCTGGTCGAT 59.555 57.895 0.00 0.00 37.47 3.59
282 283 2.725312 GGCCTCTGCATCTGGTCGA 61.725 63.158 0.00 0.00 40.13 4.20
283 284 2.202987 GGCCTCTGCATCTGGTCG 60.203 66.667 0.00 0.00 40.13 4.79
284 285 2.202987 CGGCCTCTGCATCTGGTC 60.203 66.667 0.00 0.00 40.13 4.02
285 286 3.790437 CCGGCCTCTGCATCTGGT 61.790 66.667 0.00 0.00 40.13 4.00
286 287 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
287 288 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
292 293 4.678743 AAAACCCCCGGCCTCTGC 62.679 66.667 0.00 0.00 0.00 4.26
293 294 2.361230 GAAAACCCCCGGCCTCTG 60.361 66.667 0.00 0.00 0.00 3.35
294 295 3.658422 GGAAAACCCCCGGCCTCT 61.658 66.667 0.00 0.00 0.00 3.69
295 296 3.640257 GAGGAAAACCCCCGGCCTC 62.640 68.421 0.00 6.31 38.45 4.70
296 297 3.658422 GAGGAAAACCCCCGGCCT 61.658 66.667 0.00 0.00 34.66 5.19
297 298 4.753662 GGAGGAAAACCCCCGGCC 62.754 72.222 0.00 0.00 34.66 6.13
298 299 2.725127 AAAGGAGGAAAACCCCCGGC 62.725 60.000 0.00 0.00 34.66 6.13
299 300 0.178944 AAAAGGAGGAAAACCCCCGG 60.179 55.000 0.00 0.00 34.66 5.73
300 301 1.254026 GAAAAGGAGGAAAACCCCCG 58.746 55.000 0.00 0.00 34.66 5.73
301 302 1.202964 TCGAAAAGGAGGAAAACCCCC 60.203 52.381 0.00 0.00 34.66 5.40
302 303 2.281539 TCGAAAAGGAGGAAAACCCC 57.718 50.000 0.00 0.00 34.66 4.95
303 304 4.659111 TTTTCGAAAAGGAGGAAAACCC 57.341 40.909 19.08 0.00 35.43 4.11
325 326 7.654923 GCATTGGAAGAAAAAGTGATCTCTTTT 59.345 33.333 23.36 23.36 45.66 2.27
326 327 7.150640 GCATTGGAAGAAAAAGTGATCTCTTT 58.849 34.615 15.34 15.34 39.00 2.52
337 338 4.411869 AGAAAAGGGGCATTGGAAGAAAAA 59.588 37.500 0.00 0.00 0.00 1.94
345 346 3.986996 ATTTGAGAAAAGGGGCATTGG 57.013 42.857 0.00 0.00 0.00 3.16
354 355 7.924412 ACATATTGCCAGCATATTTGAGAAAAG 59.076 33.333 0.00 0.00 0.00 2.27
358 359 5.829391 ACACATATTGCCAGCATATTTGAGA 59.171 36.000 0.00 0.00 0.00 3.27
360 361 5.736777 GCACACATATTGCCAGCATATTTGA 60.737 40.000 0.00 0.00 33.58 2.69
384 385 2.080536 TGGAGGATGCCATGAGGGG 61.081 63.158 0.00 0.00 37.04 4.79
385 386 1.150081 GTGGAGGATGCCATGAGGG 59.850 63.158 0.00 0.00 40.68 4.30
399 400 4.467438 TCATCTTGTATGCTTGAGAGTGGA 59.533 41.667 0.00 0.00 0.00 4.02
400 401 4.763073 TCATCTTGTATGCTTGAGAGTGG 58.237 43.478 0.00 0.00 0.00 4.00
411 412 4.634883 AGCTGAGCAACTTCATCTTGTATG 59.365 41.667 7.39 0.00 0.00 2.39
450 451 6.019108 AGATAAGTCAAGGGCAAAAGGAAAT 58.981 36.000 0.00 0.00 0.00 2.17
462 463 3.853355 AGCCCATGAGATAAGTCAAGG 57.147 47.619 0.00 0.00 35.46 3.61
505 516 6.753744 GCTTGGTGAAATGCCTTTAAAGATAG 59.246 38.462 16.98 1.27 0.00 2.08
510 521 4.953940 AGCTTGGTGAAATGCCTTTAAA 57.046 36.364 0.00 0.00 0.00 1.52
573 586 5.128827 GTCATTCCTCTTGGCCCGATATATA 59.871 44.000 0.00 0.00 0.00 0.86
575 588 3.260884 GTCATTCCTCTTGGCCCGATATA 59.739 47.826 0.00 0.00 0.00 0.86
591 604 3.869246 CCGTGGTACCATTGTAGTCATTC 59.131 47.826 19.72 0.00 0.00 2.67
600 613 1.132262 GCATTGACCGTGGTACCATTG 59.868 52.381 19.72 14.60 0.00 2.82
607 620 1.202758 TCTGAAAGCATTGACCGTGGT 60.203 47.619 0.00 0.00 0.00 4.16
609 622 2.807967 TCTTCTGAAAGCATTGACCGTG 59.192 45.455 0.00 0.00 32.18 4.94
790 968 8.375465 GTTTACGTAGTCACAAAATACGCTTAT 58.625 33.333 5.13 0.00 44.59 1.73
818 996 4.981812 TCTATAGATACGCCTCCTTCACA 58.018 43.478 0.00 0.00 0.00 3.58
824 1002 2.424246 GGTGCTCTATAGATACGCCTCC 59.576 54.545 20.53 13.93 31.67 4.30
861 1048 2.281761 AAGCGGCTGTTCTGGGTG 60.282 61.111 1.81 0.00 0.00 4.61
1243 1432 3.326880 GGTGGAAGAGGTTCTTGAGGTAA 59.673 47.826 0.00 0.00 36.73 2.85
1349 1539 2.340443 GGGGATCCGACGATCTGC 59.660 66.667 5.45 0.00 43.90 4.26
1502 1692 5.893897 AGAAGAAATGACCTCAGAATTGC 57.106 39.130 0.00 0.00 0.00 3.56
1528 1718 1.140852 CCAAGAAGTGTCCAGTGTGGA 59.859 52.381 0.00 0.00 45.98 4.02
1551 1742 5.597806 ACAAATAGAATTGGCTGCATCATG 58.402 37.500 0.50 0.00 34.56 3.07
1584 1775 4.456911 TCAGCCTAAAGTGAATCAAGCAAG 59.543 41.667 0.00 0.00 0.00 4.01
1828 2019 0.319900 GTGCTTCTGCTTCCTCGACA 60.320 55.000 0.00 0.00 40.48 4.35
1953 2144 5.559770 TCTGAATCTGATGTAAAACAGCCA 58.440 37.500 0.00 0.00 32.69 4.75
2080 2272 9.289782 AGACAGTGCAATATAAGTTTTCTTTCT 57.710 29.630 0.00 0.00 40.91 2.52
2120 2319 2.097466 ACGAACAGGACAACTTTGCAAG 59.903 45.455 0.00 0.00 0.00 4.01
2130 2329 4.325028 TTTAAGCTACACGAACAGGACA 57.675 40.909 0.00 0.00 0.00 4.02
2384 2585 7.814587 CGCATGTAGTCCATATTGAAATCTCTA 59.185 37.037 0.00 0.00 30.71 2.43
2408 2609 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
2457 2658 8.601845 TGATATTTCAATTGGGACTACATACG 57.398 34.615 5.42 0.00 0.00 3.06
2485 2686 9.392259 CCCTCCGTTTCTAAATATTAAGTCTTT 57.608 33.333 0.00 0.00 0.00 2.52
2493 2694 7.909485 TCTACTCCCTCCGTTTCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
3049 3474 7.824779 AGATCCTTTTGGTGATTGTACTACTTC 59.175 37.037 0.00 0.00 41.38 3.01
3078 3503 7.453126 AGGTCACAATTTTATTTGGTACATCCA 59.547 33.333 0.00 0.00 45.60 3.41
3082 3507 8.696374 TCAAAGGTCACAATTTTATTTGGTACA 58.304 29.630 0.00 0.00 0.00 2.90
3129 3554 3.339253 ACTGATGCATGCTAGTTCACA 57.661 42.857 20.33 7.39 0.00 3.58
3207 3632 5.180117 GCAGGTAGCATCATAGTATTGTTGG 59.820 44.000 0.00 0.00 44.79 3.77
3284 3709 0.465460 AGGGCGCACTTTGAAACTCA 60.465 50.000 6.19 0.00 0.00 3.41
3299 3724 2.652590 TCTCGGACTAGAAACTAGGGC 58.347 52.381 0.00 2.72 0.00 5.19
3300 3725 4.645588 ACATTCTCGGACTAGAAACTAGGG 59.354 45.833 0.00 0.82 38.90 3.53
3337 3762 4.773149 AGAGTTAGAACCAGGTCGAGAAAT 59.227 41.667 0.00 0.00 0.00 2.17
3445 3871 8.131731 GCAGTCCAAAAATAGAAACTATCCATC 58.868 37.037 0.00 0.00 0.00 3.51
3573 3999 1.818642 GACATGCTGCTTCCTGAAGT 58.181 50.000 8.57 0.00 40.45 3.01
3692 4118 1.205893 TGTCACCACCCTTGTTTTTGC 59.794 47.619 0.00 0.00 0.00 3.68
3747 4173 5.698545 GCATAGCCACAGAAATAGAGTAAGG 59.301 44.000 0.00 0.00 0.00 2.69
3849 4277 6.978343 TTTATTACCTCACGGAATTGACTG 57.022 37.500 0.00 0.00 0.00 3.51
3850 4278 6.038271 GCATTTATTACCTCACGGAATTGACT 59.962 38.462 0.00 0.00 0.00 3.41
3873 4301 3.322211 CATTTTGGCTCCAGAAATGCA 57.678 42.857 16.14 0.00 34.98 3.96
3909 4337 7.404671 AATTAATTACCTCCGCACATTTTCT 57.595 32.000 0.00 0.00 0.00 2.52
4035 4470 6.703607 CAGCATACCCTATAGACAGAAAACAG 59.296 42.308 0.00 0.00 0.00 3.16
4073 4508 2.738846 CTGTTGGAACTCTGAATGACGG 59.261 50.000 0.00 0.00 0.00 4.79
4143 4578 8.988060 TCAATCCAGACATAACAGGTTAAGATA 58.012 33.333 1.85 0.00 0.00 1.98
4423 4858 5.345702 CATGGTACTGGAATCTGCAAATTG 58.654 41.667 0.00 0.00 0.00 2.32
4588 5023 4.274459 GTGTTTGGCTATTGCAGGATAGAG 59.726 45.833 9.21 0.00 41.91 2.43
4753 5191 7.341769 TCTTCATCCTTCTTTTCCAAAAACTCA 59.658 33.333 0.00 0.00 0.00 3.41
4873 5311 2.792290 CGTGGCGCATTCAGACTCG 61.792 63.158 10.83 0.00 0.00 4.18
5089 5527 1.144565 CGGAGTTCTGAGCATCGCTG 61.145 60.000 0.00 0.00 39.88 5.18
5125 5563 1.521010 CTGAGCATCGCTGGACTGG 60.521 63.158 0.00 0.00 39.88 4.00
5131 5569 1.279152 CAGAGTTCTGAGCATCGCTG 58.721 55.000 2.97 0.00 46.59 5.18
5357 5810 0.308993 GCACCAGCTTTGTGTCTGTC 59.691 55.000 13.22 0.00 37.91 3.51
5362 5815 1.438814 GCTTGCACCAGCTTTGTGT 59.561 52.632 13.22 0.00 42.74 3.72
5385 5838 3.114616 CTTCGACTGGTGCGCAGG 61.115 66.667 12.22 6.90 0.00 4.85
5386 5839 3.782244 GCTTCGACTGGTGCGCAG 61.782 66.667 12.22 0.60 0.00 5.18
5389 5842 3.084579 GATGCTTCGACTGGTGCG 58.915 61.111 0.00 0.00 0.00 5.34
5410 5863 3.127533 GCACCATGGACGACTGGC 61.128 66.667 21.47 6.25 35.88 4.85
5417 5870 0.392998 AACATCCGAGCACCATGGAC 60.393 55.000 21.47 10.28 33.91 4.02
5425 5878 1.031571 GGCCATTGAACATCCGAGCA 61.032 55.000 0.00 0.00 0.00 4.26
5439 5892 1.758280 TCGGTACATTACTTCGGCCAT 59.242 47.619 2.24 0.00 0.00 4.40
5498 5951 2.011122 ACCGGAGAAGGAGAAGACAA 57.989 50.000 9.46 0.00 34.73 3.18
5503 5956 0.601558 CGACAACCGGAGAAGGAGAA 59.398 55.000 9.46 0.00 34.73 2.87
5512 5965 0.824595 TTCTCCTGTCGACAACCGGA 60.825 55.000 20.49 20.37 38.79 5.14
5551 6004 5.762218 AGCTTCACTAATGTCTATTGCATCC 59.238 40.000 0.00 0.00 0.00 3.51
5836 6296 1.445066 CGTCATGCTCGTCTGCACT 60.445 57.895 3.09 0.00 46.33 4.40
6265 6728 2.421314 CACATATCGCGGGAGGCA 59.579 61.111 6.13 0.00 43.84 4.75
6431 6897 3.202829 AGGAAACAACAGCCGTTCTTA 57.797 42.857 0.00 0.00 31.13 2.10
6512 6990 2.320587 CCGCCCTATGCTTCATCGC 61.321 63.158 0.00 0.00 38.05 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.