Multiple sequence alignment - TraesCS7B01G229000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G229000 chr7B 100.000 5905 0 0 1 5905 429196105 429190201 0.000000e+00 10905.0
1 TraesCS7B01G229000 chr7B 100.000 1453 0 0 6209 7661 429189897 429188445 0.000000e+00 2684.0
2 TraesCS7B01G229000 chr7B 84.642 866 121 10 1564 2418 153750645 153749781 0.000000e+00 852.0
3 TraesCS7B01G229000 chr7B 81.504 665 82 25 2417 3057 153749678 153749031 6.860000e-140 508.0
4 TraesCS7B01G229000 chr7B 93.137 204 12 2 427 629 264057955 264057753 1.620000e-76 298.0
5 TraesCS7B01G229000 chr7B 89.796 98 6 4 4685 4780 680523740 680523645 1.040000e-23 122.0
6 TraesCS7B01G229000 chr7D 96.223 2992 77 13 2906 5888 415436368 415433404 0.000000e+00 4867.0
7 TraesCS7B01G229000 chr7D 95.255 1686 61 8 1021 2696 415438056 415436380 0.000000e+00 2652.0
8 TraesCS7B01G229000 chr7D 96.286 1454 28 10 6213 7661 415432986 415431554 0.000000e+00 2362.0
9 TraesCS7B01G229000 chr7D 90.598 351 24 8 811 1157 415438357 415438012 2.520000e-124 457.0
10 TraesCS7B01G229000 chr7D 83.621 232 32 5 1 227 415438676 415438446 6.020000e-51 213.0
11 TraesCS7B01G229000 chr7D 83.163 196 26 7 3929 4120 601486821 601486629 1.020000e-38 172.0
12 TraesCS7B01G229000 chr7D 86.614 127 16 1 1 126 141225489 141225615 1.040000e-28 139.0
13 TraesCS7B01G229000 chr7D 88.506 87 8 2 214 299 199400887 199400972 3.780000e-18 104.0
14 TraesCS7B01G229000 chr7D 84.810 79 11 1 130 208 71910596 71910673 2.290000e-10 78.7
15 TraesCS7B01G229000 chr7D 84.932 73 10 1 130 202 528042094 528042023 1.070000e-08 73.1
16 TraesCS7B01G229000 chr7A 95.205 2002 64 9 850 2827 477236924 477234931 0.000000e+00 3136.0
17 TraesCS7B01G229000 chr7A 96.120 1572 44 6 3956 5524 477233274 477231717 0.000000e+00 2549.0
18 TraesCS7B01G229000 chr7A 96.851 1461 32 7 6210 7661 477224242 477222787 0.000000e+00 2431.0
19 TraesCS7B01G229000 chr7A 96.549 1130 34 5 2843 3968 477234813 477233685 0.000000e+00 1866.0
20 TraesCS7B01G229000 chr7A 97.209 215 5 1 5521 5734 477224599 477224385 5.650000e-96 363.0
21 TraesCS7B01G229000 chr7A 92.788 208 10 4 423 629 562323920 562323717 5.810000e-76 296.0
22 TraesCS7B01G229000 chr7A 91.905 210 14 3 421 629 202508473 202508266 2.700000e-74 291.0
23 TraesCS7B01G229000 chr7A 96.403 139 5 0 640 778 501074671 501074809 5.980000e-56 230.0
24 TraesCS7B01G229000 chr7A 96.324 136 5 0 640 775 409866208 409866073 2.780000e-54 224.0
25 TraesCS7B01G229000 chr7A 95.683 139 6 0 641 779 596743035 596742897 2.780000e-54 224.0
26 TraesCS7B01G229000 chr7A 98.198 111 2 0 5795 5905 477224388 477224278 2.180000e-45 195.0
27 TraesCS7B01G229000 chr7A 80.952 231 27 13 1 227 477237763 477237546 4.760000e-37 167.0
28 TraesCS7B01G229000 chr7A 100.000 28 0 0 2826 2853 477234849 477234822 1.400000e-02 52.8
29 TraesCS7B01G229000 chr6D 90.547 603 40 11 1745 2345 417647027 417646440 0.000000e+00 782.0
30 TraesCS7B01G229000 chr6D 86.869 99 10 1 4683 4781 96747799 96747894 2.920000e-19 108.0
31 TraesCS7B01G229000 chr6B 88.663 344 24 4 1762 2104 626378298 626377969 9.260000e-109 405.0
32 TraesCS7B01G229000 chr6B 85.321 109 14 1 3 111 56987616 56987510 2.260000e-20 111.0
33 TraesCS7B01G229000 chr6B 81.308 107 17 2 5 111 720196951 720196848 4.930000e-12 84.2
34 TraesCS7B01G229000 chr2D 93.627 204 13 0 426 629 586967373 586967576 9.660000e-79 305.0
35 TraesCS7B01G229000 chr2D 91.228 171 10 5 3959 4127 153804785 153804618 2.150000e-55 228.0
36 TraesCS7B01G229000 chr2D 87.500 48 5 1 138 185 332514312 332514266 4.000000e-03 54.7
37 TraesCS7B01G229000 chr1A 94.089 203 9 3 428 629 471271556 471271756 9.660000e-79 305.0
38 TraesCS7B01G229000 chr1A 95.683 139 6 0 640 778 311814215 311814077 2.780000e-54 224.0
39 TraesCS7B01G229000 chr1A 82.258 124 17 3 8 126 546796230 546796107 1.360000e-17 102.0
40 TraesCS7B01G229000 chr1A 94.595 37 2 0 130 166 481707020 481706984 2.990000e-04 58.4
41 TraesCS7B01G229000 chr1D 92.683 205 13 2 426 629 225049356 225049153 2.090000e-75 294.0
42 TraesCS7B01G229000 chr1D 92.683 205 13 2 426 629 225049964 225049761 2.090000e-75 294.0
43 TraesCS7B01G229000 chr1D 86.829 205 18 8 3928 4127 452644326 452644526 3.600000e-53 220.0
44 TraesCS7B01G229000 chr1D 83.721 129 14 5 3 125 451979978 451979851 1.750000e-21 115.0
45 TraesCS7B01G229000 chr1D 84.615 104 12 3 214 316 465882529 465882629 4.890000e-17 100.0
46 TraesCS7B01G229000 chr1D 83.333 78 13 0 130 207 463120356 463120279 1.070000e-08 73.1
47 TraesCS7B01G229000 chr5D 92.647 204 13 2 427 629 423865995 423866197 7.520000e-75 292.0
48 TraesCS7B01G229000 chr5D 85.000 80 11 1 130 209 474473664 474473742 6.370000e-11 80.5
49 TraesCS7B01G229000 chrUn 92.271 207 12 4 427 631 75326253 75326049 2.700000e-74 291.0
50 TraesCS7B01G229000 chr2A 90.256 195 9 6 3935 4127 640274387 640274201 5.940000e-61 246.0
51 TraesCS7B01G229000 chr2A 93.793 145 7 2 634 778 244060609 244060751 4.660000e-52 217.0
52 TraesCS7B01G229000 chr2A 92.308 104 7 1 4674 4777 535152440 535152542 6.190000e-31 147.0
53 TraesCS7B01G229000 chr2A 87.156 109 12 1 3 111 515503757 515503651 1.040000e-23 122.0
54 TraesCS7B01G229000 chr5A 98.462 130 2 0 644 773 569702112 569701983 5.980000e-56 230.0
55 TraesCS7B01G229000 chr5A 96.377 138 4 1 637 774 81476819 81476683 7.740000e-55 226.0
56 TraesCS7B01G229000 chr5A 95.105 143 6 1 641 782 145678470 145678328 2.780000e-54 224.0
57 TraesCS7B01G229000 chr5A 90.566 106 10 0 4676 4781 681286286 681286391 2.880000e-29 141.0
58 TraesCS7B01G229000 chr5A 86.139 101 12 2 214 313 670192969 670193068 2.920000e-19 108.0
59 TraesCS7B01G229000 chr3D 87.440 207 14 11 3928 4127 464051077 464051278 2.150000e-55 228.0
60 TraesCS7B01G229000 chr4A 89.189 185 14 6 3946 4127 75927221 75927040 7.740000e-55 226.0
61 TraesCS7B01G229000 chr3A 95.714 140 5 1 634 773 17261535 17261673 2.780000e-54 224.0
62 TraesCS7B01G229000 chr3A 81.250 80 13 2 136 214 574008670 574008748 6.420000e-06 63.9
63 TraesCS7B01G229000 chr4D 91.509 106 9 0 4676 4781 500440024 500440129 6.190000e-31 147.0
64 TraesCS7B01G229000 chr4D 89.320 103 8 2 4684 4785 379505557 379505457 8.070000e-25 126.0
65 TraesCS7B01G229000 chr2B 79.808 208 26 14 3929 4127 754491257 754491457 3.730000e-28 137.0
66 TraesCS7B01G229000 chr3B 85.156 128 12 7 4667 4790 74281849 74281973 2.900000e-24 124.0
67 TraesCS7B01G229000 chr5B 83.465 127 18 2 3 126 9525575 9525449 1.750000e-21 115.0
68 TraesCS7B01G229000 chr1B 79.845 129 21 3 3 126 621985683 621985555 1.060000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G229000 chr7B 429188445 429196105 7660 True 6794.500000 10905 100.000000 1 7661 2 chr7B.!!$R4 7660
1 TraesCS7B01G229000 chr7B 153749031 153750645 1614 True 680.000000 852 83.073000 1564 3057 2 chr7B.!!$R3 1493
2 TraesCS7B01G229000 chr7D 415431554 415438676 7122 True 2110.200000 4867 92.396600 1 7661 5 chr7D.!!$R3 7660
3 TraesCS7B01G229000 chr7A 477231717 477237763 6046 True 1554.160000 3136 93.765200 1 5524 5 chr7A.!!$R6 5523
4 TraesCS7B01G229000 chr7A 477222787 477224599 1812 True 996.333333 2431 97.419333 5521 7661 3 chr7A.!!$R5 2140
5 TraesCS7B01G229000 chr6D 417646440 417647027 587 True 782.000000 782 90.547000 1745 2345 1 chr6D.!!$R1 600
6 TraesCS7B01G229000 chr1D 225049153 225049964 811 True 294.000000 294 92.683000 426 629 2 chr1D.!!$R3 203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 399 0.327924 AATCCGTGGCCTCACATCAA 59.672 50.000 3.32 0.00 43.79 2.57 F
1469 1933 0.109342 CTGTCCACTTCCTGGTTGCT 59.891 55.000 0.00 0.00 41.52 3.91 F
1470 1934 0.179020 TGTCCACTTCCTGGTTGCTG 60.179 55.000 0.00 0.00 41.52 4.41 F
2140 2786 1.383456 TTGGTGCAAGGACAGTGTGC 61.383 55.000 6.68 6.68 38.78 4.57 F
3559 4441 1.544724 TGGCCCAGCACACTAAAATC 58.455 50.000 0.00 0.00 0.00 2.17 F
3979 5285 1.802508 GCTGTCAGGTTTTTGCACCAC 60.803 52.381 1.14 0.00 39.62 4.16 F
5238 6551 1.270274 CAAGCCACAGCAGCACAATTA 59.730 47.619 0.00 0.00 43.56 1.40 F
5757 7073 0.899720 CATGCAAGGTGGGCTTTCAT 59.100 50.000 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2715 0.673985 GAGCCTCCAACCAACAAACC 59.326 55.000 0.00 0.0 0.00 3.27 R
2584 3346 3.121738 TGCATCCAGTGATCTAGCATG 57.878 47.619 0.00 0.0 0.00 4.06 R
2865 3745 3.831333 TGGCAAGCCAACATTTGAGAATA 59.169 39.130 12.11 0.0 44.12 1.75 R
3672 4554 0.178873 AGGAAGGAGGTAGTGCCCAA 60.179 55.000 0.00 0.0 38.26 4.12 R
4944 6254 0.651031 GAGTTATTCCGCGCTCAACC 59.349 55.000 5.56 0.0 0.00 3.77 R
5304 6617 1.160137 ATTGTTCAAGCTCTCACCGC 58.840 50.000 0.00 0.0 0.00 5.68 R
6459 7868 1.612395 GCTCACAGGAGAGAGGTGGG 61.612 65.000 0.00 0.0 44.26 4.61 R
7436 8850 7.732222 AGAAACTCAGGATTCTCTATGTTCT 57.268 36.000 0.00 0.0 30.37 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 5.123227 TCGACCTGACAAAACTGAAAAGAT 58.877 37.500 0.00 0.00 0.00 2.40
80 85 7.449934 AAACTGAAAAGATAACAAAACGCTG 57.550 32.000 0.00 0.00 0.00 5.18
81 86 6.371809 ACTGAAAAGATAACAAAACGCTGA 57.628 33.333 0.00 0.00 0.00 4.26
105 111 3.708563 TTGCACAAAGAAACACTAGCC 57.291 42.857 0.00 0.00 0.00 3.93
108 114 3.445450 TGCACAAAGAAACACTAGCCAAA 59.555 39.130 0.00 0.00 0.00 3.28
149 155 2.826674 ACCCATGGTTGGATGGTTAG 57.173 50.000 11.73 0.00 46.92 2.34
152 158 2.423373 CCCATGGTTGGATGGTTAGGAG 60.423 54.545 11.73 0.00 46.92 3.69
157 163 2.355818 GGTTGGATGGTTAGGAGGACAC 60.356 54.545 0.00 0.00 0.00 3.67
165 171 4.223953 TGGTTAGGAGGACACTGATATCC 58.776 47.826 0.00 0.00 34.98 2.59
167 173 4.223953 GTTAGGAGGACACTGATATCCCA 58.776 47.826 0.00 0.00 35.38 4.37
174 180 3.117512 GGACACTGATATCCCAAACCCAT 60.118 47.826 0.00 0.00 0.00 4.00
194 200 6.607198 ACCCATCAAGGTTTAAATCATAGTGG 59.393 38.462 0.43 4.01 36.44 4.00
198 204 5.353123 TCAAGGTTTAAATCATAGTGGTCGC 59.647 40.000 0.43 0.00 0.00 5.19
227 233 6.997239 TCCTGAATTTCTCAAGATGACATG 57.003 37.500 0.00 0.00 32.17 3.21
228 234 5.356190 TCCTGAATTTCTCAAGATGACATGC 59.644 40.000 0.00 0.00 32.17 4.06
229 235 5.450137 CCTGAATTTCTCAAGATGACATGCC 60.450 44.000 0.00 0.00 32.17 4.40
230 236 5.011586 TGAATTTCTCAAGATGACATGCCA 58.988 37.500 0.00 0.00 0.00 4.92
231 237 5.124936 TGAATTTCTCAAGATGACATGCCAG 59.875 40.000 0.00 0.00 0.00 4.85
232 238 2.034104 TCTCAAGATGACATGCCAGC 57.966 50.000 0.00 0.00 0.00 4.85
233 239 1.558294 TCTCAAGATGACATGCCAGCT 59.442 47.619 0.00 0.00 33.74 4.24
235 241 3.198417 TCTCAAGATGACATGCCAGCTTA 59.802 43.478 12.30 0.00 40.37 3.09
236 242 3.538591 TCAAGATGACATGCCAGCTTAG 58.461 45.455 12.30 7.49 40.37 2.18
238 244 3.191078 AGATGACATGCCAGCTTAGTC 57.809 47.619 0.00 0.00 26.57 2.59
239 245 2.770802 AGATGACATGCCAGCTTAGTCT 59.229 45.455 0.00 0.00 26.57 3.24
240 246 3.199508 AGATGACATGCCAGCTTAGTCTT 59.800 43.478 0.00 5.17 26.57 3.01
241 247 2.977914 TGACATGCCAGCTTAGTCTTC 58.022 47.619 0.00 0.00 0.00 2.87
242 248 2.568956 TGACATGCCAGCTTAGTCTTCT 59.431 45.455 0.00 0.00 0.00 2.85
243 249 3.008375 TGACATGCCAGCTTAGTCTTCTT 59.992 43.478 0.00 0.00 0.00 2.52
244 250 3.341823 ACATGCCAGCTTAGTCTTCTTG 58.658 45.455 0.00 0.00 0.00 3.02
245 251 3.008375 ACATGCCAGCTTAGTCTTCTTGA 59.992 43.478 0.00 0.00 0.00 3.02
246 252 3.769739 TGCCAGCTTAGTCTTCTTGAA 57.230 42.857 0.00 0.00 0.00 2.69
247 253 3.668447 TGCCAGCTTAGTCTTCTTGAAG 58.332 45.455 4.13 4.13 0.00 3.02
248 254 3.324846 TGCCAGCTTAGTCTTCTTGAAGA 59.675 43.478 8.80 8.80 0.00 2.87
249 255 4.019860 TGCCAGCTTAGTCTTCTTGAAGAT 60.020 41.667 15.02 7.97 0.00 2.40
250 256 4.332268 GCCAGCTTAGTCTTCTTGAAGATG 59.668 45.833 15.02 8.76 35.58 2.90
251 257 4.332268 CCAGCTTAGTCTTCTTGAAGATGC 59.668 45.833 15.02 15.29 34.72 3.91
252 258 5.177326 CAGCTTAGTCTTCTTGAAGATGCT 58.823 41.667 15.02 16.77 29.61 3.79
253 259 5.291614 CAGCTTAGTCTTCTTGAAGATGCTC 59.708 44.000 15.02 4.02 29.61 4.26
254 260 5.046735 AGCTTAGTCTTCTTGAAGATGCTCA 60.047 40.000 15.02 1.84 0.00 4.26
255 261 5.816777 GCTTAGTCTTCTTGAAGATGCTCAT 59.183 40.000 15.02 2.75 0.00 2.90
256 262 6.983307 GCTTAGTCTTCTTGAAGATGCTCATA 59.017 38.462 15.02 1.99 0.00 2.15
257 263 7.169645 GCTTAGTCTTCTTGAAGATGCTCATAG 59.830 40.741 15.02 8.72 0.00 2.23
258 264 6.788598 AGTCTTCTTGAAGATGCTCATAGA 57.211 37.500 15.02 0.00 0.00 1.98
259 265 6.808829 AGTCTTCTTGAAGATGCTCATAGAG 58.191 40.000 15.02 0.00 0.00 2.43
260 266 6.606796 AGTCTTCTTGAAGATGCTCATAGAGA 59.393 38.462 15.02 0.00 0.00 3.10
261 267 7.288389 AGTCTTCTTGAAGATGCTCATAGAGAT 59.712 37.037 15.02 0.00 0.00 2.75
262 268 8.575589 GTCTTCTTGAAGATGCTCATAGAGATA 58.424 37.037 15.02 0.00 0.00 1.98
263 269 8.795513 TCTTCTTGAAGATGCTCATAGAGATAG 58.204 37.037 8.80 0.00 0.00 2.08
264 270 8.703378 TTCTTGAAGATGCTCATAGAGATAGA 57.297 34.615 0.00 0.00 0.00 1.98
265 271 8.703378 TCTTGAAGATGCTCATAGAGATAGAA 57.297 34.615 0.00 0.00 0.00 2.10
266 272 9.311676 TCTTGAAGATGCTCATAGAGATAGAAT 57.688 33.333 0.00 0.00 0.00 2.40
267 273 9.361315 CTTGAAGATGCTCATAGAGATAGAATG 57.639 37.037 0.00 0.00 0.00 2.67
268 274 8.419922 TGAAGATGCTCATAGAGATAGAATGT 57.580 34.615 0.00 0.00 0.00 2.71
269 275 8.305317 TGAAGATGCTCATAGAGATAGAATGTG 58.695 37.037 0.00 0.00 0.00 3.21
270 276 6.632909 AGATGCTCATAGAGATAGAATGTGC 58.367 40.000 0.00 0.00 33.82 4.57
271 277 4.802999 TGCTCATAGAGATAGAATGTGCG 58.197 43.478 0.00 0.00 35.34 5.34
272 278 4.279420 TGCTCATAGAGATAGAATGTGCGT 59.721 41.667 0.00 0.00 35.34 5.24
273 279 4.620609 GCTCATAGAGATAGAATGTGCGTG 59.379 45.833 0.00 0.00 0.00 5.34
274 280 5.767269 CTCATAGAGATAGAATGTGCGTGT 58.233 41.667 0.00 0.00 0.00 4.49
275 281 5.523369 TCATAGAGATAGAATGTGCGTGTG 58.477 41.667 0.00 0.00 0.00 3.82
276 282 3.876274 AGAGATAGAATGTGCGTGTGT 57.124 42.857 0.00 0.00 0.00 3.72
277 283 3.515630 AGAGATAGAATGTGCGTGTGTG 58.484 45.455 0.00 0.00 0.00 3.82
278 284 2.002586 AGATAGAATGTGCGTGTGTGC 58.997 47.619 0.00 0.00 0.00 4.57
279 285 0.721154 ATAGAATGTGCGTGTGTGCG 59.279 50.000 0.00 0.00 37.81 5.34
280 286 0.598942 TAGAATGTGCGTGTGTGCGT 60.599 50.000 0.00 0.00 37.81 5.24
281 287 1.010125 GAATGTGCGTGTGTGCGTT 60.010 52.632 0.00 0.00 37.81 4.84
282 288 0.591236 GAATGTGCGTGTGTGCGTTT 60.591 50.000 0.00 0.00 37.81 3.60
283 289 0.658368 AATGTGCGTGTGTGCGTTTA 59.342 45.000 0.00 0.00 37.81 2.01
284 290 0.871722 ATGTGCGTGTGTGCGTTTAT 59.128 45.000 0.00 0.00 37.81 1.40
285 291 1.499049 TGTGCGTGTGTGCGTTTATA 58.501 45.000 0.00 0.00 37.81 0.98
286 292 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
287 293 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
288 294 1.336980 TGCGTGTGTGCGTTTATAGGA 60.337 47.619 0.00 0.00 37.81 2.94
289 295 1.931172 GCGTGTGTGCGTTTATAGGAT 59.069 47.619 0.00 0.00 0.00 3.24
290 296 2.285602 GCGTGTGTGCGTTTATAGGATG 60.286 50.000 0.00 0.00 0.00 3.51
291 297 3.183754 CGTGTGTGCGTTTATAGGATGA 58.816 45.455 0.00 0.00 0.00 2.92
292 298 3.615056 CGTGTGTGCGTTTATAGGATGAA 59.385 43.478 0.00 0.00 0.00 2.57
293 299 4.270084 CGTGTGTGCGTTTATAGGATGAAT 59.730 41.667 0.00 0.00 0.00 2.57
294 300 5.501715 GTGTGTGCGTTTATAGGATGAATG 58.498 41.667 0.00 0.00 0.00 2.67
295 301 5.064707 GTGTGTGCGTTTATAGGATGAATGT 59.935 40.000 0.00 0.00 0.00 2.71
296 302 6.256975 GTGTGTGCGTTTATAGGATGAATGTA 59.743 38.462 0.00 0.00 0.00 2.29
297 303 6.989759 TGTGTGCGTTTATAGGATGAATGTAT 59.010 34.615 0.00 0.00 0.00 2.29
298 304 7.042119 TGTGTGCGTTTATAGGATGAATGTATG 60.042 37.037 0.00 0.00 0.00 2.39
299 305 6.073276 TGTGCGTTTATAGGATGAATGTATGC 60.073 38.462 0.00 0.00 0.00 3.14
300 306 5.120053 TGCGTTTATAGGATGAATGTATGCG 59.880 40.000 0.00 0.00 0.00 4.73
301 307 5.550981 CGTTTATAGGATGAATGTATGCGC 58.449 41.667 0.00 0.00 0.00 6.09
302 308 5.120053 CGTTTATAGGATGAATGTATGCGCA 59.880 40.000 14.96 14.96 0.00 6.09
303 309 6.183360 CGTTTATAGGATGAATGTATGCGCAT 60.183 38.462 28.23 28.23 0.00 4.73
304 310 7.010091 CGTTTATAGGATGAATGTATGCGCATA 59.990 37.037 25.78 25.78 0.00 3.14
305 311 8.830580 GTTTATAGGATGAATGTATGCGCATAT 58.169 33.333 31.14 17.07 0.00 1.78
310 316 8.543862 AGGATGAATGTATGCGCATATATATG 57.456 34.615 31.69 17.01 36.78 1.78
311 317 8.370182 AGGATGAATGTATGCGCATATATATGA 58.630 33.333 31.69 21.19 35.75 2.15
312 318 8.654215 GGATGAATGTATGCGCATATATATGAG 58.346 37.037 31.69 21.40 35.75 2.90
313 319 9.201127 GATGAATGTATGCGCATATATATGAGT 57.799 33.333 31.69 19.97 36.14 3.41
314 320 8.356533 TGAATGTATGCGCATATATATGAGTG 57.643 34.615 31.69 14.11 36.14 3.51
315 321 6.775939 ATGTATGCGCATATATATGAGTGC 57.224 37.500 30.88 21.56 36.14 4.40
316 322 5.659463 TGTATGCGCATATATATGAGTGCA 58.341 37.500 31.14 26.15 39.93 4.57
317 323 6.282930 TGTATGCGCATATATATGAGTGCAT 58.717 36.000 31.16 31.16 43.81 3.96
318 324 5.668558 ATGCGCATATATATGAGTGCATG 57.331 39.130 29.75 11.18 41.98 4.06
319 325 3.310501 TGCGCATATATATGAGTGCATGC 59.689 43.478 24.06 11.82 37.44 4.06
322 328 5.475273 GCATATATATGAGTGCATGCGTT 57.525 39.130 24.06 2.90 37.52 4.84
323 329 5.872635 GCATATATATGAGTGCATGCGTTT 58.127 37.500 24.06 0.00 37.52 3.60
324 330 5.735892 GCATATATATGAGTGCATGCGTTTG 59.264 40.000 24.06 0.00 37.52 2.93
325 331 2.480224 ATATGAGTGCATGCGTTTGC 57.520 45.000 14.09 4.96 43.07 3.68
326 332 6.621164 CATATATATGAGTGCATGCGTTTGCA 60.621 38.462 16.44 9.86 45.24 4.08
343 349 8.442605 GCGTTTGCACTATGTTAATTAAGAAA 57.557 30.769 0.00 0.00 42.15 2.52
344 350 8.907685 GCGTTTGCACTATGTTAATTAAGAAAA 58.092 29.630 0.00 0.00 42.15 2.29
382 388 4.542075 GGAAGAATCCGTGGCCTC 57.458 61.111 3.32 0.00 35.59 4.70
383 389 1.602237 GGAAGAATCCGTGGCCTCA 59.398 57.895 3.32 0.00 35.59 3.86
386 396 0.620556 AAGAATCCGTGGCCTCACAT 59.379 50.000 3.32 0.00 43.79 3.21
389 399 0.327924 AATCCGTGGCCTCACATCAA 59.672 50.000 3.32 0.00 43.79 2.57
391 401 1.003355 CCGTGGCCTCACATCAACT 60.003 57.895 3.32 0.00 43.79 3.16
401 411 4.569966 GCCTCACATCAACTGTCTTATCAG 59.430 45.833 0.00 0.00 35.29 2.90
423 433 3.429543 GGTGACATACAACGCGTAGAAAA 59.570 43.478 14.46 0.00 32.28 2.29
424 434 4.433805 GGTGACATACAACGCGTAGAAAAG 60.434 45.833 14.46 3.89 32.28 2.27
432 442 0.365859 CGCGTAGAAAAGACGGAAGC 59.634 55.000 0.00 0.00 40.66 3.86
473 483 1.281899 GGATGTCACGAAGCTACAGC 58.718 55.000 0.00 0.00 42.49 4.40
495 543 2.961522 AATGCGTGTGTAAACCGAAG 57.038 45.000 0.00 0.00 0.00 3.79
530 578 6.430000 CAGGGTTACTGTAGCAACTATTTTGT 59.570 38.462 4.08 0.00 42.42 2.83
649 1015 8.383947 AGATTTTAGGCTTAACCATATACTCCC 58.616 37.037 0.00 0.00 43.14 4.30
650 1016 7.701257 TTTTAGGCTTAACCATATACTCCCT 57.299 36.000 0.00 0.00 43.14 4.20
651 1017 6.930068 TTAGGCTTAACCATATACTCCCTC 57.070 41.667 0.00 0.00 43.14 4.30
652 1018 5.094569 AGGCTTAACCATATACTCCCTCT 57.905 43.478 0.00 0.00 43.14 3.69
653 1019 4.841246 AGGCTTAACCATATACTCCCTCTG 59.159 45.833 0.00 0.00 43.14 3.35
654 1020 4.593634 GGCTTAACCATATACTCCCTCTGT 59.406 45.833 0.00 0.00 38.86 3.41
655 1021 5.071923 GGCTTAACCATATACTCCCTCTGTT 59.928 44.000 0.00 0.00 38.86 3.16
656 1022 6.224584 GCTTAACCATATACTCCCTCTGTTC 58.775 44.000 0.00 0.00 0.00 3.18
657 1023 6.741801 GCTTAACCATATACTCCCTCTGTTCC 60.742 46.154 0.00 0.00 0.00 3.62
658 1024 3.231818 ACCATATACTCCCTCTGTTCCG 58.768 50.000 0.00 0.00 0.00 4.30
659 1025 3.117246 ACCATATACTCCCTCTGTTCCGA 60.117 47.826 0.00 0.00 0.00 4.55
660 1026 3.895656 CCATATACTCCCTCTGTTCCGAA 59.104 47.826 0.00 0.00 0.00 4.30
661 1027 4.528596 CCATATACTCCCTCTGTTCCGAAT 59.471 45.833 0.00 0.00 0.00 3.34
662 1028 5.012148 CCATATACTCCCTCTGTTCCGAATT 59.988 44.000 0.00 0.00 0.00 2.17
663 1029 6.210784 CCATATACTCCCTCTGTTCCGAATTA 59.789 42.308 0.00 0.00 0.00 1.40
664 1030 7.093289 CCATATACTCCCTCTGTTCCGAATTAT 60.093 40.741 0.00 0.00 0.00 1.28
665 1031 6.749036 ATACTCCCTCTGTTCCGAATTATT 57.251 37.500 0.00 0.00 0.00 1.40
666 1032 5.437191 ACTCCCTCTGTTCCGAATTATTT 57.563 39.130 0.00 0.00 0.00 1.40
667 1033 5.186198 ACTCCCTCTGTTCCGAATTATTTG 58.814 41.667 0.00 0.00 0.00 2.32
668 1034 5.174037 TCCCTCTGTTCCGAATTATTTGT 57.826 39.130 0.00 0.00 0.00 2.83
669 1035 5.183228 TCCCTCTGTTCCGAATTATTTGTC 58.817 41.667 0.00 0.00 0.00 3.18
670 1036 5.045869 TCCCTCTGTTCCGAATTATTTGTCT 60.046 40.000 0.00 0.00 0.00 3.41
671 1037 5.648092 CCCTCTGTTCCGAATTATTTGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
672 1038 6.403636 CCCTCTGTTCCGAATTATTTGTCTTG 60.404 42.308 0.00 0.00 0.00 3.02
673 1039 6.403636 CCTCTGTTCCGAATTATTTGTCTTGG 60.404 42.308 0.00 0.00 0.00 3.61
674 1040 6.234920 TCTGTTCCGAATTATTTGTCTTGGA 58.765 36.000 0.00 0.00 0.00 3.53
675 1041 6.884295 TCTGTTCCGAATTATTTGTCTTGGAT 59.116 34.615 0.00 0.00 0.00 3.41
676 1042 7.393234 TCTGTTCCGAATTATTTGTCTTGGATT 59.607 33.333 0.00 0.00 0.00 3.01
677 1043 7.891561 TGTTCCGAATTATTTGTCTTGGATTT 58.108 30.769 0.00 0.00 0.00 2.17
678 1044 7.812191 TGTTCCGAATTATTTGTCTTGGATTTG 59.188 33.333 0.00 0.00 0.00 2.32
679 1045 7.461182 TCCGAATTATTTGTCTTGGATTTGT 57.539 32.000 0.00 0.00 0.00 2.83
680 1046 7.535139 TCCGAATTATTTGTCTTGGATTTGTC 58.465 34.615 0.00 0.00 0.00 3.18
681 1047 7.393234 TCCGAATTATTTGTCTTGGATTTGTCT 59.607 33.333 0.00 0.00 0.00 3.41
682 1048 8.673711 CCGAATTATTTGTCTTGGATTTGTCTA 58.326 33.333 0.00 0.00 0.00 2.59
683 1049 9.708222 CGAATTATTTGTCTTGGATTTGTCTAG 57.292 33.333 0.00 0.00 0.00 2.43
688 1054 7.827819 TTTGTCTTGGATTTGTCTAGATACG 57.172 36.000 0.00 0.00 0.00 3.06
689 1055 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
690 1056 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
691 1057 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
692 1058 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
693 1059 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
694 1060 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
695 1061 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
711 1077 8.008513 ACGGATGTATCTACACTCATTTTAGT 57.991 34.615 0.00 0.00 39.30 2.24
723 1089 7.938563 CACTCATTTTAGTGCTAGATACCTC 57.061 40.000 0.00 0.00 40.40 3.85
724 1090 6.926272 CACTCATTTTAGTGCTAGATACCTCC 59.074 42.308 0.00 0.00 40.40 4.30
725 1091 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
726 1092 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
727 1093 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
728 1094 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
740 1106 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
741 1107 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
742 1108 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
743 1109 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
744 1110 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
745 1111 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
746 1112 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
747 1113 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
748 1114 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
749 1115 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
756 1122 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
757 1123 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
758 1124 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
759 1125 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
790 1156 7.015682 GGAGTAGATATGAAGAAGGGATGTCAA 59.984 40.741 0.00 0.00 0.00 3.18
791 1157 8.503428 AGTAGATATGAAGAAGGGATGTCAAT 57.497 34.615 0.00 0.00 0.00 2.57
796 1162 8.915057 ATATGAAGAAGGGATGTCAATGTTAG 57.085 34.615 0.00 0.00 0.00 2.34
797 1163 6.373005 TGAAGAAGGGATGTCAATGTTAGA 57.627 37.500 0.00 0.00 0.00 2.10
799 1165 5.365021 AGAAGGGATGTCAATGTTAGAGG 57.635 43.478 0.00 0.00 0.00 3.69
801 1167 5.669447 AGAAGGGATGTCAATGTTAGAGGAT 59.331 40.000 0.00 0.00 0.00 3.24
802 1168 5.559148 AGGGATGTCAATGTTAGAGGATC 57.441 43.478 0.00 0.00 0.00 3.36
803 1169 4.349342 AGGGATGTCAATGTTAGAGGATCC 59.651 45.833 2.48 2.48 33.66 3.36
804 1170 4.310769 GGATGTCAATGTTAGAGGATCCG 58.689 47.826 5.98 0.00 33.66 4.18
805 1171 3.819564 TGTCAATGTTAGAGGATCCGG 57.180 47.619 5.98 0.00 33.66 5.14
808 1174 4.120589 GTCAATGTTAGAGGATCCGGTTC 58.879 47.826 5.98 1.67 33.66 3.62
809 1175 3.134081 TCAATGTTAGAGGATCCGGTTCC 59.866 47.826 22.05 22.05 33.66 3.62
810 1176 2.241281 TGTTAGAGGATCCGGTTCCA 57.759 50.000 29.14 9.82 38.32 3.53
812 1178 2.291996 TGTTAGAGGATCCGGTTCCAGA 60.292 50.000 29.14 13.63 38.32 3.86
813 1179 2.764572 GTTAGAGGATCCGGTTCCAGAA 59.235 50.000 29.14 17.97 38.32 3.02
814 1180 1.952621 AGAGGATCCGGTTCCAGAAA 58.047 50.000 29.14 0.00 38.32 2.52
826 1192 1.248785 TCCAGAAAGGACCGTCTCGG 61.249 60.000 6.64 6.64 43.07 4.63
844 1210 1.587054 GTGTCTCCGTCTCAGGTGG 59.413 63.158 0.00 0.00 0.00 4.61
900 1267 1.329292 CGAAGCAAGTTTGACGGTTCA 59.671 47.619 0.00 0.00 37.06 3.18
962 1330 1.308998 CAAGAGGCCAACAACGTTCT 58.691 50.000 5.01 0.00 0.00 3.01
1104 1559 3.712907 CACCCCCTACCACCGTGG 61.713 72.222 16.47 16.47 45.02 4.94
1136 1600 4.436998 CGCCGCTCCTTCTTCGGT 62.437 66.667 1.83 0.00 44.58 4.69
1248 1712 1.261938 TGGACTCGTGTGGGTATGGG 61.262 60.000 0.00 0.00 0.00 4.00
1270 1734 1.952635 GTGGACGTGGACGACAACC 60.953 63.158 6.12 4.69 43.02 3.77
1320 1784 4.296265 GGAACCATCCGTGTGACC 57.704 61.111 0.00 0.00 35.59 4.02
1371 1835 1.517257 CTTCTACGTCCGCTGCCTG 60.517 63.158 0.00 0.00 0.00 4.85
1387 1851 2.449518 TGGACCTCCCAACCAGCA 60.450 61.111 0.00 0.00 43.29 4.41
1432 1896 3.453679 GCTCGGCGGAGAACCTCT 61.454 66.667 24.11 0.00 43.27 3.69
1433 1897 3.007973 GCTCGGCGGAGAACCTCTT 62.008 63.158 24.11 0.00 43.27 2.85
1469 1933 0.109342 CTGTCCACTTCCTGGTTGCT 59.891 55.000 0.00 0.00 41.52 3.91
1470 1934 0.179020 TGTCCACTTCCTGGTTGCTG 60.179 55.000 0.00 0.00 41.52 4.41
1521 1985 2.586079 CGTCCGCCATCGCTTGAT 60.586 61.111 0.00 0.00 0.00 2.57
1650 2117 6.992123 TCACAAGGGATATATTGCAGTACAAG 59.008 38.462 0.00 0.00 42.87 3.16
1699 2169 2.435059 GGACCACGGAGCTCTTGC 60.435 66.667 14.64 0.00 40.05 4.01
1904 2405 5.221581 ACCGAGTAAACTACAACAGATTGGT 60.222 40.000 0.00 0.00 40.42 3.67
1956 2601 3.003689 CCGATGGTTTGATAATCAGGTGC 59.996 47.826 0.00 0.00 0.00 5.01
2069 2715 3.835395 ACTGAGGAGAAGGAAGTACAAGG 59.165 47.826 0.00 0.00 0.00 3.61
2140 2786 1.383456 TTGGTGCAAGGACAGTGTGC 61.383 55.000 6.68 6.68 38.78 4.57
2244 2893 3.895041 CCCTGAAAACATGTTACCCAACT 59.105 43.478 12.39 0.00 35.56 3.16
2584 3346 2.422479 GGTTCTCATTTCGTTTAGCCCC 59.578 50.000 0.00 0.00 0.00 5.80
2724 3492 7.874016 TGCTGACATTCTTCAAATTGCTTAAAT 59.126 29.630 0.00 0.00 0.00 1.40
2727 3495 8.497554 TGACATTCTTCAAATTGCTTAAATTGC 58.502 29.630 0.00 0.00 38.52 3.56
2862 3740 2.205022 TGCCAATCTCTGGGAAGTTG 57.795 50.000 0.00 0.00 43.74 3.16
2865 3745 2.357569 GCCAATCTCTGGGAAGTTGGAT 60.358 50.000 12.96 0.00 46.54 3.41
2870 3750 6.410157 CCAATCTCTGGGAAGTTGGATATTCT 60.410 42.308 4.21 0.00 42.17 2.40
3312 4194 4.081476 GCTGTTATTTCCATTTTGCCCTCT 60.081 41.667 0.00 0.00 0.00 3.69
3519 4401 3.052036 CAAGGCAAAACTGGTTTCATCG 58.948 45.455 0.00 0.00 31.45 3.84
3542 4424 5.234329 CGTACTATACTTCTGTGGCATTTGG 59.766 44.000 0.00 0.00 0.00 3.28
3559 4441 1.544724 TGGCCCAGCACACTAAAATC 58.455 50.000 0.00 0.00 0.00 2.17
3672 4554 4.082125 CTGCCTCAATGTTTAGAAACCCT 58.918 43.478 2.80 0.00 38.11 4.34
3679 4561 2.312390 TGTTTAGAAACCCTTGGGCAC 58.688 47.619 5.46 0.00 38.11 5.01
3695 4577 1.908483 CACTACCTCCTTCCTGGGC 59.092 63.158 0.00 0.00 36.20 5.36
3730 4612 2.035940 TCATGCATGCTGTGGCCA 59.964 55.556 22.25 0.00 37.74 5.36
3972 5278 3.260632 ACTTTTGGTGCTGTCAGGTTTTT 59.739 39.130 1.14 0.00 0.00 1.94
3979 5285 1.802508 GCTGTCAGGTTTTTGCACCAC 60.803 52.381 1.14 0.00 39.62 4.16
4186 5492 7.205297 CCTTCATGTATTGGTTGATTCCATTC 58.795 38.462 0.00 0.00 37.33 2.67
4187 5493 7.069085 CCTTCATGTATTGGTTGATTCCATTCT 59.931 37.037 0.00 0.00 37.33 2.40
4211 5517 7.703298 TCACATTGAGAAGCAAAAATTGAAG 57.297 32.000 0.00 0.00 40.48 3.02
4381 5687 5.222631 GCCATTTAGGTATACTGCAATTGC 58.777 41.667 23.69 23.69 40.61 3.56
4414 5722 4.946784 AACTTCCGATGATGCTTACAAC 57.053 40.909 0.00 0.00 0.00 3.32
4415 5723 3.937814 ACTTCCGATGATGCTTACAACA 58.062 40.909 0.00 0.00 32.62 3.33
4642 5952 9.850198 TGAATCACATGAACCATATTCTTATCA 57.150 29.630 0.00 0.00 0.00 2.15
4894 6204 4.208632 GTGAAGGCTCACCATCCG 57.791 61.111 5.98 0.00 45.41 4.18
4944 6254 9.801873 TGAAGTTTGGAATAAAAGAGAAACAAG 57.198 29.630 0.00 0.00 0.00 3.16
4971 6284 3.936453 AGCGCGGAATAACTCAAAATACA 59.064 39.130 8.83 0.00 0.00 2.29
5154 6467 3.630312 GCCGGCCACAGAAGATTTAAATA 59.370 43.478 18.11 0.00 0.00 1.40
5158 6471 5.299279 CGGCCACAGAAGATTTAAATACCAT 59.701 40.000 2.24 0.00 0.00 3.55
5238 6551 1.270274 CAAGCCACAGCAGCACAATTA 59.730 47.619 0.00 0.00 43.56 1.40
5272 6585 1.755621 CGGACCTCAGATCATCCTCCA 60.756 57.143 0.00 0.00 0.00 3.86
5304 6617 9.586435 AATAAAATAGATGGAAAAGAAAAGGCG 57.414 29.630 0.00 0.00 0.00 5.52
5305 6618 4.639135 ATAGATGGAAAAGAAAAGGCGC 57.361 40.909 0.00 0.00 0.00 6.53
5387 6700 3.857093 GCACGAATGTTGAAACACTGTTT 59.143 39.130 6.87 6.87 42.51 2.83
5757 7073 0.899720 CATGCAAGGTGGGCTTTCAT 59.100 50.000 0.00 0.00 0.00 2.57
5868 7184 8.311650 TGCAGAGTTCTTTTAGACATCTTTAC 57.688 34.615 0.00 0.00 0.00 2.01
6342 7751 3.609409 GCAGAGTTTTTAGCCCAAACGAG 60.609 47.826 0.00 0.00 38.85 4.18
6413 7822 2.565841 AGTCTTGGAAAGTGCAGACAC 58.434 47.619 0.00 0.00 46.34 3.67
6459 7868 7.849804 TTAGCATTTCTCTGTAATCTTGGTC 57.150 36.000 0.00 0.00 0.00 4.02
6500 7909 2.689983 CCATGACCATTAGTTTCTGGCC 59.310 50.000 0.00 0.00 35.88 5.36
6538 7947 6.192970 AGCTTATTATACCTGTGCTTCCAT 57.807 37.500 0.00 0.00 0.00 3.41
6683 8092 2.158325 TCCTTGCCAGTCAAAATTCCCT 60.158 45.455 0.00 0.00 33.65 4.20
6859 8270 9.794685 GGATAAATCTTTTCTTGGAGCTTTAAG 57.205 33.333 4.93 4.93 0.00 1.85
7411 8822 5.441718 AGAATGCTCCCTCATGTCTTTAA 57.558 39.130 0.00 0.00 0.00 1.52
7543 8957 0.603065 GTGAATGTGCCCCTCCAAAC 59.397 55.000 0.00 0.00 0.00 2.93
7545 8959 0.603065 GAATGTGCCCCTCCAAACAC 59.397 55.000 0.00 0.00 0.00 3.32
7624 9042 6.386654 CATTACGGTTGAATTTTGCTAAGGT 58.613 36.000 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.352648 TGTCAGGTCGATGTCTATGTGA 58.647 45.455 0.00 0.00 0.00 3.58
38 39 5.047306 TCAGTTTTGTCAGGTCGATGTCTAT 60.047 40.000 0.00 0.00 0.00 1.98
47 48 7.703328 TGTTATCTTTTCAGTTTTGTCAGGTC 58.297 34.615 0.00 0.00 0.00 3.85
48 49 7.639113 TGTTATCTTTTCAGTTTTGTCAGGT 57.361 32.000 0.00 0.00 0.00 4.00
49 50 8.925161 TTTGTTATCTTTTCAGTTTTGTCAGG 57.075 30.769 0.00 0.00 0.00 3.86
68 73 2.423892 TGCAAAGGTCAGCGTTTTGTTA 59.576 40.909 0.00 0.00 31.23 2.41
80 85 4.110036 AGTGTTTCTTTGTGCAAAGGTC 57.890 40.909 20.39 13.03 45.80 3.85
81 86 4.440112 GCTAGTGTTTCTTTGTGCAAAGGT 60.440 41.667 20.39 5.71 45.80 3.50
127 133 3.551635 AACCATCCAACCATGGGTTAA 57.448 42.857 18.09 0.00 41.52 2.01
128 134 3.053245 CCTAACCATCCAACCATGGGTTA 60.053 47.826 18.09 11.41 41.52 2.85
133 139 2.509548 TCCTCCTAACCATCCAACCATG 59.490 50.000 0.00 0.00 0.00 3.66
134 140 2.509964 GTCCTCCTAACCATCCAACCAT 59.490 50.000 0.00 0.00 0.00 3.55
139 145 2.187958 CAGTGTCCTCCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
149 155 3.433740 GGTTTGGGATATCAGTGTCCTCC 60.434 52.174 4.83 0.00 36.02 4.30
152 158 2.241176 TGGGTTTGGGATATCAGTGTCC 59.759 50.000 4.83 1.47 35.04 4.02
157 163 4.147321 CCTTGATGGGTTTGGGATATCAG 58.853 47.826 4.83 0.00 0.00 2.90
174 180 5.353123 GCGACCACTATGATTTAAACCTTGA 59.647 40.000 0.00 0.00 0.00 3.02
182 188 7.387673 CAGGATAAATGCGACCACTATGATTTA 59.612 37.037 0.00 0.00 0.00 1.40
189 195 4.746535 TTCAGGATAAATGCGACCACTA 57.253 40.909 0.00 0.00 0.00 2.74
190 196 3.627395 TTCAGGATAAATGCGACCACT 57.373 42.857 0.00 0.00 0.00 4.00
194 200 6.363577 TGAGAAATTCAGGATAAATGCGAC 57.636 37.500 0.00 0.00 0.00 5.19
227 233 3.931578 TCTTCAAGAAGACTAAGCTGGC 58.068 45.455 8.37 0.00 42.06 4.85
238 244 8.795513 TCTATCTCTATGAGCATCTTCAAGAAG 58.204 37.037 3.43 3.43 39.71 2.85
239 245 8.703378 TCTATCTCTATGAGCATCTTCAAGAA 57.297 34.615 0.00 0.00 34.92 2.52
240 246 8.703378 TTCTATCTCTATGAGCATCTTCAAGA 57.297 34.615 0.00 0.00 34.92 3.02
241 247 9.361315 CATTCTATCTCTATGAGCATCTTCAAG 57.639 37.037 0.00 0.00 34.92 3.02
242 248 8.868103 ACATTCTATCTCTATGAGCATCTTCAA 58.132 33.333 0.00 0.00 34.92 2.69
243 249 8.305317 CACATTCTATCTCTATGAGCATCTTCA 58.695 37.037 0.00 0.00 34.92 3.02
244 250 7.276218 GCACATTCTATCTCTATGAGCATCTTC 59.724 40.741 0.00 0.00 36.37 2.87
245 251 7.098477 GCACATTCTATCTCTATGAGCATCTT 58.902 38.462 0.00 0.00 36.37 2.40
246 252 6.625520 CGCACATTCTATCTCTATGAGCATCT 60.626 42.308 0.00 0.00 36.20 2.90
247 253 5.515982 CGCACATTCTATCTCTATGAGCATC 59.484 44.000 0.00 0.00 36.20 3.91
248 254 5.047448 ACGCACATTCTATCTCTATGAGCAT 60.047 40.000 0.00 0.00 36.20 3.79
249 255 4.279420 ACGCACATTCTATCTCTATGAGCA 59.721 41.667 0.00 0.00 36.20 4.26
250 256 4.620609 CACGCACATTCTATCTCTATGAGC 59.379 45.833 0.00 0.00 34.10 4.26
251 257 5.628606 CACACGCACATTCTATCTCTATGAG 59.371 44.000 0.00 0.00 0.00 2.90
252 258 5.067805 ACACACGCACATTCTATCTCTATGA 59.932 40.000 0.00 0.00 0.00 2.15
253 259 5.174579 CACACACGCACATTCTATCTCTATG 59.825 44.000 0.00 0.00 0.00 2.23
254 260 5.284864 CACACACGCACATTCTATCTCTAT 58.715 41.667 0.00 0.00 0.00 1.98
255 261 4.672409 CACACACGCACATTCTATCTCTA 58.328 43.478 0.00 0.00 0.00 2.43
256 262 3.515630 CACACACGCACATTCTATCTCT 58.484 45.455 0.00 0.00 0.00 3.10
257 263 2.029728 GCACACACGCACATTCTATCTC 59.970 50.000 0.00 0.00 0.00 2.75
258 264 2.002586 GCACACACGCACATTCTATCT 58.997 47.619 0.00 0.00 0.00 1.98
259 265 1.267038 CGCACACACGCACATTCTATC 60.267 52.381 0.00 0.00 0.00 2.08
260 266 0.721154 CGCACACACGCACATTCTAT 59.279 50.000 0.00 0.00 0.00 1.98
261 267 0.598942 ACGCACACACGCACATTCTA 60.599 50.000 0.00 0.00 36.19 2.10
262 268 1.436195 AACGCACACACGCACATTCT 61.436 50.000 0.00 0.00 36.19 2.40
263 269 0.591236 AAACGCACACACGCACATTC 60.591 50.000 0.00 0.00 36.19 2.67
264 270 0.658368 TAAACGCACACACGCACATT 59.342 45.000 0.00 0.00 36.19 2.71
265 271 0.871722 ATAAACGCACACACGCACAT 59.128 45.000 0.00 0.00 36.19 3.21
266 272 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
267 273 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
268 274 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
269 275 1.352114 TCCTATAAACGCACACACGC 58.648 50.000 0.00 0.00 36.19 5.34
270 276 3.183754 TCATCCTATAAACGCACACACG 58.816 45.455 0.00 0.00 39.50 4.49
271 277 5.064707 ACATTCATCCTATAAACGCACACAC 59.935 40.000 0.00 0.00 0.00 3.82
272 278 5.182487 ACATTCATCCTATAAACGCACACA 58.818 37.500 0.00 0.00 0.00 3.72
273 279 5.734855 ACATTCATCCTATAAACGCACAC 57.265 39.130 0.00 0.00 0.00 3.82
274 280 6.073276 GCATACATTCATCCTATAAACGCACA 60.073 38.462 0.00 0.00 0.00 4.57
275 281 6.307155 GCATACATTCATCCTATAAACGCAC 58.693 40.000 0.00 0.00 0.00 5.34
276 282 5.120053 CGCATACATTCATCCTATAAACGCA 59.880 40.000 0.00 0.00 0.00 5.24
277 283 5.550981 CGCATACATTCATCCTATAAACGC 58.449 41.667 0.00 0.00 0.00 4.84
278 284 5.120053 TGCGCATACATTCATCCTATAAACG 59.880 40.000 5.66 0.00 0.00 3.60
279 285 6.480524 TGCGCATACATTCATCCTATAAAC 57.519 37.500 5.66 0.00 0.00 2.01
280 286 8.962884 ATATGCGCATACATTCATCCTATAAA 57.037 30.769 31.17 6.12 0.00 1.40
284 290 9.643693 CATATATATGCGCATACATTCATCCTA 57.356 33.333 31.17 16.61 0.00 2.94
285 291 8.370182 TCATATATATGCGCATACATTCATCCT 58.630 33.333 31.17 14.98 33.76 3.24
286 292 8.538409 TCATATATATGCGCATACATTCATCC 57.462 34.615 31.17 0.00 33.76 3.51
287 293 9.201127 ACTCATATATATGCGCATACATTCATC 57.799 33.333 31.17 0.00 33.76 2.92
288 294 8.985805 CACTCATATATATGCGCATACATTCAT 58.014 33.333 31.17 18.12 33.76 2.57
289 295 7.042523 GCACTCATATATATGCGCATACATTCA 60.043 37.037 31.17 12.68 33.76 2.57
290 296 7.042523 TGCACTCATATATATGCGCATACATTC 60.043 37.037 31.17 12.53 41.07 2.67
291 297 6.762661 TGCACTCATATATATGCGCATACATT 59.237 34.615 31.17 18.56 41.07 2.71
292 298 6.282930 TGCACTCATATATATGCGCATACAT 58.717 36.000 31.17 27.10 41.07 2.29
293 299 5.659463 TGCACTCATATATATGCGCATACA 58.341 37.500 31.17 22.05 41.07 2.29
294 300 6.587651 CATGCACTCATATATATGCGCATAC 58.412 40.000 31.17 15.06 39.49 2.39
295 301 5.178067 GCATGCACTCATATATATGCGCATA 59.822 40.000 30.72 30.72 39.49 3.14
296 302 4.024302 GCATGCACTCATATATATGCGCAT 60.024 41.667 28.23 28.23 40.77 4.73
297 303 3.310501 GCATGCACTCATATATATGCGCA 59.689 43.478 24.22 24.22 41.07 6.09
298 304 3.870007 GCATGCACTCATATATATGCGC 58.130 45.455 14.21 17.25 41.07 6.09
300 306 5.475273 AACGCATGCACTCATATATATGC 57.525 39.130 19.57 8.26 37.98 3.14
301 307 5.735892 GCAAACGCATGCACTCATATATATG 59.264 40.000 19.57 15.47 45.70 1.78
302 308 5.872635 GCAAACGCATGCACTCATATATAT 58.127 37.500 19.57 0.00 45.70 0.86
303 309 5.281693 GCAAACGCATGCACTCATATATA 57.718 39.130 19.57 0.00 45.70 0.86
304 310 4.151258 GCAAACGCATGCACTCATATAT 57.849 40.909 19.57 0.00 45.70 0.86
305 311 3.607422 GCAAACGCATGCACTCATATA 57.393 42.857 19.57 0.00 45.70 0.86
306 312 2.480224 GCAAACGCATGCACTCATAT 57.520 45.000 19.57 0.00 45.70 1.78
307 313 3.994729 GCAAACGCATGCACTCATA 57.005 47.368 19.57 0.00 45.70 2.15
308 314 4.874534 GCAAACGCATGCACTCAT 57.125 50.000 19.57 0.00 45.70 2.90
314 320 1.981254 AACATAGTGCAAACGCATGC 58.019 45.000 7.91 7.91 46.58 4.06
315 321 7.696035 TCTTAATTAACATAGTGCAAACGCATG 59.304 33.333 0.00 0.00 42.51 4.06
316 322 7.757526 TCTTAATTAACATAGTGCAAACGCAT 58.242 30.769 0.00 0.00 42.51 4.73
317 323 7.135089 TCTTAATTAACATAGTGCAAACGCA 57.865 32.000 0.00 0.00 36.95 5.24
318 324 8.442605 TTTCTTAATTAACATAGTGCAAACGC 57.557 30.769 0.00 0.00 0.00 4.84
345 351 9.810545 TTCTTCCGTTTTGATTGTATTCTTTTT 57.189 25.926 0.00 0.00 0.00 1.94
346 352 9.981114 ATTCTTCCGTTTTGATTGTATTCTTTT 57.019 25.926 0.00 0.00 0.00 2.27
350 356 7.971004 GGATTCTTCCGTTTTGATTGTATTC 57.029 36.000 0.00 0.00 30.72 1.75
365 371 0.744771 GTGAGGCCACGGATTCTTCC 60.745 60.000 5.01 0.00 38.81 3.46
366 372 0.036388 TGTGAGGCCACGGATTCTTC 60.036 55.000 5.01 0.00 46.06 2.87
375 381 1.160137 GACAGTTGATGTGAGGCCAC 58.840 55.000 5.01 0.00 44.17 5.01
382 388 5.349817 GTCACCTGATAAGACAGTTGATGTG 59.650 44.000 0.00 0.00 44.17 3.21
386 396 5.745312 ATGTCACCTGATAAGACAGTTGA 57.255 39.130 0.00 0.00 44.51 3.18
389 399 6.398918 GTTGTATGTCACCTGATAAGACAGT 58.601 40.000 0.00 0.00 44.51 3.55
391 401 5.407502 CGTTGTATGTCACCTGATAAGACA 58.592 41.667 0.00 0.00 45.26 3.41
401 411 2.267188 TCTACGCGTTGTATGTCACC 57.733 50.000 20.78 0.00 31.20 4.02
423 433 0.183014 TAGAGGATCCGCTTCCGTCT 59.817 55.000 23.89 12.58 40.94 4.18
424 434 1.030457 TTAGAGGATCCGCTTCCGTC 58.970 55.000 23.89 5.00 40.94 4.79
432 442 3.006323 CCTTGAGGATGTTAGAGGATCCG 59.994 52.174 5.98 0.00 42.73 4.18
462 472 0.314578 CGCATTTCGCTGTAGCTTCG 60.315 55.000 0.00 0.00 39.08 3.79
473 483 1.192757 TCGGTTTACACACGCATTTCG 59.807 47.619 0.00 0.00 45.38 3.46
474 484 2.953640 TCGGTTTACACACGCATTTC 57.046 45.000 0.00 0.00 0.00 2.17
481 491 3.116079 TCCCTTCTTCGGTTTACACAC 57.884 47.619 0.00 0.00 0.00 3.82
495 543 2.572104 ACAGTAACCCTGACATCCCTTC 59.428 50.000 0.00 0.00 44.49 3.46
644 1010 5.186198 CAAATAATTCGGAACAGAGGGAGT 58.814 41.667 0.00 0.00 0.00 3.85
645 1011 5.186198 ACAAATAATTCGGAACAGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
646 1012 5.045869 AGACAAATAATTCGGAACAGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
647 1013 5.186198 AGACAAATAATTCGGAACAGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
648 1014 6.403636 CCAAGACAAATAATTCGGAACAGAGG 60.404 42.308 0.00 0.00 0.00 3.69
649 1015 6.371548 TCCAAGACAAATAATTCGGAACAGAG 59.628 38.462 0.00 0.00 0.00 3.35
650 1016 6.234920 TCCAAGACAAATAATTCGGAACAGA 58.765 36.000 0.00 0.00 0.00 3.41
651 1017 6.494893 TCCAAGACAAATAATTCGGAACAG 57.505 37.500 0.00 0.00 0.00 3.16
652 1018 7.461182 AATCCAAGACAAATAATTCGGAACA 57.539 32.000 0.00 0.00 0.00 3.18
653 1019 7.812669 ACAAATCCAAGACAAATAATTCGGAAC 59.187 33.333 0.00 0.00 0.00 3.62
654 1020 7.891561 ACAAATCCAAGACAAATAATTCGGAA 58.108 30.769 0.00 0.00 0.00 4.30
655 1021 7.393234 AGACAAATCCAAGACAAATAATTCGGA 59.607 33.333 0.00 0.00 0.00 4.55
656 1022 7.538575 AGACAAATCCAAGACAAATAATTCGG 58.461 34.615 0.00 0.00 0.00 4.30
657 1023 9.708222 CTAGACAAATCCAAGACAAATAATTCG 57.292 33.333 0.00 0.00 0.00 3.34
662 1028 9.529325 CGTATCTAGACAAATCCAAGACAAATA 57.471 33.333 0.00 0.00 0.00 1.40
663 1029 7.495934 CCGTATCTAGACAAATCCAAGACAAAT 59.504 37.037 0.00 0.00 0.00 2.32
664 1030 6.816640 CCGTATCTAGACAAATCCAAGACAAA 59.183 38.462 0.00 0.00 0.00 2.83
665 1031 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
666 1032 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
667 1033 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
668 1034 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
669 1035 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
670 1036 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
671 1037 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
685 1051 9.128404 ACTAAAATGAGTGTAGATACATCCGTA 57.872 33.333 0.00 0.00 38.63 4.02
686 1052 7.921214 CACTAAAATGAGTGTAGATACATCCGT 59.079 37.037 0.00 0.00 41.67 4.69
687 1053 8.286996 CACTAAAATGAGTGTAGATACATCCG 57.713 38.462 0.00 0.00 41.67 4.18
700 1066 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
701 1067 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
702 1068 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
703 1069 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
704 1070 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
717 1083 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
718 1084 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
719 1085 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
720 1086 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
721 1087 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
722 1088 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
723 1089 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
730 1096 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
731 1097 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
732 1098 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
733 1099 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
734 1100 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
735 1101 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
736 1102 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
737 1103 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
738 1104 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
739 1105 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
740 1106 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
741 1107 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
742 1108 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
743 1109 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
744 1110 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
745 1111 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
746 1112 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
747 1113 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
748 1114 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
749 1115 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
750 1116 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
751 1117 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
752 1118 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
753 1119 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
754 1120 2.267174 TATCTACTCCCTCCGTTCCG 57.733 55.000 0.00 0.00 0.00 4.30
755 1121 3.764218 TCATATCTACTCCCTCCGTTCC 58.236 50.000 0.00 0.00 0.00 3.62
756 1122 5.071370 TCTTCATATCTACTCCCTCCGTTC 58.929 45.833 0.00 0.00 0.00 3.95
757 1123 5.063017 TCTTCATATCTACTCCCTCCGTT 57.937 43.478 0.00 0.00 0.00 4.44
758 1124 4.726035 TCTTCATATCTACTCCCTCCGT 57.274 45.455 0.00 0.00 0.00 4.69
759 1125 4.461081 CCTTCTTCATATCTACTCCCTCCG 59.539 50.000 0.00 0.00 0.00 4.63
760 1126 4.775253 CCCTTCTTCATATCTACTCCCTCC 59.225 50.000 0.00 0.00 0.00 4.30
761 1127 5.646215 TCCCTTCTTCATATCTACTCCCTC 58.354 45.833 0.00 0.00 0.00 4.30
762 1128 5.688220 TCCCTTCTTCATATCTACTCCCT 57.312 43.478 0.00 0.00 0.00 4.20
763 1129 5.782845 ACATCCCTTCTTCATATCTACTCCC 59.217 44.000 0.00 0.00 0.00 4.30
764 1130 6.495181 TGACATCCCTTCTTCATATCTACTCC 59.505 42.308 0.00 0.00 0.00 3.85
765 1131 7.531857 TGACATCCCTTCTTCATATCTACTC 57.468 40.000 0.00 0.00 0.00 2.59
766 1132 7.921041 TTGACATCCCTTCTTCATATCTACT 57.079 36.000 0.00 0.00 0.00 2.57
767 1133 8.153550 ACATTGACATCCCTTCTTCATATCTAC 58.846 37.037 0.00 0.00 0.00 2.59
768 1134 8.267620 ACATTGACATCCCTTCTTCATATCTA 57.732 34.615 0.00 0.00 0.00 1.98
769 1135 7.146715 ACATTGACATCCCTTCTTCATATCT 57.853 36.000 0.00 0.00 0.00 1.98
773 1139 6.962182 TCTAACATTGACATCCCTTCTTCAT 58.038 36.000 0.00 0.00 0.00 2.57
790 1156 2.700897 CTGGAACCGGATCCTCTAACAT 59.299 50.000 28.84 0.00 40.35 2.71
791 1157 2.108168 CTGGAACCGGATCCTCTAACA 58.892 52.381 28.84 8.98 40.35 2.41
796 1162 1.134371 CCTTTCTGGAACCGGATCCTC 60.134 57.143 28.84 10.19 40.35 3.71
797 1163 0.912486 CCTTTCTGGAACCGGATCCT 59.088 55.000 28.84 0.91 40.35 3.24
799 1165 1.407025 GGTCCTTTCTGGAACCGGATC 60.407 57.143 9.46 5.54 46.80 3.36
801 1167 2.063774 GGTCCTTTCTGGAACCGGA 58.936 57.895 9.46 0.00 46.80 5.14
802 1168 4.716003 GGTCCTTTCTGGAACCGG 57.284 61.111 0.00 0.00 46.80 5.28
808 1174 1.215647 CCGAGACGGTCCTTTCTGG 59.784 63.158 4.14 0.00 42.73 3.86
809 1175 4.891566 CCGAGACGGTCCTTTCTG 57.108 61.111 4.14 0.00 42.73 3.02
826 1192 1.587054 CCACCTGAGACGGAGACAC 59.413 63.158 0.00 0.00 0.00 3.67
841 1207 7.446625 TCGAGTTAGTAGAGTATAAATCCCCAC 59.553 40.741 0.00 0.00 0.00 4.61
1236 1700 0.675522 CCACGAACCCATACCCACAC 60.676 60.000 0.00 0.00 0.00 3.82
1248 1712 2.012948 GTCGTCCACGTCCACGAAC 61.013 63.158 17.64 10.04 46.08 3.95
1295 1759 2.511600 GGATGGTTCCTGTCGCCG 60.512 66.667 0.00 0.00 39.14 6.46
1320 1784 2.095668 CGGGAGATCGGAGATAACGAAG 60.096 54.545 0.00 0.00 45.12 3.79
1371 1835 2.034221 GTGCTGGTTGGGAGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
1387 1851 1.488705 TTGGGCTCGGTGATGAAGGT 61.489 55.000 0.00 0.00 0.00 3.50
1432 1896 4.163078 GGACAGATGGAAGATGAGGAGAAA 59.837 45.833 0.00 0.00 0.00 2.52
1433 1897 3.708631 GGACAGATGGAAGATGAGGAGAA 59.291 47.826 0.00 0.00 0.00 2.87
1442 1906 2.568956 CAGGAAGTGGACAGATGGAAGA 59.431 50.000 0.00 0.00 0.00 2.87
1469 1933 1.208052 GCCTGTAGATGAAGTGCTCCA 59.792 52.381 0.00 0.00 0.00 3.86
1470 1934 1.474143 GGCCTGTAGATGAAGTGCTCC 60.474 57.143 0.00 0.00 0.00 4.70
1521 1985 2.125552 CTGATGTCGGGAAGCGCA 60.126 61.111 11.47 0.00 0.00 6.09
1650 2117 4.002316 GCTTGGATCTGAAGATATGGAGC 58.998 47.826 8.65 0.00 34.37 4.70
1699 2169 1.139853 CCAAGAAGGAAGATCCGGGAG 59.860 57.143 0.00 0.00 42.75 4.30
1914 2415 1.515519 GCAGGTGACGTCGCGAATA 60.516 57.895 21.89 0.00 0.00 1.75
1923 2427 4.838152 CCATCGGGGCAGGTGACG 62.838 72.222 0.00 0.00 0.00 4.35
1956 2601 4.854291 GCATATAGATCTTCCAACTCGACG 59.146 45.833 0.00 0.00 0.00 5.12
2069 2715 0.673985 GAGCCTCCAACCAACAAACC 59.326 55.000 0.00 0.00 0.00 3.27
2244 2893 1.603171 AATGCCATCACCACACGCA 60.603 52.632 0.00 0.00 0.00 5.24
2584 3346 3.121738 TGCATCCAGTGATCTAGCATG 57.878 47.619 0.00 0.00 0.00 4.06
2650 3415 5.048507 GCCTTAAGTATTACTGTCGGAAGG 58.951 45.833 0.97 7.09 35.15 3.46
2724 3492 8.988934 GTAAGATATCATTTTAGACCATCGCAA 58.011 33.333 5.32 0.00 0.00 4.85
2773 3541 5.466058 CACATGTTGGCAAGCTAAATTTTGA 59.534 36.000 0.00 0.00 0.00 2.69
2855 3715 7.260603 CCAACATTTGAGAATATCCAACTTCC 58.739 38.462 0.00 0.00 0.00 3.46
2859 3719 6.212888 AGCCAACATTTGAGAATATCCAAC 57.787 37.500 0.00 0.00 0.00 3.77
2860 3720 6.632909 CAAGCCAACATTTGAGAATATCCAA 58.367 36.000 0.00 0.00 0.00 3.53
2862 3740 5.045872 GCAAGCCAACATTTGAGAATATCC 58.954 41.667 0.00 0.00 0.00 2.59
2865 3745 3.831333 TGGCAAGCCAACATTTGAGAATA 59.169 39.130 12.11 0.00 44.12 1.75
3469 4351 3.876156 GCAGGTGTTTTATCCCCAGCTTA 60.876 47.826 0.00 0.00 34.92 3.09
3519 4401 5.007724 GCCAAATGCCACAGAAGTATAGTAC 59.992 44.000 0.00 0.00 0.00 2.73
3542 4424 2.558359 AGTTGATTTTAGTGTGCTGGGC 59.442 45.455 0.00 0.00 0.00 5.36
3559 4441 3.845178 TGCGATGGTACTCAGTAAGTTG 58.155 45.455 0.00 0.00 39.55 3.16
3672 4554 0.178873 AGGAAGGAGGTAGTGCCCAA 60.179 55.000 0.00 0.00 38.26 4.12
3679 4561 2.435693 CCGCCCAGGAAGGAGGTAG 61.436 68.421 0.00 0.00 45.00 3.18
3730 4612 3.261897 CACATGTCCAAGAAGGTCCTACT 59.738 47.826 0.00 0.00 39.02 2.57
3806 4688 3.574614 GCAGTATTTTGTTGCCACGATT 58.425 40.909 0.00 0.00 31.79 3.34
3972 5278 1.860676 GAAACGAGTACTGTGGTGCA 58.139 50.000 0.00 0.00 0.00 4.57
3979 5285 0.914551 CGCCATCGAAACGAGTACTG 59.085 55.000 0.00 0.00 39.91 2.74
4005 5311 2.113139 CAGGAAACCCACCGCACT 59.887 61.111 0.00 0.00 0.00 4.40
4006 5312 2.983592 CCAGGAAACCCACCGCAC 60.984 66.667 0.00 0.00 0.00 5.34
4186 5492 7.437267 ACTTCAATTTTTGCTTCTCAATGTGAG 59.563 33.333 0.00 0.00 45.59 3.51
4187 5493 7.267128 ACTTCAATTTTTGCTTCTCAATGTGA 58.733 30.769 0.00 0.00 34.12 3.58
4271 5577 9.740239 CTCATCTCAAACTTTTTGATTTTCTGA 57.260 29.630 1.94 0.00 0.00 3.27
4381 5687 0.798776 CGGAAGTTTGCTACCTGCTG 59.201 55.000 0.00 0.00 43.37 4.41
4414 5722 3.118811 TGGGACAAAAGGCTTTCTTGTTG 60.119 43.478 13.76 9.85 35.55 3.33
4415 5723 3.103742 TGGGACAAAAGGCTTTCTTGTT 58.896 40.909 13.76 0.00 35.55 2.83
4448 5756 4.846367 ACATAAGCATCATCCCTAGCCTAA 59.154 41.667 0.00 0.00 0.00 2.69
4528 5838 5.279960 GCCAAACTGGGAAGTGGAATAAAAT 60.280 40.000 0.00 0.00 38.19 1.82
4641 5951 7.054124 ACCCGCCCAATATAATACATAAGATG 58.946 38.462 0.00 0.00 0.00 2.90
4642 5952 7.208064 ACCCGCCCAATATAATACATAAGAT 57.792 36.000 0.00 0.00 0.00 2.40
4643 5953 6.630203 ACCCGCCCAATATAATACATAAGA 57.370 37.500 0.00 0.00 0.00 2.10
4644 5954 8.974060 AATACCCGCCCAATATAATACATAAG 57.026 34.615 0.00 0.00 0.00 1.73
4645 5955 8.774183 AGAATACCCGCCCAATATAATACATAA 58.226 33.333 0.00 0.00 0.00 1.90
4646 5956 8.326765 AGAATACCCGCCCAATATAATACATA 57.673 34.615 0.00 0.00 0.00 2.29
4647 5957 7.208064 AGAATACCCGCCCAATATAATACAT 57.792 36.000 0.00 0.00 0.00 2.29
4648 5958 6.630203 AGAATACCCGCCCAATATAATACA 57.370 37.500 0.00 0.00 0.00 2.29
4752 6062 4.569653 CCCTCCATCCCAAAATAAGTGTCA 60.570 45.833 0.00 0.00 0.00 3.58
4894 6204 8.739972 TCATCTAGGCTTTAATTTTCTTTCCAC 58.260 33.333 0.00 0.00 0.00 4.02
4944 6254 0.651031 GAGTTATTCCGCGCTCAACC 59.349 55.000 5.56 0.00 0.00 3.77
5154 6467 2.815589 GCCAGACTCAAAAGGACATGGT 60.816 50.000 0.00 0.00 0.00 3.55
5158 6471 1.211703 TGTGCCAGACTCAAAAGGACA 59.788 47.619 0.00 0.00 0.00 4.02
5304 6617 1.160137 ATTGTTCAAGCTCTCACCGC 58.840 50.000 0.00 0.00 0.00 5.68
5305 6618 2.159787 CGAATTGTTCAAGCTCTCACCG 60.160 50.000 0.00 0.00 0.00 4.94
5483 6797 1.486211 GGCTAGCCCAGTTGTCTAGA 58.514 55.000 24.19 0.00 33.44 2.43
5751 7067 4.021456 GGACCCAACCCTTTAACATGAAAG 60.021 45.833 0.00 0.00 36.38 2.62
6208 7524 8.713271 GCAATATTAGACAAAGGAGCTATGTAC 58.287 37.037 0.00 0.00 0.00 2.90
6342 7751 4.178545 ACATGCAACAAAGATAACAGGC 57.821 40.909 0.00 0.00 0.00 4.85
6413 7822 6.903883 AATTGTAGAATTAGCAGGTGTACG 57.096 37.500 0.00 0.00 29.49 3.67
6459 7868 1.612395 GCTCACAGGAGAGAGGTGGG 61.612 65.000 0.00 0.00 44.26 4.61
7436 8850 7.732222 AGAAACTCAGGATTCTCTATGTTCT 57.268 36.000 0.00 0.00 30.37 3.01
7545 8959 8.916654 CACAAATAGACTGTAGAGTTTACACAG 58.083 37.037 0.00 0.00 44.20 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.