Multiple sequence alignment - TraesCS7B01G228800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G228800 chr7B 100.000 2477 0 0 1 2477 428932972 428935448 0.000000e+00 4575
1 TraesCS7B01G228800 chr7B 98.007 1505 29 1 1 1504 663195491 663193987 0.000000e+00 2612
2 TraesCS7B01G228800 chr7B 97.995 1496 29 1 1 1496 131366966 131368460 0.000000e+00 2595
3 TraesCS7B01G228800 chr7B 96.220 1508 56 1 1 1507 713391744 713393251 0.000000e+00 2468
4 TraesCS7B01G228800 chr7B 97.502 1281 30 2 226 1505 45326208 45327487 0.000000e+00 2187
5 TraesCS7B01G228800 chr7B 94.186 774 45 0 1496 2269 120455354 120456127 0.000000e+00 1181
6 TraesCS7B01G228800 chr7B 94.293 771 40 4 1502 2271 562988352 562987585 0.000000e+00 1177
7 TraesCS7B01G228800 chr7B 94.271 768 44 0 1502 2269 31538645 31537878 0.000000e+00 1175
8 TraesCS7B01G228800 chr4B 97.613 1508 32 2 1 1504 647594576 647596083 0.000000e+00 2582
9 TraesCS7B01G228800 chr2B 95.479 1504 68 0 1 1504 768545520 768547023 0.000000e+00 2401
10 TraesCS7B01G228800 chr2B 94.271 768 43 1 1502 2269 602232028 602231262 0.000000e+00 1173
11 TraesCS7B01G228800 chr2B 75.839 894 198 16 2 889 736413126 736414007 2.920000e-119 438
12 TraesCS7B01G228800 chr1A 93.883 1504 91 1 1 1504 12127823 12126321 0.000000e+00 2266
13 TraesCS7B01G228800 chr2A 92.890 1505 93 2 1 1504 728563708 728565199 0.000000e+00 2174
14 TraesCS7B01G228800 chr7A 87.774 1505 177 7 1 1503 654919332 654917833 0.000000e+00 1753
15 TraesCS7B01G228800 chr7A 83.410 434 72 0 1 434 198213388 198213821 1.070000e-108 403
16 TraesCS7B01G228800 chr7A 82.313 294 51 1 1 293 279175859 279175566 1.140000e-63 254
17 TraesCS7B01G228800 chr6A 94.040 1141 68 0 364 1504 91429682 91430822 0.000000e+00 1731
18 TraesCS7B01G228800 chr5B 94.798 769 37 3 1502 2269 631784156 631783390 0.000000e+00 1195
19 TraesCS7B01G228800 chr3B 94.785 767 37 3 1503 2269 637052314 637051551 0.000000e+00 1192
20 TraesCS7B01G228800 chr3B 77.609 1514 319 15 1 1503 477881962 477880458 0.000000e+00 900
21 TraesCS7B01G228800 chr3A 94.668 769 38 3 1502 2269 65351954 65351188 0.000000e+00 1190
22 TraesCS7B01G228800 chr3A 82.769 325 54 2 1 324 416168575 416168898 3.120000e-74 289
23 TraesCS7B01G228800 chr6B 93.614 783 44 5 1496 2275 586664509 586665288 0.000000e+00 1164
24 TraesCS7B01G228800 chr1D 93.806 775 45 3 1496 2269 492905418 492906190 0.000000e+00 1162


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G228800 chr7B 428932972 428935448 2476 False 4575 4575 100.000 1 2477 1 chr7B.!!$F4 2476
1 TraesCS7B01G228800 chr7B 663193987 663195491 1504 True 2612 2612 98.007 1 1504 1 chr7B.!!$R3 1503
2 TraesCS7B01G228800 chr7B 131366966 131368460 1494 False 2595 2595 97.995 1 1496 1 chr7B.!!$F3 1495
3 TraesCS7B01G228800 chr7B 713391744 713393251 1507 False 2468 2468 96.220 1 1507 1 chr7B.!!$F5 1506
4 TraesCS7B01G228800 chr7B 45326208 45327487 1279 False 2187 2187 97.502 226 1505 1 chr7B.!!$F1 1279
5 TraesCS7B01G228800 chr7B 120455354 120456127 773 False 1181 1181 94.186 1496 2269 1 chr7B.!!$F2 773
6 TraesCS7B01G228800 chr7B 562987585 562988352 767 True 1177 1177 94.293 1502 2271 1 chr7B.!!$R2 769
7 TraesCS7B01G228800 chr7B 31537878 31538645 767 True 1175 1175 94.271 1502 2269 1 chr7B.!!$R1 767
8 TraesCS7B01G228800 chr4B 647594576 647596083 1507 False 2582 2582 97.613 1 1504 1 chr4B.!!$F1 1503
9 TraesCS7B01G228800 chr2B 768545520 768547023 1503 False 2401 2401 95.479 1 1504 1 chr2B.!!$F2 1503
10 TraesCS7B01G228800 chr2B 602231262 602232028 766 True 1173 1173 94.271 1502 2269 1 chr2B.!!$R1 767
11 TraesCS7B01G228800 chr2B 736413126 736414007 881 False 438 438 75.839 2 889 1 chr2B.!!$F1 887
12 TraesCS7B01G228800 chr1A 12126321 12127823 1502 True 2266 2266 93.883 1 1504 1 chr1A.!!$R1 1503
13 TraesCS7B01G228800 chr2A 728563708 728565199 1491 False 2174 2174 92.890 1 1504 1 chr2A.!!$F1 1503
14 TraesCS7B01G228800 chr7A 654917833 654919332 1499 True 1753 1753 87.774 1 1503 1 chr7A.!!$R2 1502
15 TraesCS7B01G228800 chr6A 91429682 91430822 1140 False 1731 1731 94.040 364 1504 1 chr6A.!!$F1 1140
16 TraesCS7B01G228800 chr5B 631783390 631784156 766 True 1195 1195 94.798 1502 2269 1 chr5B.!!$R1 767
17 TraesCS7B01G228800 chr3B 637051551 637052314 763 True 1192 1192 94.785 1503 2269 1 chr3B.!!$R2 766
18 TraesCS7B01G228800 chr3B 477880458 477881962 1504 True 900 900 77.609 1 1503 1 chr3B.!!$R1 1502
19 TraesCS7B01G228800 chr3A 65351188 65351954 766 True 1190 1190 94.668 1502 2269 1 chr3A.!!$R1 767
20 TraesCS7B01G228800 chr6B 586664509 586665288 779 False 1164 1164 93.614 1496 2275 1 chr6B.!!$F1 779
21 TraesCS7B01G228800 chr1D 492905418 492906190 772 False 1162 1162 93.806 1496 2269 1 chr1D.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 286 4.340617 TCCAGTTATGAATTGTTGGGACC 58.659 43.478 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2272 0.250338 AAGTCGTGAGGCCAACTTCC 60.25 55.0 5.01 0.0 35.23 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 8.633075 CTTGATGAGTGCAAGTTTAAAGAAAA 57.367 30.769 0.00 0.00 38.29 2.29
280 286 4.340617 TCCAGTTATGAATTGTTGGGACC 58.659 43.478 0.00 0.00 0.00 4.46
773 782 7.233348 AGGAGAAGCAATCCTTGAATTTTTACA 59.767 33.333 0.00 0.00 45.13 2.41
950 961 9.418045 GGCAATAACAACAAACTATGTAAATGT 57.582 29.630 0.00 0.00 42.99 2.71
1038 1049 6.371548 AGCTAAATACTGATGCTTCGTTTGAA 59.628 34.615 0.00 0.00 0.00 2.69
1138 1149 1.596603 TGACTGGTGTGCAGATGTTG 58.403 50.000 0.00 0.00 0.00 3.33
1162 1173 0.331616 AGCGGAAGTTTTGGCCCTAT 59.668 50.000 0.00 0.00 0.00 2.57
1189 1200 4.199310 TGGATTATTACTTGCACAGAGGC 58.801 43.478 0.00 0.00 0.00 4.70
1419 1431 9.184523 TCCGTAACAAATGAATATTTTGAGGAT 57.815 29.630 5.56 0.00 34.34 3.24
1613 1626 1.251251 GCCCAAATGCAAGAGAGTGT 58.749 50.000 0.00 0.00 0.00 3.55
1676 1689 1.331399 TGGGGCATCGTTCGATACCA 61.331 55.000 21.09 18.28 31.37 3.25
1702 1715 3.331889 ACTGTCATGGGATGAAAGGAAGT 59.668 43.478 8.33 0.00 46.72 3.01
1773 1786 5.392487 CGAGGACGAGCATGATGATAGTATT 60.392 44.000 0.00 0.00 42.66 1.89
1851 1864 2.821969 GGCCATGTTTGATGAGTTCTGT 59.178 45.455 0.00 0.00 0.00 3.41
2241 2256 6.825213 CAGAATCCAGACAAAATAGACATCCA 59.175 38.462 0.00 0.00 0.00 3.41
2257 2272 3.952675 CATTTGGGATCGCGCGGG 61.953 66.667 31.69 18.21 0.00 6.13
2272 2287 2.359975 GGGGAAGTTGGCCTCACG 60.360 66.667 3.32 0.00 0.00 4.35
2273 2288 2.747686 GGGAAGTTGGCCTCACGA 59.252 61.111 3.32 0.00 0.00 4.35
2274 2289 1.671379 GGGAAGTTGGCCTCACGAC 60.671 63.158 3.32 0.81 0.00 4.34
2275 2290 1.371558 GGAAGTTGGCCTCACGACT 59.628 57.895 3.32 0.00 36.66 4.18
2276 2291 0.250338 GGAAGTTGGCCTCACGACTT 60.250 55.000 3.32 6.52 45.42 3.01
2277 2292 0.868406 GAAGTTGGCCTCACGACTTG 59.132 55.000 3.32 0.00 43.39 3.16
2278 2293 1.166531 AAGTTGGCCTCACGACTTGC 61.167 55.000 3.32 0.00 42.14 4.01
2279 2294 1.598130 GTTGGCCTCACGACTTGCT 60.598 57.895 3.32 0.00 0.00 3.91
2280 2295 1.148273 TTGGCCTCACGACTTGCTT 59.852 52.632 3.32 0.00 0.00 3.91
2281 2296 0.465460 TTGGCCTCACGACTTGCTTT 60.465 50.000 3.32 0.00 0.00 3.51
2282 2297 1.165907 TGGCCTCACGACTTGCTTTG 61.166 55.000 3.32 0.00 0.00 2.77
2283 2298 1.166531 GGCCTCACGACTTGCTTTGT 61.167 55.000 0.00 0.00 0.00 2.83
2284 2299 1.508632 GCCTCACGACTTGCTTTGTA 58.491 50.000 0.00 0.00 0.00 2.41
2285 2300 1.194772 GCCTCACGACTTGCTTTGTAC 59.805 52.381 0.00 0.00 0.00 2.90
2286 2301 2.755650 CCTCACGACTTGCTTTGTACT 58.244 47.619 0.00 0.00 0.00 2.73
2287 2302 3.131396 CCTCACGACTTGCTTTGTACTT 58.869 45.455 0.00 0.00 0.00 2.24
2288 2303 3.560068 CCTCACGACTTGCTTTGTACTTT 59.440 43.478 0.00 0.00 0.00 2.66
2289 2304 4.318831 CCTCACGACTTGCTTTGTACTTTC 60.319 45.833 0.00 0.00 0.00 2.62
2290 2305 4.185394 TCACGACTTGCTTTGTACTTTCA 58.815 39.130 0.00 0.00 0.00 2.69
2291 2306 4.814234 TCACGACTTGCTTTGTACTTTCAT 59.186 37.500 0.00 0.00 0.00 2.57
2292 2307 4.905866 CACGACTTGCTTTGTACTTTCATG 59.094 41.667 0.00 0.00 0.00 3.07
2293 2308 3.908382 CGACTTGCTTTGTACTTTCATGC 59.092 43.478 0.00 0.00 0.00 4.06
2294 2309 4.229876 GACTTGCTTTGTACTTTCATGCC 58.770 43.478 0.00 0.00 0.00 4.40
2295 2310 3.005791 ACTTGCTTTGTACTTTCATGCCC 59.994 43.478 0.00 0.00 0.00 5.36
2296 2311 2.591923 TGCTTTGTACTTTCATGCCCA 58.408 42.857 0.00 0.00 0.00 5.36
2297 2312 3.164268 TGCTTTGTACTTTCATGCCCAT 58.836 40.909 0.00 0.00 0.00 4.00
2298 2313 3.056678 TGCTTTGTACTTTCATGCCCATG 60.057 43.478 1.86 1.86 40.09 3.66
2299 2314 3.056607 GCTTTGTACTTTCATGCCCATGT 60.057 43.478 8.02 0.00 39.72 3.21
2300 2315 4.561326 GCTTTGTACTTTCATGCCCATGTT 60.561 41.667 8.02 0.00 39.72 2.71
2301 2316 4.517952 TTGTACTTTCATGCCCATGTTG 57.482 40.909 8.02 3.24 39.72 3.33
2302 2317 3.495331 TGTACTTTCATGCCCATGTTGT 58.505 40.909 8.02 7.97 39.72 3.32
2303 2318 3.255395 TGTACTTTCATGCCCATGTTGTG 59.745 43.478 8.02 1.49 39.72 3.33
2304 2319 2.318908 ACTTTCATGCCCATGTTGTGT 58.681 42.857 8.02 2.00 39.72 3.72
2305 2320 2.699846 ACTTTCATGCCCATGTTGTGTT 59.300 40.909 8.02 0.00 39.72 3.32
2306 2321 2.816204 TTCATGCCCATGTTGTGTTG 57.184 45.000 8.02 0.00 39.72 3.33
2307 2322 1.702182 TCATGCCCATGTTGTGTTGT 58.298 45.000 8.02 0.00 39.72 3.32
2308 2323 2.868899 TCATGCCCATGTTGTGTTGTA 58.131 42.857 8.02 0.00 39.72 2.41
2309 2324 3.429492 TCATGCCCATGTTGTGTTGTAT 58.571 40.909 8.02 0.00 39.72 2.29
2310 2325 3.193056 TCATGCCCATGTTGTGTTGTATG 59.807 43.478 8.02 0.00 39.72 2.39
2311 2326 2.591923 TGCCCATGTTGTGTTGTATGT 58.408 42.857 0.00 0.00 0.00 2.29
2312 2327 2.961741 TGCCCATGTTGTGTTGTATGTT 59.038 40.909 0.00 0.00 0.00 2.71
2313 2328 3.386078 TGCCCATGTTGTGTTGTATGTTT 59.614 39.130 0.00 0.00 0.00 2.83
2314 2329 3.740321 GCCCATGTTGTGTTGTATGTTTG 59.260 43.478 0.00 0.00 0.00 2.93
2315 2330 3.740321 CCCATGTTGTGTTGTATGTTTGC 59.260 43.478 0.00 0.00 0.00 3.68
2316 2331 4.501229 CCCATGTTGTGTTGTATGTTTGCT 60.501 41.667 0.00 0.00 0.00 3.91
2317 2332 5.049167 CCATGTTGTGTTGTATGTTTGCTT 58.951 37.500 0.00 0.00 0.00 3.91
2318 2333 5.050904 CCATGTTGTGTTGTATGTTTGCTTG 60.051 40.000 0.00 0.00 0.00 4.01
2319 2334 5.065704 TGTTGTGTTGTATGTTTGCTTGT 57.934 34.783 0.00 0.00 0.00 3.16
2320 2335 5.473931 TGTTGTGTTGTATGTTTGCTTGTT 58.526 33.333 0.00 0.00 0.00 2.83
2321 2336 6.621613 TGTTGTGTTGTATGTTTGCTTGTTA 58.378 32.000 0.00 0.00 0.00 2.41
2322 2337 6.749578 TGTTGTGTTGTATGTTTGCTTGTTAG 59.250 34.615 0.00 0.00 0.00 2.34
2337 2352 5.891451 GCTTGTTAGCCCTAAAATGTAAGG 58.109 41.667 0.00 0.00 41.74 2.69
2338 2353 5.417894 GCTTGTTAGCCCTAAAATGTAAGGT 59.582 40.000 0.00 0.00 41.74 3.50
2339 2354 6.625081 GCTTGTTAGCCCTAAAATGTAAGGTG 60.625 42.308 0.00 0.00 41.74 4.00
2340 2355 5.883180 TGTTAGCCCTAAAATGTAAGGTGT 58.117 37.500 0.00 0.00 0.00 4.16
2341 2356 6.308566 TGTTAGCCCTAAAATGTAAGGTGTT 58.691 36.000 0.00 0.00 0.00 3.32
2342 2357 6.207810 TGTTAGCCCTAAAATGTAAGGTGTTG 59.792 38.462 0.00 0.00 0.00 3.33
2343 2358 4.086457 AGCCCTAAAATGTAAGGTGTTGG 58.914 43.478 0.00 0.00 0.00 3.77
2344 2359 3.830178 GCCCTAAAATGTAAGGTGTTGGT 59.170 43.478 0.00 0.00 0.00 3.67
2345 2360 4.321675 GCCCTAAAATGTAAGGTGTTGGTG 60.322 45.833 0.00 0.00 0.00 4.17
2346 2361 5.074115 CCCTAAAATGTAAGGTGTTGGTGA 58.926 41.667 0.00 0.00 0.00 4.02
2347 2362 5.536916 CCCTAAAATGTAAGGTGTTGGTGAA 59.463 40.000 0.00 0.00 0.00 3.18
2348 2363 6.041069 CCCTAAAATGTAAGGTGTTGGTGAAA 59.959 38.462 0.00 0.00 0.00 2.69
2349 2364 7.418025 CCCTAAAATGTAAGGTGTTGGTGAAAA 60.418 37.037 0.00 0.00 0.00 2.29
2350 2365 8.147704 CCTAAAATGTAAGGTGTTGGTGAAAAT 58.852 33.333 0.00 0.00 0.00 1.82
2353 2368 9.892130 AAAATGTAAGGTGTTGGTGAAAATAAA 57.108 25.926 0.00 0.00 0.00 1.40
2356 2371 8.879342 TGTAAGGTGTTGGTGAAAATAAATTG 57.121 30.769 0.00 0.00 0.00 2.32
2357 2372 7.928706 TGTAAGGTGTTGGTGAAAATAAATTGG 59.071 33.333 0.00 0.00 0.00 3.16
2358 2373 6.493189 AGGTGTTGGTGAAAATAAATTGGT 57.507 33.333 0.00 0.00 0.00 3.67
2359 2374 6.894682 AGGTGTTGGTGAAAATAAATTGGTT 58.105 32.000 0.00 0.00 0.00 3.67
2360 2375 7.342581 AGGTGTTGGTGAAAATAAATTGGTTT 58.657 30.769 0.00 0.00 0.00 3.27
2361 2376 7.831690 AGGTGTTGGTGAAAATAAATTGGTTTT 59.168 29.630 1.85 1.85 0.00 2.43
2362 2377 8.462811 GGTGTTGGTGAAAATAAATTGGTTTTT 58.537 29.630 3.45 0.00 0.00 1.94
2392 2407 5.955058 GCATTTGCGCTTATTTTGATAGTG 58.045 37.500 9.73 0.00 0.00 2.74
2393 2408 5.555069 GCATTTGCGCTTATTTTGATAGTGC 60.555 40.000 9.73 0.00 43.72 4.40
2395 2410 4.898829 TGCGCTTATTTTGATAGTGCAT 57.101 36.364 9.73 0.00 46.81 3.96
2397 2412 6.558771 TGCGCTTATTTTGATAGTGCATAT 57.441 33.333 9.73 0.00 46.81 1.78
2398 2413 6.372981 TGCGCTTATTTTGATAGTGCATATG 58.627 36.000 9.73 0.00 46.81 1.78
2399 2414 6.017192 TGCGCTTATTTTGATAGTGCATATGT 60.017 34.615 9.73 0.00 46.81 2.29
2400 2415 6.857964 GCGCTTATTTTGATAGTGCATATGTT 59.142 34.615 0.00 0.00 43.12 2.71
2401 2416 7.379529 GCGCTTATTTTGATAGTGCATATGTTT 59.620 33.333 0.00 0.00 43.12 2.83
2402 2417 9.877137 CGCTTATTTTGATAGTGCATATGTTTA 57.123 29.630 4.29 0.00 0.00 2.01
2409 2424 7.962964 TGATAGTGCATATGTTTACTTAGCC 57.037 36.000 4.29 0.00 0.00 3.93
2410 2425 7.505258 TGATAGTGCATATGTTTACTTAGCCA 58.495 34.615 4.29 2.01 0.00 4.75
2411 2426 7.441157 TGATAGTGCATATGTTTACTTAGCCAC 59.559 37.037 4.29 0.03 0.00 5.01
2412 2427 4.881850 AGTGCATATGTTTACTTAGCCACC 59.118 41.667 4.29 0.00 0.00 4.61
2413 2428 4.881850 GTGCATATGTTTACTTAGCCACCT 59.118 41.667 4.29 0.00 0.00 4.00
2414 2429 5.007724 GTGCATATGTTTACTTAGCCACCTC 59.992 44.000 4.29 0.00 0.00 3.85
2415 2430 5.104527 TGCATATGTTTACTTAGCCACCTCT 60.105 40.000 4.29 0.00 0.00 3.69
2416 2431 5.237344 GCATATGTTTACTTAGCCACCTCTG 59.763 44.000 4.29 0.00 0.00 3.35
2417 2432 6.582636 CATATGTTTACTTAGCCACCTCTGA 58.417 40.000 0.00 0.00 0.00 3.27
2418 2433 5.700402 ATGTTTACTTAGCCACCTCTGAT 57.300 39.130 0.00 0.00 0.00 2.90
2419 2434 6.808321 ATGTTTACTTAGCCACCTCTGATA 57.192 37.500 0.00 0.00 0.00 2.15
2420 2435 5.974108 TGTTTACTTAGCCACCTCTGATAC 58.026 41.667 0.00 0.00 0.00 2.24
2421 2436 5.720041 TGTTTACTTAGCCACCTCTGATACT 59.280 40.000 0.00 0.00 0.00 2.12
2422 2437 5.854010 TTACTTAGCCACCTCTGATACTG 57.146 43.478 0.00 0.00 0.00 2.74
2423 2438 3.982516 ACTTAGCCACCTCTGATACTGA 58.017 45.455 0.00 0.00 0.00 3.41
2424 2439 4.353777 ACTTAGCCACCTCTGATACTGAA 58.646 43.478 0.00 0.00 0.00 3.02
2425 2440 4.777896 ACTTAGCCACCTCTGATACTGAAA 59.222 41.667 0.00 0.00 0.00 2.69
2426 2441 5.426833 ACTTAGCCACCTCTGATACTGAAAT 59.573 40.000 0.00 0.00 0.00 2.17
2427 2442 6.611642 ACTTAGCCACCTCTGATACTGAAATA 59.388 38.462 0.00 0.00 0.00 1.40
2428 2443 5.543507 AGCCACCTCTGATACTGAAATAG 57.456 43.478 0.00 0.00 0.00 1.73
2429 2444 4.346418 AGCCACCTCTGATACTGAAATAGG 59.654 45.833 0.00 0.00 0.00 2.57
2430 2445 4.636249 CCACCTCTGATACTGAAATAGGC 58.364 47.826 0.00 0.00 0.00 3.93
2431 2446 4.101585 CCACCTCTGATACTGAAATAGGCA 59.898 45.833 0.00 0.00 0.00 4.75
2432 2447 5.053145 CACCTCTGATACTGAAATAGGCAC 58.947 45.833 0.00 0.00 0.00 5.01
2433 2448 4.101741 ACCTCTGATACTGAAATAGGCACC 59.898 45.833 0.00 0.00 0.00 5.01
2434 2449 4.302455 CTCTGATACTGAAATAGGCACCG 58.698 47.826 0.00 0.00 0.00 4.94
2435 2450 3.704566 TCTGATACTGAAATAGGCACCGT 59.295 43.478 0.00 0.00 0.00 4.83
2436 2451 3.792401 TGATACTGAAATAGGCACCGTG 58.208 45.455 0.00 0.00 0.00 4.94
2437 2452 2.684001 TACTGAAATAGGCACCGTGG 57.316 50.000 0.00 0.00 0.00 4.94
2438 2453 0.981183 ACTGAAATAGGCACCGTGGA 59.019 50.000 0.00 0.00 0.00 4.02
2439 2454 1.066143 ACTGAAATAGGCACCGTGGAG 60.066 52.381 0.00 0.00 0.00 3.86
2440 2455 0.392461 TGAAATAGGCACCGTGGAGC 60.392 55.000 0.00 0.00 0.00 4.70
2441 2456 0.392461 GAAATAGGCACCGTGGAGCA 60.392 55.000 10.46 0.00 33.44 4.26
2442 2457 0.037590 AAATAGGCACCGTGGAGCAA 59.962 50.000 10.46 0.00 33.44 3.91
2443 2458 0.037590 AATAGGCACCGTGGAGCAAA 59.962 50.000 10.46 0.00 33.44 3.68
2444 2459 0.037590 ATAGGCACCGTGGAGCAAAA 59.962 50.000 10.46 0.00 33.44 2.44
2445 2460 0.887387 TAGGCACCGTGGAGCAAAAC 60.887 55.000 10.46 0.00 33.44 2.43
2446 2461 2.335011 GCACCGTGGAGCAAAACC 59.665 61.111 3.30 0.00 0.00 3.27
2447 2462 3.039134 CACCGTGGAGCAAAACCC 58.961 61.111 0.00 0.00 0.00 4.11
2448 2463 2.593436 ACCGTGGAGCAAAACCCG 60.593 61.111 0.00 0.00 0.00 5.28
2449 2464 3.361977 CCGTGGAGCAAAACCCGG 61.362 66.667 0.00 0.00 35.93 5.73
2450 2465 2.593436 CGTGGAGCAAAACCCGGT 60.593 61.111 0.00 0.00 0.00 5.28
2451 2466 2.190841 CGTGGAGCAAAACCCGGTT 61.191 57.895 0.00 0.00 0.00 4.44
2452 2467 1.730451 CGTGGAGCAAAACCCGGTTT 61.730 55.000 9.92 9.92 37.34 3.27
2453 2468 1.320507 GTGGAGCAAAACCCGGTTTA 58.679 50.000 16.03 0.00 34.43 2.01
2454 2469 1.268625 GTGGAGCAAAACCCGGTTTAG 59.731 52.381 16.03 0.00 34.43 1.85
2455 2470 1.143277 TGGAGCAAAACCCGGTTTAGA 59.857 47.619 16.03 0.00 34.43 2.10
2456 2471 1.810755 GGAGCAAAACCCGGTTTAGAG 59.189 52.381 16.03 10.17 34.43 2.43
2457 2472 2.501261 GAGCAAAACCCGGTTTAGAGT 58.499 47.619 16.03 1.77 34.43 3.24
2458 2473 2.225727 GAGCAAAACCCGGTTTAGAGTG 59.774 50.000 16.03 11.35 34.43 3.51
2459 2474 1.951602 GCAAAACCCGGTTTAGAGTGT 59.048 47.619 16.03 0.00 34.43 3.55
2460 2475 2.031420 GCAAAACCCGGTTTAGAGTGTC 60.031 50.000 16.03 4.15 34.43 3.67
2461 2476 3.207778 CAAAACCCGGTTTAGAGTGTCA 58.792 45.455 16.03 0.00 34.43 3.58
2462 2477 2.833631 AACCCGGTTTAGAGTGTCAG 57.166 50.000 0.00 0.00 0.00 3.51
2463 2478 1.713297 ACCCGGTTTAGAGTGTCAGT 58.287 50.000 0.00 0.00 0.00 3.41
2464 2479 2.044758 ACCCGGTTTAGAGTGTCAGTT 58.955 47.619 0.00 0.00 0.00 3.16
2465 2480 2.224209 ACCCGGTTTAGAGTGTCAGTTG 60.224 50.000 0.00 0.00 0.00 3.16
2466 2481 2.036733 CCCGGTTTAGAGTGTCAGTTGA 59.963 50.000 0.00 0.00 0.00 3.18
2467 2482 3.306780 CCCGGTTTAGAGTGTCAGTTGAT 60.307 47.826 0.00 0.00 0.00 2.57
2468 2483 4.315803 CCGGTTTAGAGTGTCAGTTGATT 58.684 43.478 0.00 0.00 0.00 2.57
2469 2484 4.755123 CCGGTTTAGAGTGTCAGTTGATTT 59.245 41.667 0.00 0.00 0.00 2.17
2470 2485 5.929992 CCGGTTTAGAGTGTCAGTTGATTTA 59.070 40.000 0.00 0.00 0.00 1.40
2471 2486 6.594159 CCGGTTTAGAGTGTCAGTTGATTTAT 59.406 38.462 0.00 0.00 0.00 1.40
2472 2487 7.201530 CCGGTTTAGAGTGTCAGTTGATTTATC 60.202 40.741 0.00 0.00 0.00 1.75
2473 2488 7.330946 CGGTTTAGAGTGTCAGTTGATTTATCA 59.669 37.037 0.00 0.00 34.44 2.15
2474 2489 8.660373 GGTTTAGAGTGTCAGTTGATTTATCAG 58.340 37.037 0.00 0.00 38.19 2.90
2475 2490 9.209175 GTTTAGAGTGTCAGTTGATTTATCAGT 57.791 33.333 0.00 0.00 38.19 3.41
2476 2491 8.763049 TTAGAGTGTCAGTTGATTTATCAGTG 57.237 34.615 0.00 0.00 38.19 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.922740 TGCCAAGTAAAGGACGAACT 57.077 45.000 0.00 0.00 0.00 3.01
280 286 6.254157 CACAAAGTTTGTCTCACCAAATCTTG 59.746 38.462 18.34 0.00 43.23 3.02
577 583 1.014352 CTATTGGCCAGTGTAACGCC 58.986 55.000 11.69 1.47 45.86 5.68
773 782 6.606395 AGCTATTTCATTTTCTGGCTTCAGAT 59.394 34.615 0.00 0.00 45.83 2.90
993 1004 3.809905 CTTAACAAGTCCCATAGGAGGC 58.190 50.000 0.00 0.00 45.21 4.70
1038 1049 2.764010 TGTACCACTAAGCCGATCATGT 59.236 45.455 0.00 0.00 0.00 3.21
1138 1149 0.317854 GCCAAAACTTCCGCTGTCAC 60.318 55.000 0.00 0.00 0.00 3.67
1162 1173 6.007076 TCTGTGCAAGTAATAATCCAAACCA 58.993 36.000 0.00 0.00 0.00 3.67
1189 1200 1.669115 CTAGGCGATTGCATCCCGG 60.669 63.158 7.38 0.00 45.35 5.73
1419 1431 4.478317 AGAGGTACAATTTCATCCATGGGA 59.522 41.667 13.02 0.00 35.55 4.37
1676 1689 2.812836 TTCATCCCATGACAGTGCAT 57.187 45.000 0.00 0.00 39.39 3.96
1702 1715 1.425066 AGCAGTCATCACCTCCCAAAA 59.575 47.619 0.00 0.00 0.00 2.44
1773 1786 7.498570 CCTTGAAAATCAAATCCTTGGTCAAAA 59.501 33.333 0.00 0.00 35.73 2.44
1851 1864 0.390340 GCAGCTCACGATGGAACTGA 60.390 55.000 9.78 0.00 33.80 3.41
2065 2078 7.660112 TCATATGAAAACAAGTTTGCATGTCT 58.340 30.769 23.22 9.66 45.72 3.41
2175 2189 4.988716 TCGTGTCCGGGCCTGTCT 62.989 66.667 11.58 0.00 33.95 3.41
2224 2238 6.493166 TCCCAAATGGATGTCTATTTTGTCT 58.507 36.000 0.00 0.00 38.61 3.41
2257 2272 0.250338 AAGTCGTGAGGCCAACTTCC 60.250 55.000 5.01 0.00 35.23 3.46
2259 2274 1.166531 GCAAGTCGTGAGGCCAACTT 61.167 55.000 5.01 3.54 35.23 2.66
2272 2287 4.229876 GGCATGAAAGTACAAAGCAAGTC 58.770 43.478 0.00 0.00 0.00 3.01
2273 2288 3.005791 GGGCATGAAAGTACAAAGCAAGT 59.994 43.478 0.00 0.00 0.00 3.16
2274 2289 3.005684 TGGGCATGAAAGTACAAAGCAAG 59.994 43.478 0.00 0.00 0.00 4.01
2275 2290 2.961741 TGGGCATGAAAGTACAAAGCAA 59.038 40.909 0.00 0.00 0.00 3.91
2276 2291 2.591923 TGGGCATGAAAGTACAAAGCA 58.408 42.857 0.00 0.00 0.00 3.91
2277 2292 3.056607 ACATGGGCATGAAAGTACAAAGC 60.057 43.478 0.00 0.00 41.20 3.51
2278 2293 4.789012 ACATGGGCATGAAAGTACAAAG 57.211 40.909 0.00 0.00 41.20 2.77
2279 2294 4.343526 ACAACATGGGCATGAAAGTACAAA 59.656 37.500 0.00 0.00 41.20 2.83
2280 2295 3.894427 ACAACATGGGCATGAAAGTACAA 59.106 39.130 0.00 0.00 41.20 2.41
2281 2296 3.255395 CACAACATGGGCATGAAAGTACA 59.745 43.478 0.00 0.00 41.20 2.90
2282 2297 3.255642 ACACAACATGGGCATGAAAGTAC 59.744 43.478 0.00 0.00 41.20 2.73
2283 2298 3.495331 ACACAACATGGGCATGAAAGTA 58.505 40.909 0.00 0.00 41.20 2.24
2284 2299 2.318908 ACACAACATGGGCATGAAAGT 58.681 42.857 0.00 0.00 41.20 2.66
2285 2300 3.061322 CAACACAACATGGGCATGAAAG 58.939 45.455 0.00 0.00 41.20 2.62
2286 2301 2.433604 ACAACACAACATGGGCATGAAA 59.566 40.909 0.00 0.00 41.20 2.69
2287 2302 2.037901 ACAACACAACATGGGCATGAA 58.962 42.857 0.00 0.00 41.20 2.57
2288 2303 1.702182 ACAACACAACATGGGCATGA 58.298 45.000 0.00 0.00 41.20 3.07
2289 2304 3.056678 ACATACAACACAACATGGGCATG 60.057 43.478 0.00 0.00 44.15 4.06
2290 2305 3.164268 ACATACAACACAACATGGGCAT 58.836 40.909 0.00 0.00 0.00 4.40
2291 2306 2.591923 ACATACAACACAACATGGGCA 58.408 42.857 0.00 0.00 0.00 5.36
2292 2307 3.658757 AACATACAACACAACATGGGC 57.341 42.857 0.00 0.00 0.00 5.36
2293 2308 3.740321 GCAAACATACAACACAACATGGG 59.260 43.478 0.00 0.00 0.00 4.00
2294 2309 4.619973 AGCAAACATACAACACAACATGG 58.380 39.130 0.00 0.00 0.00 3.66
2295 2310 5.519566 ACAAGCAAACATACAACACAACATG 59.480 36.000 0.00 0.00 0.00 3.21
2296 2311 5.659463 ACAAGCAAACATACAACACAACAT 58.341 33.333 0.00 0.00 0.00 2.71
2297 2312 5.065704 ACAAGCAAACATACAACACAACA 57.934 34.783 0.00 0.00 0.00 3.33
2298 2313 6.291585 GCTAACAAGCAAACATACAACACAAC 60.292 38.462 0.00 0.00 34.41 3.32
2299 2314 5.746245 GCTAACAAGCAAACATACAACACAA 59.254 36.000 0.00 0.00 34.41 3.33
2300 2315 5.277825 GCTAACAAGCAAACATACAACACA 58.722 37.500 0.00 0.00 34.41 3.72
2301 2316 4.679654 GGCTAACAAGCAAACATACAACAC 59.320 41.667 0.00 0.00 36.33 3.32
2302 2317 4.261825 GGGCTAACAAGCAAACATACAACA 60.262 41.667 0.00 0.00 36.33 3.33
2303 2318 4.022329 AGGGCTAACAAGCAAACATACAAC 60.022 41.667 0.00 0.00 36.33 3.32
2304 2319 4.148838 AGGGCTAACAAGCAAACATACAA 58.851 39.130 0.00 0.00 36.33 2.41
2305 2320 3.761897 AGGGCTAACAAGCAAACATACA 58.238 40.909 0.00 0.00 36.33 2.29
2306 2321 5.890424 TTAGGGCTAACAAGCAAACATAC 57.110 39.130 0.00 0.00 36.33 2.39
2307 2322 6.902771 TTTTAGGGCTAACAAGCAAACATA 57.097 33.333 0.00 0.00 36.33 2.29
2308 2323 5.799827 TTTTAGGGCTAACAAGCAAACAT 57.200 34.783 0.00 0.00 36.33 2.71
2309 2324 5.069781 ACATTTTAGGGCTAACAAGCAAACA 59.930 36.000 0.00 0.00 36.33 2.83
2310 2325 5.538118 ACATTTTAGGGCTAACAAGCAAAC 58.462 37.500 0.00 0.00 36.33 2.93
2311 2326 5.799827 ACATTTTAGGGCTAACAAGCAAA 57.200 34.783 0.00 0.00 36.33 3.68
2312 2327 6.071616 CCTTACATTTTAGGGCTAACAAGCAA 60.072 38.462 0.00 0.00 36.33 3.91
2313 2328 5.417580 CCTTACATTTTAGGGCTAACAAGCA 59.582 40.000 0.00 0.00 36.33 3.91
2314 2329 5.417894 ACCTTACATTTTAGGGCTAACAAGC 59.582 40.000 0.00 0.00 35.79 4.01
2315 2330 6.433093 ACACCTTACATTTTAGGGCTAACAAG 59.567 38.462 0.00 0.00 35.79 3.16
2316 2331 6.308566 ACACCTTACATTTTAGGGCTAACAA 58.691 36.000 0.00 0.00 35.79 2.83
2317 2332 5.883180 ACACCTTACATTTTAGGGCTAACA 58.117 37.500 0.00 0.00 35.79 2.41
2318 2333 6.349860 CCAACACCTTACATTTTAGGGCTAAC 60.350 42.308 0.00 0.00 35.79 2.34
2319 2334 5.712917 CCAACACCTTACATTTTAGGGCTAA 59.287 40.000 0.00 0.00 35.79 3.09
2320 2335 5.222171 ACCAACACCTTACATTTTAGGGCTA 60.222 40.000 0.00 0.00 35.79 3.93
2321 2336 4.086457 CCAACACCTTACATTTTAGGGCT 58.914 43.478 0.00 0.00 35.79 5.19
2322 2337 3.830178 ACCAACACCTTACATTTTAGGGC 59.170 43.478 0.00 0.00 35.79 5.19
2323 2338 5.074115 TCACCAACACCTTACATTTTAGGG 58.926 41.667 0.00 0.00 35.79 3.53
2324 2339 6.642707 TTCACCAACACCTTACATTTTAGG 57.357 37.500 0.00 0.00 37.56 2.69
2327 2342 9.892130 TTTATTTTCACCAACACCTTACATTTT 57.108 25.926 0.00 0.00 0.00 1.82
2330 2345 9.487790 CAATTTATTTTCACCAACACCTTACAT 57.512 29.630 0.00 0.00 0.00 2.29
2331 2346 7.928706 CCAATTTATTTTCACCAACACCTTACA 59.071 33.333 0.00 0.00 0.00 2.41
2332 2347 7.929245 ACCAATTTATTTTCACCAACACCTTAC 59.071 33.333 0.00 0.00 0.00 2.34
2333 2348 8.024145 ACCAATTTATTTTCACCAACACCTTA 57.976 30.769 0.00 0.00 0.00 2.69
2334 2349 6.894682 ACCAATTTATTTTCACCAACACCTT 58.105 32.000 0.00 0.00 0.00 3.50
2335 2350 6.493189 ACCAATTTATTTTCACCAACACCT 57.507 33.333 0.00 0.00 0.00 4.00
2336 2351 7.561021 AAACCAATTTATTTTCACCAACACC 57.439 32.000 0.00 0.00 0.00 4.16
2369 2384 5.555069 GCACTATCAAAATAAGCGCAAATGC 60.555 40.000 11.47 0.00 37.78 3.56
2370 2385 5.515982 TGCACTATCAAAATAAGCGCAAATG 59.484 36.000 11.47 0.00 0.00 2.32
2371 2386 5.649557 TGCACTATCAAAATAAGCGCAAAT 58.350 33.333 11.47 0.00 0.00 2.32
2372 2387 5.053140 TGCACTATCAAAATAAGCGCAAA 57.947 34.783 11.47 0.00 0.00 3.68
2373 2388 4.693538 TGCACTATCAAAATAAGCGCAA 57.306 36.364 11.47 0.00 0.00 4.85
2374 2389 4.898829 ATGCACTATCAAAATAAGCGCA 57.101 36.364 11.47 0.00 0.00 6.09
2375 2390 6.373779 ACATATGCACTATCAAAATAAGCGC 58.626 36.000 0.00 0.00 0.00 5.92
2376 2391 8.786937 AAACATATGCACTATCAAAATAAGCG 57.213 30.769 1.58 0.00 0.00 4.68
2383 2398 8.836413 GGCTAAGTAAACATATGCACTATCAAA 58.164 33.333 1.58 0.00 0.00 2.69
2384 2399 7.990314 TGGCTAAGTAAACATATGCACTATCAA 59.010 33.333 1.58 0.00 0.00 2.57
2385 2400 7.441157 GTGGCTAAGTAAACATATGCACTATCA 59.559 37.037 1.58 0.00 0.00 2.15
2386 2401 7.095187 GGTGGCTAAGTAAACATATGCACTATC 60.095 40.741 1.58 0.00 0.00 2.08
2387 2402 6.710744 GGTGGCTAAGTAAACATATGCACTAT 59.289 38.462 1.58 0.00 0.00 2.12
2388 2403 6.053005 GGTGGCTAAGTAAACATATGCACTA 58.947 40.000 1.58 0.00 0.00 2.74
2389 2404 4.881850 GGTGGCTAAGTAAACATATGCACT 59.118 41.667 1.58 0.98 0.00 4.40
2390 2405 4.881850 AGGTGGCTAAGTAAACATATGCAC 59.118 41.667 1.58 0.00 0.00 4.57
2391 2406 5.104527 AGAGGTGGCTAAGTAAACATATGCA 60.105 40.000 1.58 0.00 0.00 3.96
2392 2407 5.237344 CAGAGGTGGCTAAGTAAACATATGC 59.763 44.000 1.58 0.00 0.00 3.14
2393 2408 6.582636 TCAGAGGTGGCTAAGTAAACATATG 58.417 40.000 0.00 0.00 0.00 1.78
2394 2409 6.808321 TCAGAGGTGGCTAAGTAAACATAT 57.192 37.500 0.00 0.00 0.00 1.78
2395 2410 6.808321 ATCAGAGGTGGCTAAGTAAACATA 57.192 37.500 0.00 0.00 0.00 2.29
2396 2411 5.700402 ATCAGAGGTGGCTAAGTAAACAT 57.300 39.130 0.00 0.00 0.00 2.71
2397 2412 5.720041 AGTATCAGAGGTGGCTAAGTAAACA 59.280 40.000 0.00 0.00 0.00 2.83
2398 2413 6.043411 CAGTATCAGAGGTGGCTAAGTAAAC 58.957 44.000 0.00 0.00 0.00 2.01
2399 2414 5.955959 TCAGTATCAGAGGTGGCTAAGTAAA 59.044 40.000 0.00 0.00 0.00 2.01
2400 2415 5.516044 TCAGTATCAGAGGTGGCTAAGTAA 58.484 41.667 0.00 0.00 0.00 2.24
2401 2416 5.125367 TCAGTATCAGAGGTGGCTAAGTA 57.875 43.478 0.00 0.00 0.00 2.24
2402 2417 3.982516 TCAGTATCAGAGGTGGCTAAGT 58.017 45.455 0.00 0.00 0.00 2.24
2403 2418 5.344743 TTTCAGTATCAGAGGTGGCTAAG 57.655 43.478 0.00 0.00 0.00 2.18
2404 2419 5.957771 ATTTCAGTATCAGAGGTGGCTAA 57.042 39.130 0.00 0.00 0.00 3.09
2405 2420 5.540337 CCTATTTCAGTATCAGAGGTGGCTA 59.460 44.000 0.00 0.00 0.00 3.93
2406 2421 4.346418 CCTATTTCAGTATCAGAGGTGGCT 59.654 45.833 0.00 0.00 0.00 4.75
2407 2422 4.636249 CCTATTTCAGTATCAGAGGTGGC 58.364 47.826 0.00 0.00 0.00 5.01
2408 2423 4.101585 TGCCTATTTCAGTATCAGAGGTGG 59.898 45.833 0.00 0.00 0.00 4.61
2409 2424 5.053145 GTGCCTATTTCAGTATCAGAGGTG 58.947 45.833 0.00 0.00 0.00 4.00
2410 2425 4.101741 GGTGCCTATTTCAGTATCAGAGGT 59.898 45.833 0.00 0.00 0.00 3.85
2411 2426 4.636249 GGTGCCTATTTCAGTATCAGAGG 58.364 47.826 0.00 0.00 0.00 3.69
2412 2427 4.202161 ACGGTGCCTATTTCAGTATCAGAG 60.202 45.833 0.00 0.00 0.00 3.35
2413 2428 3.704566 ACGGTGCCTATTTCAGTATCAGA 59.295 43.478 0.00 0.00 0.00 3.27
2414 2429 3.804325 CACGGTGCCTATTTCAGTATCAG 59.196 47.826 0.00 0.00 0.00 2.90
2415 2430 3.431626 CCACGGTGCCTATTTCAGTATCA 60.432 47.826 1.68 0.00 0.00 2.15
2416 2431 3.131396 CCACGGTGCCTATTTCAGTATC 58.869 50.000 1.68 0.00 0.00 2.24
2417 2432 2.769663 TCCACGGTGCCTATTTCAGTAT 59.230 45.455 1.68 0.00 0.00 2.12
2418 2433 2.167693 CTCCACGGTGCCTATTTCAGTA 59.832 50.000 1.68 0.00 0.00 2.74
2419 2434 0.981183 TCCACGGTGCCTATTTCAGT 59.019 50.000 1.68 0.00 0.00 3.41
2420 2435 1.656652 CTCCACGGTGCCTATTTCAG 58.343 55.000 1.68 0.00 0.00 3.02
2421 2436 0.392461 GCTCCACGGTGCCTATTTCA 60.392 55.000 1.68 0.00 0.00 2.69
2422 2437 0.392461 TGCTCCACGGTGCCTATTTC 60.392 55.000 1.68 0.00 34.16 2.17
2423 2438 0.037590 TTGCTCCACGGTGCCTATTT 59.962 50.000 1.68 0.00 34.16 1.40
2424 2439 0.037590 TTTGCTCCACGGTGCCTATT 59.962 50.000 1.68 0.00 34.16 1.73
2425 2440 0.037590 TTTTGCTCCACGGTGCCTAT 59.962 50.000 1.68 0.00 34.16 2.57
2426 2441 0.887387 GTTTTGCTCCACGGTGCCTA 60.887 55.000 1.68 0.00 34.16 3.93
2427 2442 2.193536 GTTTTGCTCCACGGTGCCT 61.194 57.895 1.68 0.00 34.16 4.75
2428 2443 2.335011 GTTTTGCTCCACGGTGCC 59.665 61.111 1.68 0.00 34.16 5.01
2429 2444 2.335011 GGTTTTGCTCCACGGTGC 59.665 61.111 1.68 3.16 35.46 5.01
2430 2445 2.903547 CGGGTTTTGCTCCACGGTG 61.904 63.158 0.00 0.00 0.00 4.94
2431 2446 2.593436 CGGGTTTTGCTCCACGGT 60.593 61.111 0.00 0.00 0.00 4.83
2432 2447 3.361977 CCGGGTTTTGCTCCACGG 61.362 66.667 0.00 0.00 34.48 4.94
2433 2448 1.730451 AAACCGGGTTTTGCTCCACG 61.730 55.000 19.22 0.00 31.10 4.94
2434 2449 1.268625 CTAAACCGGGTTTTGCTCCAC 59.731 52.381 28.50 0.00 37.01 4.02
2435 2450 1.143277 TCTAAACCGGGTTTTGCTCCA 59.857 47.619 28.50 10.08 37.01 3.86
2436 2451 1.810755 CTCTAAACCGGGTTTTGCTCC 59.189 52.381 28.50 0.00 37.01 4.70
2437 2452 2.225727 CACTCTAAACCGGGTTTTGCTC 59.774 50.000 28.50 0.00 37.01 4.26
2438 2453 2.227194 CACTCTAAACCGGGTTTTGCT 58.773 47.619 28.50 12.90 37.01 3.91
2439 2454 1.951602 ACACTCTAAACCGGGTTTTGC 59.048 47.619 28.50 0.00 37.01 3.68
2440 2455 3.207778 TGACACTCTAAACCGGGTTTTG 58.792 45.455 28.50 25.35 37.01 2.44
2441 2456 3.118149 ACTGACACTCTAAACCGGGTTTT 60.118 43.478 28.50 11.01 37.01 2.43
2442 2457 2.436911 ACTGACACTCTAAACCGGGTTT 59.563 45.455 26.79 26.79 39.24 3.27
2443 2458 2.044758 ACTGACACTCTAAACCGGGTT 58.955 47.619 10.96 10.96 0.00 4.11
2444 2459 1.713297 ACTGACACTCTAAACCGGGT 58.287 50.000 6.32 0.00 0.00 5.28
2445 2460 2.036733 TCAACTGACACTCTAAACCGGG 59.963 50.000 6.32 0.00 0.00 5.73
2446 2461 3.380479 TCAACTGACACTCTAAACCGG 57.620 47.619 0.00 0.00 0.00 5.28
2447 2462 5.924475 AAATCAACTGACACTCTAAACCG 57.076 39.130 0.00 0.00 0.00 4.44
2448 2463 8.547967 TGATAAATCAACTGACACTCTAAACC 57.452 34.615 0.00 0.00 33.08 3.27
2449 2464 9.209175 ACTGATAAATCAACTGACACTCTAAAC 57.791 33.333 0.00 0.00 36.18 2.01
2450 2465 9.208022 CACTGATAAATCAACTGACACTCTAAA 57.792 33.333 0.00 0.00 36.18 1.85
2451 2466 8.763049 CACTGATAAATCAACTGACACTCTAA 57.237 34.615 0.00 0.00 36.18 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.