Multiple sequence alignment - TraesCS7B01G228700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G228700 chr7B 100.000 3920 0 0 1 3920 428929322 428925403 0.000000e+00 7239.0
1 TraesCS7B01G228700 chr7B 92.758 718 45 5 1 716 467443646 467444358 0.000000e+00 1031.0
2 TraesCS7B01G228700 chr7B 92.105 418 30 3 3505 3920 20393017 20393433 1.570000e-163 586.0
3 TraesCS7B01G228700 chr7B 94.118 51 3 0 3408 3458 743648307 743648357 1.170000e-10 78.7
4 TraesCS7B01G228700 chr7A 91.342 1155 55 15 2287 3402 476938729 476937581 0.000000e+00 1537.0
5 TraesCS7B01G228700 chr7A 93.197 1029 54 10 1272 2288 476939867 476938843 0.000000e+00 1498.0
6 TraesCS7B01G228700 chr7A 92.066 542 18 9 716 1241 476940397 476939865 0.000000e+00 739.0
7 TraesCS7B01G228700 chr7A 92.500 160 10 2 2609 2766 476915811 476915652 1.100000e-55 228.0
8 TraesCS7B01G228700 chr7D 94.049 773 40 4 1270 2038 414492804 414492034 0.000000e+00 1168.0
9 TraesCS7B01G228700 chr7D 90.741 648 28 16 2785 3402 414491513 414490868 0.000000e+00 835.0
10 TraesCS7B01G228700 chr7D 93.011 558 8 8 717 1249 414493341 414492790 0.000000e+00 785.0
11 TraesCS7B01G228700 chr7D 82.294 497 57 19 2113 2583 414492031 414491540 6.100000e-108 401.0
12 TraesCS7B01G228700 chr7D 92.424 66 5 0 3402 3467 500812105 500812170 1.160000e-15 95.3
13 TraesCS7B01G228700 chr2B 91.956 721 55 3 1 720 571814195 571813477 0.000000e+00 1007.0
14 TraesCS7B01G228700 chr2B 89.517 725 61 10 1 716 175651213 175651931 0.000000e+00 904.0
15 TraesCS7B01G228700 chr2B 93.239 355 22 2 3568 3920 106547511 106547157 4.490000e-144 521.0
16 TraesCS7B01G228700 chr4B 91.828 722 55 4 1 720 47030589 47031308 0.000000e+00 1003.0
17 TraesCS7B01G228700 chr4B 90.542 719 62 6 1 716 29195960 29195245 0.000000e+00 946.0
18 TraesCS7B01G228700 chr4B 91.647 419 29 6 3505 3920 135099320 135098905 3.400000e-160 575.0
19 TraesCS7B01G228700 chr1B 91.226 718 59 4 1 716 453698140 453697425 0.000000e+00 974.0
20 TraesCS7B01G228700 chr1B 90.691 666 53 8 56 716 363453896 363453235 0.000000e+00 878.0
21 TraesCS7B01G228700 chr1B 91.607 417 26 4 3505 3919 109233954 109234363 5.680000e-158 568.0
22 TraesCS7B01G228700 chr1B 90.780 423 31 6 3505 3919 48281011 48281433 3.420000e-155 558.0
23 TraesCS7B01G228700 chr5B 89.474 722 70 6 1 720 536431200 536430483 0.000000e+00 907.0
24 TraesCS7B01G228700 chr5B 85.071 422 50 12 3505 3919 676817630 676818045 6.060000e-113 418.0
25 TraesCS7B01G228700 chr5D 87.449 733 57 18 1 716 286162503 286161789 0.000000e+00 811.0
26 TraesCS7B01G228700 chr3B 93.541 418 22 3 3505 3920 226486240 226486654 5.560000e-173 617.0
27 TraesCS7B01G228700 chrUn 90.796 402 30 5 3525 3919 225713585 225713184 7.460000e-147 531.0
28 TraesCS7B01G228700 chrUn 90.796 402 30 5 3525 3919 476840185 476840586 7.460000e-147 531.0
29 TraesCS7B01G228700 chrUn 91.176 170 13 2 2609 2776 109117365 109117196 3.050000e-56 230.0
30 TraesCS7B01G228700 chr4A 92.025 163 12 1 2609 2770 27642113 27641951 1.100000e-55 228.0
31 TraesCS7B01G228700 chr4A 89.941 169 15 1 2606 2772 37306863 37307031 2.370000e-52 217.0
32 TraesCS7B01G228700 chr2D 90.643 171 15 1 2608 2777 63708571 63708401 3.940000e-55 226.0
33 TraesCS7B01G228700 chr2D 91.018 167 14 1 2607 2772 152021490 152021324 1.420000e-54 224.0
34 TraesCS7B01G228700 chr2D 90.964 166 13 2 2609 2772 498473158 498472993 5.100000e-54 222.0
35 TraesCS7B01G228700 chr6D 90.964 166 14 1 2608 2772 93646225 93646390 5.100000e-54 222.0
36 TraesCS7B01G228700 chr6D 92.593 54 4 0 3405 3458 155261345 155261292 1.170000e-10 78.7
37 TraesCS7B01G228700 chr2A 84.375 192 21 3 1 184 703180144 703180334 3.110000e-41 180.0
38 TraesCS7B01G228700 chr2A 95.833 96 4 0 1 96 585681134 585681039 5.240000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G228700 chr7B 428925403 428929322 3919 True 7239.00 7239 100.000000 1 3920 1 chr7B.!!$R1 3919
1 TraesCS7B01G228700 chr7B 467443646 467444358 712 False 1031.00 1031 92.758000 1 716 1 chr7B.!!$F2 715
2 TraesCS7B01G228700 chr7A 476937581 476940397 2816 True 1258.00 1537 92.201667 716 3402 3 chr7A.!!$R2 2686
3 TraesCS7B01G228700 chr7D 414490868 414493341 2473 True 797.25 1168 90.023750 717 3402 4 chr7D.!!$R1 2685
4 TraesCS7B01G228700 chr2B 571813477 571814195 718 True 1007.00 1007 91.956000 1 720 1 chr2B.!!$R2 719
5 TraesCS7B01G228700 chr2B 175651213 175651931 718 False 904.00 904 89.517000 1 716 1 chr2B.!!$F1 715
6 TraesCS7B01G228700 chr4B 47030589 47031308 719 False 1003.00 1003 91.828000 1 720 1 chr4B.!!$F1 719
7 TraesCS7B01G228700 chr4B 29195245 29195960 715 True 946.00 946 90.542000 1 716 1 chr4B.!!$R1 715
8 TraesCS7B01G228700 chr1B 453697425 453698140 715 True 974.00 974 91.226000 1 716 1 chr1B.!!$R2 715
9 TraesCS7B01G228700 chr1B 363453235 363453896 661 True 878.00 878 90.691000 56 716 1 chr1B.!!$R1 660
10 TraesCS7B01G228700 chr5B 536430483 536431200 717 True 907.00 907 89.474000 1 720 1 chr5B.!!$R1 719
11 TraesCS7B01G228700 chr5D 286161789 286162503 714 True 811.00 811 87.449000 1 716 1 chr5D.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 399 0.680618 ACGTGGTTTGGTATGGACGA 59.319 50.000 0.0 0.0 0.00 4.20 F
967 1003 1.132262 CCAATTTCGATTCCCACCACG 59.868 52.381 0.0 0.0 0.00 4.94 F
1265 1313 0.107831 CACCCCCTTCACTTCGTTCA 59.892 55.000 0.0 0.0 0.00 3.18 F
2504 2685 0.693049 ATCGCAGAAACCCCTGTTCT 59.307 50.000 0.0 0.0 43.58 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1294 0.107831 TGAACGAAGTGAAGGGGGTG 59.892 55.0 0.0 0.0 45.0 4.61 R
2814 3007 0.100325 CCGCTCTGCAACAAACACAA 59.900 50.0 0.0 0.0 0.0 3.33 R
2841 3034 1.021390 GTAGCAGCACAATGACCGCT 61.021 55.0 0.0 0.0 36.1 5.52 R
3514 3749 0.117340 AGGAGGCTGGTCTAGTGGTT 59.883 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 2.434702 AGTGGTGGAAGAAGAACTCGTT 59.565 45.455 0.00 0.00 0.00 3.85
385 399 0.680618 ACGTGGTTTGGTATGGACGA 59.319 50.000 0.00 0.00 0.00 4.20
460 475 4.507916 CGGGGCGGGAGAGAGAGA 62.508 72.222 0.00 0.00 0.00 3.10
505 521 1.203063 TGCTAGTGTCCCTGACAGACT 60.203 52.381 3.32 1.79 43.57 3.24
561 585 3.036084 CGCGCGTCTGTTTCACCT 61.036 61.111 24.19 0.00 0.00 4.00
669 693 3.428870 CGCGCTATTCGTCCATTTTATCT 59.571 43.478 5.56 0.00 41.07 1.98
670 694 4.084537 CGCGCTATTCGTCCATTTTATCTT 60.085 41.667 5.56 0.00 41.07 2.40
699 723 2.186903 CCCGGACAAGATGGGTCG 59.813 66.667 0.73 0.00 38.18 4.79
701 725 2.885644 CGGACAAGATGGGTCGCG 60.886 66.667 0.00 0.00 36.12 5.87
702 726 2.264794 GGACAAGATGGGTCGCGT 59.735 61.111 5.77 0.00 36.12 6.01
703 727 2.100631 GGACAAGATGGGTCGCGTG 61.101 63.158 5.77 0.00 36.12 5.34
705 729 2.047274 CAAGATGGGTCGCGTGGT 60.047 61.111 5.77 0.00 0.00 4.16
706 730 2.047274 AAGATGGGTCGCGTGGTG 60.047 61.111 5.77 0.00 0.00 4.17
724 748 2.811317 GGAGTTGGCGTGAGAGCG 60.811 66.667 0.00 0.00 38.18 5.03
747 771 6.144563 GCGAGGAAGGAAAAAGAAAGAAAATG 59.855 38.462 0.00 0.00 0.00 2.32
895 931 1.192146 TCCGTCTTCCTGGACCCAAG 61.192 60.000 0.00 0.00 33.07 3.61
896 932 1.296715 CGTCTTCCTGGACCCAAGG 59.703 63.158 0.00 0.00 33.07 3.61
897 933 1.481056 CGTCTTCCTGGACCCAAGGT 61.481 60.000 0.00 0.00 39.44 3.50
965 1001 2.823154 GTTCCAATTTCGATTCCCACCA 59.177 45.455 0.00 0.00 0.00 4.17
967 1003 1.132262 CCAATTTCGATTCCCACCACG 59.868 52.381 0.00 0.00 0.00 4.94
1243 1291 1.907255 GTCAGTACTGCTAACCCCCTT 59.093 52.381 18.45 0.00 0.00 3.95
1245 1293 2.188817 CAGTACTGCTAACCCCCTTCT 58.811 52.381 10.54 0.00 0.00 2.85
1246 1294 2.168728 CAGTACTGCTAACCCCCTTCTC 59.831 54.545 10.54 0.00 0.00 2.87
1247 1295 2.185387 GTACTGCTAACCCCCTTCTCA 58.815 52.381 0.00 0.00 0.00 3.27
1248 1296 0.984995 ACTGCTAACCCCCTTCTCAC 59.015 55.000 0.00 0.00 0.00 3.51
1250 1298 1.205460 TGCTAACCCCCTTCTCACCC 61.205 60.000 0.00 0.00 0.00 4.61
1251 1299 1.923006 GCTAACCCCCTTCTCACCCC 61.923 65.000 0.00 0.00 0.00 4.95
1252 1300 1.230050 TAACCCCCTTCTCACCCCC 60.230 63.158 0.00 0.00 0.00 5.40
1253 1301 1.768231 TAACCCCCTTCTCACCCCCT 61.768 60.000 0.00 0.00 0.00 4.79
1254 1302 2.204306 CCCCCTTCTCACCCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
1255 1303 2.309504 CCCCCTTCTCACCCCCTTC 61.310 68.421 0.00 0.00 0.00 3.46
1256 1304 1.541368 CCCCTTCTCACCCCCTTCA 60.541 63.158 0.00 0.00 0.00 3.02
1257 1305 1.685820 CCCTTCTCACCCCCTTCAC 59.314 63.158 0.00 0.00 0.00 3.18
1258 1306 0.842467 CCCTTCTCACCCCCTTCACT 60.842 60.000 0.00 0.00 0.00 3.41
1259 1307 1.068121 CCTTCTCACCCCCTTCACTT 58.932 55.000 0.00 0.00 0.00 3.16
1260 1308 1.003696 CCTTCTCACCCCCTTCACTTC 59.996 57.143 0.00 0.00 0.00 3.01
1261 1309 0.685097 TTCTCACCCCCTTCACTTCG 59.315 55.000 0.00 0.00 0.00 3.79
1262 1310 0.471211 TCTCACCCCCTTCACTTCGT 60.471 55.000 0.00 0.00 0.00 3.85
1263 1311 0.396811 CTCACCCCCTTCACTTCGTT 59.603 55.000 0.00 0.00 0.00 3.85
1264 1312 0.395312 TCACCCCCTTCACTTCGTTC 59.605 55.000 0.00 0.00 0.00 3.95
1265 1313 0.107831 CACCCCCTTCACTTCGTTCA 59.892 55.000 0.00 0.00 0.00 3.18
1266 1314 0.841289 ACCCCCTTCACTTCGTTCAA 59.159 50.000 0.00 0.00 0.00 2.69
1267 1315 1.213430 ACCCCCTTCACTTCGTTCAAA 59.787 47.619 0.00 0.00 0.00 2.69
1268 1316 2.303175 CCCCCTTCACTTCGTTCAAAA 58.697 47.619 0.00 0.00 0.00 2.44
1269 1317 2.691011 CCCCCTTCACTTCGTTCAAAAA 59.309 45.455 0.00 0.00 0.00 1.94
1303 1351 3.428532 TCGGCCTCTAGTTAGTCAGTTT 58.571 45.455 0.00 0.00 0.00 2.66
1401 1452 5.533528 TGAGATGTTGGGATAGAATTGCATG 59.466 40.000 0.00 0.00 0.00 4.06
1402 1453 4.280174 AGATGTTGGGATAGAATTGCATGC 59.720 41.667 11.82 11.82 0.00 4.06
1489 1541 1.134401 TGCCTTGCCAGCATCTAGTAC 60.134 52.381 0.00 0.00 34.69 2.73
1491 1543 2.420687 GCCTTGCCAGCATCTAGTACTT 60.421 50.000 0.00 0.00 0.00 2.24
1492 1544 3.878778 CCTTGCCAGCATCTAGTACTTT 58.121 45.455 0.00 0.00 0.00 2.66
1493 1545 4.683400 GCCTTGCCAGCATCTAGTACTTTA 60.683 45.833 0.00 0.00 0.00 1.85
1494 1546 5.615289 CCTTGCCAGCATCTAGTACTTTAT 58.385 41.667 0.00 0.00 0.00 1.40
1495 1547 5.698545 CCTTGCCAGCATCTAGTACTTTATC 59.301 44.000 0.00 0.00 0.00 1.75
1496 1548 6.463614 CCTTGCCAGCATCTAGTACTTTATCT 60.464 42.308 0.00 0.00 0.00 1.98
1497 1549 5.847304 TGCCAGCATCTAGTACTTTATCTG 58.153 41.667 0.00 3.04 0.00 2.90
1498 1550 5.363868 TGCCAGCATCTAGTACTTTATCTGT 59.636 40.000 0.00 0.00 0.00 3.41
1499 1551 6.549736 TGCCAGCATCTAGTACTTTATCTGTA 59.450 38.462 0.00 0.00 0.00 2.74
1500 1552 7.069455 TGCCAGCATCTAGTACTTTATCTGTAA 59.931 37.037 0.00 0.00 0.00 2.41
1502 1554 8.634444 CCAGCATCTAGTACTTTATCTGTAACT 58.366 37.037 0.00 0.00 0.00 2.24
1511 1566 8.852135 AGTACTTTATCTGTAACTATCCTGCTC 58.148 37.037 0.00 0.00 0.00 4.26
1516 1571 3.762288 TCTGTAACTATCCTGCTCGTTGT 59.238 43.478 0.00 0.00 0.00 3.32
1526 1581 4.695396 TCCTGCTCGTTGTTAACACTTTA 58.305 39.130 8.07 0.00 0.00 1.85
1534 1589 4.261238 CGTTGTTAACACTTTACCATGCCA 60.261 41.667 8.07 0.00 0.00 4.92
1536 1591 6.220201 GTTGTTAACACTTTACCATGCCATT 58.780 36.000 8.07 0.00 0.00 3.16
1537 1592 6.019779 TGTTAACACTTTACCATGCCATTC 57.980 37.500 3.59 0.00 0.00 2.67
1654 1712 1.808411 ATGCCATGAACGACGAGTTT 58.192 45.000 0.00 0.00 44.35 2.66
1666 1724 2.328099 CGAGTTTGCCAGGGTGCTC 61.328 63.158 0.00 0.00 0.00 4.26
1752 1810 1.753078 TCAGCGAGGCGAGTACCAT 60.753 57.895 0.00 0.00 0.00 3.55
1829 1887 3.366273 GCTTACAGTGCTTATGCTTGCAA 60.366 43.478 0.00 0.00 41.10 4.08
1879 1937 7.453393 TGGTTGACAACATAGAGAAGATTCTT 58.547 34.615 19.58 0.00 37.73 2.52
1933 1991 1.293062 AGACCTCCACAATGCAGGAT 58.707 50.000 0.00 0.00 32.53 3.24
1936 1994 2.171448 GACCTCCACAATGCAGGATAGT 59.829 50.000 0.00 0.00 32.53 2.12
1939 1997 1.027357 CCACAATGCAGGATAGTGGC 58.973 55.000 11.26 0.00 42.68 5.01
2075 2133 6.323203 TGTTAACTTTCGAGTACACTAGCT 57.677 37.500 7.22 0.00 0.00 3.32
2124 2182 9.320352 GGCCATTGAAAGTTTTTCTAAAAAGTA 57.680 29.630 0.00 0.00 39.82 2.24
2223 2282 2.483014 TGTAGTTTTCCATGTCCCCG 57.517 50.000 0.00 0.00 0.00 5.73
2234 2293 1.210478 CATGTCCCCGGATTCAGTCTT 59.790 52.381 0.73 0.00 0.00 3.01
2406 2587 9.772973 TTTGAAGTAAATTCTACAGCTCTGTAA 57.227 29.630 10.54 0.26 44.47 2.41
2504 2685 0.693049 ATCGCAGAAACCCCTGTTCT 59.307 50.000 0.00 0.00 43.58 3.01
2521 2702 5.641209 CCTGTTCTGACTAGGAAATCTTGTG 59.359 44.000 0.00 0.00 31.84 3.33
2579 2770 4.780815 CCAACCAATGGCTCTCTATAACA 58.219 43.478 0.00 0.00 43.80 2.41
2580 2771 4.576463 CCAACCAATGGCTCTCTATAACAC 59.424 45.833 0.00 0.00 43.80 3.32
2607 2798 7.645340 CACCAGAGTTTTATTTCTGTTGACTTG 59.355 37.037 1.39 0.00 36.34 3.16
2612 2803 9.865484 GAGTTTTATTTCTGTTGACTTGTACTC 57.135 33.333 0.00 0.00 0.00 2.59
2617 2808 2.897969 TCTGTTGACTTGTACTCCCTCC 59.102 50.000 0.00 0.00 0.00 4.30
2653 2844 5.077134 AGGCTTTTTAGACATTCCAATGC 57.923 39.130 0.00 0.00 40.04 3.56
2655 2846 4.380444 GGCTTTTTAGACATTCCAATGCGA 60.380 41.667 0.00 0.00 40.04 5.10
2687 2880 5.349817 ACAGAGCAAAATGAGTGAATCTACG 59.650 40.000 0.00 0.00 0.00 3.51
2688 2881 5.578336 CAGAGCAAAATGAGTGAATCTACGA 59.422 40.000 0.00 0.00 0.00 3.43
2779 2972 8.783660 AGAAATGAGGGAGTATATGTCAGTTA 57.216 34.615 0.00 0.00 0.00 2.24
2814 3007 5.506982 GCAGCTTCTGAGATGTTTCTTGTTT 60.507 40.000 0.00 0.00 41.32 2.83
2841 3034 1.153269 TTGCAGAGCGGTGTTGACA 60.153 52.632 0.00 0.00 0.00 3.58
2919 3112 3.494924 CCCTTCCATCGTGCAGATCATAA 60.495 47.826 0.00 0.00 37.52 1.90
3003 3199 6.516527 GCCTTATGTTTTGGTCAACAGATTCA 60.517 38.462 0.00 0.00 40.01 2.57
3004 3200 7.432869 CCTTATGTTTTGGTCAACAGATTCAA 58.567 34.615 0.00 0.00 40.01 2.69
3017 3213 5.914085 ACAGATTCAAAGTTGAGTTCTCG 57.086 39.130 5.90 5.52 38.61 4.04
3035 3231 4.394729 TCTCGGGTAGATTGTTTTTGCTT 58.605 39.130 0.00 0.00 0.00 3.91
3075 3271 3.354467 TGTTTGTACAAAAACCGGGTCT 58.646 40.909 22.14 0.00 38.93 3.85
3156 3358 4.371975 GCTCGGTGCACTGGTTAA 57.628 55.556 25.15 5.20 42.31 2.01
3217 3419 5.296780 GGAAAAGATGTGAACACTGAACAGA 59.703 40.000 8.87 0.00 0.00 3.41
3223 3425 4.058124 TGTGAACACTGAACAGAGTATGC 58.942 43.478 8.87 1.97 32.04 3.14
3236 3440 9.507329 TGAACAGAGTATGCTTTCTTTTATCTT 57.493 29.630 0.00 0.00 0.00 2.40
3245 3449 8.754230 ATGCTTTCTTTTATCTTCTTTTGCTC 57.246 30.769 0.00 0.00 0.00 4.26
3252 3473 5.886960 TTATCTTCTTTTGCTCTTGAGCC 57.113 39.130 18.48 3.20 0.00 4.70
3297 3522 2.148916 TGGAAGCAGTAACGTCTGTG 57.851 50.000 6.18 0.00 37.70 3.66
3328 3554 3.753272 TCTTTTGTGCTCTGCTTACATCC 59.247 43.478 0.00 0.00 0.00 3.51
3332 3558 0.543277 TGCTCTGCTTACATCCTGGG 59.457 55.000 0.00 0.00 0.00 4.45
3335 3561 1.556911 CTCTGCTTACATCCTGGGTGT 59.443 52.381 18.05 18.05 0.00 4.16
3347 3573 1.799258 CTGGGTGTTGTGGAAGCAGC 61.799 60.000 0.00 0.00 0.00 5.25
3357 3583 4.451652 GAAGCAGCCGCAACGAGC 62.452 66.667 0.00 0.00 42.27 5.03
3403 3638 2.540265 CTGCTCGCCAGGATTAGATT 57.460 50.000 0.00 0.00 37.93 2.40
3404 3639 2.843701 CTGCTCGCCAGGATTAGATTT 58.156 47.619 0.00 0.00 37.93 2.17
3405 3640 3.995199 CTGCTCGCCAGGATTAGATTTA 58.005 45.455 0.00 0.00 37.93 1.40
3406 3641 3.728845 TGCTCGCCAGGATTAGATTTAC 58.271 45.455 0.00 0.00 0.00 2.01
3407 3642 3.133901 TGCTCGCCAGGATTAGATTTACA 59.866 43.478 0.00 0.00 0.00 2.41
3408 3643 3.743396 GCTCGCCAGGATTAGATTTACAG 59.257 47.826 0.00 0.00 0.00 2.74
3409 3644 3.728845 TCGCCAGGATTAGATTTACAGC 58.271 45.455 0.00 0.00 0.00 4.40
3410 3645 2.808543 CGCCAGGATTAGATTTACAGCC 59.191 50.000 0.00 0.00 0.00 4.85
3411 3646 2.808543 GCCAGGATTAGATTTACAGCCG 59.191 50.000 0.00 0.00 0.00 5.52
3412 3647 3.403038 CCAGGATTAGATTTACAGCCGG 58.597 50.000 0.00 0.00 0.00 6.13
3413 3648 3.181454 CCAGGATTAGATTTACAGCCGGT 60.181 47.826 1.90 0.00 0.00 5.28
3414 3649 4.058817 CAGGATTAGATTTACAGCCGGTC 58.941 47.826 1.90 0.00 0.00 4.79
3415 3650 3.057734 GGATTAGATTTACAGCCGGTCG 58.942 50.000 1.90 0.00 0.00 4.79
3416 3651 1.930567 TTAGATTTACAGCCGGTCGC 58.069 50.000 1.90 0.00 37.98 5.19
3417 3652 0.103572 TAGATTTACAGCCGGTCGCC 59.896 55.000 1.90 0.00 38.78 5.54
3418 3653 2.124860 ATTTACAGCCGGTCGCCC 60.125 61.111 1.90 0.00 38.78 6.13
3419 3654 3.692370 ATTTACAGCCGGTCGCCCC 62.692 63.158 1.90 0.00 38.78 5.80
3432 3667 4.986708 GCCCCAAACCGGCCTCAA 62.987 66.667 0.00 0.00 40.78 3.02
3433 3668 2.203567 CCCCAAACCGGCCTCAAA 60.204 61.111 0.00 0.00 0.00 2.69
3434 3669 2.570284 CCCCAAACCGGCCTCAAAC 61.570 63.158 0.00 0.00 0.00 2.93
3435 3670 1.830408 CCCAAACCGGCCTCAAACA 60.830 57.895 0.00 0.00 0.00 2.83
3436 3671 1.362355 CCAAACCGGCCTCAAACAC 59.638 57.895 0.00 0.00 0.00 3.32
3437 3672 1.362355 CAAACCGGCCTCAAACACC 59.638 57.895 0.00 0.00 0.00 4.16
3438 3673 1.830847 AAACCGGCCTCAAACACCC 60.831 57.895 0.00 0.00 0.00 4.61
3439 3674 4.636435 ACCGGCCTCAAACACCCG 62.636 66.667 0.00 0.00 40.39 5.28
3446 3681 4.629523 TCAAACACCCGGGCGGTC 62.630 66.667 24.08 0.00 43.58 4.79
3461 3696 4.446413 GTCCGCCCGGTCACGATT 62.446 66.667 10.03 0.00 44.60 3.34
3462 3697 3.697747 TCCGCCCGGTCACGATTT 61.698 61.111 10.03 0.00 44.60 2.17
3463 3698 2.744709 CCGCCCGGTCACGATTTT 60.745 61.111 10.03 0.00 44.60 1.82
3464 3699 2.329614 CCGCCCGGTCACGATTTTT 61.330 57.895 10.03 0.00 44.60 1.94
3465 3700 1.133869 CGCCCGGTCACGATTTTTC 59.866 57.895 0.00 0.00 44.60 2.29
3466 3701 1.133869 GCCCGGTCACGATTTTTCG 59.866 57.895 0.00 0.00 44.60 3.46
3467 3702 1.791662 CCCGGTCACGATTTTTCGG 59.208 57.895 0.00 0.00 44.60 4.30
3468 3703 1.791662 CCGGTCACGATTTTTCGGG 59.208 57.895 0.00 0.00 44.60 5.14
3469 3704 0.671163 CCGGTCACGATTTTTCGGGA 60.671 55.000 0.00 0.00 43.86 5.14
3470 3705 0.719465 CGGTCACGATTTTTCGGGAG 59.281 55.000 0.00 0.00 46.85 4.30
3471 3706 3.969795 GTCACGATTTTTCGGGAGC 57.030 52.632 0.00 0.00 46.85 4.70
3472 3707 1.439679 GTCACGATTTTTCGGGAGCT 58.560 50.000 0.00 0.00 46.85 4.09
3473 3708 1.393883 GTCACGATTTTTCGGGAGCTC 59.606 52.381 4.71 4.71 46.85 4.09
3474 3709 0.727398 CACGATTTTTCGGGAGCTCC 59.273 55.000 25.59 25.59 39.14 4.70
3475 3710 0.613777 ACGATTTTTCGGGAGCTCCT 59.386 50.000 31.36 10.64 37.45 3.69
3476 3711 1.829222 ACGATTTTTCGGGAGCTCCTA 59.171 47.619 31.36 17.68 37.45 2.94
3477 3712 2.434702 ACGATTTTTCGGGAGCTCCTAT 59.565 45.455 31.36 14.94 37.45 2.57
3478 3713 3.118371 ACGATTTTTCGGGAGCTCCTATT 60.118 43.478 31.36 10.23 37.45 1.73
3479 3714 3.248602 CGATTTTTCGGGAGCTCCTATTG 59.751 47.826 31.36 18.49 35.95 1.90
3480 3715 2.038387 TTTTCGGGAGCTCCTATTGC 57.962 50.000 31.36 13.98 35.95 3.56
3481 3716 0.179084 TTTCGGGAGCTCCTATTGCG 60.179 55.000 31.36 24.55 35.95 4.85
3482 3717 1.327690 TTCGGGAGCTCCTATTGCGT 61.328 55.000 31.36 0.00 35.95 5.24
3483 3718 1.592669 CGGGAGCTCCTATTGCGTG 60.593 63.158 31.36 8.29 35.95 5.34
3484 3719 1.889573 GGGAGCTCCTATTGCGTGC 60.890 63.158 31.36 8.41 35.95 5.34
3485 3720 1.889573 GGAGCTCCTATTGCGTGCC 60.890 63.158 26.25 0.00 35.28 5.01
3486 3721 1.144936 GAGCTCCTATTGCGTGCCT 59.855 57.895 0.87 0.00 35.28 4.75
3487 3722 0.462759 GAGCTCCTATTGCGTGCCTT 60.463 55.000 0.87 0.00 35.28 4.35
3488 3723 0.462759 AGCTCCTATTGCGTGCCTTC 60.463 55.000 0.00 0.00 35.28 3.46
3489 3724 0.744414 GCTCCTATTGCGTGCCTTCA 60.744 55.000 0.00 0.00 0.00 3.02
3490 3725 1.293924 CTCCTATTGCGTGCCTTCAG 58.706 55.000 0.00 0.00 0.00 3.02
3491 3726 0.744414 TCCTATTGCGTGCCTTCAGC 60.744 55.000 0.00 0.00 44.14 4.26
3506 3741 4.803426 AGCGCCGCCGAAGAGAAG 62.803 66.667 4.98 0.00 36.29 2.85
3507 3742 4.796231 GCGCCGCCGAAGAGAAGA 62.796 66.667 0.00 0.00 36.29 2.87
3508 3743 2.126071 CGCCGCCGAAGAGAAGAA 60.126 61.111 0.00 0.00 36.29 2.52
3509 3744 1.736645 CGCCGCCGAAGAGAAGAAA 60.737 57.895 0.00 0.00 36.29 2.52
3510 3745 1.687494 CGCCGCCGAAGAGAAGAAAG 61.687 60.000 0.00 0.00 36.29 2.62
3511 3746 1.362406 GCCGCCGAAGAGAAGAAAGG 61.362 60.000 0.00 0.00 0.00 3.11
3512 3747 1.362406 CCGCCGAAGAGAAGAAAGGC 61.362 60.000 0.00 0.00 41.03 4.35
3513 3748 0.390472 CGCCGAAGAGAAGAAAGGCT 60.390 55.000 2.75 0.00 42.16 4.58
3514 3749 1.135083 CGCCGAAGAGAAGAAAGGCTA 60.135 52.381 2.75 0.00 42.16 3.93
3515 3750 2.674177 CGCCGAAGAGAAGAAAGGCTAA 60.674 50.000 2.75 0.00 42.16 3.09
3516 3751 2.673862 GCCGAAGAGAAGAAAGGCTAAC 59.326 50.000 0.00 0.00 41.21 2.34
3517 3752 3.263261 CCGAAGAGAAGAAAGGCTAACC 58.737 50.000 0.00 0.00 0.00 2.85
3518 3753 3.306780 CCGAAGAGAAGAAAGGCTAACCA 60.307 47.826 0.00 0.00 39.06 3.67
3519 3754 3.680458 CGAAGAGAAGAAAGGCTAACCAC 59.320 47.826 0.00 0.00 39.06 4.16
3520 3755 4.561734 CGAAGAGAAGAAAGGCTAACCACT 60.562 45.833 0.00 0.00 39.06 4.00
3521 3756 5.336531 CGAAGAGAAGAAAGGCTAACCACTA 60.337 44.000 0.00 0.00 39.06 2.74
3522 3757 5.669164 AGAGAAGAAAGGCTAACCACTAG 57.331 43.478 0.00 0.00 39.06 2.57
3523 3758 5.334421 AGAGAAGAAAGGCTAACCACTAGA 58.666 41.667 0.00 0.00 39.06 2.43
3524 3759 5.186215 AGAGAAGAAAGGCTAACCACTAGAC 59.814 44.000 0.00 0.00 39.06 2.59
3525 3760 4.223255 AGAAGAAAGGCTAACCACTAGACC 59.777 45.833 0.00 0.00 36.08 3.85
3526 3761 3.517612 AGAAAGGCTAACCACTAGACCA 58.482 45.455 0.00 0.00 36.08 4.02
3527 3762 3.515901 AGAAAGGCTAACCACTAGACCAG 59.484 47.826 0.00 0.00 36.08 4.00
3528 3763 1.196012 AGGCTAACCACTAGACCAGC 58.804 55.000 0.00 0.00 36.08 4.85
3529 3764 0.178301 GGCTAACCACTAGACCAGCC 59.822 60.000 0.00 3.38 41.57 4.85
3530 3765 1.196012 GCTAACCACTAGACCAGCCT 58.804 55.000 0.00 0.00 0.00 4.58
3531 3766 1.137282 GCTAACCACTAGACCAGCCTC 59.863 57.143 0.00 0.00 0.00 4.70
3532 3767 1.757699 CTAACCACTAGACCAGCCTCC 59.242 57.143 0.00 0.00 0.00 4.30
3533 3768 0.117340 AACCACTAGACCAGCCTCCT 59.883 55.000 0.00 0.00 0.00 3.69
3534 3769 0.616111 ACCACTAGACCAGCCTCCTG 60.616 60.000 0.00 0.00 38.85 3.86
3535 3770 1.519719 CACTAGACCAGCCTCCTGC 59.480 63.158 0.00 0.00 37.77 4.85
3547 3782 3.978718 GCCTCCTGCTTGTGAATAATC 57.021 47.619 0.00 0.00 36.87 1.75
3548 3783 3.282021 GCCTCCTGCTTGTGAATAATCA 58.718 45.455 0.00 0.00 36.87 2.57
3549 3784 3.065925 GCCTCCTGCTTGTGAATAATCAC 59.934 47.826 3.84 3.84 45.72 3.06
3560 3795 4.700268 TGAATAATCACAGCGCAATGTT 57.300 36.364 11.47 7.02 0.00 2.71
3561 3796 5.058149 TGAATAATCACAGCGCAATGTTT 57.942 34.783 11.47 11.01 0.00 2.83
3562 3797 5.468592 TGAATAATCACAGCGCAATGTTTT 58.531 33.333 11.47 8.37 0.00 2.43
3563 3798 5.925397 TGAATAATCACAGCGCAATGTTTTT 59.075 32.000 11.47 4.81 0.00 1.94
3564 3799 7.087007 TGAATAATCACAGCGCAATGTTTTTA 58.913 30.769 11.47 6.88 0.00 1.52
3565 3800 7.596621 TGAATAATCACAGCGCAATGTTTTTAA 59.403 29.630 11.47 0.00 0.00 1.52
3566 3801 7.881643 ATAATCACAGCGCAATGTTTTTAAA 57.118 28.000 11.47 0.00 0.00 1.52
3567 3802 5.827568 ATCACAGCGCAATGTTTTTAAAG 57.172 34.783 11.47 0.00 0.00 1.85
3568 3803 4.926244 TCACAGCGCAATGTTTTTAAAGA 58.074 34.783 11.47 0.00 0.00 2.52
3569 3804 5.344066 TCACAGCGCAATGTTTTTAAAGAA 58.656 33.333 11.47 0.00 0.00 2.52
3570 3805 5.982516 TCACAGCGCAATGTTTTTAAAGAAT 59.017 32.000 11.47 0.00 0.00 2.40
3571 3806 6.066410 CACAGCGCAATGTTTTTAAAGAATG 58.934 36.000 11.47 0.00 0.00 2.67
3572 3807 5.177327 ACAGCGCAATGTTTTTAAAGAATGG 59.823 36.000 11.47 0.00 0.00 3.16
3573 3808 5.404968 CAGCGCAATGTTTTTAAAGAATGGA 59.595 36.000 11.47 0.00 0.00 3.41
3574 3809 5.988561 AGCGCAATGTTTTTAAAGAATGGAA 59.011 32.000 11.47 0.00 0.00 3.53
3575 3810 6.481644 AGCGCAATGTTTTTAAAGAATGGAAA 59.518 30.769 11.47 0.00 0.00 3.13
3576 3811 6.573357 GCGCAATGTTTTTAAAGAATGGAAAC 59.427 34.615 0.30 0.00 0.00 2.78
3577 3812 7.518211 GCGCAATGTTTTTAAAGAATGGAAACT 60.518 33.333 0.30 0.00 32.84 2.66
3578 3813 8.973378 CGCAATGTTTTTAAAGAATGGAAACTA 58.027 29.630 0.00 0.00 32.84 2.24
3582 3817 9.893305 ATGTTTTTAAAGAATGGAAACTAGACG 57.107 29.630 0.00 0.00 32.84 4.18
3583 3818 7.858879 TGTTTTTAAAGAATGGAAACTAGACGC 59.141 33.333 0.00 0.00 32.84 5.19
3584 3819 5.773239 TTAAAGAATGGAAACTAGACGCG 57.227 39.130 3.53 3.53 0.00 6.01
3585 3820 1.641577 AGAATGGAAACTAGACGCGC 58.358 50.000 5.73 0.00 0.00 6.86
3586 3821 1.067142 AGAATGGAAACTAGACGCGCA 60.067 47.619 5.73 0.00 0.00 6.09
3587 3822 1.730064 GAATGGAAACTAGACGCGCAA 59.270 47.619 5.73 0.00 0.00 4.85
3588 3823 2.024176 ATGGAAACTAGACGCGCAAT 57.976 45.000 5.73 0.00 0.00 3.56
3589 3824 1.803334 TGGAAACTAGACGCGCAATT 58.197 45.000 5.73 0.00 0.00 2.32
3590 3825 2.147958 TGGAAACTAGACGCGCAATTT 58.852 42.857 5.73 0.00 0.00 1.82
3591 3826 3.327626 TGGAAACTAGACGCGCAATTTA 58.672 40.909 5.73 0.00 0.00 1.40
3592 3827 3.123959 TGGAAACTAGACGCGCAATTTAC 59.876 43.478 5.73 1.36 0.00 2.01
3593 3828 3.370061 GGAAACTAGACGCGCAATTTACT 59.630 43.478 5.73 0.00 0.00 2.24
3594 3829 4.563976 GGAAACTAGACGCGCAATTTACTA 59.436 41.667 5.73 0.39 0.00 1.82
3595 3830 5.446031 AAACTAGACGCGCAATTTACTAC 57.554 39.130 5.73 0.00 0.00 2.73
3596 3831 4.367386 ACTAGACGCGCAATTTACTACT 57.633 40.909 5.73 0.00 0.00 2.57
3597 3832 4.349501 ACTAGACGCGCAATTTACTACTC 58.650 43.478 5.73 0.00 0.00 2.59
3598 3833 3.226346 AGACGCGCAATTTACTACTCA 57.774 42.857 5.73 0.00 0.00 3.41
3599 3834 3.782046 AGACGCGCAATTTACTACTCAT 58.218 40.909 5.73 0.00 0.00 2.90
3600 3835 4.181578 AGACGCGCAATTTACTACTCATT 58.818 39.130 5.73 0.00 0.00 2.57
3601 3836 5.345702 AGACGCGCAATTTACTACTCATTA 58.654 37.500 5.73 0.00 0.00 1.90
3602 3837 5.231568 AGACGCGCAATTTACTACTCATTAC 59.768 40.000 5.73 0.00 0.00 1.89
3603 3838 4.865925 ACGCGCAATTTACTACTCATTACA 59.134 37.500 5.73 0.00 0.00 2.41
3604 3839 5.188194 CGCGCAATTTACTACTCATTACAC 58.812 41.667 8.75 0.00 0.00 2.90
3605 3840 5.005394 CGCGCAATTTACTACTCATTACACT 59.995 40.000 8.75 0.00 0.00 3.55
3606 3841 6.185399 GCGCAATTTACTACTCATTACACTG 58.815 40.000 0.30 0.00 0.00 3.66
3607 3842 6.183360 GCGCAATTTACTACTCATTACACTGT 60.183 38.462 0.30 0.00 0.00 3.55
3608 3843 7.009815 GCGCAATTTACTACTCATTACACTGTA 59.990 37.037 0.30 0.00 0.00 2.74
3609 3844 8.532341 CGCAATTTACTACTCATTACACTGTAG 58.468 37.037 0.00 0.00 38.53 2.74
3610 3845 9.367444 GCAATTTACTACTCATTACACTGTAGT 57.633 33.333 9.17 9.17 44.93 2.73
3645 3880 9.755804 TTCTAATTATTTGCAAACATGTTCACA 57.244 25.926 15.41 10.34 0.00 3.58
3646 3881 9.926158 TCTAATTATTTGCAAACATGTTCACAT 57.074 25.926 15.41 7.73 36.96 3.21
3652 3887 7.881643 TTTGCAAACATGTTCACATATTACC 57.118 32.000 12.39 0.00 34.26 2.85
3653 3888 6.581171 TGCAAACATGTTCACATATTACCA 57.419 33.333 12.39 0.00 34.26 3.25
3654 3889 6.986250 TGCAAACATGTTCACATATTACCAA 58.014 32.000 12.39 0.00 34.26 3.67
3655 3890 7.436933 TGCAAACATGTTCACATATTACCAAA 58.563 30.769 12.39 0.00 34.26 3.28
3656 3891 8.093307 TGCAAACATGTTCACATATTACCAAAT 58.907 29.630 12.39 0.00 34.26 2.32
3657 3892 9.579768 GCAAACATGTTCACATATTACCAAATA 57.420 29.630 12.39 0.00 34.26 1.40
3661 3896 9.474313 ACATGTTCACATATTACCAAATAAGGT 57.526 29.630 0.00 0.00 39.11 3.50
3664 3899 9.521841 TGTTCACATATTACCAAATAAGGTTCA 57.478 29.630 0.00 0.00 43.08 3.18
3667 3902 9.913310 TCACATATTACCAAATAAGGTTCATCA 57.087 29.630 0.00 0.00 43.08 3.07
3668 3903 9.950680 CACATATTACCAAATAAGGTTCATCAC 57.049 33.333 0.00 0.00 43.08 3.06
3669 3904 9.693739 ACATATTACCAAATAAGGTTCATCACA 57.306 29.630 0.00 0.00 43.08 3.58
3673 3908 9.874205 ATTACCAAATAAGGTTCATCACATTTG 57.126 29.630 0.00 0.00 43.08 2.32
3674 3909 7.537596 ACCAAATAAGGTTCATCACATTTGA 57.462 32.000 6.45 0.00 39.34 2.69
3675 3910 7.961351 ACCAAATAAGGTTCATCACATTTGAA 58.039 30.769 6.45 0.00 39.34 2.69
3676 3911 8.428063 ACCAAATAAGGTTCATCACATTTGAAA 58.572 29.630 6.45 0.00 39.34 2.69
3677 3912 9.270640 CCAAATAAGGTTCATCACATTTGAAAA 57.729 29.630 6.45 0.00 36.11 2.29
3708 3943 8.703604 TTATTGGTTTTGAAAAACGTTCATCA 57.296 26.923 0.00 6.57 47.00 3.07
3709 3944 7.602517 ATTGGTTTTGAAAAACGTTCATCAA 57.397 28.000 19.10 19.10 47.00 2.57
3710 3945 7.421530 TTGGTTTTGAAAAACGTTCATCAAA 57.578 28.000 25.41 25.41 47.00 2.69
3711 3946 7.421530 TGGTTTTGAAAAACGTTCATCAAAA 57.578 28.000 30.39 30.39 47.00 2.44
3712 3947 8.034058 TGGTTTTGAAAAACGTTCATCAAAAT 57.966 26.923 33.26 7.90 46.95 1.82
3713 3948 8.507249 TGGTTTTGAAAAACGTTCATCAAAATT 58.493 25.926 33.26 12.49 46.95 1.82
3714 3949 8.784176 GGTTTTGAAAAACGTTCATCAAAATTG 58.216 29.630 33.26 0.00 46.95 2.32
3715 3950 9.535270 GTTTTGAAAAACGTTCATCAAAATTGA 57.465 25.926 33.26 21.10 46.95 2.57
3769 4004 9.611284 TTCATCAAACTTGAAAATAGTTCATCG 57.389 29.630 0.00 0.00 41.13 3.84
3770 4005 8.998377 TCATCAAACTTGAAAATAGTTCATCGA 58.002 29.630 0.00 0.00 41.13 3.59
3771 4006 9.611284 CATCAAACTTGAAAATAGTTCATCGAA 57.389 29.630 0.00 0.00 41.13 3.71
3786 4021 8.870160 AGTTCATCGAATTTGAAAAACATTCA 57.130 26.923 18.58 0.00 35.03 2.57
3787 4022 9.480053 AGTTCATCGAATTTGAAAAACATTCAT 57.520 25.926 18.58 3.17 35.03 2.57
3788 4023 9.731519 GTTCATCGAATTTGAAAAACATTCATC 57.268 29.630 14.33 0.00 35.03 2.92
3789 4024 8.160603 TCATCGAATTTGAAAAACATTCATCG 57.839 30.769 0.00 6.41 0.00 3.84
3790 4025 8.020244 TCATCGAATTTGAAAAACATTCATCGA 58.980 29.630 14.08 14.08 0.00 3.59
3791 4026 8.637704 CATCGAATTTGAAAAACATTCATCGAA 58.362 29.630 15.11 0.00 0.00 3.71
3792 4027 8.567369 TCGAATTTGAAAAACATTCATCGAAA 57.433 26.923 10.96 0.00 0.00 3.46
3793 4028 9.190858 TCGAATTTGAAAAACATTCATCGAAAT 57.809 25.926 10.96 0.00 0.00 2.17
3794 4029 9.796062 CGAATTTGAAAAACATTCATCGAAATT 57.204 25.926 6.77 0.00 0.00 1.82
3836 4071 8.940768 TTTTTCAAGAAAAGTTCATCGGATTT 57.059 26.923 7.88 0.00 40.83 2.17
3837 4072 7.928908 TTTCAAGAAAAGTTCATCGGATTTG 57.071 32.000 0.00 0.00 0.00 2.32
3838 4073 6.875948 TCAAGAAAAGTTCATCGGATTTGA 57.124 33.333 0.00 0.00 0.00 2.69
3839 4074 7.270757 TCAAGAAAAGTTCATCGGATTTGAA 57.729 32.000 0.00 0.00 0.00 2.69
3840 4075 7.711846 TCAAGAAAAGTTCATCGGATTTGAAA 58.288 30.769 0.00 0.00 35.03 2.69
3841 4076 8.194104 TCAAGAAAAGTTCATCGGATTTGAAAA 58.806 29.630 0.00 0.00 35.03 2.29
3842 4077 8.816144 CAAGAAAAGTTCATCGGATTTGAAAAA 58.184 29.630 0.00 0.00 35.03 1.94
3913 4148 9.958234 TTATCAAATTTGACAAAAGTTCATCGA 57.042 25.926 22.71 0.00 40.49 3.59
3914 4149 8.870160 ATCAAATTTGACAAAAGTTCATCGAA 57.130 26.923 22.71 0.00 40.49 3.71
3915 4150 8.870160 TCAAATTTGACAAAAGTTCATCGAAT 57.130 26.923 16.91 0.00 31.52 3.34
3916 4151 9.311916 TCAAATTTGACAAAAGTTCATCGAATT 57.688 25.926 16.91 0.00 36.95 2.17
3917 4152 9.919348 CAAATTTGACAAAAGTTCATCGAATTT 57.081 25.926 13.08 12.15 42.16 1.82
3918 4153 9.919348 AAATTTGACAAAAGTTCATCGAATTTG 57.081 25.926 4.41 0.00 40.89 2.32
3919 4154 7.462109 TTTGACAAAAGTTCATCGAATTTGG 57.538 32.000 0.00 0.00 35.77 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.227943 GCTGCACTGGTCCTTCACA 60.228 57.895 0.00 0.00 0.00 3.58
12 13 4.269523 TGGTGGCTGCACTGGTCC 62.270 66.667 0.50 0.00 0.00 4.46
96 97 3.497763 CCACAAAGGTATGGACAGTGGAA 60.498 47.826 0.00 0.00 45.92 3.53
460 475 2.657237 CCTCCCAACGCTTCGACT 59.343 61.111 0.00 0.00 0.00 4.18
497 513 3.625897 CCCGTGGCCAGTCTGTCA 61.626 66.667 5.11 0.00 0.00 3.58
552 576 1.305201 GCTCGGTTTGAGGTGAAACA 58.695 50.000 0.00 0.00 45.38 2.83
561 585 0.028770 CAAAGTTGCGCTCGGTTTGA 59.971 50.000 9.73 0.00 31.10 2.69
587 611 1.519408 CGTCCGTTTTTGACCCATCT 58.481 50.000 0.00 0.00 0.00 2.90
618 642 2.026522 CGGCCTCAAACGGACAAAA 58.973 52.632 0.00 0.00 30.13 2.44
669 693 1.158434 GTCCGGGTGCGTTCATTTAA 58.842 50.000 0.00 0.00 0.00 1.52
670 694 0.035036 TGTCCGGGTGCGTTCATTTA 59.965 50.000 0.00 0.00 0.00 1.40
676 700 1.671054 CATCTTGTCCGGGTGCGTT 60.671 57.895 0.00 0.00 0.00 4.84
697 721 4.308458 CCAACTCCCACCACGCGA 62.308 66.667 15.93 0.00 0.00 5.87
701 725 2.978010 CACGCCAACTCCCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
702 726 3.164977 TCACGCCAACTCCCACCA 61.165 61.111 0.00 0.00 0.00 4.17
703 727 2.358737 CTCACGCCAACTCCCACC 60.359 66.667 0.00 0.00 0.00 4.61
705 729 3.059982 CTCTCACGCCAACTCCCA 58.940 61.111 0.00 0.00 0.00 4.37
706 730 2.435059 GCTCTCACGCCAACTCCC 60.435 66.667 0.00 0.00 0.00 4.30
724 748 6.931281 CCCATTTTCTTTCTTTTTCCTTCCTC 59.069 38.462 0.00 0.00 0.00 3.71
767 791 7.023575 GTCGACTACCGTTTTCTATTCTACAA 58.976 38.462 8.70 0.00 39.75 2.41
769 793 5.674580 CGTCGACTACCGTTTTCTATTCTAC 59.325 44.000 14.70 0.00 39.75 2.59
895 931 2.224018 GCTGATCTGATCTGACCTGACC 60.224 54.545 23.55 4.98 0.00 4.02
896 932 2.694628 AGCTGATCTGATCTGACCTGAC 59.305 50.000 23.55 8.49 0.00 3.51
897 933 2.957680 GAGCTGATCTGATCTGACCTGA 59.042 50.000 23.55 0.89 0.00 3.86
898 934 2.694109 TGAGCTGATCTGATCTGACCTG 59.306 50.000 23.55 0.41 0.00 4.00
902 938 1.687660 GCCTGAGCTGATCTGATCTGA 59.312 52.381 23.55 4.63 35.50 3.27
1089 1137 1.729470 GGAGCTTCTCGAGGATGCGA 61.729 60.000 13.56 0.00 45.92 5.10
1243 1291 0.471211 ACGAAGTGAAGGGGGTGAGA 60.471 55.000 0.00 0.00 42.51 3.27
1245 1293 0.395312 GAACGAAGTGAAGGGGGTGA 59.605 55.000 0.00 0.00 45.00 4.02
1246 1294 0.107831 TGAACGAAGTGAAGGGGGTG 59.892 55.000 0.00 0.00 45.00 4.61
1247 1295 0.841289 TTGAACGAAGTGAAGGGGGT 59.159 50.000 0.00 0.00 45.00 4.95
1248 1296 1.975660 TTTGAACGAAGTGAAGGGGG 58.024 50.000 0.00 0.00 45.00 5.40
1266 1314 1.699730 CCGAAGTGAAGGGGGTTTTT 58.300 50.000 0.00 0.00 0.00 1.94
1267 1315 0.826256 GCCGAAGTGAAGGGGGTTTT 60.826 55.000 0.00 0.00 0.00 2.43
1268 1316 1.228459 GCCGAAGTGAAGGGGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
1269 1317 2.434774 GCCGAAGTGAAGGGGGTT 59.565 61.111 0.00 0.00 0.00 4.11
1270 1318 3.647771 GGCCGAAGTGAAGGGGGT 61.648 66.667 0.00 0.00 0.00 4.95
1271 1319 3.330720 AGGCCGAAGTGAAGGGGG 61.331 66.667 0.00 0.00 0.00 5.40
1272 1320 0.976073 TAGAGGCCGAAGTGAAGGGG 60.976 60.000 0.00 0.00 0.00 4.79
1273 1321 0.461961 CTAGAGGCCGAAGTGAAGGG 59.538 60.000 0.00 0.00 0.00 3.95
1274 1322 1.187087 ACTAGAGGCCGAAGTGAAGG 58.813 55.000 6.85 0.00 0.00 3.46
1275 1323 3.444388 ACTAACTAGAGGCCGAAGTGAAG 59.556 47.826 8.23 10.69 0.00 3.02
1276 1324 3.428532 ACTAACTAGAGGCCGAAGTGAA 58.571 45.455 8.23 0.90 0.00 3.18
1277 1325 3.015327 GACTAACTAGAGGCCGAAGTGA 58.985 50.000 8.23 1.00 0.00 3.41
1278 1326 2.753452 TGACTAACTAGAGGCCGAAGTG 59.247 50.000 8.23 0.98 0.00 3.16
1279 1327 3.018149 CTGACTAACTAGAGGCCGAAGT 58.982 50.000 0.00 0.00 0.00 3.01
1280 1328 3.018149 ACTGACTAACTAGAGGCCGAAG 58.982 50.000 0.00 0.00 0.00 3.79
1281 1329 3.083122 ACTGACTAACTAGAGGCCGAA 57.917 47.619 0.00 0.00 0.00 4.30
1284 1332 3.685272 GCAAAACTGACTAACTAGAGGCC 59.315 47.826 0.00 0.00 0.00 5.19
1303 1351 3.430042 AGAGCTTCCTCAATTCAGCAA 57.570 42.857 0.00 0.00 40.68 3.91
1313 1361 4.116238 CCGAATCTAACAAGAGCTTCCTC 58.884 47.826 0.00 0.00 38.42 3.71
1401 1452 1.293924 CTGTCCATGATGAACCGAGC 58.706 55.000 0.00 0.00 0.00 5.03
1402 1453 2.680312 ACTGTCCATGATGAACCGAG 57.320 50.000 0.00 0.00 0.00 4.63
1489 1541 6.740110 ACGAGCAGGATAGTTACAGATAAAG 58.260 40.000 0.00 0.00 0.00 1.85
1491 1543 6.096423 ACAACGAGCAGGATAGTTACAGATAA 59.904 38.462 0.00 0.00 0.00 1.75
1492 1544 5.593095 ACAACGAGCAGGATAGTTACAGATA 59.407 40.000 0.00 0.00 0.00 1.98
1493 1545 4.402793 ACAACGAGCAGGATAGTTACAGAT 59.597 41.667 0.00 0.00 0.00 2.90
1494 1546 3.762288 ACAACGAGCAGGATAGTTACAGA 59.238 43.478 0.00 0.00 0.00 3.41
1495 1547 4.111375 ACAACGAGCAGGATAGTTACAG 57.889 45.455 0.00 0.00 0.00 2.74
1496 1548 4.530710 AACAACGAGCAGGATAGTTACA 57.469 40.909 0.00 0.00 0.00 2.41
1497 1549 5.865552 TGTTAACAACGAGCAGGATAGTTAC 59.134 40.000 5.64 0.00 0.00 2.50
1498 1550 5.865552 GTGTTAACAACGAGCAGGATAGTTA 59.134 40.000 10.51 0.00 0.00 2.24
1499 1551 4.689345 GTGTTAACAACGAGCAGGATAGTT 59.311 41.667 10.51 0.00 0.00 2.24
1500 1552 4.021368 AGTGTTAACAACGAGCAGGATAGT 60.021 41.667 10.51 0.00 0.00 2.12
1502 1554 4.530710 AGTGTTAACAACGAGCAGGATA 57.469 40.909 10.51 0.00 0.00 2.59
1511 1566 4.223659 GGCATGGTAAAGTGTTAACAACG 58.776 43.478 10.51 0.00 40.30 4.10
1516 1571 4.762765 ACGAATGGCATGGTAAAGTGTTAA 59.237 37.500 0.00 0.00 0.00 2.01
1526 1581 2.127271 TCATGAACGAATGGCATGGT 57.873 45.000 0.00 0.00 39.76 3.55
1534 1589 2.171237 TCTCCCTGCATCATGAACGAAT 59.829 45.455 0.00 0.00 0.00 3.34
1536 1591 1.137675 CTCTCCCTGCATCATGAACGA 59.862 52.381 0.00 0.00 0.00 3.85
1537 1592 1.134580 ACTCTCCCTGCATCATGAACG 60.135 52.381 0.00 0.00 0.00 3.95
1666 1724 1.915141 AGAACTCCATTTGCTGGTGG 58.085 50.000 0.00 0.00 46.08 4.61
1752 1810 1.820519 GTCCCAAATGCAAGCATCTCA 59.179 47.619 8.14 0.00 35.31 3.27
1781 1839 5.457148 CAGCACTGCTAACTAAGAAGATACG 59.543 44.000 2.39 0.00 36.40 3.06
1786 1844 3.265791 CCCAGCACTGCTAACTAAGAAG 58.734 50.000 2.39 0.00 36.40 2.85
1829 1887 2.552315 CGGTGTGTATCTGCAGGTTTTT 59.448 45.455 15.13 0.00 0.00 1.94
1879 1937 3.356639 GATGCGGTCGCCTCTGTCA 62.357 63.158 12.94 0.00 41.09 3.58
1936 1994 1.795170 GCTTGCGGAAGTGAAAGCCA 61.795 55.000 18.40 0.00 37.84 4.75
1939 1997 2.589014 GATTGCTTGCGGAAGTGAAAG 58.411 47.619 18.40 0.00 0.00 2.62
2042 2100 9.418510 GTACTCGAAAGTTAACAAGAAGAAAAC 57.581 33.333 8.61 0.00 36.92 2.43
2062 2120 2.586258 ATTGGCAGCTAGTGTACTCG 57.414 50.000 0.00 0.00 0.00 4.18
2075 2133 4.436113 TGCTACTGATCCATAATTGGCA 57.564 40.909 0.00 0.00 43.29 4.92
2124 2182 4.215109 AGGGACTTGCACACTGTAAAAAT 58.785 39.130 0.00 0.00 27.25 1.82
2234 2293 3.819368 TCAGAAATGACAGTTTCCAGCA 58.181 40.909 0.00 0.00 38.55 4.41
2504 2685 7.180229 TCCACTAATCACAAGATTTCCTAGTCA 59.820 37.037 0.00 0.00 41.64 3.41
2521 2702 6.073003 GCACTTGCCAATAGTATCCACTAATC 60.073 42.308 0.00 0.00 36.58 1.75
2570 2761 9.449719 AAATAAAACTCTGGTGGTGTTATAGAG 57.550 33.333 0.00 0.00 40.44 2.43
2578 2769 6.391227 AACAGAAATAAAACTCTGGTGGTG 57.609 37.500 4.27 0.00 42.83 4.17
2607 2798 7.309683 CCTTATATTTAGGAACGGAGGGAGTAC 60.310 44.444 0.00 0.00 34.56 2.73
2612 2803 4.286291 AGCCTTATATTTAGGAACGGAGGG 59.714 45.833 7.56 0.00 34.56 4.30
2653 2844 6.311445 ACTCATTTTGCTCTGTATGTAGTTCG 59.689 38.462 0.00 0.00 0.00 3.95
2655 2846 7.161404 TCACTCATTTTGCTCTGTATGTAGTT 58.839 34.615 0.00 0.00 0.00 2.24
2711 2904 4.389890 TTTCAATACGGGCTACATACGT 57.610 40.909 0.00 0.00 43.88 3.57
2759 2952 6.901300 AGGTTTAACTGACATATACTCCCTCA 59.099 38.462 0.00 0.00 0.00 3.86
2769 2962 5.133941 TGCCAAACAGGTTTAACTGACATA 58.866 37.500 1.02 0.00 40.97 2.29
2814 3007 0.100325 CCGCTCTGCAACAAACACAA 59.900 50.000 0.00 0.00 0.00 3.33
2841 3034 1.021390 GTAGCAGCACAATGACCGCT 61.021 55.000 0.00 0.00 36.10 5.52
2919 3112 3.257375 TGTATGGTGTCGAGCTACTGTTT 59.743 43.478 0.00 0.00 0.00 2.83
2978 3174 4.846779 TCTGTTGACCAAAACATAAGGC 57.153 40.909 0.00 0.00 39.25 4.35
3003 3199 5.221661 ACAATCTACCCGAGAACTCAACTTT 60.222 40.000 2.78 0.00 37.85 2.66
3004 3200 4.283722 ACAATCTACCCGAGAACTCAACTT 59.716 41.667 2.78 0.00 37.85 2.66
3017 3213 8.520351 ACTTGTATAAGCAAAAACAATCTACCC 58.480 33.333 0.00 0.00 37.43 3.69
3075 3271 5.534407 ACGACATTTCATACTGTACACACA 58.466 37.500 0.00 0.00 0.00 3.72
3217 3419 9.631452 GCAAAAGAAGATAAAAGAAAGCATACT 57.369 29.630 0.00 0.00 0.00 2.12
3223 3425 9.956720 TCAAGAGCAAAAGAAGATAAAAGAAAG 57.043 29.630 0.00 0.00 0.00 2.62
3245 3449 3.066342 CCATAGCTGACAATTGGCTCAAG 59.934 47.826 13.62 2.53 37.50 3.02
3252 3473 4.825634 ACATCCATCCATAGCTGACAATTG 59.174 41.667 3.24 3.24 0.00 2.32
3297 3522 4.438472 GCAGAGCACAAAAGATTCAGATCC 60.438 45.833 0.00 0.00 32.44 3.36
3328 3554 1.799258 GCTGCTTCCACAACACCCAG 61.799 60.000 0.00 0.00 0.00 4.45
3332 3558 2.639286 CGGCTGCTTCCACAACAC 59.361 61.111 0.00 0.00 0.00 3.32
3335 3561 2.518112 TTGCGGCTGCTTCCACAA 60.518 55.556 20.27 0.00 43.34 3.33
3357 3583 1.200483 CTGGCATGCTCTAACGTACG 58.800 55.000 18.92 15.01 0.00 3.67
3362 3588 0.394899 AAGGCCTGGCATGCTCTAAC 60.395 55.000 22.05 5.91 0.00 2.34
3416 3651 2.203567 TTTGAGGCCGGTTTGGGG 60.204 61.111 1.90 0.00 38.63 4.96
3417 3652 1.830408 TGTTTGAGGCCGGTTTGGG 60.830 57.895 1.90 0.00 38.63 4.12
3418 3653 1.362355 GTGTTTGAGGCCGGTTTGG 59.638 57.895 1.90 0.00 42.50 3.28
3419 3654 1.362355 GGTGTTTGAGGCCGGTTTG 59.638 57.895 1.90 0.00 0.00 2.93
3420 3655 1.830847 GGGTGTTTGAGGCCGGTTT 60.831 57.895 1.90 0.00 0.00 3.27
3421 3656 2.203437 GGGTGTTTGAGGCCGGTT 60.203 61.111 1.90 0.00 0.00 4.44
3422 3657 4.636435 CGGGTGTTTGAGGCCGGT 62.636 66.667 1.90 0.00 0.00 5.28
3444 3679 3.945304 AAATCGTGACCGGGCGGAC 62.945 63.158 6.32 0.00 38.96 4.79
3445 3680 2.734948 AAAAATCGTGACCGGGCGGA 62.735 55.000 6.32 4.46 38.96 5.54
3446 3681 2.248274 GAAAAATCGTGACCGGGCGG 62.248 60.000 6.32 0.00 42.03 6.13
3447 3682 1.133869 GAAAAATCGTGACCGGGCG 59.866 57.895 6.32 7.78 33.95 6.13
3448 3683 1.133869 CGAAAAATCGTGACCGGGC 59.866 57.895 6.32 1.57 33.95 6.13
3449 3684 1.791662 CCGAAAAATCGTGACCGGG 59.208 57.895 6.32 0.00 33.94 5.73
3450 3685 0.671163 TCCCGAAAAATCGTGACCGG 60.671 55.000 0.00 0.00 36.98 5.28
3451 3686 0.719465 CTCCCGAAAAATCGTGACCG 59.281 55.000 0.00 0.00 0.00 4.79
3452 3687 0.446616 GCTCCCGAAAAATCGTGACC 59.553 55.000 0.00 0.00 0.00 4.02
3453 3688 1.393883 GAGCTCCCGAAAAATCGTGAC 59.606 52.381 0.87 0.00 0.00 3.67
3454 3689 1.674817 GGAGCTCCCGAAAAATCGTGA 60.675 52.381 23.19 0.00 0.00 4.35
3455 3690 0.727398 GGAGCTCCCGAAAAATCGTG 59.273 55.000 23.19 0.00 0.00 4.35
3456 3691 0.613777 AGGAGCTCCCGAAAAATCGT 59.386 50.000 29.54 3.28 40.87 3.73
3457 3692 2.596904 TAGGAGCTCCCGAAAAATCG 57.403 50.000 29.54 0.00 40.87 3.34
3458 3693 3.003793 GCAATAGGAGCTCCCGAAAAATC 59.996 47.826 29.54 7.53 40.87 2.17
3459 3694 2.952310 GCAATAGGAGCTCCCGAAAAAT 59.048 45.455 29.54 11.45 40.87 1.82
3460 3695 2.365582 GCAATAGGAGCTCCCGAAAAA 58.634 47.619 29.54 8.47 40.87 1.94
3461 3696 1.742411 CGCAATAGGAGCTCCCGAAAA 60.742 52.381 29.54 10.32 40.87 2.29
3462 3697 0.179084 CGCAATAGGAGCTCCCGAAA 60.179 55.000 29.54 12.94 40.87 3.46
3463 3698 1.327690 ACGCAATAGGAGCTCCCGAA 61.328 55.000 29.54 15.61 40.87 4.30
3464 3699 1.756950 ACGCAATAGGAGCTCCCGA 60.757 57.895 29.54 18.19 40.87 5.14
3465 3700 1.592669 CACGCAATAGGAGCTCCCG 60.593 63.158 29.54 25.23 40.87 5.14
3466 3701 1.889573 GCACGCAATAGGAGCTCCC 60.890 63.158 29.54 12.47 36.42 4.30
3467 3702 1.889573 GGCACGCAATAGGAGCTCC 60.890 63.158 26.22 26.22 0.00 4.70
3468 3703 0.462759 AAGGCACGCAATAGGAGCTC 60.463 55.000 4.71 4.71 0.00 4.09
3469 3704 0.462759 GAAGGCACGCAATAGGAGCT 60.463 55.000 0.00 0.00 0.00 4.09
3470 3705 0.744414 TGAAGGCACGCAATAGGAGC 60.744 55.000 0.00 0.00 0.00 4.70
3471 3706 1.293924 CTGAAGGCACGCAATAGGAG 58.706 55.000 0.00 0.00 0.00 3.69
3472 3707 0.744414 GCTGAAGGCACGCAATAGGA 60.744 55.000 0.00 0.00 41.35 2.94
3473 3708 1.723870 GCTGAAGGCACGCAATAGG 59.276 57.895 0.00 0.00 41.35 2.57
3474 3709 1.349627 CGCTGAAGGCACGCAATAG 59.650 57.895 0.00 0.00 41.91 1.73
3475 3710 3.485110 CGCTGAAGGCACGCAATA 58.515 55.556 0.00 0.00 41.91 1.90
3489 3724 4.803426 CTTCTCTTCGGCGGCGCT 62.803 66.667 32.30 0.00 0.00 5.92
3490 3725 4.796231 TCTTCTCTTCGGCGGCGC 62.796 66.667 28.25 26.17 0.00 6.53
3491 3726 1.687494 CTTTCTTCTCTTCGGCGGCG 61.687 60.000 27.15 27.15 0.00 6.46
3492 3727 1.362406 CCTTTCTTCTCTTCGGCGGC 61.362 60.000 7.21 0.00 0.00 6.53
3493 3728 1.362406 GCCTTTCTTCTCTTCGGCGG 61.362 60.000 7.21 0.00 0.00 6.13
3494 3729 0.390472 AGCCTTTCTTCTCTTCGGCG 60.390 55.000 0.00 0.00 42.16 6.46
3495 3730 2.673862 GTTAGCCTTTCTTCTCTTCGGC 59.326 50.000 0.00 0.00 37.80 5.54
3496 3731 3.263261 GGTTAGCCTTTCTTCTCTTCGG 58.737 50.000 0.00 0.00 0.00 4.30
3497 3732 3.680458 GTGGTTAGCCTTTCTTCTCTTCG 59.320 47.826 0.00 0.00 35.27 3.79
3498 3733 4.900684 AGTGGTTAGCCTTTCTTCTCTTC 58.099 43.478 0.00 0.00 35.27 2.87
3499 3734 4.984146 AGTGGTTAGCCTTTCTTCTCTT 57.016 40.909 0.00 0.00 35.27 2.85
3500 3735 5.186215 GTCTAGTGGTTAGCCTTTCTTCTCT 59.814 44.000 0.00 0.00 35.27 3.10
3501 3736 5.412640 GTCTAGTGGTTAGCCTTTCTTCTC 58.587 45.833 0.00 0.00 35.27 2.87
3502 3737 4.223255 GGTCTAGTGGTTAGCCTTTCTTCT 59.777 45.833 0.00 0.00 35.27 2.85
3503 3738 4.020485 TGGTCTAGTGGTTAGCCTTTCTTC 60.020 45.833 0.00 0.00 35.27 2.87
3504 3739 3.908103 TGGTCTAGTGGTTAGCCTTTCTT 59.092 43.478 0.00 0.00 35.27 2.52
3505 3740 3.515901 CTGGTCTAGTGGTTAGCCTTTCT 59.484 47.826 0.00 0.00 35.27 2.52
3506 3741 3.863041 CTGGTCTAGTGGTTAGCCTTTC 58.137 50.000 0.00 0.00 35.27 2.62
3507 3742 2.027100 GCTGGTCTAGTGGTTAGCCTTT 60.027 50.000 0.00 0.00 35.27 3.11
3508 3743 1.555533 GCTGGTCTAGTGGTTAGCCTT 59.444 52.381 0.00 0.00 35.27 4.35
3509 3744 1.196012 GCTGGTCTAGTGGTTAGCCT 58.804 55.000 0.00 0.00 35.27 4.58
3510 3745 0.178301 GGCTGGTCTAGTGGTTAGCC 59.822 60.000 0.00 0.00 43.20 3.93
3511 3746 1.137282 GAGGCTGGTCTAGTGGTTAGC 59.863 57.143 0.00 0.00 0.00 3.09
3512 3747 1.757699 GGAGGCTGGTCTAGTGGTTAG 59.242 57.143 0.00 0.00 0.00 2.34
3513 3748 1.361543 AGGAGGCTGGTCTAGTGGTTA 59.638 52.381 0.00 0.00 0.00 2.85
3514 3749 0.117340 AGGAGGCTGGTCTAGTGGTT 59.883 55.000 0.00 0.00 0.00 3.67
3515 3750 0.616111 CAGGAGGCTGGTCTAGTGGT 60.616 60.000 0.00 0.00 0.00 4.16
3516 3751 1.965754 GCAGGAGGCTGGTCTAGTGG 61.966 65.000 0.00 0.00 40.25 4.00
3517 3752 1.519719 GCAGGAGGCTGGTCTAGTG 59.480 63.158 0.00 0.00 40.25 2.74
3518 3753 4.042251 GCAGGAGGCTGGTCTAGT 57.958 61.111 0.00 0.00 40.25 2.57
3527 3762 3.282021 TGATTATTCACAAGCAGGAGGC 58.718 45.455 0.00 0.00 45.30 4.70
3539 3774 4.700268 AACATTGCGCTGTGATTATTCA 57.300 36.364 17.34 0.00 0.00 2.57
3540 3775 6.393720 AAAAACATTGCGCTGTGATTATTC 57.606 33.333 17.34 0.00 0.00 1.75
3541 3776 7.881643 TTAAAAACATTGCGCTGTGATTATT 57.118 28.000 17.34 11.30 0.00 1.40
3542 3777 7.812191 TCTTTAAAAACATTGCGCTGTGATTAT 59.188 29.630 17.34 5.64 0.00 1.28
3543 3778 7.142021 TCTTTAAAAACATTGCGCTGTGATTA 58.858 30.769 17.34 10.27 0.00 1.75
3544 3779 5.982516 TCTTTAAAAACATTGCGCTGTGATT 59.017 32.000 17.34 10.14 0.00 2.57
3545 3780 5.527951 TCTTTAAAAACATTGCGCTGTGAT 58.472 33.333 17.34 4.81 0.00 3.06
3546 3781 4.926244 TCTTTAAAAACATTGCGCTGTGA 58.074 34.783 17.34 0.58 0.00 3.58
3547 3782 5.633996 TTCTTTAAAAACATTGCGCTGTG 57.366 34.783 9.73 10.13 0.00 3.66
3548 3783 5.177327 CCATTCTTTAAAAACATTGCGCTGT 59.823 36.000 9.73 1.80 0.00 4.40
3549 3784 5.404968 TCCATTCTTTAAAAACATTGCGCTG 59.595 36.000 9.73 0.99 0.00 5.18
3550 3785 5.537188 TCCATTCTTTAAAAACATTGCGCT 58.463 33.333 9.73 0.00 0.00 5.92
3551 3786 5.837586 TCCATTCTTTAAAAACATTGCGC 57.162 34.783 0.00 0.00 0.00 6.09
3552 3787 7.850501 AGTTTCCATTCTTTAAAAACATTGCG 58.149 30.769 0.00 0.00 33.37 4.85
3556 3791 9.893305 CGTCTAGTTTCCATTCTTTAAAAACAT 57.107 29.630 0.00 0.00 33.37 2.71
3557 3792 7.858879 GCGTCTAGTTTCCATTCTTTAAAAACA 59.141 33.333 0.00 0.00 33.37 2.83
3558 3793 7.059147 CGCGTCTAGTTTCCATTCTTTAAAAAC 59.941 37.037 0.00 0.00 0.00 2.43
3559 3794 7.073265 CGCGTCTAGTTTCCATTCTTTAAAAA 58.927 34.615 0.00 0.00 0.00 1.94
3560 3795 6.595794 CGCGTCTAGTTTCCATTCTTTAAAA 58.404 36.000 0.00 0.00 0.00 1.52
3561 3796 5.390145 GCGCGTCTAGTTTCCATTCTTTAAA 60.390 40.000 8.43 0.00 0.00 1.52
3562 3797 4.092383 GCGCGTCTAGTTTCCATTCTTTAA 59.908 41.667 8.43 0.00 0.00 1.52
3563 3798 3.615496 GCGCGTCTAGTTTCCATTCTTTA 59.385 43.478 8.43 0.00 0.00 1.85
3564 3799 2.415512 GCGCGTCTAGTTTCCATTCTTT 59.584 45.455 8.43 0.00 0.00 2.52
3565 3800 2.000447 GCGCGTCTAGTTTCCATTCTT 59.000 47.619 8.43 0.00 0.00 2.52
3566 3801 1.067142 TGCGCGTCTAGTTTCCATTCT 60.067 47.619 8.43 0.00 0.00 2.40
3567 3802 1.355971 TGCGCGTCTAGTTTCCATTC 58.644 50.000 8.43 0.00 0.00 2.67
3568 3803 1.803334 TTGCGCGTCTAGTTTCCATT 58.197 45.000 8.43 0.00 0.00 3.16
3569 3804 2.024176 ATTGCGCGTCTAGTTTCCAT 57.976 45.000 8.43 0.00 0.00 3.41
3570 3805 1.803334 AATTGCGCGTCTAGTTTCCA 58.197 45.000 8.43 0.00 0.00 3.53
3571 3806 2.894307 AAATTGCGCGTCTAGTTTCC 57.106 45.000 8.43 0.00 0.00 3.13
3572 3807 4.579270 AGTAAATTGCGCGTCTAGTTTC 57.421 40.909 8.43 1.25 0.00 2.78
3573 3808 5.166398 AGTAGTAAATTGCGCGTCTAGTTT 58.834 37.500 8.43 6.90 0.00 2.66
3574 3809 4.741342 AGTAGTAAATTGCGCGTCTAGTT 58.259 39.130 8.43 5.49 0.00 2.24
3575 3810 4.142534 TGAGTAGTAAATTGCGCGTCTAGT 60.143 41.667 8.43 1.96 0.00 2.57
3576 3811 4.348656 TGAGTAGTAAATTGCGCGTCTAG 58.651 43.478 8.43 0.00 0.00 2.43
3577 3812 4.359971 TGAGTAGTAAATTGCGCGTCTA 57.640 40.909 8.43 0.00 0.00 2.59
3578 3813 3.226346 TGAGTAGTAAATTGCGCGTCT 57.774 42.857 8.43 0.00 0.00 4.18
3579 3814 4.516092 AATGAGTAGTAAATTGCGCGTC 57.484 40.909 8.43 0.00 0.00 5.19
3580 3815 4.865925 TGTAATGAGTAGTAAATTGCGCGT 59.134 37.500 8.43 0.00 0.00 6.01
3581 3816 5.005394 AGTGTAATGAGTAGTAAATTGCGCG 59.995 40.000 0.00 0.00 33.41 6.86
3582 3817 6.183360 ACAGTGTAATGAGTAGTAAATTGCGC 60.183 38.462 0.00 0.00 0.00 6.09
3583 3818 7.290857 ACAGTGTAATGAGTAGTAAATTGCG 57.709 36.000 0.00 0.00 0.00 4.85
3584 3819 9.367444 ACTACAGTGTAATGAGTAGTAAATTGC 57.633 33.333 4.21 0.00 43.72 3.56
3619 3854 9.755804 TGTGAACATGTTTGCAAATAATTAGAA 57.244 25.926 16.21 0.00 0.00 2.10
3620 3855 9.926158 ATGTGAACATGTTTGCAAATAATTAGA 57.074 25.926 16.21 0.21 34.83 2.10
3626 3861 9.579768 GGTAATATGTGAACATGTTTGCAAATA 57.420 29.630 16.21 13.62 38.39 1.40
3627 3862 8.093307 TGGTAATATGTGAACATGTTTGCAAAT 58.907 29.630 16.21 10.01 38.39 2.32
3628 3863 7.436933 TGGTAATATGTGAACATGTTTGCAAA 58.563 30.769 13.36 8.05 38.39 3.68
3629 3864 6.986250 TGGTAATATGTGAACATGTTTGCAA 58.014 32.000 13.36 0.00 38.39 4.08
3630 3865 6.581171 TGGTAATATGTGAACATGTTTGCA 57.419 33.333 13.36 14.49 38.39 4.08
3631 3866 7.881643 TTTGGTAATATGTGAACATGTTTGC 57.118 32.000 13.36 9.24 38.39 3.68
3635 3870 9.474313 ACCTTATTTGGTAATATGTGAACATGT 57.526 29.630 6.19 0.00 38.79 3.21
3638 3873 9.521841 TGAACCTTATTTGGTAATATGTGAACA 57.478 29.630 0.00 0.00 39.83 3.18
3641 3876 9.913310 TGATGAACCTTATTTGGTAATATGTGA 57.087 29.630 0.00 0.00 39.83 3.58
3642 3877 9.950680 GTGATGAACCTTATTTGGTAATATGTG 57.049 33.333 0.00 0.00 39.83 3.21
3643 3878 9.693739 TGTGATGAACCTTATTTGGTAATATGT 57.306 29.630 0.00 0.00 39.83 2.29
3647 3882 9.874205 CAAATGTGATGAACCTTATTTGGTAAT 57.126 29.630 0.00 0.00 39.83 1.89
3648 3883 9.083422 TCAAATGTGATGAACCTTATTTGGTAA 57.917 29.630 0.00 0.00 39.83 2.85
3649 3884 8.642935 TCAAATGTGATGAACCTTATTTGGTA 57.357 30.769 0.00 0.00 39.83 3.25
3650 3885 7.537596 TCAAATGTGATGAACCTTATTTGGT 57.462 32.000 0.00 0.00 43.11 3.67
3651 3886 8.830201 TTTCAAATGTGATGAACCTTATTTGG 57.170 30.769 0.00 0.00 36.57 3.28
3682 3917 9.319143 TGATGAACGTTTTTCAAAACCAATAAT 57.681 25.926 0.46 0.00 44.05 1.28
3683 3918 8.703604 TGATGAACGTTTTTCAAAACCAATAA 57.296 26.923 0.46 0.00 44.05 1.40
3684 3919 8.703604 TTGATGAACGTTTTTCAAAACCAATA 57.296 26.923 18.76 1.18 44.05 1.90
3685 3920 7.602517 TTGATGAACGTTTTTCAAAACCAAT 57.397 28.000 18.76 0.00 44.05 3.16
3686 3921 7.421530 TTTGATGAACGTTTTTCAAAACCAA 57.578 28.000 25.02 11.56 44.05 3.67
3687 3922 7.421530 TTTTGATGAACGTTTTTCAAAACCA 57.578 28.000 29.21 18.36 44.05 3.67
3688 3923 8.784176 CAATTTTGATGAACGTTTTTCAAAACC 58.216 29.630 32.16 11.05 45.51 3.27
3689 3924 9.535270 TCAATTTTGATGAACGTTTTTCAAAAC 57.465 25.926 32.16 14.44 45.51 2.43
3743 3978 9.611284 CGATGAACTATTTTCAAGTTTGATGAA 57.389 29.630 0.00 0.00 37.31 2.57
3744 3979 8.998377 TCGATGAACTATTTTCAAGTTTGATGA 58.002 29.630 0.00 0.00 37.31 2.92
3745 3980 9.611284 TTCGATGAACTATTTTCAAGTTTGATG 57.389 29.630 0.00 0.00 37.31 3.07
3760 3995 9.958234 TGAATGTTTTTCAAATTCGATGAACTA 57.042 25.926 0.00 0.00 36.57 2.24
3761 3996 8.870160 TGAATGTTTTTCAAATTCGATGAACT 57.130 26.923 0.00 0.00 36.57 3.01
3762 3997 9.731519 GATGAATGTTTTTCAAATTCGATGAAC 57.268 29.630 0.00 0.00 36.57 3.18
3763 3998 8.637704 CGATGAATGTTTTTCAAATTCGATGAA 58.362 29.630 0.00 0.00 33.04 2.57
3764 3999 8.020244 TCGATGAATGTTTTTCAAATTCGATGA 58.980 29.630 7.88 0.00 34.54 2.92
3765 4000 8.160603 TCGATGAATGTTTTTCAAATTCGATG 57.839 30.769 7.88 0.00 34.54 3.84
3766 4001 8.741101 TTCGATGAATGTTTTTCAAATTCGAT 57.259 26.923 11.16 0.00 37.34 3.59
3767 4002 8.567369 TTTCGATGAATGTTTTTCAAATTCGA 57.433 26.923 7.88 7.88 36.38 3.71
3768 4003 9.796062 AATTTCGATGAATGTTTTTCAAATTCG 57.204 25.926 0.00 4.35 33.83 3.34
3811 4046 8.816144 CAAATCCGATGAACTTTTCTTGAAAAA 58.184 29.630 9.41 0.00 0.00 1.94
3812 4047 8.194104 TCAAATCCGATGAACTTTTCTTGAAAA 58.806 29.630 8.07 8.07 0.00 2.29
3813 4048 7.711846 TCAAATCCGATGAACTTTTCTTGAAA 58.288 30.769 0.00 0.00 0.00 2.69
3814 4049 7.270757 TCAAATCCGATGAACTTTTCTTGAA 57.729 32.000 0.00 0.00 0.00 2.69
3815 4050 6.875948 TCAAATCCGATGAACTTTTCTTGA 57.124 33.333 0.00 0.00 0.00 3.02
3816 4051 7.928908 TTTCAAATCCGATGAACTTTTCTTG 57.071 32.000 0.00 0.00 36.57 3.02
3817 4052 8.940768 TTTTTCAAATCCGATGAACTTTTCTT 57.059 26.923 0.00 0.00 36.57 2.52
3887 4122 9.958234 TCGATGAACTTTTGTCAAATTTGATAA 57.042 25.926 23.05 22.52 39.73 1.75
3888 4123 9.958234 TTCGATGAACTTTTGTCAAATTTGATA 57.042 25.926 23.05 18.02 39.73 2.15
3889 4124 8.870160 TTCGATGAACTTTTGTCAAATTTGAT 57.130 26.923 23.05 6.05 39.73 2.57
3890 4125 8.870160 ATTCGATGAACTTTTGTCAAATTTGA 57.130 26.923 16.91 16.91 34.20 2.69
3891 4126 9.919348 AAATTCGATGAACTTTTGTCAAATTTG 57.081 25.926 12.15 12.15 0.00 2.32
3892 4127 9.919348 CAAATTCGATGAACTTTTGTCAAATTT 57.081 25.926 0.00 0.00 0.00 1.82
3893 4128 8.550376 CCAAATTCGATGAACTTTTGTCAAATT 58.450 29.630 0.00 0.00 0.00 1.82
3894 4129 8.075593 CCAAATTCGATGAACTTTTGTCAAAT 57.924 30.769 0.00 0.00 0.00 2.32
3895 4130 7.462109 CCAAATTCGATGAACTTTTGTCAAA 57.538 32.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.