Multiple sequence alignment - TraesCS7B01G228600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G228600 chr7B 100.000 2669 0 0 1 2669 428922664 428919996 0.000000e+00 4929
1 TraesCS7B01G228600 chr7B 96.133 362 13 1 174 535 58715254 58714894 8.230000e-165 590
2 TraesCS7B01G228600 chr7B 81.707 164 14 7 3 160 550586074 550586227 3.610000e-24 122
3 TraesCS7B01G228600 chr7D 93.651 2142 86 18 539 2669 414490482 414488380 0.000000e+00 3157
4 TraesCS7B01G228600 chr7D 89.412 170 9 7 6 174 414490638 414490477 3.480000e-49 206
5 TraesCS7B01G228600 chr7A 92.225 2148 106 35 556 2668 476937001 476934880 0.000000e+00 2985
6 TraesCS7B01G228600 chr7A 85.890 163 11 7 15 174 476937338 476937185 2.130000e-36 163
7 TraesCS7B01G228600 chr2A 96.078 357 13 1 179 535 6158495 6158140 4.950000e-162 580
8 TraesCS7B01G228600 chr2A 95.810 358 14 1 178 535 6106781 6106425 6.410000e-161 577
9 TraesCS7B01G228600 chr2A 85.405 185 27 0 1462 1646 627610960 627611144 2.710000e-45 193
10 TraesCS7B01G228600 chr2A 85.621 153 22 0 1172 1324 627610493 627610645 7.650000e-36 161
11 TraesCS7B01G228600 chr2D 95.580 362 15 1 178 538 597962836 597962475 1.780000e-161 579
12 TraesCS7B01G228600 chr2D 94.751 362 18 1 178 538 641975078 641974717 1.790000e-156 562
13 TraesCS7B01G228600 chr2D 94.490 363 19 1 175 537 638451276 638451637 2.320000e-155 558
14 TraesCS7B01G228600 chr2D 84.865 185 28 0 1462 1646 483785942 483786126 1.260000e-43 187
15 TraesCS7B01G228600 chr2D 87.582 153 19 0 1172 1324 483785481 483785633 7.590000e-41 178
16 TraesCS7B01G228600 chr5B 95.225 356 16 1 180 535 563165845 563165491 1.790000e-156 562
17 TraesCS7B01G228600 chr5B 94.737 361 17 2 178 538 447568059 447567701 6.450000e-156 560
18 TraesCS7B01G228600 chr5B 82.192 146 15 6 3 146 74933691 74933827 6.040000e-22 115
19 TraesCS7B01G228600 chr1D 93.716 366 23 0 169 534 474970598 474970233 1.400000e-152 549
20 TraesCS7B01G228600 chr2B 85.185 189 27 1 1458 1646 568635419 568635606 2.710000e-45 193
21 TraesCS7B01G228600 chr2B 86.275 153 21 0 1172 1324 568634964 568635116 1.640000e-37 167
22 TraesCS7B01G228600 chr5A 81.707 164 15 7 3 160 253336282 253336128 3.610000e-24 122
23 TraesCS7B01G228600 chr6B 82.313 147 14 5 3 146 375596499 375596636 1.680000e-22 117
24 TraesCS7B01G228600 chr4B 82.313 147 14 6 3 146 127191947 127191810 1.680000e-22 117
25 TraesCS7B01G228600 chr3B 82.313 147 14 5 3 146 420410837 420410700 1.680000e-22 117
26 TraesCS7B01G228600 chr3D 81.879 149 11 11 3 146 101428578 101428715 7.810000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G228600 chr7B 428919996 428922664 2668 True 4929.0 4929 100.0000 1 2669 1 chr7B.!!$R2 2668
1 TraesCS7B01G228600 chr7D 414488380 414490638 2258 True 1681.5 3157 91.5315 6 2669 2 chr7D.!!$R1 2663
2 TraesCS7B01G228600 chr7A 476934880 476937338 2458 True 1574.0 2985 89.0575 15 2668 2 chr7A.!!$R1 2653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 432 0.108615 CCCTCCTCTGTTGTAGCACG 60.109 60.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1804 0.1023 TCGGTGATGATGGCACGTAG 59.898 55.0 0.0 0.0 37.13 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 9.888878 ATGATGCATCTAAAGTTATTGATTTCG 57.111 29.630 26.32 0.00 0.00 3.46
99 100 8.892723 TGATGCATCTAAAGTTATTGATTTCGT 58.107 29.630 26.32 0.00 0.00 3.85
178 183 9.988350 TTTGACTTGAGATAAATTTTATCGAGC 57.012 29.630 18.76 14.11 0.00 5.03
179 184 8.142994 TGACTTGAGATAAATTTTATCGAGCC 57.857 34.615 18.76 12.90 0.00 4.70
180 185 7.987458 TGACTTGAGATAAATTTTATCGAGCCT 59.013 33.333 18.76 5.78 0.00 4.58
181 186 8.147642 ACTTGAGATAAATTTTATCGAGCCTG 57.852 34.615 18.76 12.47 0.00 4.85
182 187 6.545504 TGAGATAAATTTTATCGAGCCTGC 57.454 37.500 18.76 8.11 0.00 4.85
183 188 6.291377 TGAGATAAATTTTATCGAGCCTGCT 58.709 36.000 18.76 0.00 0.00 4.24
185 190 7.600375 TGAGATAAATTTTATCGAGCCTGCTAG 59.400 37.037 18.76 0.00 0.00 3.42
188 193 8.677148 ATAAATTTTATCGAGCCTGCTAGAAA 57.323 30.769 6.05 0.00 31.86 2.52
189 194 7.573968 AAATTTTATCGAGCCTGCTAGAAAT 57.426 32.000 6.05 0.00 31.86 2.17
190 195 6.793492 ATTTTATCGAGCCTGCTAGAAATC 57.207 37.500 6.05 0.00 31.86 2.17
191 196 4.937201 TTATCGAGCCTGCTAGAAATCA 57.063 40.909 6.05 0.00 31.86 2.57
194 304 2.099921 TCGAGCCTGCTAGAAATCAGTC 59.900 50.000 0.00 0.00 0.00 3.51
225 335 9.355215 GAGATTTAACGAAGTCTCAATCAACTA 57.645 33.333 5.59 0.00 45.00 2.24
226 336 9.877178 AGATTTAACGAAGTCTCAATCAACTAT 57.123 29.630 0.00 0.00 45.00 2.12
228 338 5.786401 AACGAAGTCTCAATCAACTATGC 57.214 39.130 0.00 0.00 45.00 3.14
230 340 5.237815 ACGAAGTCTCAATCAACTATGCAA 58.762 37.500 0.00 0.00 29.74 4.08
231 341 5.120830 ACGAAGTCTCAATCAACTATGCAAC 59.879 40.000 0.00 0.00 29.74 4.17
232 342 5.120674 CGAAGTCTCAATCAACTATGCAACA 59.879 40.000 0.00 0.00 0.00 3.33
235 345 7.458409 AGTCTCAATCAACTATGCAACATTT 57.542 32.000 0.00 0.00 0.00 2.32
236 346 7.889469 AGTCTCAATCAACTATGCAACATTTT 58.111 30.769 0.00 0.00 0.00 1.82
237 347 8.362639 AGTCTCAATCAACTATGCAACATTTTT 58.637 29.630 0.00 0.00 0.00 1.94
258 368 6.910536 TTTTTGACCGTATGCAACATTTTT 57.089 29.167 0.00 0.00 0.00 1.94
280 390 7.432350 TTTTTATACCGGTTGTAACATTCGT 57.568 32.000 15.04 0.00 31.94 3.85
281 391 7.432350 TTTTATACCGGTTGTAACATTCGTT 57.568 32.000 15.04 0.00 39.24 3.85
282 392 7.432350 TTTATACCGGTTGTAACATTCGTTT 57.568 32.000 15.04 0.00 36.52 3.60
283 393 5.945466 ATACCGGTTGTAACATTCGTTTT 57.055 34.783 15.04 0.00 36.52 2.43
284 394 3.954999 ACCGGTTGTAACATTCGTTTTG 58.045 40.909 0.00 0.00 36.52 2.44
285 395 3.377798 ACCGGTTGTAACATTCGTTTTGT 59.622 39.130 0.00 0.00 36.52 2.83
286 396 4.142425 ACCGGTTGTAACATTCGTTTTGTT 60.142 37.500 0.00 5.88 40.30 2.83
287 397 4.205385 CCGGTTGTAACATTCGTTTTGTTG 59.795 41.667 0.00 0.00 37.81 3.33
288 398 4.205385 CGGTTGTAACATTCGTTTTGTTGG 59.795 41.667 9.53 0.00 37.81 3.77
289 399 5.103687 GGTTGTAACATTCGTTTTGTTGGT 58.896 37.500 9.53 0.00 37.81 3.67
290 400 5.577554 GGTTGTAACATTCGTTTTGTTGGTT 59.422 36.000 9.53 0.00 37.81 3.67
291 401 6.454450 GGTTGTAACATTCGTTTTGTTGGTTG 60.454 38.462 9.53 0.00 37.81 3.77
292 402 5.950883 TGTAACATTCGTTTTGTTGGTTGA 58.049 33.333 9.53 0.00 37.81 3.18
293 403 6.387465 TGTAACATTCGTTTTGTTGGTTGAA 58.613 32.000 9.53 0.00 37.81 2.69
294 404 6.528423 TGTAACATTCGTTTTGTTGGTTGAAG 59.472 34.615 9.53 0.00 37.81 3.02
295 405 3.862845 ACATTCGTTTTGTTGGTTGAAGC 59.137 39.130 0.00 0.00 0.00 3.86
296 406 3.577649 TTCGTTTTGTTGGTTGAAGCA 57.422 38.095 0.00 0.00 0.00 3.91
297 407 3.791973 TCGTTTTGTTGGTTGAAGCAT 57.208 38.095 0.00 0.00 0.00 3.79
298 408 3.443037 TCGTTTTGTTGGTTGAAGCATG 58.557 40.909 0.00 0.00 0.00 4.06
299 409 3.119316 TCGTTTTGTTGGTTGAAGCATGT 60.119 39.130 0.00 0.00 0.00 3.21
300 410 3.242712 CGTTTTGTTGGTTGAAGCATGTC 59.757 43.478 0.00 0.00 0.00 3.06
301 411 4.180057 GTTTTGTTGGTTGAAGCATGTCA 58.820 39.130 0.00 0.00 0.00 3.58
302 412 4.669206 TTTGTTGGTTGAAGCATGTCAT 57.331 36.364 0.00 0.00 0.00 3.06
303 413 3.921119 TGTTGGTTGAAGCATGTCATC 57.079 42.857 0.00 0.00 0.00 2.92
304 414 2.557924 TGTTGGTTGAAGCATGTCATCC 59.442 45.455 0.00 6.51 37.73 3.51
305 415 1.838112 TGGTTGAAGCATGTCATCCC 58.162 50.000 9.71 4.23 36.80 3.85
306 416 1.355381 TGGTTGAAGCATGTCATCCCT 59.645 47.619 9.71 0.00 36.80 4.20
307 417 2.019984 GGTTGAAGCATGTCATCCCTC 58.980 52.381 0.00 0.00 33.08 4.30
308 418 2.019984 GTTGAAGCATGTCATCCCTCC 58.980 52.381 0.00 0.00 0.00 4.30
309 419 1.588239 TGAAGCATGTCATCCCTCCT 58.412 50.000 0.00 0.00 0.00 3.69
310 420 1.487976 TGAAGCATGTCATCCCTCCTC 59.512 52.381 0.00 0.00 0.00 3.71
311 421 1.767681 GAAGCATGTCATCCCTCCTCT 59.232 52.381 0.00 0.00 0.00 3.69
312 422 1.129917 AGCATGTCATCCCTCCTCTG 58.870 55.000 0.00 0.00 0.00 3.35
313 423 0.835941 GCATGTCATCCCTCCTCTGT 59.164 55.000 0.00 0.00 0.00 3.41
314 424 1.211457 GCATGTCATCCCTCCTCTGTT 59.789 52.381 0.00 0.00 0.00 3.16
315 425 2.915349 CATGTCATCCCTCCTCTGTTG 58.085 52.381 0.00 0.00 0.00 3.33
316 426 2.030027 TGTCATCCCTCCTCTGTTGT 57.970 50.000 0.00 0.00 0.00 3.32
317 427 3.184382 TGTCATCCCTCCTCTGTTGTA 57.816 47.619 0.00 0.00 0.00 2.41
318 428 3.099905 TGTCATCCCTCCTCTGTTGTAG 58.900 50.000 0.00 0.00 0.00 2.74
319 429 2.111384 TCATCCCTCCTCTGTTGTAGC 58.889 52.381 0.00 0.00 0.00 3.58
320 430 1.833630 CATCCCTCCTCTGTTGTAGCA 59.166 52.381 0.00 0.00 0.00 3.49
321 431 1.267121 TCCCTCCTCTGTTGTAGCAC 58.733 55.000 0.00 0.00 0.00 4.40
322 432 0.108615 CCCTCCTCTGTTGTAGCACG 60.109 60.000 0.00 0.00 0.00 5.34
323 433 0.603569 CCTCCTCTGTTGTAGCACGT 59.396 55.000 0.00 0.00 0.00 4.49
324 434 1.402984 CCTCCTCTGTTGTAGCACGTC 60.403 57.143 0.00 0.00 0.00 4.34
325 435 1.269723 CTCCTCTGTTGTAGCACGTCA 59.730 52.381 0.00 0.00 0.00 4.35
326 436 1.893137 TCCTCTGTTGTAGCACGTCAT 59.107 47.619 0.00 0.00 0.00 3.06
327 437 2.094700 TCCTCTGTTGTAGCACGTCATC 60.095 50.000 0.00 0.00 0.00 2.92
328 438 2.094494 CCTCTGTTGTAGCACGTCATCT 60.094 50.000 0.00 0.00 0.00 2.90
329 439 3.175152 CTCTGTTGTAGCACGTCATCTC 58.825 50.000 0.00 0.00 0.00 2.75
330 440 2.556622 TCTGTTGTAGCACGTCATCTCA 59.443 45.455 0.00 0.00 0.00 3.27
331 441 3.193479 TCTGTTGTAGCACGTCATCTCAT 59.807 43.478 0.00 0.00 0.00 2.90
332 442 3.511699 TGTTGTAGCACGTCATCTCATC 58.488 45.455 0.00 0.00 0.00 2.92
333 443 2.475200 TGTAGCACGTCATCTCATCG 57.525 50.000 0.00 0.00 0.00 3.84
334 444 1.065551 TGTAGCACGTCATCTCATCGG 59.934 52.381 0.00 0.00 0.00 4.18
335 445 1.065701 GTAGCACGTCATCTCATCGGT 59.934 52.381 0.00 0.00 0.00 4.69
336 446 0.532573 AGCACGTCATCTCATCGGTT 59.467 50.000 0.00 0.00 0.00 4.44
337 447 0.647410 GCACGTCATCTCATCGGTTG 59.353 55.000 0.00 0.00 0.00 3.77
338 448 0.647410 CACGTCATCTCATCGGTTGC 59.353 55.000 0.00 0.00 0.00 4.17
339 449 0.246360 ACGTCATCTCATCGGTTGCA 59.754 50.000 0.00 0.00 0.00 4.08
340 450 1.337728 ACGTCATCTCATCGGTTGCAA 60.338 47.619 0.00 0.00 0.00 4.08
341 451 1.061131 CGTCATCTCATCGGTTGCAAC 59.939 52.381 21.59 21.59 0.00 4.17
342 452 2.076100 GTCATCTCATCGGTTGCAACA 58.924 47.619 29.55 11.98 0.00 3.33
343 453 2.679837 GTCATCTCATCGGTTGCAACAT 59.320 45.455 29.55 13.82 0.00 2.71
344 454 3.127548 GTCATCTCATCGGTTGCAACATT 59.872 43.478 29.55 11.68 0.00 2.71
345 455 3.374988 TCATCTCATCGGTTGCAACATTC 59.625 43.478 29.55 12.59 0.00 2.67
346 456 3.057969 TCTCATCGGTTGCAACATTCT 57.942 42.857 29.55 9.37 0.00 2.40
347 457 3.411446 TCTCATCGGTTGCAACATTCTT 58.589 40.909 29.55 7.80 0.00 2.52
348 458 3.436704 TCTCATCGGTTGCAACATTCTTC 59.563 43.478 29.55 11.15 0.00 2.87
349 459 3.145286 TCATCGGTTGCAACATTCTTCA 58.855 40.909 29.55 5.45 0.00 3.02
350 460 3.758023 TCATCGGTTGCAACATTCTTCAT 59.242 39.130 29.55 8.29 0.00 2.57
351 461 4.218200 TCATCGGTTGCAACATTCTTCATT 59.782 37.500 29.55 2.33 0.00 2.57
352 462 3.899734 TCGGTTGCAACATTCTTCATTG 58.100 40.909 29.55 7.01 0.00 2.82
353 463 3.567585 TCGGTTGCAACATTCTTCATTGA 59.432 39.130 29.55 8.99 0.00 2.57
354 464 3.670055 CGGTTGCAACATTCTTCATTGAC 59.330 43.478 29.55 7.63 0.00 3.18
355 465 3.670055 GGTTGCAACATTCTTCATTGACG 59.330 43.478 29.55 0.00 0.00 4.35
356 466 3.557577 TGCAACATTCTTCATTGACGG 57.442 42.857 0.00 0.00 0.00 4.79
357 467 2.884012 TGCAACATTCTTCATTGACGGT 59.116 40.909 0.00 0.00 0.00 4.83
358 468 3.317711 TGCAACATTCTTCATTGACGGTT 59.682 39.130 0.00 0.00 0.00 4.44
359 469 3.670055 GCAACATTCTTCATTGACGGTTG 59.330 43.478 0.00 0.00 35.31 3.77
360 470 4.792704 GCAACATTCTTCATTGACGGTTGT 60.793 41.667 0.00 4.08 34.98 3.32
361 471 5.561919 GCAACATTCTTCATTGACGGTTGTA 60.562 40.000 0.00 0.00 34.98 2.41
362 472 5.862924 ACATTCTTCATTGACGGTTGTAG 57.137 39.130 0.00 0.00 0.00 2.74
363 473 4.154195 ACATTCTTCATTGACGGTTGTAGC 59.846 41.667 0.00 0.00 0.00 3.58
364 474 3.394674 TCTTCATTGACGGTTGTAGCA 57.605 42.857 0.00 0.00 0.00 3.49
365 475 3.937814 TCTTCATTGACGGTTGTAGCAT 58.062 40.909 0.00 0.00 0.00 3.79
366 476 4.323417 TCTTCATTGACGGTTGTAGCATT 58.677 39.130 0.00 0.00 0.00 3.56
367 477 4.759693 TCTTCATTGACGGTTGTAGCATTT 59.240 37.500 0.00 0.00 0.00 2.32
368 478 5.240623 TCTTCATTGACGGTTGTAGCATTTT 59.759 36.000 0.00 0.00 0.00 1.82
369 479 6.428465 TCTTCATTGACGGTTGTAGCATTTTA 59.572 34.615 0.00 0.00 0.00 1.52
370 480 6.176975 TCATTGACGGTTGTAGCATTTTAG 57.823 37.500 0.00 0.00 0.00 1.85
371 481 5.703592 TCATTGACGGTTGTAGCATTTTAGT 59.296 36.000 0.00 0.00 0.00 2.24
372 482 6.205853 TCATTGACGGTTGTAGCATTTTAGTT 59.794 34.615 0.00 0.00 0.00 2.24
373 483 7.388224 TCATTGACGGTTGTAGCATTTTAGTTA 59.612 33.333 0.00 0.00 0.00 2.24
374 484 6.715344 TGACGGTTGTAGCATTTTAGTTAG 57.285 37.500 0.00 0.00 0.00 2.34
375 485 6.457355 TGACGGTTGTAGCATTTTAGTTAGA 58.543 36.000 0.00 0.00 0.00 2.10
376 486 6.930164 TGACGGTTGTAGCATTTTAGTTAGAA 59.070 34.615 0.00 0.00 0.00 2.10
377 487 7.095523 TGACGGTTGTAGCATTTTAGTTAGAAC 60.096 37.037 0.00 0.00 30.96 3.01
378 488 6.128742 ACGGTTGTAGCATTTTAGTTAGAACG 60.129 38.462 0.00 0.00 31.99 3.95
379 489 6.540205 GGTTGTAGCATTTTAGTTAGAACGG 58.460 40.000 0.00 0.00 31.99 4.44
380 490 6.148315 GGTTGTAGCATTTTAGTTAGAACGGT 59.852 38.462 0.00 0.00 31.99 4.83
381 491 7.308169 GGTTGTAGCATTTTAGTTAGAACGGTT 60.308 37.037 0.00 0.00 31.99 4.44
382 492 8.711457 GTTGTAGCATTTTAGTTAGAACGGTTA 58.289 33.333 0.00 0.00 0.00 2.85
383 493 9.439500 TTGTAGCATTTTAGTTAGAACGGTTAT 57.561 29.630 0.00 0.00 0.00 1.89
386 496 8.139521 AGCATTTTAGTTAGAACGGTTATAGC 57.860 34.615 1.71 1.71 0.00 2.97
387 497 7.767198 AGCATTTTAGTTAGAACGGTTATAGCA 59.233 33.333 11.10 0.00 0.00 3.49
388 498 8.557029 GCATTTTAGTTAGAACGGTTATAGCAT 58.443 33.333 11.10 1.12 0.00 3.79
392 502 9.439500 TTTAGTTAGAACGGTTATAGCATTTGT 57.561 29.630 11.10 0.00 0.00 2.83
393 503 7.916914 AGTTAGAACGGTTATAGCATTTGTT 57.083 32.000 11.10 0.00 0.00 2.83
394 504 7.748847 AGTTAGAACGGTTATAGCATTTGTTG 58.251 34.615 11.10 0.00 0.00 3.33
395 505 7.389607 AGTTAGAACGGTTATAGCATTTGTTGT 59.610 33.333 11.10 0.00 0.00 3.32
396 506 6.569179 AGAACGGTTATAGCATTTGTTGTT 57.431 33.333 0.00 0.00 0.00 2.83
397 507 6.378582 AGAACGGTTATAGCATTTGTTGTTG 58.621 36.000 0.00 0.00 0.00 3.33
398 508 5.699097 ACGGTTATAGCATTTGTTGTTGT 57.301 34.783 0.00 0.00 0.00 3.32
399 509 6.079424 ACGGTTATAGCATTTGTTGTTGTT 57.921 33.333 0.00 0.00 0.00 2.83
400 510 5.918011 ACGGTTATAGCATTTGTTGTTGTTG 59.082 36.000 0.00 0.00 0.00 3.33
401 511 5.164100 CGGTTATAGCATTTGTTGTTGTTGC 60.164 40.000 0.00 0.00 0.00 4.17
402 512 5.925969 GGTTATAGCATTTGTTGTTGTTGCT 59.074 36.000 1.08 1.08 45.10 3.91
403 513 6.423604 GGTTATAGCATTTGTTGTTGTTGCTT 59.576 34.615 0.65 0.00 43.08 3.91
404 514 5.910637 ATAGCATTTGTTGTTGTTGCTTG 57.089 34.783 0.65 0.00 43.08 4.01
405 515 2.352342 AGCATTTGTTGTTGTTGCTTGC 59.648 40.909 0.00 0.00 40.58 4.01
406 516 2.095532 GCATTTGTTGTTGTTGCTTGCA 59.904 40.909 0.00 0.00 0.00 4.08
407 517 3.425892 GCATTTGTTGTTGTTGCTTGCAA 60.426 39.130 3.70 3.70 0.00 4.08
408 518 4.731193 GCATTTGTTGTTGTTGCTTGCAAT 60.731 37.500 11.32 0.00 0.00 3.56
409 519 5.503683 GCATTTGTTGTTGTTGCTTGCAATA 60.504 36.000 11.32 6.00 0.00 1.90
410 520 5.462034 TTTGTTGTTGTTGCTTGCAATAC 57.538 34.783 11.32 12.39 0.00 1.89
411 521 3.452474 TGTTGTTGTTGCTTGCAATACC 58.548 40.909 11.32 2.16 0.00 2.73
412 522 3.118992 TGTTGTTGTTGCTTGCAATACCA 60.119 39.130 11.32 4.85 0.00 3.25
413 523 4.057432 GTTGTTGTTGCTTGCAATACCAT 58.943 39.130 11.32 0.00 0.00 3.55
414 524 3.911868 TGTTGTTGCTTGCAATACCATC 58.088 40.909 11.32 5.26 0.00 3.51
415 525 2.916716 GTTGTTGCTTGCAATACCATCG 59.083 45.455 11.32 0.00 0.00 3.84
416 526 1.135431 TGTTGCTTGCAATACCATCGC 60.135 47.619 11.32 0.00 0.00 4.58
417 527 1.135431 GTTGCTTGCAATACCATCGCA 60.135 47.619 11.32 0.63 0.00 5.10
418 528 1.172175 TGCTTGCAATACCATCGCAA 58.828 45.000 0.00 0.00 43.02 4.85
419 529 1.135431 TGCTTGCAATACCATCGCAAC 60.135 47.619 0.00 0.00 40.54 4.17
420 530 1.135431 GCTTGCAATACCATCGCAACA 60.135 47.619 0.00 0.00 40.54 3.33
421 531 2.480073 GCTTGCAATACCATCGCAACAT 60.480 45.455 0.00 0.00 40.54 2.71
422 532 3.772932 CTTGCAATACCATCGCAACATT 58.227 40.909 0.00 0.00 40.54 2.71
423 533 3.865011 TGCAATACCATCGCAACATTT 57.135 38.095 0.00 0.00 31.46 2.32
424 534 4.185467 TGCAATACCATCGCAACATTTT 57.815 36.364 0.00 0.00 31.46 1.82
425 535 4.564041 TGCAATACCATCGCAACATTTTT 58.436 34.783 0.00 0.00 31.46 1.94
426 536 4.624882 TGCAATACCATCGCAACATTTTTC 59.375 37.500 0.00 0.00 31.46 2.29
427 537 4.259371 GCAATACCATCGCAACATTTTTCG 60.259 41.667 0.00 0.00 0.00 3.46
428 538 4.695217 ATACCATCGCAACATTTTTCGT 57.305 36.364 0.00 0.00 0.00 3.85
429 539 2.928694 ACCATCGCAACATTTTTCGTC 58.071 42.857 0.00 0.00 0.00 4.20
430 540 1.904412 CCATCGCAACATTTTTCGTCG 59.096 47.619 0.00 0.00 0.00 5.12
431 541 1.314412 CATCGCAACATTTTTCGTCGC 59.686 47.619 0.00 0.00 0.00 5.19
432 542 0.384974 TCGCAACATTTTTCGTCGCC 60.385 50.000 0.00 0.00 0.00 5.54
433 543 1.652148 CGCAACATTTTTCGTCGCCG 61.652 55.000 0.00 0.00 0.00 6.46
434 544 0.659123 GCAACATTTTTCGTCGCCGT 60.659 50.000 0.00 0.00 35.01 5.68
435 545 1.749153 CAACATTTTTCGTCGCCGTT 58.251 45.000 0.00 0.00 35.01 4.44
436 546 2.113289 CAACATTTTTCGTCGCCGTTT 58.887 42.857 0.00 0.00 35.01 3.60
437 547 1.749153 ACATTTTTCGTCGCCGTTTG 58.251 45.000 0.00 0.00 35.01 2.93
438 548 1.064357 ACATTTTTCGTCGCCGTTTGT 59.936 42.857 0.00 0.00 35.01 2.83
439 549 2.287373 ACATTTTTCGTCGCCGTTTGTA 59.713 40.909 0.00 0.00 35.01 2.41
440 550 2.649140 TTTTTCGTCGCCGTTTGTAG 57.351 45.000 0.00 0.00 35.01 2.74
441 551 0.232816 TTTTCGTCGCCGTTTGTAGC 59.767 50.000 0.00 0.00 35.01 3.58
442 552 0.875040 TTTCGTCGCCGTTTGTAGCA 60.875 50.000 0.00 0.00 35.01 3.49
443 553 0.668096 TTCGTCGCCGTTTGTAGCAT 60.668 50.000 0.00 0.00 35.01 3.79
444 554 1.074319 TCGTCGCCGTTTGTAGCATC 61.074 55.000 0.00 0.00 35.01 3.91
445 555 1.076533 CGTCGCCGTTTGTAGCATCT 61.077 55.000 0.00 0.00 0.00 2.90
446 556 1.796253 CGTCGCCGTTTGTAGCATCTA 60.796 52.381 0.00 0.00 0.00 1.98
447 557 1.852895 GTCGCCGTTTGTAGCATCTAG 59.147 52.381 0.00 0.00 0.00 2.43
448 558 0.577269 CGCCGTTTGTAGCATCTAGC 59.423 55.000 0.00 0.00 46.19 3.42
457 567 4.899239 GCATCTAGCCGTGCCGCT 62.899 66.667 3.96 0.00 43.09 5.52
458 568 2.202932 CATCTAGCCGTGCCGCTT 60.203 61.111 0.00 0.00 40.39 4.68
459 569 2.202932 ATCTAGCCGTGCCGCTTG 60.203 61.111 0.00 0.00 40.39 4.01
460 570 3.019003 ATCTAGCCGTGCCGCTTGT 62.019 57.895 0.00 0.00 40.39 3.16
461 571 1.672854 ATCTAGCCGTGCCGCTTGTA 61.673 55.000 0.00 0.00 40.39 2.41
462 572 1.878522 CTAGCCGTGCCGCTTGTAG 60.879 63.158 0.00 0.00 40.39 2.74
465 575 3.047280 CCGTGCCGCTTGTAGCAA 61.047 61.111 0.00 0.00 42.58 3.91
466 576 2.612567 CCGTGCCGCTTGTAGCAAA 61.613 57.895 0.00 0.00 42.58 3.68
467 577 1.281353 CGTGCCGCTTGTAGCAAAA 59.719 52.632 0.00 0.00 42.58 2.44
468 578 0.317436 CGTGCCGCTTGTAGCAAAAA 60.317 50.000 0.00 0.00 42.58 1.94
491 601 2.556792 CGCTGACGTCACTCGACT 59.443 61.111 23.39 0.00 42.86 4.18
492 602 1.785951 CGCTGACGTCACTCGACTA 59.214 57.895 23.39 0.00 42.86 2.59
493 603 0.165295 CGCTGACGTCACTCGACTAA 59.835 55.000 23.39 0.00 42.86 2.24
494 604 1.787281 CGCTGACGTCACTCGACTAAG 60.787 57.143 23.39 9.77 42.86 2.18
495 605 1.463831 GCTGACGTCACTCGACTAAGA 59.536 52.381 15.76 0.00 42.86 2.10
496 606 2.725452 GCTGACGTCACTCGACTAAGAC 60.725 54.545 15.76 0.00 42.86 3.01
497 607 2.737783 CTGACGTCACTCGACTAAGACT 59.262 50.000 15.76 0.00 42.86 3.24
498 608 3.136763 TGACGTCACTCGACTAAGACTT 58.863 45.455 15.76 0.00 42.86 3.01
499 609 3.186001 TGACGTCACTCGACTAAGACTTC 59.814 47.826 15.76 0.00 42.86 3.01
500 610 2.157279 ACGTCACTCGACTAAGACTTCG 59.843 50.000 0.00 0.00 42.86 3.79
501 611 2.157279 CGTCACTCGACTAAGACTTCGT 59.843 50.000 0.00 0.00 42.86 3.85
502 612 3.363772 CGTCACTCGACTAAGACTTCGTT 60.364 47.826 0.00 0.00 42.86 3.85
503 613 4.143242 CGTCACTCGACTAAGACTTCGTTA 60.143 45.833 0.00 0.00 42.86 3.18
504 614 5.613360 CGTCACTCGACTAAGACTTCGTTAA 60.613 44.000 0.00 0.00 42.86 2.01
505 615 5.789512 GTCACTCGACTAAGACTTCGTTAAG 59.210 44.000 0.00 0.00 39.22 1.85
506 616 6.565623 GTCACTCGACTAAGACTTCGTTAAGT 60.566 42.308 0.00 0.00 42.70 2.24
516 626 4.144534 ACTTCGTTAAGTCTCAGTCGAC 57.855 45.455 7.70 7.70 42.42 4.20
517 627 3.814283 ACTTCGTTAAGTCTCAGTCGACT 59.186 43.478 13.58 13.58 42.42 4.18
518 628 3.808116 TCGTTAAGTCTCAGTCGACTG 57.192 47.619 34.76 34.76 43.14 3.51
519 629 6.481358 ACTTCGTTAAGTCTCAGTCGACTGA 61.481 44.000 38.24 38.24 45.13 3.41
531 641 5.547181 CAGTCGACTGAGTTATAGACACA 57.453 43.478 36.73 0.00 46.59 3.72
532 642 5.325494 CAGTCGACTGAGTTATAGACACAC 58.675 45.833 36.73 0.00 46.59 3.82
533 643 4.395542 AGTCGACTGAGTTATAGACACACC 59.604 45.833 19.30 0.00 0.00 4.16
534 644 3.693085 TCGACTGAGTTATAGACACACCC 59.307 47.826 0.00 0.00 0.00 4.61
535 645 3.442625 CGACTGAGTTATAGACACACCCA 59.557 47.826 0.00 0.00 0.00 4.51
536 646 4.082408 CGACTGAGTTATAGACACACCCAA 60.082 45.833 0.00 0.00 0.00 4.12
537 647 5.566032 CGACTGAGTTATAGACACACCCAAA 60.566 44.000 0.00 0.00 0.00 3.28
538 648 6.374417 ACTGAGTTATAGACACACCCAAAT 57.626 37.500 0.00 0.00 0.00 2.32
539 649 6.779860 ACTGAGTTATAGACACACCCAAATT 58.220 36.000 0.00 0.00 0.00 1.82
540 650 7.231467 ACTGAGTTATAGACACACCCAAATTT 58.769 34.615 0.00 0.00 0.00 1.82
541 651 7.724061 ACTGAGTTATAGACACACCCAAATTTT 59.276 33.333 0.00 0.00 0.00 1.82
542 652 9.226606 CTGAGTTATAGACACACCCAAATTTTA 57.773 33.333 0.00 0.00 0.00 1.52
543 653 9.747898 TGAGTTATAGACACACCCAAATTTTAT 57.252 29.630 0.00 0.00 0.00 1.40
546 656 9.925268 GTTATAGACACACCCAAATTTTATACG 57.075 33.333 0.00 0.00 0.00 3.06
547 657 5.305139 AGACACACCCAAATTTTATACGC 57.695 39.130 0.00 0.00 0.00 4.42
548 658 5.007682 AGACACACCCAAATTTTATACGCT 58.992 37.500 0.00 0.00 0.00 5.07
549 659 5.054390 ACACACCCAAATTTTATACGCTG 57.946 39.130 0.00 0.00 0.00 5.18
550 660 4.762765 ACACACCCAAATTTTATACGCTGA 59.237 37.500 0.00 0.00 0.00 4.26
551 661 5.241949 ACACACCCAAATTTTATACGCTGAA 59.758 36.000 0.00 0.00 0.00 3.02
566 676 1.471676 GCTGAACGGAGGGAGTACATG 60.472 57.143 0.00 0.00 0.00 3.21
572 682 0.811616 GGAGGGAGTACATGCTTGCG 60.812 60.000 0.00 0.00 0.00 4.85
605 715 4.142160 ACCTTGTTTGAACTTTTGCCTCTC 60.142 41.667 0.00 0.00 0.00 3.20
607 717 4.900635 TGTTTGAACTTTTGCCTCTCTC 57.099 40.909 0.00 0.00 0.00 3.20
609 719 5.680619 TGTTTGAACTTTTGCCTCTCTCTA 58.319 37.500 0.00 0.00 0.00 2.43
612 722 7.285401 TGTTTGAACTTTTGCCTCTCTCTATTT 59.715 33.333 0.00 0.00 0.00 1.40
613 723 8.784043 GTTTGAACTTTTGCCTCTCTCTATTTA 58.216 33.333 0.00 0.00 0.00 1.40
653 765 9.587772 AAATATGTGTGAGAATATCTATACGCC 57.412 33.333 0.00 0.00 0.00 5.68
656 768 6.004574 TGTGTGAGAATATCTATACGCCTCT 58.995 40.000 0.00 0.00 0.00 3.69
657 769 6.490381 TGTGTGAGAATATCTATACGCCTCTT 59.510 38.462 0.00 0.00 0.00 2.85
658 770 7.014326 TGTGTGAGAATATCTATACGCCTCTTT 59.986 37.037 0.00 0.00 0.00 2.52
659 771 7.868415 GTGTGAGAATATCTATACGCCTCTTTT 59.132 37.037 0.00 0.00 0.00 2.27
693 805 4.131088 GCTCCCGGTCGTGTCCTC 62.131 72.222 0.00 0.00 0.00 3.71
742 859 3.694734 CAGAGCAGTTCGAAAAGCAAAA 58.305 40.909 20.84 0.00 0.00 2.44
751 868 3.380142 TCGAAAAGCAAAATCCAGCAAC 58.620 40.909 0.00 0.00 0.00 4.17
792 910 3.480505 ACCCAACCACACTAACTACAC 57.519 47.619 0.00 0.00 0.00 2.90
823 941 4.322567 ACTTCTTCACCATCAAGCTCTTC 58.677 43.478 0.00 0.00 0.00 2.87
824 942 2.964740 TCTTCACCATCAAGCTCTTCG 58.035 47.619 0.00 0.00 0.00 3.79
923 1041 1.935873 GCATGATCTCTACGCAGCAAA 59.064 47.619 0.00 0.00 0.00 3.68
991 1115 2.960659 CAGAGCAGCTCGCCATCG 60.961 66.667 16.99 0.00 44.04 3.84
992 1116 3.456365 AGAGCAGCTCGCCATCGT 61.456 61.111 16.99 0.00 44.04 3.73
1023 1147 3.560251 AGCACCAACGAGGCCACT 61.560 61.111 5.01 0.00 43.14 4.00
1048 1172 1.070615 CACATGGACGACACCACCA 59.929 57.895 0.00 0.00 43.03 4.17
1064 1188 4.195334 CAGCAAGGCCCCGGCTAT 62.195 66.667 12.49 0.00 37.50 2.97
1090 1214 4.680237 CACCGTCAGGAGCCGCAA 62.680 66.667 0.00 0.00 41.02 4.85
1395 1525 2.797278 CCCCTTCTCCATCGTCGGG 61.797 68.421 0.00 0.00 0.00 5.14
1470 1600 1.675641 GATGGTGGTGCTGGTGACC 60.676 63.158 0.00 0.00 0.00 4.02
1674 1804 1.521681 CAGGCAACGCTAGGCTACC 60.522 63.158 0.00 0.00 40.22 3.18
1675 1805 1.686110 AGGCAACGCTAGGCTACCT 60.686 57.895 0.00 0.00 46.39 3.08
1676 1806 0.396695 AGGCAACGCTAGGCTACCTA 60.397 55.000 0.00 0.00 46.39 3.08
1677 1807 0.249363 GGCAACGCTAGGCTACCTAC 60.249 60.000 0.00 0.00 34.61 3.18
1678 1808 0.594284 GCAACGCTAGGCTACCTACG 60.594 60.000 11.50 11.50 37.00 3.51
1679 1809 0.737219 CAACGCTAGGCTACCTACGT 59.263 55.000 12.42 12.42 41.61 3.57
1680 1810 0.737219 AACGCTAGGCTACCTACGTG 59.263 55.000 16.43 10.18 40.24 4.49
1681 1811 1.008767 CGCTAGGCTACCTACGTGC 60.009 63.158 0.00 0.00 34.61 5.34
1682 1812 1.363080 GCTAGGCTACCTACGTGCC 59.637 63.158 5.74 5.74 46.42 5.01
1713 1846 4.005032 GAGGTCGCTCGATGCTTC 57.995 61.111 0.00 0.00 40.11 3.86
1725 1858 1.532868 CGATGCTTCCGAATCCATTCC 59.467 52.381 0.00 0.00 33.28 3.01
1763 1896 8.567948 TGCTTTCTCTACTTTACTTTGATTTGG 58.432 33.333 0.00 0.00 0.00 3.28
1785 1918 2.353579 TCATGCTCATGAGTGAATTGCG 59.646 45.455 23.38 4.94 42.42 4.85
1790 1927 1.402613 TCATGAGTGAATTGCGCCATG 59.597 47.619 4.18 8.83 37.19 3.66
1800 1937 4.821260 TGAATTGCGCCATGTCATATACTT 59.179 37.500 4.18 0.00 0.00 2.24
1801 1938 5.994668 TGAATTGCGCCATGTCATATACTTA 59.005 36.000 4.18 0.00 0.00 2.24
1802 1939 5.862924 ATTGCGCCATGTCATATACTTAC 57.137 39.130 4.18 0.00 0.00 2.34
1803 1940 4.600692 TGCGCCATGTCATATACTTACT 57.399 40.909 4.18 0.00 0.00 2.24
1805 1942 3.927142 GCGCCATGTCATATACTTACTCC 59.073 47.826 0.00 0.00 0.00 3.85
1807 1944 5.164233 CGCCATGTCATATACTTACTCCTG 58.836 45.833 0.00 0.00 0.00 3.86
1809 1946 5.928839 GCCATGTCATATACTTACTCCTGTG 59.071 44.000 0.00 0.00 0.00 3.66
1810 1947 6.463049 GCCATGTCATATACTTACTCCTGTGT 60.463 42.308 0.00 0.00 0.00 3.72
1811 1948 7.500992 CCATGTCATATACTTACTCCTGTGTT 58.499 38.462 0.00 0.00 0.00 3.32
1812 1949 7.653713 CCATGTCATATACTTACTCCTGTGTTC 59.346 40.741 0.00 0.00 0.00 3.18
1813 1950 7.956328 TGTCATATACTTACTCCTGTGTTCT 57.044 36.000 0.00 0.00 0.00 3.01
1814 1951 8.362464 TGTCATATACTTACTCCTGTGTTCTT 57.638 34.615 0.00 0.00 0.00 2.52
1815 1952 8.812972 TGTCATATACTTACTCCTGTGTTCTTT 58.187 33.333 0.00 0.00 0.00 2.52
1816 1953 9.303537 GTCATATACTTACTCCTGTGTTCTTTC 57.696 37.037 0.00 0.00 0.00 2.62
1817 1954 9.256228 TCATATACTTACTCCTGTGTTCTTTCT 57.744 33.333 0.00 0.00 0.00 2.52
1818 1955 9.522804 CATATACTTACTCCTGTGTTCTTTCTC 57.477 37.037 0.00 0.00 0.00 2.87
1819 1956 7.784470 ATACTTACTCCTGTGTTCTTTCTCT 57.216 36.000 0.00 0.00 0.00 3.10
1889 2026 9.607988 TGGAATGTAACTATGTAAGTGTATTGG 57.392 33.333 0.00 0.00 38.88 3.16
1922 2061 2.919666 ACATTTTCGATTTCCAGCGG 57.080 45.000 0.00 0.00 0.00 5.52
2077 2218 2.535574 GCTGGCAGAACAAACGAAAAAG 59.464 45.455 20.86 0.00 0.00 2.27
2078 2219 3.733684 GCTGGCAGAACAAACGAAAAAGA 60.734 43.478 20.86 0.00 0.00 2.52
2079 2220 4.420168 CTGGCAGAACAAACGAAAAAGAA 58.580 39.130 9.42 0.00 0.00 2.52
2080 2221 4.810790 TGGCAGAACAAACGAAAAAGAAA 58.189 34.783 0.00 0.00 0.00 2.52
2081 2222 4.862018 TGGCAGAACAAACGAAAAAGAAAG 59.138 37.500 0.00 0.00 0.00 2.62
2082 2223 5.099575 GGCAGAACAAACGAAAAAGAAAGA 58.900 37.500 0.00 0.00 0.00 2.52
2083 2224 5.575218 GGCAGAACAAACGAAAAAGAAAGAA 59.425 36.000 0.00 0.00 0.00 2.52
2084 2225 6.090223 GGCAGAACAAACGAAAAAGAAAGAAA 59.910 34.615 0.00 0.00 0.00 2.52
2085 2226 7.166824 GCAGAACAAACGAAAAAGAAAGAAAG 58.833 34.615 0.00 0.00 0.00 2.62
2141 2289 6.377245 TGGATGAATGATGATGGCAGTATA 57.623 37.500 0.00 0.00 0.00 1.47
2390 2546 3.708734 GCGTTGAACACCCCGTCG 61.709 66.667 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 179 2.468831 GACTGATTTCTAGCAGGCTCG 58.531 52.381 0.00 0.00 42.67 5.03
175 180 2.099921 TCGACTGATTTCTAGCAGGCTC 59.900 50.000 0.00 0.00 43.81 4.70
176 181 2.103373 TCGACTGATTTCTAGCAGGCT 58.897 47.619 0.00 0.00 43.81 4.58
177 182 2.159170 AGTCGACTGATTTCTAGCAGGC 60.159 50.000 19.30 0.00 42.53 4.85
178 183 3.443037 CAGTCGACTGATTTCTAGCAGG 58.557 50.000 36.73 7.99 46.59 4.85
190 195 5.154932 ACTTCGTTAAATCTCAGTCGACTG 58.845 41.667 34.76 34.76 45.08 3.51
191 196 5.181622 AGACTTCGTTAAATCTCAGTCGACT 59.818 40.000 13.58 13.58 36.56 4.18
194 304 5.391449 TGAGACTTCGTTAAATCTCAGTCG 58.609 41.667 0.00 0.00 41.99 4.18
203 313 7.386573 TGCATAGTTGATTGAGACTTCGTTAAA 59.613 33.333 0.00 0.00 0.00 1.52
204 314 6.871492 TGCATAGTTGATTGAGACTTCGTTAA 59.129 34.615 0.00 0.00 0.00 2.01
209 319 6.486253 TGTTGCATAGTTGATTGAGACTTC 57.514 37.500 0.00 0.00 0.00 3.01
235 345 6.910536 AAAAATGTTGCATACGGTCAAAAA 57.089 29.167 0.00 0.00 0.00 1.94
256 366 7.432350 ACGAATGTTACAACCGGTATAAAAA 57.568 32.000 8.00 2.75 0.00 1.94
257 367 7.432350 AACGAATGTTACAACCGGTATAAAA 57.568 32.000 8.00 5.63 36.28 1.52
258 368 7.432350 AAACGAATGTTACAACCGGTATAAA 57.568 32.000 8.00 0.00 37.31 1.40
259 369 7.041508 ACAAAACGAATGTTACAACCGGTATAA 60.042 33.333 8.00 7.39 37.31 0.98
260 370 6.426328 ACAAAACGAATGTTACAACCGGTATA 59.574 34.615 8.00 0.00 37.31 1.47
261 371 5.239087 ACAAAACGAATGTTACAACCGGTAT 59.761 36.000 8.00 0.95 37.31 2.73
262 372 4.574013 ACAAAACGAATGTTACAACCGGTA 59.426 37.500 8.00 0.00 37.31 4.02
263 373 3.377798 ACAAAACGAATGTTACAACCGGT 59.622 39.130 0.00 0.00 37.31 5.28
264 374 3.954999 ACAAAACGAATGTTACAACCGG 58.045 40.909 0.00 0.00 37.31 5.28
265 375 4.205385 CCAACAAAACGAATGTTACAACCG 59.795 41.667 7.88 7.88 38.90 4.44
266 376 5.103687 ACCAACAAAACGAATGTTACAACC 58.896 37.500 0.00 0.00 38.90 3.77
267 377 6.308282 TCAACCAACAAAACGAATGTTACAAC 59.692 34.615 0.00 0.00 38.90 3.32
268 378 6.387465 TCAACCAACAAAACGAATGTTACAA 58.613 32.000 0.00 0.00 38.90 2.41
269 379 5.950883 TCAACCAACAAAACGAATGTTACA 58.049 33.333 0.00 0.00 38.90 2.41
270 380 6.507299 GCTTCAACCAACAAAACGAATGTTAC 60.507 38.462 0.00 0.00 38.90 2.50
271 381 5.517054 GCTTCAACCAACAAAACGAATGTTA 59.483 36.000 0.00 0.00 38.90 2.41
272 382 4.328712 GCTTCAACCAACAAAACGAATGTT 59.671 37.500 0.00 0.00 41.50 2.71
273 383 3.862845 GCTTCAACCAACAAAACGAATGT 59.137 39.130 0.00 0.00 0.00 2.71
274 384 3.862267 TGCTTCAACCAACAAAACGAATG 59.138 39.130 0.00 0.00 0.00 2.67
275 385 4.116747 TGCTTCAACCAACAAAACGAAT 57.883 36.364 0.00 0.00 0.00 3.34
276 386 3.577649 TGCTTCAACCAACAAAACGAA 57.422 38.095 0.00 0.00 0.00 3.85
277 387 3.119316 ACATGCTTCAACCAACAAAACGA 60.119 39.130 0.00 0.00 0.00 3.85
278 388 3.186119 ACATGCTTCAACCAACAAAACG 58.814 40.909 0.00 0.00 0.00 3.60
279 389 4.180057 TGACATGCTTCAACCAACAAAAC 58.820 39.130 0.00 0.00 0.00 2.43
280 390 4.462508 TGACATGCTTCAACCAACAAAA 57.537 36.364 0.00 0.00 0.00 2.44
281 391 4.501229 GGATGACATGCTTCAACCAACAAA 60.501 41.667 7.50 0.00 38.14 2.83
282 392 3.005684 GGATGACATGCTTCAACCAACAA 59.994 43.478 7.50 0.00 38.14 2.83
283 393 2.557924 GGATGACATGCTTCAACCAACA 59.442 45.455 7.50 0.00 38.14 3.33
284 394 2.094545 GGGATGACATGCTTCAACCAAC 60.095 50.000 12.73 0.00 39.62 3.77
285 395 2.170166 GGGATGACATGCTTCAACCAA 58.830 47.619 12.73 0.00 39.62 3.67
286 396 1.355381 AGGGATGACATGCTTCAACCA 59.645 47.619 12.73 0.00 39.62 3.67
287 397 2.019984 GAGGGATGACATGCTTCAACC 58.980 52.381 13.21 4.54 37.65 3.77
288 398 2.019984 GGAGGGATGACATGCTTCAAC 58.980 52.381 18.53 1.36 0.00 3.18
289 399 1.918262 AGGAGGGATGACATGCTTCAA 59.082 47.619 18.53 0.00 0.00 2.69
290 400 1.487976 GAGGAGGGATGACATGCTTCA 59.512 52.381 18.53 0.00 0.00 3.02
291 401 1.767681 AGAGGAGGGATGACATGCTTC 59.232 52.381 10.16 10.16 0.00 3.86
292 402 1.489649 CAGAGGAGGGATGACATGCTT 59.510 52.381 6.91 0.00 0.00 3.91
293 403 1.129917 CAGAGGAGGGATGACATGCT 58.870 55.000 6.91 0.00 0.00 3.79
294 404 0.835941 ACAGAGGAGGGATGACATGC 59.164 55.000 0.00 0.00 0.00 4.06
295 405 2.238144 ACAACAGAGGAGGGATGACATG 59.762 50.000 0.00 0.00 0.00 3.21
296 406 2.555664 ACAACAGAGGAGGGATGACAT 58.444 47.619 0.00 0.00 0.00 3.06
297 407 2.030027 ACAACAGAGGAGGGATGACA 57.970 50.000 0.00 0.00 0.00 3.58
298 408 2.159028 GCTACAACAGAGGAGGGATGAC 60.159 54.545 0.00 0.00 0.00 3.06
299 409 2.111384 GCTACAACAGAGGAGGGATGA 58.889 52.381 0.00 0.00 0.00 2.92
300 410 1.833630 TGCTACAACAGAGGAGGGATG 59.166 52.381 0.00 0.00 0.00 3.51
301 411 1.834263 GTGCTACAACAGAGGAGGGAT 59.166 52.381 0.00 0.00 0.00 3.85
302 412 1.267121 GTGCTACAACAGAGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
303 413 0.108615 CGTGCTACAACAGAGGAGGG 60.109 60.000 0.00 0.00 0.00 4.30
304 414 0.603569 ACGTGCTACAACAGAGGAGG 59.396 55.000 0.00 0.00 0.00 4.30
305 415 1.269723 TGACGTGCTACAACAGAGGAG 59.730 52.381 0.00 0.00 0.00 3.69
306 416 1.324383 TGACGTGCTACAACAGAGGA 58.676 50.000 0.00 0.00 0.00 3.71
307 417 2.094494 AGATGACGTGCTACAACAGAGG 60.094 50.000 0.00 0.00 0.00 3.69
308 418 3.175152 GAGATGACGTGCTACAACAGAG 58.825 50.000 0.00 0.00 0.00 3.35
309 419 2.556622 TGAGATGACGTGCTACAACAGA 59.443 45.455 0.00 0.00 0.00 3.41
310 420 2.946564 TGAGATGACGTGCTACAACAG 58.053 47.619 0.00 0.00 0.00 3.16
311 421 3.511699 GATGAGATGACGTGCTACAACA 58.488 45.455 0.00 0.00 0.00 3.33
312 422 2.531912 CGATGAGATGACGTGCTACAAC 59.468 50.000 0.00 0.00 0.00 3.32
313 423 2.479560 CCGATGAGATGACGTGCTACAA 60.480 50.000 0.00 0.00 0.00 2.41
314 424 1.065551 CCGATGAGATGACGTGCTACA 59.934 52.381 0.00 0.00 0.00 2.74
315 425 1.065701 ACCGATGAGATGACGTGCTAC 59.934 52.381 0.00 0.00 0.00 3.58
316 426 1.389555 ACCGATGAGATGACGTGCTA 58.610 50.000 0.00 0.00 0.00 3.49
317 427 0.532573 AACCGATGAGATGACGTGCT 59.467 50.000 0.00 0.00 0.00 4.40
318 428 0.647410 CAACCGATGAGATGACGTGC 59.353 55.000 0.00 0.00 0.00 5.34
319 429 0.647410 GCAACCGATGAGATGACGTG 59.353 55.000 0.00 0.00 0.00 4.49
320 430 0.246360 TGCAACCGATGAGATGACGT 59.754 50.000 0.00 0.00 0.00 4.34
321 431 1.061131 GTTGCAACCGATGAGATGACG 59.939 52.381 19.15 0.00 0.00 4.35
322 432 2.076100 TGTTGCAACCGATGAGATGAC 58.924 47.619 26.14 0.00 0.00 3.06
323 433 2.470983 TGTTGCAACCGATGAGATGA 57.529 45.000 26.14 0.76 0.00 2.92
324 434 3.376234 AGAATGTTGCAACCGATGAGATG 59.624 43.478 26.14 0.00 0.00 2.90
325 435 3.614092 AGAATGTTGCAACCGATGAGAT 58.386 40.909 26.14 8.71 0.00 2.75
326 436 3.057969 AGAATGTTGCAACCGATGAGA 57.942 42.857 26.14 6.55 0.00 3.27
327 437 3.189080 TGAAGAATGTTGCAACCGATGAG 59.811 43.478 26.14 0.00 0.00 2.90
328 438 3.145286 TGAAGAATGTTGCAACCGATGA 58.855 40.909 26.14 8.09 0.00 2.92
329 439 3.557577 TGAAGAATGTTGCAACCGATG 57.442 42.857 26.14 0.00 0.00 3.84
330 440 4.218200 TCAATGAAGAATGTTGCAACCGAT 59.782 37.500 26.14 11.68 0.00 4.18
331 441 3.567585 TCAATGAAGAATGTTGCAACCGA 59.432 39.130 26.14 9.67 0.00 4.69
332 442 3.670055 GTCAATGAAGAATGTTGCAACCG 59.330 43.478 26.14 2.87 0.00 4.44
333 443 3.670055 CGTCAATGAAGAATGTTGCAACC 59.330 43.478 26.14 11.44 0.00 3.77
334 444 3.670055 CCGTCAATGAAGAATGTTGCAAC 59.330 43.478 22.83 22.83 0.00 4.17
335 445 3.317711 ACCGTCAATGAAGAATGTTGCAA 59.682 39.130 0.00 0.00 0.00 4.08
336 446 2.884012 ACCGTCAATGAAGAATGTTGCA 59.116 40.909 0.00 0.00 0.00 4.08
337 447 3.559238 ACCGTCAATGAAGAATGTTGC 57.441 42.857 0.00 0.00 0.00 4.17
338 448 4.858935 ACAACCGTCAATGAAGAATGTTG 58.141 39.130 12.30 12.30 37.33 3.33
339 449 5.334879 GCTACAACCGTCAATGAAGAATGTT 60.335 40.000 10.56 0.00 0.00 2.71
340 450 4.154195 GCTACAACCGTCAATGAAGAATGT 59.846 41.667 0.00 5.14 0.00 2.71
341 451 4.154015 TGCTACAACCGTCAATGAAGAATG 59.846 41.667 0.00 0.00 0.00 2.67
342 452 4.323417 TGCTACAACCGTCAATGAAGAAT 58.677 39.130 0.00 0.00 0.00 2.40
343 453 3.734463 TGCTACAACCGTCAATGAAGAA 58.266 40.909 0.00 0.00 0.00 2.52
344 454 3.394674 TGCTACAACCGTCAATGAAGA 57.605 42.857 0.00 0.00 0.00 2.87
345 455 4.685169 AATGCTACAACCGTCAATGAAG 57.315 40.909 0.00 0.00 0.00 3.02
346 456 5.446143 AAAATGCTACAACCGTCAATGAA 57.554 34.783 0.00 0.00 0.00 2.57
347 457 5.703592 ACTAAAATGCTACAACCGTCAATGA 59.296 36.000 0.00 0.00 0.00 2.57
348 458 5.938322 ACTAAAATGCTACAACCGTCAATG 58.062 37.500 0.00 0.00 0.00 2.82
349 459 6.569179 AACTAAAATGCTACAACCGTCAAT 57.431 33.333 0.00 0.00 0.00 2.57
350 460 6.930164 TCTAACTAAAATGCTACAACCGTCAA 59.070 34.615 0.00 0.00 0.00 3.18
351 461 6.457355 TCTAACTAAAATGCTACAACCGTCA 58.543 36.000 0.00 0.00 0.00 4.35
352 462 6.956299 TCTAACTAAAATGCTACAACCGTC 57.044 37.500 0.00 0.00 0.00 4.79
353 463 6.128742 CGTTCTAACTAAAATGCTACAACCGT 60.129 38.462 0.00 0.00 0.00 4.83
354 464 6.238508 CGTTCTAACTAAAATGCTACAACCG 58.761 40.000 0.00 0.00 0.00 4.44
355 465 6.148315 ACCGTTCTAACTAAAATGCTACAACC 59.852 38.462 0.00 0.00 0.00 3.77
356 466 7.125536 ACCGTTCTAACTAAAATGCTACAAC 57.874 36.000 0.00 0.00 0.00 3.32
357 467 7.733402 AACCGTTCTAACTAAAATGCTACAA 57.267 32.000 0.00 0.00 0.00 2.41
360 470 9.252962 GCTATAACCGTTCTAACTAAAATGCTA 57.747 33.333 0.00 0.00 0.00 3.49
361 471 7.767198 TGCTATAACCGTTCTAACTAAAATGCT 59.233 33.333 0.00 0.00 0.00 3.79
362 472 7.912383 TGCTATAACCGTTCTAACTAAAATGC 58.088 34.615 0.00 0.00 0.00 3.56
366 476 9.439500 ACAAATGCTATAACCGTTCTAACTAAA 57.561 29.630 0.00 0.00 0.00 1.85
367 477 9.439500 AACAAATGCTATAACCGTTCTAACTAA 57.561 29.630 0.00 0.00 0.00 2.24
368 478 8.875803 CAACAAATGCTATAACCGTTCTAACTA 58.124 33.333 0.00 0.00 0.00 2.24
369 479 7.389607 ACAACAAATGCTATAACCGTTCTAACT 59.610 33.333 0.00 0.00 0.00 2.24
370 480 7.524065 ACAACAAATGCTATAACCGTTCTAAC 58.476 34.615 0.00 0.00 0.00 2.34
371 481 7.675962 ACAACAAATGCTATAACCGTTCTAA 57.324 32.000 0.00 0.00 0.00 2.10
372 482 7.173562 ACAACAACAAATGCTATAACCGTTCTA 59.826 33.333 0.00 0.00 0.00 2.10
373 483 6.016610 ACAACAACAAATGCTATAACCGTTCT 60.017 34.615 0.00 0.00 0.00 3.01
374 484 6.146898 ACAACAACAAATGCTATAACCGTTC 58.853 36.000 0.00 0.00 0.00 3.95
375 485 6.079424 ACAACAACAAATGCTATAACCGTT 57.921 33.333 0.00 0.00 0.00 4.44
376 486 5.699097 ACAACAACAAATGCTATAACCGT 57.301 34.783 0.00 0.00 0.00 4.83
377 487 5.164100 GCAACAACAACAAATGCTATAACCG 60.164 40.000 0.00 0.00 34.29 4.44
378 488 5.925969 AGCAACAACAACAAATGCTATAACC 59.074 36.000 0.00 0.00 44.92 2.85
379 489 7.282916 CAAGCAACAACAACAAATGCTATAAC 58.717 34.615 0.00 0.00 45.95 1.89
380 490 6.073873 GCAAGCAACAACAACAAATGCTATAA 60.074 34.615 0.00 0.00 45.95 0.98
381 491 5.404968 GCAAGCAACAACAACAAATGCTATA 59.595 36.000 0.00 0.00 45.95 1.31
382 492 4.211794 GCAAGCAACAACAACAAATGCTAT 59.788 37.500 0.00 0.00 45.95 2.97
383 493 3.555139 GCAAGCAACAACAACAAATGCTA 59.445 39.130 0.00 0.00 45.95 3.49
385 495 2.095532 TGCAAGCAACAACAACAAATGC 59.904 40.909 0.00 0.00 37.28 3.56
386 496 4.337985 TTGCAAGCAACAACAACAAATG 57.662 36.364 2.89 0.00 0.00 2.32
387 497 5.007528 GGTATTGCAAGCAACAACAACAAAT 59.992 36.000 9.97 0.00 38.88 2.32
388 498 4.331168 GGTATTGCAAGCAACAACAACAAA 59.669 37.500 9.97 0.00 38.88 2.83
389 499 3.868077 GGTATTGCAAGCAACAACAACAA 59.132 39.130 9.97 0.00 38.88 2.83
390 500 3.118992 TGGTATTGCAAGCAACAACAACA 60.119 39.130 9.97 2.29 38.88 3.33
391 501 3.452474 TGGTATTGCAAGCAACAACAAC 58.548 40.909 9.97 4.03 38.88 3.32
392 502 3.808466 TGGTATTGCAAGCAACAACAA 57.192 38.095 9.97 2.58 38.88 2.83
393 503 3.611293 CGATGGTATTGCAAGCAACAACA 60.611 43.478 6.24 6.24 34.37 3.33
394 504 2.916716 CGATGGTATTGCAAGCAACAAC 59.083 45.455 9.97 10.95 38.88 3.32
395 505 2.670789 GCGATGGTATTGCAAGCAACAA 60.671 45.455 9.97 0.00 38.88 2.83
396 506 1.135431 GCGATGGTATTGCAAGCAACA 60.135 47.619 9.97 4.52 38.88 3.33
397 507 1.135431 TGCGATGGTATTGCAAGCAAC 60.135 47.619 9.97 3.01 46.24 4.17
398 508 1.172175 TGCGATGGTATTGCAAGCAA 58.828 45.000 10.19 10.19 46.24 3.91
399 509 2.865492 TGCGATGGTATTGCAAGCA 58.135 47.368 4.94 4.06 46.24 3.91
404 514 4.259371 CGAAAAATGTTGCGATGGTATTGC 60.259 41.667 0.00 0.00 38.11 3.56
405 515 4.856487 ACGAAAAATGTTGCGATGGTATTG 59.144 37.500 2.04 0.00 38.11 1.90
406 516 5.054390 ACGAAAAATGTTGCGATGGTATT 57.946 34.783 2.04 0.00 38.11 1.89
407 517 4.658071 GACGAAAAATGTTGCGATGGTAT 58.342 39.130 2.04 0.00 38.11 2.73
408 518 3.423776 CGACGAAAAATGTTGCGATGGTA 60.424 43.478 2.04 0.00 38.11 3.25
409 519 2.664424 CGACGAAAAATGTTGCGATGGT 60.664 45.455 2.04 0.00 38.11 3.55
410 520 1.904412 CGACGAAAAATGTTGCGATGG 59.096 47.619 2.04 0.00 38.11 3.51
411 521 1.314412 GCGACGAAAAATGTTGCGATG 59.686 47.619 2.04 0.00 38.11 3.84
412 522 1.602191 GCGACGAAAAATGTTGCGAT 58.398 45.000 2.04 0.00 38.11 4.58
413 523 0.384974 GGCGACGAAAAATGTTGCGA 60.385 50.000 2.04 0.00 45.75 5.10
414 524 2.050849 GGCGACGAAAAATGTTGCG 58.949 52.632 0.00 0.00 45.75 4.85
427 537 1.852895 CTAGATGCTACAAACGGCGAC 59.147 52.381 16.62 0.00 0.00 5.19
428 538 1.801395 GCTAGATGCTACAAACGGCGA 60.801 52.381 16.62 0.00 38.95 5.54
429 539 0.577269 GCTAGATGCTACAAACGGCG 59.423 55.000 4.80 4.80 38.95 6.46
430 540 0.938008 GGCTAGATGCTACAAACGGC 59.062 55.000 0.00 0.00 42.39 5.68
431 541 1.209128 CGGCTAGATGCTACAAACGG 58.791 55.000 0.00 0.00 42.39 4.44
432 542 1.588404 CACGGCTAGATGCTACAAACG 59.412 52.381 0.00 0.00 42.39 3.60
433 543 1.327764 GCACGGCTAGATGCTACAAAC 59.672 52.381 0.00 0.00 42.39 2.93
434 544 1.651987 GCACGGCTAGATGCTACAAA 58.348 50.000 0.00 0.00 42.39 2.83
435 545 0.179084 GGCACGGCTAGATGCTACAA 60.179 55.000 12.18 0.00 41.74 2.41
436 546 1.441729 GGCACGGCTAGATGCTACA 59.558 57.895 12.18 0.00 41.74 2.74
437 547 4.345337 GGCACGGCTAGATGCTAC 57.655 61.111 12.18 0.00 41.74 3.58
450 560 3.560826 TTTTTGCTACAAGCGGCAC 57.439 47.368 1.45 0.00 46.26 5.01
478 588 6.125473 ACGAAGTCTTAGTCGAGTGACGTC 62.125 50.000 9.11 9.11 45.00 4.34
479 589 4.350007 ACGAAGTCTTAGTCGAGTGACGT 61.350 47.826 2.10 0.83 45.00 4.34
480 590 2.157279 ACGAAGTCTTAGTCGAGTGACG 59.843 50.000 2.10 0.00 45.00 4.35
481 591 3.809918 ACGAAGTCTTAGTCGAGTGAC 57.190 47.619 2.10 2.73 41.19 3.67
482 592 5.468072 ACTTAACGAAGTCTTAGTCGAGTGA 59.532 40.000 2.10 0.00 45.00 3.41
483 593 5.687828 ACTTAACGAAGTCTTAGTCGAGTG 58.312 41.667 2.10 0.00 45.00 3.51
484 594 5.938438 ACTTAACGAAGTCTTAGTCGAGT 57.062 39.130 0.00 0.00 45.00 4.18
509 619 5.325494 GTGTGTCTATAACTCAGTCGACTG 58.675 45.833 34.76 34.76 45.08 3.51
510 620 4.395542 GGTGTGTCTATAACTCAGTCGACT 59.604 45.833 13.58 13.58 32.30 4.18
511 621 4.438472 GGGTGTGTCTATAACTCAGTCGAC 60.438 50.000 7.70 7.70 32.30 4.20
512 622 3.693085 GGGTGTGTCTATAACTCAGTCGA 59.307 47.826 0.00 0.00 32.30 4.20
513 623 3.442625 TGGGTGTGTCTATAACTCAGTCG 59.557 47.826 0.00 0.00 32.30 4.18
514 624 5.401531 TTGGGTGTGTCTATAACTCAGTC 57.598 43.478 0.00 0.00 32.30 3.51
515 625 5.818678 TTTGGGTGTGTCTATAACTCAGT 57.181 39.130 0.00 0.00 32.30 3.41
516 626 7.687941 AAATTTGGGTGTGTCTATAACTCAG 57.312 36.000 0.00 0.00 32.30 3.35
517 627 9.747898 ATAAAATTTGGGTGTGTCTATAACTCA 57.252 29.630 0.00 0.00 0.00 3.41
520 630 9.925268 CGTATAAAATTTGGGTGTGTCTATAAC 57.075 33.333 0.00 0.00 0.00 1.89
521 631 8.614346 GCGTATAAAATTTGGGTGTGTCTATAA 58.386 33.333 0.00 0.00 0.00 0.98
522 632 7.988599 AGCGTATAAAATTTGGGTGTGTCTATA 59.011 33.333 0.00 0.00 0.00 1.31
523 633 6.826741 AGCGTATAAAATTTGGGTGTGTCTAT 59.173 34.615 0.00 0.00 0.00 1.98
524 634 6.092944 CAGCGTATAAAATTTGGGTGTGTCTA 59.907 38.462 0.00 0.00 0.00 2.59
525 635 5.007682 AGCGTATAAAATTTGGGTGTGTCT 58.992 37.500 0.00 0.00 0.00 3.41
526 636 5.092781 CAGCGTATAAAATTTGGGTGTGTC 58.907 41.667 0.00 0.00 0.00 3.67
527 637 4.762765 TCAGCGTATAAAATTTGGGTGTGT 59.237 37.500 0.00 0.00 0.00 3.72
528 638 5.303747 TCAGCGTATAAAATTTGGGTGTG 57.696 39.130 0.00 0.00 0.00 3.82
529 639 5.618195 CGTTCAGCGTATAAAATTTGGGTGT 60.618 40.000 0.00 0.00 35.54 4.16
530 640 4.791163 CGTTCAGCGTATAAAATTTGGGTG 59.209 41.667 0.00 0.00 35.54 4.61
531 641 4.142556 CCGTTCAGCGTATAAAATTTGGGT 60.143 41.667 0.00 0.00 39.32 4.51
532 642 4.095185 TCCGTTCAGCGTATAAAATTTGGG 59.905 41.667 0.00 0.00 39.32 4.12
533 643 5.224562 TCCGTTCAGCGTATAAAATTTGG 57.775 39.130 0.00 0.00 39.32 3.28
534 644 5.263185 CCTCCGTTCAGCGTATAAAATTTG 58.737 41.667 0.00 0.00 39.32 2.32
535 645 4.334481 CCCTCCGTTCAGCGTATAAAATTT 59.666 41.667 0.00 0.00 39.32 1.82
536 646 3.875134 CCCTCCGTTCAGCGTATAAAATT 59.125 43.478 0.00 0.00 39.32 1.82
537 647 3.133362 TCCCTCCGTTCAGCGTATAAAAT 59.867 43.478 0.00 0.00 39.32 1.82
538 648 2.496871 TCCCTCCGTTCAGCGTATAAAA 59.503 45.455 0.00 0.00 39.32 1.52
539 649 2.100252 CTCCCTCCGTTCAGCGTATAAA 59.900 50.000 0.00 0.00 39.32 1.40
540 650 1.679680 CTCCCTCCGTTCAGCGTATAA 59.320 52.381 0.00 0.00 39.32 0.98
541 651 1.315690 CTCCCTCCGTTCAGCGTATA 58.684 55.000 0.00 0.00 39.32 1.47
542 652 0.683504 ACTCCCTCCGTTCAGCGTAT 60.684 55.000 0.00 0.00 39.32 3.06
543 653 0.035152 TACTCCCTCCGTTCAGCGTA 60.035 55.000 0.00 0.00 39.32 4.42
544 654 1.303888 TACTCCCTCCGTTCAGCGT 60.304 57.895 0.00 0.00 39.32 5.07
545 655 1.139095 GTACTCCCTCCGTTCAGCG 59.861 63.158 0.00 0.00 40.95 5.18
546 656 0.824759 ATGTACTCCCTCCGTTCAGC 59.175 55.000 0.00 0.00 0.00 4.26
547 657 1.471676 GCATGTACTCCCTCCGTTCAG 60.472 57.143 0.00 0.00 0.00 3.02
548 658 0.535335 GCATGTACTCCCTCCGTTCA 59.465 55.000 0.00 0.00 0.00 3.18
549 659 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
550 660 1.066143 CAAGCATGTACTCCCTCCGTT 60.066 52.381 0.00 0.00 0.00 4.44
551 661 0.537188 CAAGCATGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
572 682 0.037975 CAAACAAGGTGGCTGGCATC 60.038 55.000 7.33 6.81 0.00 3.91
632 744 6.004574 AGAGGCGTATAGATATTCTCACACA 58.995 40.000 0.00 0.00 0.00 3.72
666 778 2.342279 CCGGGAGCAGTTCAACGA 59.658 61.111 0.00 0.00 31.77 3.85
667 779 2.027625 GACCGGGAGCAGTTCAACG 61.028 63.158 6.32 0.00 0.00 4.10
693 805 2.638556 CGATGCCGGAATAGGAGTAG 57.361 55.000 5.05 0.00 0.00 2.57
731 843 2.476241 GGTTGCTGGATTTTGCTTTTCG 59.524 45.455 0.00 0.00 0.00 3.46
742 859 1.075374 TGGTTGCTTAGGTTGCTGGAT 59.925 47.619 0.00 0.00 0.00 3.41
751 868 0.036732 TGCAGGAGTGGTTGCTTAGG 59.963 55.000 0.00 0.00 40.87 2.69
792 910 1.699634 TGGTGAAGAAGTTGAGAGGGG 59.300 52.381 0.00 0.00 0.00 4.79
823 941 6.148480 GGAATAGTTGGAGGAATGATTGATCG 59.852 42.308 0.00 0.00 0.00 3.69
824 942 7.000472 TGGAATAGTTGGAGGAATGATTGATC 59.000 38.462 0.00 0.00 0.00 2.92
908 1026 3.866651 AGATTGTTTGCTGCGTAGAGAT 58.133 40.909 4.08 0.00 0.00 2.75
923 1041 5.427806 TCTGGGAGATTGAGATGAAGATTGT 59.572 40.000 0.00 0.00 0.00 2.71
984 1108 0.809636 TCATGTTGGCTACGATGGCG 60.810 55.000 0.00 0.00 44.79 5.69
991 1115 0.449388 GTGCTGCTCATGTTGGCTAC 59.551 55.000 0.00 0.00 0.00 3.58
992 1116 0.677731 GGTGCTGCTCATGTTGGCTA 60.678 55.000 0.00 0.00 0.00 3.93
1048 1172 4.195334 CATAGCCGGGGCCTTGCT 62.195 66.667 20.92 20.92 43.17 3.91
1260 1390 1.289380 GGTGAAGACGGAGAGCGTT 59.711 57.895 0.00 0.00 0.00 4.84
1395 1525 3.436728 GCCTTTGGCCGGATGATC 58.563 61.111 5.05 0.00 44.06 2.92
1538 1668 1.466856 GAACTGCATGCAGATGGGAA 58.533 50.000 45.50 12.26 46.30 3.97
1539 1669 0.394762 GGAACTGCATGCAGATGGGA 60.395 55.000 45.50 13.04 46.30 4.37
1650 1780 1.815421 CTAGCGTTGCCTGCGGATT 60.815 57.895 0.00 0.00 37.44 3.01
1659 1789 0.594284 CGTAGGTAGCCTAGCGTTGC 60.594 60.000 0.00 0.00 36.71 4.17
1674 1804 0.102300 TCGGTGATGATGGCACGTAG 59.898 55.000 0.00 0.00 37.13 3.51
1675 1805 0.179121 GTCGGTGATGATGGCACGTA 60.179 55.000 0.00 0.00 37.13 3.57
1676 1806 1.447838 GTCGGTGATGATGGCACGT 60.448 57.895 0.00 0.00 37.13 4.49
1677 1807 2.173669 GGTCGGTGATGATGGCACG 61.174 63.158 0.00 0.00 37.13 5.34
1678 1808 2.173669 CGGTCGGTGATGATGGCAC 61.174 63.158 0.00 0.00 35.56 5.01
1679 1809 2.186644 CGGTCGGTGATGATGGCA 59.813 61.111 0.00 0.00 0.00 4.92
1680 1810 1.592669 CTCGGTCGGTGATGATGGC 60.593 63.158 0.00 0.00 0.00 4.40
1681 1811 1.068083 CCTCGGTCGGTGATGATGG 59.932 63.158 0.00 0.00 0.00 3.51
1682 1812 0.249073 GACCTCGGTCGGTGATGATG 60.249 60.000 0.00 0.00 37.42 3.07
1683 1813 2.116383 GACCTCGGTCGGTGATGAT 58.884 57.895 0.00 0.00 37.42 2.45
1684 1814 3.599584 GACCTCGGTCGGTGATGA 58.400 61.111 0.00 0.00 37.42 2.92
1713 1846 1.134521 TCAAGACCGGAATGGATTCGG 60.135 52.381 9.46 0.00 42.00 4.30
1725 1858 3.070018 AGAGAAAGCACAATCAAGACCG 58.930 45.455 0.00 0.00 0.00 4.79
1763 1896 3.692576 GCAATTCACTCATGAGCATGAC 58.307 45.455 22.83 4.56 42.42 3.06
1785 1918 5.928839 CACAGGAGTAAGTATATGACATGGC 59.071 44.000 0.00 0.00 0.00 4.40
1790 1927 9.303537 GAAAGAACACAGGAGTAAGTATATGAC 57.696 37.037 0.00 0.00 0.00 3.06
1800 1937 5.011125 CCAGAAGAGAAAGAACACAGGAGTA 59.989 44.000 0.00 0.00 0.00 2.59
1801 1938 4.202305 CCAGAAGAGAAAGAACACAGGAGT 60.202 45.833 0.00 0.00 0.00 3.85
1802 1939 4.202305 ACCAGAAGAGAAAGAACACAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
1803 1940 3.711704 ACCAGAAGAGAAAGAACACAGGA 59.288 43.478 0.00 0.00 0.00 3.86
1805 1942 4.446371 ACACCAGAAGAGAAAGAACACAG 58.554 43.478 0.00 0.00 0.00 3.66
1807 1944 5.467063 CCTTACACCAGAAGAGAAAGAACAC 59.533 44.000 0.00 0.00 0.00 3.32
1809 1946 5.467063 CACCTTACACCAGAAGAGAAAGAAC 59.533 44.000 0.00 0.00 0.00 3.01
1810 1947 5.130477 ACACCTTACACCAGAAGAGAAAGAA 59.870 40.000 0.00 0.00 0.00 2.52
1811 1948 4.654262 ACACCTTACACCAGAAGAGAAAGA 59.346 41.667 0.00 0.00 0.00 2.52
1812 1949 4.962155 ACACCTTACACCAGAAGAGAAAG 58.038 43.478 0.00 0.00 0.00 2.62
1813 1950 5.365619 GAACACCTTACACCAGAAGAGAAA 58.634 41.667 0.00 0.00 0.00 2.52
1814 1951 4.500887 CGAACACCTTACACCAGAAGAGAA 60.501 45.833 0.00 0.00 0.00 2.87
1815 1952 3.005472 CGAACACCTTACACCAGAAGAGA 59.995 47.826 0.00 0.00 0.00 3.10
1816 1953 3.243771 ACGAACACCTTACACCAGAAGAG 60.244 47.826 0.00 0.00 0.00 2.85
1817 1954 2.696707 ACGAACACCTTACACCAGAAGA 59.303 45.455 0.00 0.00 0.00 2.87
1818 1955 3.057734 GACGAACACCTTACACCAGAAG 58.942 50.000 0.00 0.00 0.00 2.85
1819 1956 2.431419 TGACGAACACCTTACACCAGAA 59.569 45.455 0.00 0.00 0.00 3.02
1922 2061 2.880890 TCTCTCTTGTTTGCTTGCTTCC 59.119 45.455 0.00 0.00 0.00 3.46
2007 2148 8.900511 AATGTTGAAATTGATCGATACACTTG 57.099 30.769 0.00 0.00 0.00 3.16
2078 2219 9.657419 TGCATTTCTTTCTTTCTTTCTTTCTTT 57.343 25.926 0.00 0.00 0.00 2.52
2079 2220 9.657419 TTGCATTTCTTTCTTTCTTTCTTTCTT 57.343 25.926 0.00 0.00 0.00 2.52
2080 2221 9.657419 TTTGCATTTCTTTCTTTCTTTCTTTCT 57.343 25.926 0.00 0.00 0.00 2.52
2081 2222 9.911980 CTTTGCATTTCTTTCTTTCTTTCTTTC 57.088 29.630 0.00 0.00 0.00 2.62
2082 2223 8.393366 GCTTTGCATTTCTTTCTTTCTTTCTTT 58.607 29.630 0.00 0.00 0.00 2.52
2083 2224 7.550196 TGCTTTGCATTTCTTTCTTTCTTTCTT 59.450 29.630 0.00 0.00 31.71 2.52
2084 2225 7.043565 TGCTTTGCATTTCTTTCTTTCTTTCT 58.956 30.769 0.00 0.00 31.71 2.52
2085 2226 7.223387 TCTGCTTTGCATTTCTTTCTTTCTTTC 59.777 33.333 0.00 0.00 38.13 2.62
2141 2289 3.498774 AACCAGAAGCAACAGTGATCT 57.501 42.857 0.00 0.00 0.00 2.75
2588 2744 1.080434 GCTGACTGTGTCGGACTCC 60.080 63.158 9.88 0.77 41.05 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.