Multiple sequence alignment - TraesCS7B01G228400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G228400 chr7B 100.000 3762 0 0 1390 5151 428839897 428836136 0.000000e+00 6948.0
1 TraesCS7B01G228400 chr7B 100.000 1098 0 0 1 1098 428841286 428840189 0.000000e+00 2028.0
2 TraesCS7B01G228400 chr7A 92.125 1181 57 15 3364 4508 476929975 476928795 0.000000e+00 1633.0
3 TraesCS7B01G228400 chr7A 96.409 919 25 4 2319 3231 476930884 476929968 0.000000e+00 1507.0
4 TraesCS7B01G228400 chr7A 93.520 787 34 10 1390 2159 476931670 476930884 0.000000e+00 1155.0
5 TraesCS7B01G228400 chr7A 92.657 286 15 5 4577 4860 476919358 476919077 1.730000e-109 407.0
6 TraesCS7B01G228400 chr7A 90.291 206 13 6 894 1097 476931987 476931787 3.960000e-66 263.0
7 TraesCS7B01G228400 chr7A 93.694 111 7 0 3510 3620 94782444 94782334 3.190000e-37 167.0
8 TraesCS7B01G228400 chr7A 94.118 68 3 1 4502 4568 476919463 476919396 9.120000e-18 102.0
9 TraesCS7B01G228400 chr7D 97.152 913 22 2 2321 3231 414374207 414373297 0.000000e+00 1539.0
10 TraesCS7B01G228400 chr7D 94.604 908 35 3 3364 4257 414373304 414372397 0.000000e+00 1393.0
11 TraesCS7B01G228400 chr7D 94.595 777 33 3 1390 2159 414374980 414374206 0.000000e+00 1194.0
12 TraesCS7B01G228400 chr7D 87.662 616 29 13 529 1097 414375706 414375091 0.000000e+00 673.0
13 TraesCS7B01G228400 chr7D 94.186 344 19 1 4577 4920 414312277 414311935 1.640000e-144 523.0
14 TraesCS7B01G228400 chr7D 97.333 300 8 0 4851 5150 414311935 414311636 1.280000e-140 510.0
15 TraesCS7B01G228400 chr7D 84.387 538 58 12 1 530 414410744 414410225 5.950000e-139 505.0
16 TraesCS7B01G228400 chr7D 85.827 381 18 4 4219 4563 414372492 414372112 6.300000e-99 372.0
17 TraesCS7B01G228400 chr7D 97.297 37 1 0 4547 4583 414312343 414312307 4.310000e-06 63.9
18 TraesCS7B01G228400 chr7D 88.636 44 3 2 4863 4905 563665358 563665316 9.000000e-03 52.8
19 TraesCS7B01G228400 chr4B 93.923 181 10 1 2147 2327 575778146 575778325 6.570000e-69 272.0
20 TraesCS7B01G228400 chr4B 92.241 116 8 1 3503 3618 255388167 255388281 4.130000e-36 163.0
21 TraesCS7B01G228400 chr2D 95.833 168 7 0 2157 2324 194458616 194458783 6.570000e-69 272.0
22 TraesCS7B01G228400 chr2D 91.912 136 9 2 3233 3368 122581126 122580993 6.810000e-44 189.0
23 TraesCS7B01G228400 chr6D 94.737 171 8 1 2158 2327 392278577 392278747 1.100000e-66 265.0
24 TraesCS7B01G228400 chr6D 91.200 125 9 2 3502 3625 90111142 90111265 8.870000e-38 169.0
25 TraesCS7B01G228400 chr6D 92.982 114 8 0 3511 3624 115787725 115787612 3.190000e-37 167.0
26 TraesCS7B01G228400 chr6D 92.241 116 9 0 3502 3617 302113635 302113750 1.150000e-36 165.0
27 TraesCS7B01G228400 chr6D 100.000 29 0 0 4862 4890 232367086 232367114 3.000000e-03 54.7
28 TraesCS7B01G228400 chr5D 94.706 170 9 0 2155 2324 330703136 330702967 1.100000e-66 265.0
29 TraesCS7B01G228400 chr5D 93.678 174 11 0 2155 2328 303991763 303991590 1.420000e-65 261.0
30 TraesCS7B01G228400 chr5D 91.791 134 9 2 3233 3366 138565671 138565540 8.810000e-43 185.0
31 TraesCS7B01G228400 chr5D 94.167 120 6 1 3502 3621 371860601 371860719 1.140000e-41 182.0
32 TraesCS7B01G228400 chr5D 100.000 29 0 0 4864 4892 485057865 485057893 3.000000e-03 54.7
33 TraesCS7B01G228400 chr5D 100.000 28 0 0 4863 4890 332584394 332584367 9.000000e-03 52.8
34 TraesCS7B01G228400 chr2B 95.238 168 7 1 2158 2325 769268636 769268470 1.100000e-66 265.0
35 TraesCS7B01G228400 chr2B 95.238 126 4 2 3232 3357 594838050 594838173 1.130000e-46 198.0
36 TraesCS7B01G228400 chr2B 87.692 130 13 2 3220 3348 373749335 373749462 1.160000e-31 148.0
37 TraesCS7B01G228400 chrUn 94.706 170 8 1 2158 2327 25754365 25754533 3.960000e-66 263.0
38 TraesCS7B01G228400 chrUn 100.000 29 0 0 4862 4890 295063536 295063508 3.000000e-03 54.7
39 TraesCS7B01G228400 chr5B 93.333 180 9 3 2148 2326 427931376 427931199 3.960000e-66 263.0
40 TraesCS7B01G228400 chr5B 93.182 132 8 1 3232 3363 657593221 657593351 5.260000e-45 193.0
41 TraesCS7B01G228400 chr5B 87.879 132 13 3 3220 3349 610312218 610312088 8.930000e-33 152.0
42 TraesCS7B01G228400 chr5A 91.803 183 13 2 2140 2322 395851231 395851411 2.380000e-63 254.0
43 TraesCS7B01G228400 chr5A 85.915 142 16 4 3209 3349 653056684 653056546 1.160000e-31 148.0
44 TraesCS7B01G228400 chr3A 90.385 156 11 4 3233 3386 22891706 22891553 8.750000e-48 202.0
45 TraesCS7B01G228400 chr6B 97.436 117 3 0 3233 3349 520548171 520548055 3.150000e-47 200.0
46 TraesCS7B01G228400 chr6B 90.769 130 10 2 3220 3349 684977934 684978061 6.860000e-39 172.0
47 TraesCS7B01G228400 chr3B 95.161 124 5 1 3225 3348 173375678 173375800 1.460000e-45 195.0
48 TraesCS7B01G228400 chr3B 92.481 133 7 3 3218 3348 173371459 173371590 2.450000e-43 187.0
49 TraesCS7B01G228400 chr3B 87.970 133 15 1 3217 3349 677998261 677998130 6.910000e-34 156.0
50 TraesCS7B01G228400 chr4A 92.913 127 9 0 3233 3359 187572346 187572220 8.810000e-43 185.0
51 TraesCS7B01G228400 chr4A 89.474 133 10 4 3220 3349 575399569 575399438 1.150000e-36 165.0
52 TraesCS7B01G228400 chr4A 100.000 29 0 0 4862 4890 725410426 725410398 3.000000e-03 54.7
53 TraesCS7B01G228400 chr4D 91.538 130 10 1 3219 3348 302003961 302003833 1.470000e-40 178.0
54 TraesCS7B01G228400 chr4D 93.103 116 7 1 3503 3618 259497372 259497258 8.870000e-38 169.0
55 TraesCS7B01G228400 chr2A 87.970 133 13 3 3219 3349 502328259 502328390 2.480000e-33 154.0
56 TraesCS7B01G228400 chr1D 92.857 42 3 0 4864 4905 103225919 103225878 1.550000e-05 62.1
57 TraesCS7B01G228400 chr1B 100.000 29 0 0 4862 4890 48794196 48794224 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G228400 chr7B 428836136 428841286 5150 True 4488.000000 6948 100.00000 1 5151 2 chr7B.!!$R1 5150
1 TraesCS7B01G228400 chr7A 476928795 476931987 3192 True 1139.500000 1633 93.08625 894 4508 4 chr7A.!!$R3 3614
2 TraesCS7B01G228400 chr7D 414372112 414375706 3594 True 1034.200000 1539 91.96800 529 4563 5 chr7D.!!$R4 4034
3 TraesCS7B01G228400 chr7D 414410225 414410744 519 True 505.000000 505 84.38700 1 530 1 chr7D.!!$R1 529
4 TraesCS7B01G228400 chr7D 414311636 414312343 707 True 365.633333 523 96.27200 4547 5150 3 chr7D.!!$R3 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 201 0.106149 AGAAGGTCACCACCAACGAC 59.894 55.0 0.00 0.0 46.68 4.34 F
194 202 0.179067 GAAGGTCACCACCAACGACA 60.179 55.0 0.00 0.0 46.68 4.35 F
491 500 0.249238 GCGCTCATCGAGGAATGTCT 60.249 55.0 0.00 0.0 41.67 3.41 F
2138 2211 0.035152 CCATACAGCAGCCTTCCACA 60.035 55.0 0.00 0.0 0.00 4.17 F
3252 3333 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1692 1.377536 GCAGAGAGATGCCCAACTTC 58.622 55.000 0.00 0.0 40.43 3.01 R
1708 1779 2.907892 ACTTCCTTCTCTGGGTCATCA 58.092 47.619 0.00 0.0 0.00 3.07 R
2304 2377 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.0 0.00 4.12 R
3231 3312 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.0 46.06 2.12 R
4729 4898 0.106819 ATCCAACAGCTCCAGGATGC 60.107 55.000 9.03 0.0 39.32 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.480954 CATGGCTTGTACGTAGAGGGT 59.519 52.381 4.01 0.00 0.00 4.34
45 46 4.736896 GACCCTGGTCGCCGTGTC 62.737 72.222 0.00 0.00 35.30 3.67
55 56 2.126228 GCCGTGTCGAATGTCCGA 60.126 61.111 0.00 0.00 36.06 4.55
58 59 0.388134 CCGTGTCGAATGTCCGAGTT 60.388 55.000 0.00 0.00 39.43 3.01
59 60 0.708370 CGTGTCGAATGTCCGAGTTG 59.292 55.000 0.00 0.00 39.43 3.16
83 91 1.141881 CCTCCCTTGGTCGTGATCG 59.858 63.158 0.00 0.00 38.55 3.69
109 117 4.037208 CCACTCAAGCATCCATCAATTACC 59.963 45.833 0.00 0.00 0.00 2.85
134 142 2.289320 ACACAGTTCATGGAGCAGTCTC 60.289 50.000 0.00 0.00 38.62 3.36
137 145 1.203523 AGTTCATGGAGCAGTCTCGAC 59.796 52.381 0.00 0.00 40.26 4.20
138 146 1.067565 GTTCATGGAGCAGTCTCGACA 60.068 52.381 0.00 0.00 40.26 4.35
139 147 1.256812 TCATGGAGCAGTCTCGACAA 58.743 50.000 0.00 0.00 40.26 3.18
155 163 2.096516 CGACAAAGAGTTGCTCAGCTTC 60.097 50.000 0.00 0.00 38.39 3.86
183 191 1.967319 TTGTCAAGGCAGAAGGTCAC 58.033 50.000 0.00 0.00 0.00 3.67
193 201 0.106149 AGAAGGTCACCACCAACGAC 59.894 55.000 0.00 0.00 46.68 4.34
194 202 0.179067 GAAGGTCACCACCAACGACA 60.179 55.000 0.00 0.00 46.68 4.35
195 203 0.253610 AAGGTCACCACCAACGACAA 59.746 50.000 0.00 0.00 46.68 3.18
204 212 0.391597 ACCAACGACAACGAGTCCAT 59.608 50.000 0.00 0.00 44.66 3.41
206 214 1.336887 CCAACGACAACGAGTCCATCT 60.337 52.381 0.00 0.00 44.66 2.90
279 287 1.003051 GGCCTCCTCCCCTAACTCA 59.997 63.158 0.00 0.00 0.00 3.41
284 292 3.388913 CCTCCTCCCCTAACTCAAAGAT 58.611 50.000 0.00 0.00 0.00 2.40
288 296 5.788430 TCCTCCCCTAACTCAAAGATATCA 58.212 41.667 5.32 0.00 0.00 2.15
290 298 5.509840 CCTCCCCTAACTCAAAGATATCACG 60.510 48.000 5.32 0.00 0.00 4.35
293 301 4.499188 CCCTAACTCAAAGATATCACGCGA 60.499 45.833 15.93 0.00 0.00 5.87
294 302 4.441415 CCTAACTCAAAGATATCACGCGAC 59.559 45.833 15.93 0.00 0.00 5.19
296 304 3.845178 ACTCAAAGATATCACGCGACAA 58.155 40.909 15.93 0.00 0.00 3.18
298 306 2.603110 TCAAAGATATCACGCGACAAGC 59.397 45.455 15.93 0.00 43.95 4.01
300 308 2.586258 AGATATCACGCGACAAGCTT 57.414 45.000 15.93 0.00 45.59 3.74
306 314 1.373497 ACGCGACAAGCTTCTCCTG 60.373 57.895 15.93 0.00 45.59 3.86
310 318 0.318441 CGACAAGCTTCTCCTGTCCA 59.682 55.000 9.36 0.00 0.00 4.02
327 335 3.255642 TGTCCATAGTTTTGGCTTTCTGC 59.744 43.478 0.00 0.00 36.66 4.26
340 348 2.860062 CTTTCTGCACATGCTTGCTAC 58.140 47.619 9.44 0.00 43.41 3.58
342 350 1.445871 TCTGCACATGCTTGCTACTG 58.554 50.000 9.44 0.00 43.41 2.74
352 360 6.313658 CACATGCTTGCTACTGTATGAAACTA 59.686 38.462 0.00 0.00 32.13 2.24
357 365 8.092068 TGCTTGCTACTGTATGAAACTAAACTA 58.908 33.333 0.00 0.00 0.00 2.24
359 367 8.997621 TTGCTACTGTATGAAACTAAACTAGG 57.002 34.615 0.00 0.00 0.00 3.02
360 368 8.130671 TGCTACTGTATGAAACTAAACTAGGT 57.869 34.615 0.00 0.00 0.00 3.08
361 369 8.033038 TGCTACTGTATGAAACTAAACTAGGTG 58.967 37.037 0.00 0.00 0.00 4.00
362 370 8.033626 GCTACTGTATGAAACTAAACTAGGTGT 58.966 37.037 0.00 0.00 0.00 4.16
363 371 9.924650 CTACTGTATGAAACTAAACTAGGTGTT 57.075 33.333 0.00 0.00 41.29 3.32
364 372 8.603242 ACTGTATGAAACTAAACTAGGTGTTG 57.397 34.615 0.00 0.00 39.13 3.33
365 373 8.426489 ACTGTATGAAACTAAACTAGGTGTTGA 58.574 33.333 0.00 0.00 39.13 3.18
366 374 9.436957 CTGTATGAAACTAAACTAGGTGTTGAT 57.563 33.333 0.00 0.00 39.13 2.57
367 375 9.431887 TGTATGAAACTAAACTAGGTGTTGATC 57.568 33.333 0.00 0.00 39.13 2.92
368 376 9.654663 GTATGAAACTAAACTAGGTGTTGATCT 57.345 33.333 0.00 0.00 39.13 2.75
370 378 8.603242 TGAAACTAAACTAGGTGTTGATCTTC 57.397 34.615 0.00 0.00 39.13 2.87
371 379 8.429641 TGAAACTAAACTAGGTGTTGATCTTCT 58.570 33.333 0.00 0.00 39.13 2.85
372 380 9.274206 GAAACTAAACTAGGTGTTGATCTTCTT 57.726 33.333 0.00 0.00 39.13 2.52
373 381 8.834749 AACTAAACTAGGTGTTGATCTTCTTC 57.165 34.615 0.00 0.00 39.13 2.87
374 382 7.963532 ACTAAACTAGGTGTTGATCTTCTTCA 58.036 34.615 0.00 0.00 39.13 3.02
375 383 8.429641 ACTAAACTAGGTGTTGATCTTCTTCAA 58.570 33.333 0.00 0.00 39.13 2.69
376 384 7.736447 AAACTAGGTGTTGATCTTCTTCAAG 57.264 36.000 0.00 0.00 39.13 3.02
377 385 5.241662 ACTAGGTGTTGATCTTCTTCAAGC 58.758 41.667 0.00 0.00 36.34 4.01
378 386 4.363991 AGGTGTTGATCTTCTTCAAGCT 57.636 40.909 0.00 0.00 36.34 3.74
379 387 5.489792 AGGTGTTGATCTTCTTCAAGCTA 57.510 39.130 0.00 0.00 36.34 3.32
380 388 5.486526 AGGTGTTGATCTTCTTCAAGCTAG 58.513 41.667 0.00 0.00 36.34 3.42
381 389 4.094146 GGTGTTGATCTTCTTCAAGCTAGC 59.906 45.833 6.62 6.62 36.34 3.42
382 390 4.094146 GTGTTGATCTTCTTCAAGCTAGCC 59.906 45.833 12.13 0.00 36.34 3.93
383 391 4.019860 TGTTGATCTTCTTCAAGCTAGCCT 60.020 41.667 12.13 0.00 36.34 4.58
408 416 3.107601 AGTTGTTCTATAGCCTGCAGGA 58.892 45.455 37.21 17.52 37.39 3.86
431 439 2.584608 GCACATCCCCGCTAGTGT 59.415 61.111 1.99 0.00 34.59 3.55
432 440 1.815421 GCACATCCCCGCTAGTGTG 60.815 63.158 1.99 3.67 43.54 3.82
443 451 3.282745 CTAGTGTGCGGCCTCACGT 62.283 63.158 20.44 12.84 39.70 4.49
486 495 2.202797 GCTGCGCTCATCGAGGAA 60.203 61.111 9.73 0.00 41.67 3.36
487 496 1.593750 GCTGCGCTCATCGAGGAAT 60.594 57.895 9.73 0.00 41.67 3.01
488 497 1.829349 GCTGCGCTCATCGAGGAATG 61.829 60.000 9.73 0.00 41.67 2.67
489 498 0.529337 CTGCGCTCATCGAGGAATGT 60.529 55.000 9.73 0.00 41.67 2.71
490 499 0.528466 TGCGCTCATCGAGGAATGTC 60.528 55.000 9.73 0.00 41.67 3.06
491 500 0.249238 GCGCTCATCGAGGAATGTCT 60.249 55.000 0.00 0.00 41.67 3.41
492 501 1.804372 GCGCTCATCGAGGAATGTCTT 60.804 52.381 0.00 0.00 41.67 3.01
493 502 2.544685 CGCTCATCGAGGAATGTCTTT 58.455 47.619 0.00 0.00 41.67 2.52
494 503 2.283617 CGCTCATCGAGGAATGTCTTTG 59.716 50.000 0.00 0.00 41.67 2.77
495 504 2.031437 GCTCATCGAGGAATGTCTTTGC 59.969 50.000 0.00 0.00 0.00 3.68
496 505 2.611292 CTCATCGAGGAATGTCTTTGCC 59.389 50.000 0.00 0.00 0.00 4.52
497 506 2.237143 TCATCGAGGAATGTCTTTGCCT 59.763 45.455 0.00 0.00 0.00 4.75
498 507 2.386661 TCGAGGAATGTCTTTGCCTC 57.613 50.000 0.00 0.00 42.71 4.70
500 509 2.100605 GAGGAATGTCTTTGCCTCGT 57.899 50.000 0.00 0.00 37.75 4.18
501 510 2.427506 GAGGAATGTCTTTGCCTCGTT 58.572 47.619 0.00 0.00 37.75 3.85
502 511 3.596214 GAGGAATGTCTTTGCCTCGTTA 58.404 45.455 0.00 0.00 37.75 3.18
503 512 3.600388 AGGAATGTCTTTGCCTCGTTAG 58.400 45.455 0.00 0.00 0.00 2.34
504 513 3.260884 AGGAATGTCTTTGCCTCGTTAGA 59.739 43.478 0.00 0.00 0.00 2.10
505 514 4.000988 GGAATGTCTTTGCCTCGTTAGAA 58.999 43.478 0.00 0.00 0.00 2.10
506 515 4.142881 GGAATGTCTTTGCCTCGTTAGAAC 60.143 45.833 0.00 0.00 0.00 3.01
507 516 3.462483 TGTCTTTGCCTCGTTAGAACA 57.538 42.857 0.00 0.00 0.00 3.18
508 517 3.799366 TGTCTTTGCCTCGTTAGAACAA 58.201 40.909 0.00 0.00 0.00 2.83
509 518 4.193090 TGTCTTTGCCTCGTTAGAACAAA 58.807 39.130 0.00 0.00 33.87 2.83
510 519 4.819630 TGTCTTTGCCTCGTTAGAACAAAT 59.180 37.500 0.00 0.00 34.25 2.32
511 520 5.147162 GTCTTTGCCTCGTTAGAACAAATG 58.853 41.667 0.00 0.00 34.25 2.32
512 521 5.049680 GTCTTTGCCTCGTTAGAACAAATGA 60.050 40.000 0.00 0.00 34.25 2.57
513 522 4.742438 TTGCCTCGTTAGAACAAATGAC 57.258 40.909 0.00 0.00 0.00 3.06
514 523 3.071479 TGCCTCGTTAGAACAAATGACC 58.929 45.455 0.00 0.00 0.00 4.02
515 524 2.418976 GCCTCGTTAGAACAAATGACCC 59.581 50.000 0.00 0.00 0.00 4.46
516 525 3.868754 GCCTCGTTAGAACAAATGACCCT 60.869 47.826 0.00 0.00 0.00 4.34
517 526 4.324267 CCTCGTTAGAACAAATGACCCTT 58.676 43.478 0.00 0.00 0.00 3.95
518 527 4.392138 CCTCGTTAGAACAAATGACCCTTC 59.608 45.833 0.00 0.00 0.00 3.46
519 528 4.320870 TCGTTAGAACAAATGACCCTTCC 58.679 43.478 0.00 0.00 0.00 3.46
520 529 4.041198 TCGTTAGAACAAATGACCCTTCCT 59.959 41.667 0.00 0.00 0.00 3.36
521 530 5.246656 TCGTTAGAACAAATGACCCTTCCTA 59.753 40.000 0.00 0.00 0.00 2.94
522 531 5.350640 CGTTAGAACAAATGACCCTTCCTAC 59.649 44.000 0.00 0.00 0.00 3.18
523 532 4.993705 AGAACAAATGACCCTTCCTACA 57.006 40.909 0.00 0.00 0.00 2.74
524 533 4.911390 AGAACAAATGACCCTTCCTACAG 58.089 43.478 0.00 0.00 0.00 2.74
525 534 3.073274 ACAAATGACCCTTCCTACAGC 57.927 47.619 0.00 0.00 0.00 4.40
526 535 2.009774 CAAATGACCCTTCCTACAGCG 58.990 52.381 0.00 0.00 0.00 5.18
527 536 0.541863 AATGACCCTTCCTACAGCGG 59.458 55.000 0.00 0.00 0.00 5.52
533 542 1.447643 CTTCCTACAGCGGGATGGG 59.552 63.158 0.00 0.00 32.41 4.00
564 573 3.536570 GCTGACTAGGGACAAGGATTTC 58.463 50.000 0.00 0.00 0.00 2.17
565 574 3.786635 CTGACTAGGGACAAGGATTTCG 58.213 50.000 0.00 0.00 0.00 3.46
570 579 1.204941 AGGGACAAGGATTTCGACGAG 59.795 52.381 0.00 0.00 0.00 4.18
573 582 2.159085 GGACAAGGATTTCGACGAGGAT 60.159 50.000 0.00 0.00 0.00 3.24
577 586 2.379972 AGGATTTCGACGAGGATGACT 58.620 47.619 0.00 0.00 0.00 3.41
578 587 2.099921 AGGATTTCGACGAGGATGACTG 59.900 50.000 0.00 0.00 0.00 3.51
609 624 1.730902 CCTCATCGCCATCGCTACG 60.731 63.158 0.00 0.00 35.26 3.51
648 663 4.811557 GTGGATAAGAAGGAATGGAACGAG 59.188 45.833 0.00 0.00 0.00 4.18
804 820 4.546570 CGGTTTTGAGAATTTTGGGTCTC 58.453 43.478 0.00 0.00 40.64 3.36
813 854 6.382570 TGAGAATTTTGGGTCTCAAAGGAAAA 59.617 34.615 0.00 0.00 45.58 2.29
839 880 2.100197 GATTTAGGTTGTCCTTGGGCC 58.900 52.381 0.00 0.00 42.12 5.80
851 892 1.228245 TTGGGCCTGAAGTCTGCAC 60.228 57.895 4.53 0.00 0.00 4.57
852 893 1.993701 TTGGGCCTGAAGTCTGCACA 61.994 55.000 4.53 0.00 36.45 4.57
853 894 1.001641 GGGCCTGAAGTCTGCACAT 60.002 57.895 0.84 0.00 0.00 3.21
915 963 2.927580 GCCGTCACTCTTCCGGTCA 61.928 63.158 0.00 0.00 43.56 4.02
927 975 2.494918 CGGTCATCCCCACTCGTC 59.505 66.667 0.00 0.00 0.00 4.20
928 976 2.052690 CGGTCATCCCCACTCGTCT 61.053 63.158 0.00 0.00 0.00 4.18
930 978 1.677637 GGTCATCCCCACTCGTCTCC 61.678 65.000 0.00 0.00 0.00 3.71
931 979 1.381327 TCATCCCCACTCGTCTCCC 60.381 63.158 0.00 0.00 0.00 4.30
932 980 1.381872 CATCCCCACTCGTCTCCCT 60.382 63.158 0.00 0.00 0.00 4.20
972 1027 2.261671 CCGTGAGACCGAACCCAG 59.738 66.667 0.00 0.00 0.00 4.45
1432 1488 3.455685 CGTCGGTTGCTACGGAAC 58.544 61.111 9.90 4.77 35.67 3.62
1477 1534 8.617809 TCATAAGTTGTTTACTGTTCTTCAACC 58.382 33.333 0.00 0.00 37.12 3.77
1628 1692 9.092876 TCAATTGGTTTACTTTAAGCTTTTGTG 57.907 29.630 3.20 0.00 0.00 3.33
1636 1700 5.660460 ACTTTAAGCTTTTGTGAAGTTGGG 58.340 37.500 3.20 0.00 0.00 4.12
1638 1702 1.484038 AGCTTTTGTGAAGTTGGGCA 58.516 45.000 0.00 0.00 0.00 5.36
1644 1708 2.479566 TGTGAAGTTGGGCATCTCTC 57.520 50.000 0.00 0.00 0.00 3.20
1651 1722 1.903294 TGGGCATCTCTCTGCTCAC 59.097 57.895 0.00 0.00 45.25 3.51
1656 1727 3.244491 GGGCATCTCTCTGCTCACAATAT 60.244 47.826 0.00 0.00 42.43 1.28
1674 1745 5.536161 ACAATATTTTTCTCACTGCCTGTGT 59.464 36.000 1.49 0.00 46.27 3.72
1729 1800 4.061131 TGATGACCCAGAGAAGGAAGTA 57.939 45.455 0.00 0.00 0.00 2.24
1826 1898 5.995897 AGTTATGTATTCTAAATCGTGCCCC 59.004 40.000 0.00 0.00 0.00 5.80
1840 1912 1.073199 GCCCCGATTATGGACCAGG 59.927 63.158 0.00 0.00 0.00 4.45
1856 1928 6.266080 TGGACCAGGTTACCTATTAAGAAGA 58.734 40.000 2.52 0.00 29.64 2.87
1975 2047 7.673641 AGATGACAAGAATCCTGATAAGACT 57.326 36.000 0.00 0.00 0.00 3.24
2138 2211 0.035152 CCATACAGCAGCCTTCCACA 60.035 55.000 0.00 0.00 0.00 4.17
2166 2239 5.941788 ACATTCATGGTTATTACTCCCTCC 58.058 41.667 0.00 0.00 0.00 4.30
2167 2240 4.682778 TTCATGGTTATTACTCCCTCCG 57.317 45.455 0.00 0.00 0.00 4.63
2168 2241 3.649843 TCATGGTTATTACTCCCTCCGT 58.350 45.455 0.00 0.00 0.00 4.69
2169 2242 4.035112 TCATGGTTATTACTCCCTCCGTT 58.965 43.478 0.00 0.00 0.00 4.44
2170 2243 4.100498 TCATGGTTATTACTCCCTCCGTTC 59.900 45.833 0.00 0.00 0.00 3.95
2171 2244 2.767960 TGGTTATTACTCCCTCCGTTCC 59.232 50.000 0.00 0.00 0.00 3.62
2172 2245 3.036819 GGTTATTACTCCCTCCGTTCCT 58.963 50.000 0.00 0.00 0.00 3.36
2173 2246 4.218312 GGTTATTACTCCCTCCGTTCCTA 58.782 47.826 0.00 0.00 0.00 2.94
2174 2247 4.651045 GGTTATTACTCCCTCCGTTCCTAA 59.349 45.833 0.00 0.00 0.00 2.69
2175 2248 5.129320 GGTTATTACTCCCTCCGTTCCTAAA 59.871 44.000 0.00 0.00 0.00 1.85
2176 2249 6.183361 GGTTATTACTCCCTCCGTTCCTAAAT 60.183 42.308 0.00 0.00 0.00 1.40
2177 2250 7.015584 GGTTATTACTCCCTCCGTTCCTAAATA 59.984 40.741 0.00 0.00 0.00 1.40
2178 2251 8.591940 GTTATTACTCCCTCCGTTCCTAAATAT 58.408 37.037 0.00 0.00 0.00 1.28
2179 2252 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2180 2253 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2181 2254 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2182 2255 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2183 2256 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2184 2257 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2185 2258 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2186 2259 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2187 2260 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2188 2261 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2189 2262 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2190 2263 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2191 2264 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2202 2275 8.833231 ATTTGTCTTTCTAGAGATTTCAACGA 57.167 30.769 0.00 0.00 0.00 3.85
2203 2276 7.875316 TTGTCTTTCTAGAGATTTCAACGAG 57.125 36.000 0.00 0.00 0.00 4.18
2204 2277 6.982852 TGTCTTTCTAGAGATTTCAACGAGT 58.017 36.000 0.00 0.00 0.00 4.18
2205 2278 7.434492 TGTCTTTCTAGAGATTTCAACGAGTT 58.566 34.615 0.00 0.00 0.00 3.01
2206 2279 8.573885 TGTCTTTCTAGAGATTTCAACGAGTTA 58.426 33.333 0.00 0.00 0.00 2.24
2207 2280 8.852380 GTCTTTCTAGAGATTTCAACGAGTTAC 58.148 37.037 0.00 0.00 0.00 2.50
2208 2281 8.794553 TCTTTCTAGAGATTTCAACGAGTTACT 58.205 33.333 0.00 0.00 0.00 2.24
2210 2283 9.837525 TTTCTAGAGATTTCAACGAGTTACTAC 57.162 33.333 0.00 0.00 0.00 2.73
2211 2284 8.557592 TCTAGAGATTTCAACGAGTTACTACA 57.442 34.615 0.00 0.00 0.00 2.74
2212 2285 9.175312 TCTAGAGATTTCAACGAGTTACTACAT 57.825 33.333 0.00 0.00 0.00 2.29
2215 2288 8.737175 AGAGATTTCAACGAGTTACTACATACA 58.263 33.333 0.00 0.00 0.00 2.29
2216 2289 9.350357 GAGATTTCAACGAGTTACTACATACAA 57.650 33.333 0.00 0.00 0.00 2.41
2217 2290 9.701098 AGATTTCAACGAGTTACTACATACAAA 57.299 29.630 0.00 0.00 0.00 2.83
2218 2291 9.953825 GATTTCAACGAGTTACTACATACAAAG 57.046 33.333 0.00 0.00 0.00 2.77
2219 2292 6.939551 TCAACGAGTTACTACATACAAAGC 57.060 37.500 0.00 0.00 0.00 3.51
2220 2293 6.448852 TCAACGAGTTACTACATACAAAGCA 58.551 36.000 0.00 0.00 0.00 3.91
2221 2294 6.924612 TCAACGAGTTACTACATACAAAGCAA 59.075 34.615 0.00 0.00 0.00 3.91
2222 2295 7.438757 TCAACGAGTTACTACATACAAAGCAAA 59.561 33.333 0.00 0.00 0.00 3.68
2223 2296 7.718272 ACGAGTTACTACATACAAAGCAAAA 57.282 32.000 0.00 0.00 0.00 2.44
2224 2297 8.319143 ACGAGTTACTACATACAAAGCAAAAT 57.681 30.769 0.00 0.00 0.00 1.82
2225 2298 8.227791 ACGAGTTACTACATACAAAGCAAAATG 58.772 33.333 0.00 0.00 0.00 2.32
2226 2299 8.227791 CGAGTTACTACATACAAAGCAAAATGT 58.772 33.333 0.00 0.00 36.56 2.71
2227 2300 9.329913 GAGTTACTACATACAAAGCAAAATGTG 57.670 33.333 0.00 0.00 34.54 3.21
2228 2301 8.846211 AGTTACTACATACAAAGCAAAATGTGT 58.154 29.630 0.00 0.00 34.54 3.72
2229 2302 8.901748 GTTACTACATACAAAGCAAAATGTGTG 58.098 33.333 0.00 0.00 42.31 3.82
2230 2303 7.270757 ACTACATACAAAGCAAAATGTGTGA 57.729 32.000 9.18 0.00 39.99 3.58
2231 2304 7.711846 ACTACATACAAAGCAAAATGTGTGAA 58.288 30.769 9.18 0.00 39.99 3.18
2232 2305 8.359642 ACTACATACAAAGCAAAATGTGTGAAT 58.640 29.630 9.18 0.00 39.99 2.57
2233 2306 7.642071 ACATACAAAGCAAAATGTGTGAATC 57.358 32.000 9.18 0.00 39.99 2.52
2234 2307 7.436118 ACATACAAAGCAAAATGTGTGAATCT 58.564 30.769 9.18 0.00 39.99 2.40
2235 2308 8.575589 ACATACAAAGCAAAATGTGTGAATCTA 58.424 29.630 9.18 0.00 39.99 1.98
2236 2309 8.853345 CATACAAAGCAAAATGTGTGAATCTAC 58.147 33.333 0.00 0.00 39.99 2.59
2237 2310 6.804677 ACAAAGCAAAATGTGTGAATCTACA 58.195 32.000 0.00 0.00 0.00 2.74
2278 2351 7.946655 CATACATTCGTATGTGGTAGTTCAT 57.053 36.000 16.91 0.00 46.70 2.57
2279 2352 8.365399 CATACATTCGTATGTGGTAGTTCATT 57.635 34.615 16.91 0.00 46.70 2.57
2280 2353 8.826710 CATACATTCGTATGTGGTAGTTCATTT 58.173 33.333 16.91 0.00 46.70 2.32
2281 2354 7.072177 ACATTCGTATGTGGTAGTTCATTTG 57.928 36.000 6.89 0.00 43.29 2.32
2282 2355 6.876789 ACATTCGTATGTGGTAGTTCATTTGA 59.123 34.615 6.89 0.00 43.29 2.69
2283 2356 7.389330 ACATTCGTATGTGGTAGTTCATTTGAA 59.611 33.333 6.89 0.00 43.29 2.69
2284 2357 7.731882 TTCGTATGTGGTAGTTCATTTGAAA 57.268 32.000 0.00 0.00 35.58 2.69
2285 2358 7.915293 TCGTATGTGGTAGTTCATTTGAAAT 57.085 32.000 0.00 0.00 35.58 2.17
2286 2359 7.747888 TCGTATGTGGTAGTTCATTTGAAATG 58.252 34.615 11.54 11.54 35.58 2.32
2287 2360 7.389330 TCGTATGTGGTAGTTCATTTGAAATGT 59.611 33.333 16.62 1.69 35.58 2.71
2288 2361 7.692291 CGTATGTGGTAGTTCATTTGAAATGTC 59.308 37.037 16.62 11.39 35.58 3.06
2289 2362 7.765695 ATGTGGTAGTTCATTTGAAATGTCT 57.234 32.000 16.62 16.73 35.58 3.41
2290 2363 8.862325 ATGTGGTAGTTCATTTGAAATGTCTA 57.138 30.769 16.62 15.91 35.58 2.59
2291 2364 8.322906 TGTGGTAGTTCATTTGAAATGTCTAG 57.677 34.615 16.62 0.00 35.58 2.43
2292 2365 8.154203 TGTGGTAGTTCATTTGAAATGTCTAGA 58.846 33.333 16.62 8.31 35.58 2.43
2293 2366 8.999431 GTGGTAGTTCATTTGAAATGTCTAGAA 58.001 33.333 16.62 1.82 35.58 2.10
2294 2367 9.567776 TGGTAGTTCATTTGAAATGTCTAGAAA 57.432 29.630 16.62 1.15 35.58 2.52
2312 2385 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
2313 2386 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2314 2387 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2315 2388 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2316 2389 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2317 2390 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
2318 2391 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
2319 2392 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2320 2393 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2321 2394 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2377 2452 2.997986 CAAATGGCATTTTCAGGCTGAC 59.002 45.455 22.26 5.00 0.00 3.51
2499 2576 0.107831 CTGGTCTGTTTCCCGGTTCA 59.892 55.000 0.00 0.00 0.00 3.18
2500 2577 0.179040 TGGTCTGTTTCCCGGTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
2778 2855 8.296713 GTGCTTCCTGTTTCAATTATAAGAACA 58.703 33.333 0.00 0.00 0.00 3.18
2900 2977 5.779529 ACGACTTCAACTCCTTGTAAGTA 57.220 39.130 0.00 0.00 32.49 2.24
2904 2981 6.866770 CGACTTCAACTCCTTGTAAGTATTGA 59.133 38.462 0.00 0.00 32.49 2.57
3067 3144 8.470002 ACACTAATTTGCTCATTCCTTAATTCC 58.530 33.333 0.00 0.00 0.00 3.01
3170 3251 6.255237 TGCACACATGTTTCTGTTGTTTAATG 59.745 34.615 0.00 0.00 0.00 1.90
3196 3277 3.350912 CGTGTTTTTACAGTGCAGTGTC 58.649 45.455 29.84 15.88 31.46 3.67
3199 3280 0.941542 TTTTACAGTGCAGTGTCGGC 59.058 50.000 29.84 0.00 31.46 5.54
3244 3325 9.570468 TTGTGATATATATATACTCCCTCCGTC 57.430 37.037 5.19 0.00 0.00 4.79
3245 3326 8.162085 TGTGATATATATATACTCCCTCCGTCC 58.838 40.741 5.19 0.00 0.00 4.79
3246 3327 7.333921 GTGATATATATATACTCCCTCCGTCCG 59.666 44.444 5.19 0.00 0.00 4.79
3247 3328 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
3248 3329 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
3249 3330 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3250 3331 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3251 3332 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3252 3333 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3253 3334 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3254 3335 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3255 3336 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3256 3337 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3257 3338 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3258 3339 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3259 3340 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
3260 3341 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
3261 3342 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
3262 3343 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
3263 3344 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
3264 3345 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
3265 3346 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
3266 3347 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
3267 3348 6.822170 GTCCGGAAATACTTGTCCTAGAAATT 59.178 38.462 5.23 0.00 0.00 1.82
3268 3349 6.821665 TCCGGAAATACTTGTCCTAGAAATTG 59.178 38.462 0.00 0.00 0.00 2.32
3269 3350 6.821665 CCGGAAATACTTGTCCTAGAAATTGA 59.178 38.462 0.00 0.00 0.00 2.57
3270 3351 7.499232 CCGGAAATACTTGTCCTAGAAATTGAT 59.501 37.037 0.00 0.00 0.00 2.57
3271 3352 9.542462 CGGAAATACTTGTCCTAGAAATTGATA 57.458 33.333 0.00 0.00 0.00 2.15
3321 3402 9.838339 ATAAGTCTAGATACAACCATTTTGAGG 57.162 33.333 0.00 0.00 0.00 3.86
3322 3403 7.496346 AGTCTAGATACAACCATTTTGAGGA 57.504 36.000 0.00 0.00 0.00 3.71
3323 3404 7.331791 AGTCTAGATACAACCATTTTGAGGAC 58.668 38.462 0.00 0.00 0.00 3.85
3324 3405 7.038302 AGTCTAGATACAACCATTTTGAGGACA 60.038 37.037 0.00 0.00 0.00 4.02
3325 3406 7.606456 GTCTAGATACAACCATTTTGAGGACAA 59.394 37.037 0.00 0.00 0.00 3.18
3326 3407 6.824305 AGATACAACCATTTTGAGGACAAG 57.176 37.500 0.00 0.00 37.32 3.16
3327 3408 6.306987 AGATACAACCATTTTGAGGACAAGT 58.693 36.000 0.00 0.00 37.32 3.16
3328 3409 7.458397 AGATACAACCATTTTGAGGACAAGTA 58.542 34.615 0.00 0.00 37.32 2.24
3329 3410 8.109634 AGATACAACCATTTTGAGGACAAGTAT 58.890 33.333 0.00 0.00 37.32 2.12
3330 3411 6.976934 ACAACCATTTTGAGGACAAGTATT 57.023 33.333 0.00 0.00 37.32 1.89
3331 3412 7.360113 ACAACCATTTTGAGGACAAGTATTT 57.640 32.000 0.00 0.00 37.32 1.40
3332 3413 7.433680 ACAACCATTTTGAGGACAAGTATTTC 58.566 34.615 0.00 0.00 37.32 2.17
3333 3414 6.590234 ACCATTTTGAGGACAAGTATTTCC 57.410 37.500 0.00 0.00 37.32 3.13
3334 3415 5.183140 ACCATTTTGAGGACAAGTATTTCCG 59.817 40.000 0.00 0.00 36.95 4.30
3335 3416 5.393027 CCATTTTGAGGACAAGTATTTCCGG 60.393 44.000 0.00 0.00 36.95 5.14
3336 3417 4.627284 TTTGAGGACAAGTATTTCCGGA 57.373 40.909 0.00 0.00 36.95 5.14
3337 3418 3.604875 TGAGGACAAGTATTTCCGGAC 57.395 47.619 1.83 0.00 36.95 4.79
3338 3419 2.094390 TGAGGACAAGTATTTCCGGACG 60.094 50.000 1.83 0.00 36.95 4.79
3339 3420 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
3340 3421 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
3341 3422 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3342 3423 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3343 3424 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3344 3425 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3345 3426 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3346 3427 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3347 3428 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3348 3429 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3349 3430 0.754217 TTCCGGACGGAGGGAGTATG 60.754 60.000 13.64 0.00 46.06 2.39
3350 3431 1.455217 CCGGACGGAGGGAGTATGT 60.455 63.158 4.40 0.00 37.50 2.29
3351 3432 0.179009 CCGGACGGAGGGAGTATGTA 60.179 60.000 4.40 0.00 37.50 2.29
3352 3433 1.547223 CCGGACGGAGGGAGTATGTAT 60.547 57.143 4.40 0.00 37.50 2.29
3353 3434 2.290514 CCGGACGGAGGGAGTATGTATA 60.291 54.545 4.40 0.00 37.50 1.47
3354 3435 3.618351 CGGACGGAGGGAGTATGTATAT 58.382 50.000 0.00 0.00 0.00 0.86
3355 3436 4.384537 CCGGACGGAGGGAGTATGTATATA 60.385 50.000 4.40 0.00 37.50 0.86
3356 3437 5.374921 CGGACGGAGGGAGTATGTATATAT 58.625 45.833 0.00 0.00 0.00 0.86
3357 3438 6.464892 CCGGACGGAGGGAGTATGTATATATA 60.465 46.154 4.40 0.00 37.50 0.86
3358 3439 7.166851 CGGACGGAGGGAGTATGTATATATAT 58.833 42.308 0.00 0.00 0.00 0.86
3359 3440 8.316946 CGGACGGAGGGAGTATGTATATATATA 58.683 40.741 0.00 0.00 0.00 0.86
3410 3491 6.507900 AGAGTGTCAGATTATGTACAATCCG 58.492 40.000 0.00 0.00 36.02 4.18
3519 3608 3.185880 AGCAAAGGTAGTACTCCCTCA 57.814 47.619 7.57 0.00 0.00 3.86
3530 3619 6.726764 GGTAGTACTCCCTCAGATCCATATTT 59.273 42.308 0.00 0.00 0.00 1.40
3582 3671 6.797513 CACTGAAATACGTCTAGATACATCCG 59.202 42.308 0.00 0.00 0.00 4.18
3689 3778 3.441572 ACTGATGCATTCTGTTACAAGCC 59.558 43.478 0.00 0.00 33.12 4.35
3792 3883 5.045213 TCCAAAGACAGGATTACCTTATGCA 60.045 40.000 0.00 0.00 45.36 3.96
3904 3997 5.531122 AGTAAGTGAAACAGTGCTCAGTA 57.469 39.130 4.10 0.00 41.43 2.74
3937 4030 5.224888 AGACTTGCAACATGCTAACATTTG 58.775 37.500 0.00 0.00 45.31 2.32
3948 4045 1.062002 CTAACATTTGCTACGGGTGCG 59.938 52.381 0.00 0.00 0.00 5.34
4060 4157 5.875359 ACATTCTACGCCTAAGAAGAAAAGG 59.125 40.000 0.00 0.00 36.46 3.11
4305 4402 0.248621 GGTTGCTTACGATGCCATGC 60.249 55.000 0.00 0.00 0.00 4.06
4329 4435 6.145371 GCTAGCATTAGAAACAGTAGAGATGC 59.855 42.308 10.63 0.00 39.02 3.91
4528 4660 4.032331 GTGGTTTTTGTTGACGACATTTGG 59.968 41.667 0.00 0.00 38.26 3.28
4583 4752 2.433664 CCGTGACGCCCACCTAAC 60.434 66.667 0.00 0.00 42.76 2.34
4620 4789 3.699538 ACAAGATGATACGCCACTACTCA 59.300 43.478 0.00 0.00 0.00 3.41
4628 4797 1.361668 CGCCACTACTCACATGGTGC 61.362 60.000 0.00 0.00 37.21 5.01
4629 4798 1.026718 GCCACTACTCACATGGTGCC 61.027 60.000 0.00 0.00 35.79 5.01
4652 4821 1.464219 GCAGCAAGAGAGAACAAGAGC 59.536 52.381 0.00 0.00 0.00 4.09
4653 4822 2.075338 CAGCAAGAGAGAACAAGAGCC 58.925 52.381 0.00 0.00 0.00 4.70
4695 4864 1.129917 CCCACCATCAGAGCTCATCT 58.870 55.000 17.77 0.00 39.56 2.90
4702 4871 3.196463 CATCAGAGCTCATCTCCAACAC 58.804 50.000 17.77 0.00 42.90 3.32
4748 4917 0.106819 GCATCCTGGAGCTGTTGGAT 60.107 55.000 1.52 0.00 39.64 3.41
4762 4931 1.067354 GTTGGATAACGTCGGTGGTCT 60.067 52.381 0.00 0.00 0.00 3.85
4769 4938 0.894184 ACGTCGGTGGTCTGATGACT 60.894 55.000 0.00 0.00 42.54 3.41
4860 5098 6.095377 GGAAGGTGATGATCAACACAAATTC 58.905 40.000 30.05 26.71 36.30 2.17
4867 5105 7.959651 GTGATGATCAACACAAATTCAGTACTC 59.040 37.037 26.06 3.10 37.05 2.59
4941 5179 0.806102 CGGAGGGAGTATGCAACACG 60.806 60.000 0.00 0.00 0.00 4.49
5003 5241 6.462768 CCATCCAAGCAGAGATATATAGGAGC 60.463 46.154 0.00 0.00 0.00 4.70
5072 5310 4.799564 TTCATATCAAACACCCAAAGCC 57.200 40.909 0.00 0.00 0.00 4.35
5150 5388 2.743752 CGAGCTTGCACATCCACCG 61.744 63.158 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.531200 AGCACCCTCTACGTACAAGC 59.469 55.000 0.00 0.00 0.00 4.01
45 46 2.307049 GCAAAACAACTCGGACATTCG 58.693 47.619 0.00 0.00 0.00 3.34
55 56 1.342975 ACCAAGGGAGGCAAAACAACT 60.343 47.619 0.00 0.00 0.00 3.16
58 59 0.821711 CGACCAAGGGAGGCAAAACA 60.822 55.000 0.00 0.00 0.00 2.83
59 60 0.822121 ACGACCAAGGGAGGCAAAAC 60.822 55.000 0.00 0.00 0.00 2.43
83 91 1.307097 GATGGATGCTTGAGTGGCTC 58.693 55.000 0.00 0.00 0.00 4.70
109 117 2.483106 CTGCTCCATGAACTGTGTTCAG 59.517 50.000 16.50 9.77 46.18 3.02
134 142 1.506493 AGCTGAGCAACTCTTTGTCG 58.494 50.000 7.39 0.00 34.90 4.35
137 145 3.059051 GTCAGAAGCTGAGCAACTCTTTG 60.059 47.826 7.39 0.00 41.46 2.77
138 146 3.137533 GTCAGAAGCTGAGCAACTCTTT 58.862 45.455 7.39 0.00 41.46 2.52
139 147 2.765122 GTCAGAAGCTGAGCAACTCTT 58.235 47.619 7.39 0.00 41.46 2.85
155 163 1.503542 GCCTTGACAATGGCGTCAG 59.496 57.895 11.33 0.00 46.14 3.51
175 183 0.179067 TGTCGTTGGTGGTGACCTTC 60.179 55.000 2.11 0.00 43.58 3.46
183 191 1.219522 GGACTCGTTGTCGTTGGTGG 61.220 60.000 5.54 0.00 46.24 4.61
193 201 1.354337 CGGTGCAGATGGACTCGTTG 61.354 60.000 4.44 0.00 36.56 4.10
194 202 1.079819 CGGTGCAGATGGACTCGTT 60.080 57.895 4.44 0.00 36.56 3.85
195 203 1.938657 CTCGGTGCAGATGGACTCGT 61.939 60.000 4.44 0.00 36.56 4.18
204 212 1.923227 CTCGTGTAGCTCGGTGCAGA 61.923 60.000 4.74 0.00 45.94 4.26
206 214 2.566529 CTCGTGTAGCTCGGTGCA 59.433 61.111 4.74 0.00 45.94 4.57
273 281 4.989044 TGTCGCGTGATATCTTTGAGTTA 58.011 39.130 5.77 0.00 0.00 2.24
279 287 2.893637 AGCTTGTCGCGTGATATCTTT 58.106 42.857 5.77 0.00 45.59 2.52
284 292 1.469251 GGAGAAGCTTGTCGCGTGATA 60.469 52.381 16.61 0.00 45.59 2.15
288 296 1.373497 CAGGAGAAGCTTGTCGCGT 60.373 57.895 16.61 2.09 45.59 6.01
290 298 2.450619 GACAGGAGAAGCTTGTCGC 58.549 57.895 16.61 10.10 42.63 5.19
293 301 3.177228 ACTATGGACAGGAGAAGCTTGT 58.823 45.455 2.10 0.00 39.84 3.16
294 302 3.902881 ACTATGGACAGGAGAAGCTTG 57.097 47.619 2.10 0.00 0.00 4.01
296 304 4.566488 CCAAAACTATGGACAGGAGAAGCT 60.566 45.833 0.00 0.00 43.54 3.74
298 306 3.691609 GCCAAAACTATGGACAGGAGAAG 59.308 47.826 0.00 0.00 43.54 2.85
300 308 2.912956 AGCCAAAACTATGGACAGGAGA 59.087 45.455 0.00 0.00 43.54 3.71
306 314 3.255642 TGCAGAAAGCCAAAACTATGGAC 59.744 43.478 0.00 0.00 43.54 4.02
310 318 4.813027 CATGTGCAGAAAGCCAAAACTAT 58.187 39.130 0.00 0.00 44.83 2.12
327 335 5.122869 AGTTTCATACAGTAGCAAGCATGTG 59.877 40.000 0.00 0.00 0.00 3.21
340 348 8.827177 TCAACACCTAGTTTAGTTTCATACAG 57.173 34.615 0.00 0.00 38.74 2.74
342 350 9.654663 AGATCAACACCTAGTTTAGTTTCATAC 57.345 33.333 0.00 0.00 38.74 2.39
352 360 6.205658 GCTTGAAGAAGATCAACACCTAGTTT 59.794 38.462 0.00 0.00 38.74 2.66
357 365 4.363991 AGCTTGAAGAAGATCAACACCT 57.636 40.909 0.00 0.00 35.55 4.00
359 367 4.094146 GGCTAGCTTGAAGAAGATCAACAC 59.906 45.833 15.72 0.00 35.55 3.32
360 368 4.019860 AGGCTAGCTTGAAGAAGATCAACA 60.020 41.667 15.72 0.00 35.55 3.33
361 369 4.512484 AGGCTAGCTTGAAGAAGATCAAC 58.488 43.478 15.72 0.00 35.55 3.18
362 370 4.223700 TGAGGCTAGCTTGAAGAAGATCAA 59.776 41.667 15.72 0.00 37.70 2.57
363 371 3.771479 TGAGGCTAGCTTGAAGAAGATCA 59.229 43.478 15.72 0.00 0.00 2.92
364 372 4.099266 TCTGAGGCTAGCTTGAAGAAGATC 59.901 45.833 15.72 0.00 0.00 2.75
365 373 4.029520 TCTGAGGCTAGCTTGAAGAAGAT 58.970 43.478 15.72 0.00 0.00 2.40
366 374 3.435275 TCTGAGGCTAGCTTGAAGAAGA 58.565 45.455 15.72 5.79 0.00 2.87
367 375 3.195396 ACTCTGAGGCTAGCTTGAAGAAG 59.805 47.826 15.72 8.72 0.00 2.85
368 376 3.169099 ACTCTGAGGCTAGCTTGAAGAA 58.831 45.455 15.72 0.00 0.00 2.52
370 378 3.260740 CAACTCTGAGGCTAGCTTGAAG 58.739 50.000 15.72 7.22 0.00 3.02
371 379 2.634940 ACAACTCTGAGGCTAGCTTGAA 59.365 45.455 15.72 0.00 0.00 2.69
372 380 2.251818 ACAACTCTGAGGCTAGCTTGA 58.748 47.619 15.72 0.00 0.00 3.02
373 381 2.758736 ACAACTCTGAGGCTAGCTTG 57.241 50.000 15.72 11.54 0.00 4.01
374 382 2.903135 AGAACAACTCTGAGGCTAGCTT 59.097 45.455 15.72 6.94 31.12 3.74
375 383 2.534990 AGAACAACTCTGAGGCTAGCT 58.465 47.619 15.72 0.00 31.12 3.32
376 384 4.664150 ATAGAACAACTCTGAGGCTAGC 57.336 45.455 6.04 6.04 35.41 3.42
377 385 5.278758 GGCTATAGAACAACTCTGAGGCTAG 60.279 48.000 9.85 0.00 39.26 3.42
378 386 4.585162 GGCTATAGAACAACTCTGAGGCTA 59.415 45.833 9.85 3.35 39.26 3.93
379 387 3.386402 GGCTATAGAACAACTCTGAGGCT 59.614 47.826 9.85 0.00 39.26 4.58
380 388 3.386402 AGGCTATAGAACAACTCTGAGGC 59.614 47.826 9.85 0.00 41.06 4.70
381 389 4.739137 GCAGGCTATAGAACAACTCTGAGG 60.739 50.000 9.85 0.00 35.41 3.86
382 390 4.142071 TGCAGGCTATAGAACAACTCTGAG 60.142 45.833 3.21 2.45 35.41 3.35
383 391 3.769300 TGCAGGCTATAGAACAACTCTGA 59.231 43.478 3.21 0.00 35.41 3.27
414 422 1.815421 CACACTAGCGGGGATGTGC 60.815 63.158 0.00 0.00 36.36 4.57
424 432 2.815647 GTGAGGCCGCACACTAGC 60.816 66.667 31.80 5.73 38.63 3.42
427 435 4.235762 AACGTGAGGCCGCACACT 62.236 61.111 34.38 20.30 38.69 3.55
450 458 4.093952 CTGCCTCAAGCCGTTGCG 62.094 66.667 0.00 0.00 44.33 4.85
451 459 2.669569 TCTGCCTCAAGCCGTTGC 60.670 61.111 0.00 0.00 42.71 4.17
478 487 2.911484 GAGGCAAAGACATTCCTCGAT 58.089 47.619 0.00 0.00 36.18 3.59
486 495 4.002906 TGTTCTAACGAGGCAAAGACAT 57.997 40.909 0.00 0.00 0.00 3.06
487 496 3.462483 TGTTCTAACGAGGCAAAGACA 57.538 42.857 0.00 0.00 0.00 3.41
488 497 4.806342 TTTGTTCTAACGAGGCAAAGAC 57.194 40.909 0.00 0.00 0.00 3.01
489 498 5.049680 GTCATTTGTTCTAACGAGGCAAAGA 60.050 40.000 0.00 0.00 34.16 2.52
490 499 5.147162 GTCATTTGTTCTAACGAGGCAAAG 58.853 41.667 0.00 0.00 34.16 2.77
491 500 4.023536 GGTCATTTGTTCTAACGAGGCAAA 60.024 41.667 0.00 0.00 34.71 3.68
492 501 3.500680 GGTCATTTGTTCTAACGAGGCAA 59.499 43.478 0.00 0.00 0.00 4.52
493 502 3.071479 GGTCATTTGTTCTAACGAGGCA 58.929 45.455 0.00 0.00 0.00 4.75
494 503 2.418976 GGGTCATTTGTTCTAACGAGGC 59.581 50.000 0.00 0.00 0.00 4.70
495 504 3.939066 AGGGTCATTTGTTCTAACGAGG 58.061 45.455 0.00 0.00 0.00 4.63
496 505 4.392138 GGAAGGGTCATTTGTTCTAACGAG 59.608 45.833 0.00 0.00 0.00 4.18
497 506 4.041198 AGGAAGGGTCATTTGTTCTAACGA 59.959 41.667 0.00 0.00 0.00 3.85
498 507 4.324267 AGGAAGGGTCATTTGTTCTAACG 58.676 43.478 0.00 0.00 0.00 3.18
499 508 6.235664 TGTAGGAAGGGTCATTTGTTCTAAC 58.764 40.000 0.00 0.00 0.00 2.34
500 509 6.442541 TGTAGGAAGGGTCATTTGTTCTAA 57.557 37.500 0.00 0.00 0.00 2.10
501 510 5.570844 GCTGTAGGAAGGGTCATTTGTTCTA 60.571 44.000 0.00 0.00 0.00 2.10
502 511 4.807643 GCTGTAGGAAGGGTCATTTGTTCT 60.808 45.833 0.00 0.00 0.00 3.01
503 512 3.440522 GCTGTAGGAAGGGTCATTTGTTC 59.559 47.826 0.00 0.00 0.00 3.18
504 513 3.421844 GCTGTAGGAAGGGTCATTTGTT 58.578 45.455 0.00 0.00 0.00 2.83
505 514 2.615493 CGCTGTAGGAAGGGTCATTTGT 60.615 50.000 0.00 0.00 0.00 2.83
506 515 2.009774 CGCTGTAGGAAGGGTCATTTG 58.990 52.381 0.00 0.00 0.00 2.32
507 516 1.065418 CCGCTGTAGGAAGGGTCATTT 60.065 52.381 0.00 0.00 0.00 2.32
508 517 0.541863 CCGCTGTAGGAAGGGTCATT 59.458 55.000 0.00 0.00 0.00 2.57
509 518 1.338136 CCCGCTGTAGGAAGGGTCAT 61.338 60.000 0.00 0.00 39.05 3.06
510 519 1.987855 CCCGCTGTAGGAAGGGTCA 60.988 63.158 0.00 0.00 39.05 4.02
511 520 1.049289 ATCCCGCTGTAGGAAGGGTC 61.049 60.000 0.00 0.00 44.13 4.46
512 521 1.003051 ATCCCGCTGTAGGAAGGGT 59.997 57.895 0.00 0.00 44.13 4.34
513 522 1.447643 CATCCCGCTGTAGGAAGGG 59.552 63.158 0.00 0.00 45.10 3.95
514 523 1.447643 CCATCCCGCTGTAGGAAGG 59.552 63.158 0.00 0.00 36.85 3.46
515 524 1.447643 CCCATCCCGCTGTAGGAAG 59.552 63.158 0.00 0.00 36.85 3.46
516 525 2.070039 CCCCATCCCGCTGTAGGAA 61.070 63.158 0.00 0.00 36.85 3.36
517 526 2.445845 CCCCATCCCGCTGTAGGA 60.446 66.667 0.00 0.00 37.93 2.94
518 527 2.445845 TCCCCATCCCGCTGTAGG 60.446 66.667 0.00 0.00 0.00 3.18
519 528 2.822399 GTCCCCATCCCGCTGTAG 59.178 66.667 0.00 0.00 0.00 2.74
520 529 3.151710 CGTCCCCATCCCGCTGTA 61.152 66.667 0.00 0.00 0.00 2.74
522 531 4.227134 CTCGTCCCCATCCCGCTG 62.227 72.222 0.00 0.00 0.00 5.18
525 534 4.227134 CTGCTCGTCCCCATCCCG 62.227 72.222 0.00 0.00 0.00 5.14
526 535 3.866582 CCTGCTCGTCCCCATCCC 61.867 72.222 0.00 0.00 0.00 3.85
527 536 4.554036 GCCTGCTCGTCCCCATCC 62.554 72.222 0.00 0.00 0.00 3.51
533 542 1.435515 CTAGTCAGCCTGCTCGTCC 59.564 63.158 0.00 0.00 0.00 4.79
564 573 1.268794 CCTTAGCAGTCATCCTCGTCG 60.269 57.143 0.00 0.00 0.00 5.12
565 574 1.537135 GCCTTAGCAGTCATCCTCGTC 60.537 57.143 0.00 0.00 39.53 4.20
570 579 1.009829 CAACGCCTTAGCAGTCATCC 58.990 55.000 0.00 0.00 39.83 3.51
573 582 0.320421 GGACAACGCCTTAGCAGTCA 60.320 55.000 0.00 0.00 39.83 3.41
577 586 0.613260 ATGAGGACAACGCCTTAGCA 59.387 50.000 0.00 0.00 38.73 3.49
578 587 1.291132 GATGAGGACAACGCCTTAGC 58.709 55.000 0.00 0.00 38.73 3.09
609 624 1.511464 CACTAGCGTGGACGTCGTC 60.511 63.158 17.16 17.16 42.22 4.20
619 634 4.202264 CCATTCCTTCTTATCCACTAGCGT 60.202 45.833 0.00 0.00 0.00 5.07
648 663 2.122167 TTGCACCGGACCAAACCAC 61.122 57.895 9.46 0.00 0.00 4.16
737 752 5.417266 TGAGTGGTTTTGTTTCTGATTGTCA 59.583 36.000 0.00 0.00 0.00 3.58
740 755 6.563422 TCTTGAGTGGTTTTGTTTCTGATTG 58.437 36.000 0.00 0.00 0.00 2.67
742 757 6.773976 TTCTTGAGTGGTTTTGTTTCTGAT 57.226 33.333 0.00 0.00 0.00 2.90
773 789 9.083080 CCAAAATTCTCAAAACCGGATAAATAC 57.917 33.333 9.46 0.00 0.00 1.89
774 790 8.254508 CCCAAAATTCTCAAAACCGGATAAATA 58.745 33.333 9.46 0.00 0.00 1.40
827 868 0.110486 GACTTCAGGCCCAAGGACAA 59.890 55.000 15.00 0.00 29.21 3.18
832 873 1.073722 TGCAGACTTCAGGCCCAAG 59.926 57.895 10.01 10.01 0.00 3.61
851 892 1.067635 GGCCCAAGTGTAAGTTGCATG 60.068 52.381 0.00 0.00 45.85 4.06
852 893 1.256812 GGCCCAAGTGTAAGTTGCAT 58.743 50.000 0.00 0.00 45.85 3.96
853 894 1.169661 CGGCCCAAGTGTAAGTTGCA 61.170 55.000 0.00 0.00 45.85 4.08
915 963 0.688087 GAAGGGAGACGAGTGGGGAT 60.688 60.000 0.00 0.00 0.00 3.85
927 975 2.395353 GGGGATTGGGGGAAGGGAG 61.395 68.421 0.00 0.00 0.00 4.30
928 976 2.287661 GGGGATTGGGGGAAGGGA 60.288 66.667 0.00 0.00 0.00 4.20
930 978 2.620137 TGGGGGATTGGGGGAAGG 60.620 66.667 0.00 0.00 0.00 3.46
931 979 1.935931 AGTGGGGGATTGGGGGAAG 60.936 63.158 0.00 0.00 0.00 3.46
932 980 1.933812 GAGTGGGGGATTGGGGGAA 60.934 63.158 0.00 0.00 0.00 3.97
958 1013 2.927580 GCGACTGGGTTCGGTCTCA 61.928 63.158 4.19 0.00 44.88 3.27
1432 1488 4.403585 TGAAGATGAGCAGAAGAGATGG 57.596 45.455 0.00 0.00 0.00 3.51
1477 1534 2.815647 GCCAGAAAGGACGGAGCG 60.816 66.667 0.00 0.00 41.22 5.03
1617 1674 3.027412 TGCCCAACTTCACAAAAGCTTA 58.973 40.909 0.00 0.00 0.00 3.09
1618 1675 1.830477 TGCCCAACTTCACAAAAGCTT 59.170 42.857 0.00 0.00 0.00 3.74
1628 1692 1.377536 GCAGAGAGATGCCCAACTTC 58.622 55.000 0.00 0.00 40.43 3.01
1636 1700 6.374565 AAAATATTGTGAGCAGAGAGATGC 57.625 37.500 0.00 0.00 46.88 3.91
1638 1702 8.045507 TGAGAAAAATATTGTGAGCAGAGAGAT 58.954 33.333 0.00 0.00 0.00 2.75
1644 1708 5.798934 GCAGTGAGAAAAATATTGTGAGCAG 59.201 40.000 0.00 0.00 0.00 4.24
1674 1745 5.321927 GTTCCTGGAAAGGAGTTGGATTAA 58.678 41.667 11.40 0.00 39.43 1.40
1708 1779 2.907892 ACTTCCTTCTCTGGGTCATCA 58.092 47.619 0.00 0.00 0.00 3.07
1711 1782 3.578716 CACTTACTTCCTTCTCTGGGTCA 59.421 47.826 0.00 0.00 0.00 4.02
1729 1800 5.680619 TGAAACATGTGTTACCTCTCACTT 58.319 37.500 0.00 0.00 37.25 3.16
1826 1898 5.740290 ATAGGTAACCTGGTCCATAATCG 57.260 43.478 0.00 0.00 34.61 3.34
1975 2047 7.121168 GGAACATCTGATTGTTTGGATGAAGTA 59.879 37.037 8.48 0.00 39.85 2.24
2159 2232 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2160 2233 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2161 2234 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2162 2235 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2163 2236 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2164 2237 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2165 2238 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2176 2249 9.923143 TCGTTGAAATCTCTAGAAAGACAAATA 57.077 29.630 0.00 0.00 0.00 1.40
2177 2250 8.833231 TCGTTGAAATCTCTAGAAAGACAAAT 57.167 30.769 0.00 0.00 0.00 2.32
2178 2251 7.926555 ACTCGTTGAAATCTCTAGAAAGACAAA 59.073 33.333 0.00 0.00 0.00 2.83
2179 2252 7.434492 ACTCGTTGAAATCTCTAGAAAGACAA 58.566 34.615 0.00 0.00 0.00 3.18
2180 2253 6.982852 ACTCGTTGAAATCTCTAGAAAGACA 58.017 36.000 0.00 0.00 0.00 3.41
2181 2254 7.876896 AACTCGTTGAAATCTCTAGAAAGAC 57.123 36.000 0.00 0.00 0.00 3.01
2182 2255 8.794553 AGTAACTCGTTGAAATCTCTAGAAAGA 58.205 33.333 0.00 0.00 0.00 2.52
2183 2256 8.973835 AGTAACTCGTTGAAATCTCTAGAAAG 57.026 34.615 0.00 0.00 0.00 2.62
2184 2257 9.837525 GTAGTAACTCGTTGAAATCTCTAGAAA 57.162 33.333 0.00 0.00 0.00 2.52
2185 2258 9.006839 TGTAGTAACTCGTTGAAATCTCTAGAA 57.993 33.333 0.00 0.00 0.00 2.10
2186 2259 8.557592 TGTAGTAACTCGTTGAAATCTCTAGA 57.442 34.615 0.00 0.00 0.00 2.43
2189 2262 8.737175 TGTATGTAGTAACTCGTTGAAATCTCT 58.263 33.333 0.00 0.00 0.00 3.10
2190 2263 8.906636 TGTATGTAGTAACTCGTTGAAATCTC 57.093 34.615 0.00 0.00 0.00 2.75
2191 2264 9.701098 TTTGTATGTAGTAACTCGTTGAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
2192 2265 9.953825 CTTTGTATGTAGTAACTCGTTGAAATC 57.046 33.333 0.00 0.00 0.00 2.17
2193 2266 8.440833 GCTTTGTATGTAGTAACTCGTTGAAAT 58.559 33.333 0.00 0.00 0.00 2.17
2194 2267 7.438757 TGCTTTGTATGTAGTAACTCGTTGAAA 59.561 33.333 0.00 0.00 0.00 2.69
2195 2268 6.924612 TGCTTTGTATGTAGTAACTCGTTGAA 59.075 34.615 0.00 0.00 0.00 2.69
2196 2269 6.448852 TGCTTTGTATGTAGTAACTCGTTGA 58.551 36.000 0.00 0.00 0.00 3.18
2197 2270 6.699895 TGCTTTGTATGTAGTAACTCGTTG 57.300 37.500 0.00 0.00 0.00 4.10
2198 2271 7.718272 TTTGCTTTGTATGTAGTAACTCGTT 57.282 32.000 0.00 0.00 0.00 3.85
2199 2272 7.718272 TTTTGCTTTGTATGTAGTAACTCGT 57.282 32.000 0.00 0.00 0.00 4.18
2200 2273 8.227791 ACATTTTGCTTTGTATGTAGTAACTCG 58.772 33.333 0.00 0.00 29.93 4.18
2201 2274 9.329913 CACATTTTGCTTTGTATGTAGTAACTC 57.670 33.333 0.00 0.00 30.53 3.01
2202 2275 8.846211 ACACATTTTGCTTTGTATGTAGTAACT 58.154 29.630 0.00 0.00 30.53 2.24
2203 2276 8.901748 CACACATTTTGCTTTGTATGTAGTAAC 58.098 33.333 0.00 0.00 30.53 2.50
2204 2277 8.841300 TCACACATTTTGCTTTGTATGTAGTAA 58.159 29.630 0.00 0.00 30.53 2.24
2205 2278 8.384607 TCACACATTTTGCTTTGTATGTAGTA 57.615 30.769 0.00 0.00 30.53 1.82
2206 2279 7.270757 TCACACATTTTGCTTTGTATGTAGT 57.729 32.000 0.00 0.00 30.53 2.73
2207 2280 8.746922 ATTCACACATTTTGCTTTGTATGTAG 57.253 30.769 0.00 0.00 30.53 2.74
2208 2281 8.575589 AGATTCACACATTTTGCTTTGTATGTA 58.424 29.630 0.00 0.00 30.53 2.29
2209 2282 7.436118 AGATTCACACATTTTGCTTTGTATGT 58.564 30.769 0.00 0.00 0.00 2.29
2210 2283 7.878477 AGATTCACACATTTTGCTTTGTATG 57.122 32.000 0.00 0.00 0.00 2.39
2211 2284 8.575589 TGTAGATTCACACATTTTGCTTTGTAT 58.424 29.630 0.00 0.00 0.00 2.29
2212 2285 7.860373 GTGTAGATTCACACATTTTGCTTTGTA 59.140 33.333 11.87 0.00 46.55 2.41
2213 2286 6.697019 GTGTAGATTCACACATTTTGCTTTGT 59.303 34.615 11.87 0.00 46.55 2.83
2214 2287 7.097342 GTGTAGATTCACACATTTTGCTTTG 57.903 36.000 11.87 0.00 46.55 2.77
2255 2328 8.826710 CAAATGAACTACCACATACGAATGTAT 58.173 33.333 0.00 0.00 44.70 2.29
2256 2329 8.035984 TCAAATGAACTACCACATACGAATGTA 58.964 33.333 0.00 0.00 44.70 2.29
2258 2331 7.302350 TCAAATGAACTACCACATACGAATG 57.698 36.000 0.00 0.00 39.17 2.67
2259 2332 7.915293 TTCAAATGAACTACCACATACGAAT 57.085 32.000 0.00 0.00 0.00 3.34
2260 2333 7.731882 TTTCAAATGAACTACCACATACGAA 57.268 32.000 0.00 0.00 33.13 3.85
2261 2334 7.389330 ACATTTCAAATGAACTACCACATACGA 59.611 33.333 17.30 0.00 33.13 3.43
2262 2335 7.526608 ACATTTCAAATGAACTACCACATACG 58.473 34.615 17.30 0.00 33.13 3.06
2263 2336 8.730680 AGACATTTCAAATGAACTACCACATAC 58.269 33.333 17.30 0.00 33.13 2.39
2264 2337 8.862325 AGACATTTCAAATGAACTACCACATA 57.138 30.769 17.30 0.00 33.13 2.29
2265 2338 7.765695 AGACATTTCAAATGAACTACCACAT 57.234 32.000 17.30 0.00 33.13 3.21
2266 2339 8.154203 TCTAGACATTTCAAATGAACTACCACA 58.846 33.333 17.30 0.66 33.13 4.17
2267 2340 8.547967 TCTAGACATTTCAAATGAACTACCAC 57.452 34.615 17.30 0.00 33.13 4.16
2268 2341 9.567776 TTTCTAGACATTTCAAATGAACTACCA 57.432 29.630 17.30 5.05 33.13 3.25
2287 2360 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
2288 2361 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2289 2362 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2290 2363 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2291 2364 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2292 2365 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2293 2366 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2294 2367 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2295 2368 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2296 2369 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2297 2370 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
2298 2371 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
2299 2372 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
2300 2373 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2301 2374 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2302 2375 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2303 2376 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2304 2377 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2305 2378 1.002069 TACTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2306 2379 2.378378 ATACTACTCCCTCCGTTCCC 57.622 55.000 0.00 0.00 0.00 3.97
2307 2380 3.294214 TGAATACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2308 2381 3.318557 CCTGAATACTACTCCCTCCGTTC 59.681 52.174 0.00 0.00 0.00 3.95
2309 2382 3.297736 CCTGAATACTACTCCCTCCGTT 58.702 50.000 0.00 0.00 0.00 4.44
2310 2383 2.424523 CCCTGAATACTACTCCCTCCGT 60.425 54.545 0.00 0.00 0.00 4.69
2311 2384 2.158505 TCCCTGAATACTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
2312 2385 3.232662 GTCCCTGAATACTACTCCCTCC 58.767 54.545 0.00 0.00 0.00 4.30
2313 2386 3.912248 TGTCCCTGAATACTACTCCCTC 58.088 50.000 0.00 0.00 0.00 4.30
2314 2387 4.031611 GTTGTCCCTGAATACTACTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
2315 2388 3.773119 TGTTGTCCCTGAATACTACTCCC 59.227 47.826 0.00 0.00 0.00 4.30
2316 2389 4.710375 TCTGTTGTCCCTGAATACTACTCC 59.290 45.833 0.00 0.00 0.00 3.85
2317 2390 5.916661 TCTGTTGTCCCTGAATACTACTC 57.083 43.478 0.00 0.00 0.00 2.59
2318 2391 6.670027 AGATTCTGTTGTCCCTGAATACTACT 59.330 38.462 0.00 0.00 34.40 2.57
2319 2392 6.879400 AGATTCTGTTGTCCCTGAATACTAC 58.121 40.000 0.00 0.00 34.40 2.73
2320 2393 7.038302 ACAAGATTCTGTTGTCCCTGAATACTA 60.038 37.037 0.00 0.00 32.53 1.82
2321 2394 6.176183 CAAGATTCTGTTGTCCCTGAATACT 58.824 40.000 0.00 0.00 34.40 2.12
2377 2452 7.970614 GCAGTATAAAAGAGGGAAAACAATCAG 59.029 37.037 0.00 0.00 0.00 2.90
2494 2571 0.467290 TGGGAAAGGCACAGTGAACC 60.467 55.000 4.15 0.00 0.00 3.62
2499 2576 2.683211 ATCTTTGGGAAAGGCACAGT 57.317 45.000 0.00 0.00 39.01 3.55
2500 2577 4.766891 TCTTTATCTTTGGGAAAGGCACAG 59.233 41.667 0.00 0.00 39.01 3.66
2778 2855 1.029681 TCAGCACGCGTAGGATACAT 58.970 50.000 13.44 0.00 43.24 2.29
2822 2899 0.613260 TTCCAGACGTGATTCCCCTG 59.387 55.000 0.00 0.00 0.00 4.45
2900 2977 5.769662 TGTACAGCACCAAAGAGAAATCAAT 59.230 36.000 0.00 0.00 0.00 2.57
2904 2981 6.655078 AAATGTACAGCACCAAAGAGAAAT 57.345 33.333 0.33 0.00 0.00 2.17
3067 3144 5.070001 TCACATACAAGGGAAAAGGAACAG 58.930 41.667 0.00 0.00 0.00 3.16
3170 3251 1.753956 CACTGTAAAAACACGCAGCC 58.246 50.000 0.00 0.00 32.65 4.85
3196 3277 1.671901 AAACAAACCACCACCAGCCG 61.672 55.000 0.00 0.00 0.00 5.52
3199 3280 4.808364 CACAATAAAACAAACCACCACCAG 59.192 41.667 0.00 0.00 0.00 4.00
3231 3312 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3232 3313 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3233 3314 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3234 3315 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3235 3316 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3236 3317 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3237 3318 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3238 3319 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3239 3320 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
3240 3321 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
3241 3322 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
3242 3323 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
3243 3324 6.555463 ATTTCTAGGACAAGTATTTCCGGA 57.445 37.500 0.00 0.00 36.95 5.14
3244 3325 6.821665 TCAATTTCTAGGACAAGTATTTCCGG 59.178 38.462 0.00 0.00 36.95 5.14
3245 3326 7.843490 TCAATTTCTAGGACAAGTATTTCCG 57.157 36.000 0.00 0.00 36.95 4.30
3295 3376 9.838339 CCTCAAAATGGTTGTATCTAGACTTAT 57.162 33.333 0.00 0.00 0.00 1.73
3296 3377 9.042450 TCCTCAAAATGGTTGTATCTAGACTTA 57.958 33.333 0.00 0.00 0.00 2.24
3297 3378 7.824779 GTCCTCAAAATGGTTGTATCTAGACTT 59.175 37.037 0.00 0.00 0.00 3.01
3298 3379 7.038302 TGTCCTCAAAATGGTTGTATCTAGACT 60.038 37.037 0.00 0.00 0.00 3.24
3299 3380 7.103641 TGTCCTCAAAATGGTTGTATCTAGAC 58.896 38.462 0.00 0.00 0.00 2.59
3300 3381 7.252612 TGTCCTCAAAATGGTTGTATCTAGA 57.747 36.000 0.00 0.00 0.00 2.43
3301 3382 7.607991 ACTTGTCCTCAAAATGGTTGTATCTAG 59.392 37.037 0.00 0.00 32.87 2.43
3302 3383 7.458397 ACTTGTCCTCAAAATGGTTGTATCTA 58.542 34.615 0.00 0.00 32.87 1.98
3303 3384 6.306987 ACTTGTCCTCAAAATGGTTGTATCT 58.693 36.000 0.00 0.00 32.87 1.98
3304 3385 6.575162 ACTTGTCCTCAAAATGGTTGTATC 57.425 37.500 0.00 0.00 32.87 2.24
3305 3386 8.650143 AATACTTGTCCTCAAAATGGTTGTAT 57.350 30.769 0.00 0.00 32.87 2.29
3306 3387 8.472007 AAATACTTGTCCTCAAAATGGTTGTA 57.528 30.769 0.00 0.00 32.87 2.41
3307 3388 6.976934 AATACTTGTCCTCAAAATGGTTGT 57.023 33.333 0.00 0.00 32.87 3.32
3308 3389 6.868339 GGAAATACTTGTCCTCAAAATGGTTG 59.132 38.462 0.00 0.00 32.87 3.77
3309 3390 6.294508 CGGAAATACTTGTCCTCAAAATGGTT 60.295 38.462 0.00 0.00 32.87 3.67
3310 3391 5.183140 CGGAAATACTTGTCCTCAAAATGGT 59.817 40.000 0.00 0.00 32.87 3.55
3311 3392 5.393027 CCGGAAATACTTGTCCTCAAAATGG 60.393 44.000 0.00 0.00 32.87 3.16
3312 3393 5.414454 TCCGGAAATACTTGTCCTCAAAATG 59.586 40.000 0.00 0.00 32.87 2.32
3313 3394 5.414765 GTCCGGAAATACTTGTCCTCAAAAT 59.585 40.000 5.23 0.00 32.87 1.82
3314 3395 4.758165 GTCCGGAAATACTTGTCCTCAAAA 59.242 41.667 5.23 0.00 32.87 2.44
3315 3396 4.320870 GTCCGGAAATACTTGTCCTCAAA 58.679 43.478 5.23 0.00 32.87 2.69
3316 3397 3.615592 CGTCCGGAAATACTTGTCCTCAA 60.616 47.826 5.23 0.00 0.00 3.02
3317 3398 2.094390 CGTCCGGAAATACTTGTCCTCA 60.094 50.000 5.23 0.00 0.00 3.86
3318 3399 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
3319 3400 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
3320 3401 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
3321 3402 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3322 3403 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3323 3404 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3324 3405 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3325 3406 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3326 3407 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3327 3408 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3328 3409 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3329 3410 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3330 3411 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
3331 3412 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
3332 3413 0.179009 TACATACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3333 3414 1.906990 ATACATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
3366 3447 9.642343 ACACTCTCTAACCAACAGACATATATA 57.358 33.333 0.00 0.00 0.00 0.86
3367 3448 8.540507 ACACTCTCTAACCAACAGACATATAT 57.459 34.615 0.00 0.00 0.00 0.86
3368 3449 7.614192 TGACACTCTCTAACCAACAGACATATA 59.386 37.037 0.00 0.00 0.00 0.86
3369 3450 6.437477 TGACACTCTCTAACCAACAGACATAT 59.563 38.462 0.00 0.00 0.00 1.78
3370 3451 5.773176 TGACACTCTCTAACCAACAGACATA 59.227 40.000 0.00 0.00 0.00 2.29
3371 3452 4.588951 TGACACTCTCTAACCAACAGACAT 59.411 41.667 0.00 0.00 0.00 3.06
3410 3491 6.913873 AATTCAGGCAATGCAATTTGTATC 57.086 33.333 7.79 0.00 31.22 2.24
3519 3608 5.282055 TGAGCGACAAGAAATATGGATCT 57.718 39.130 0.00 0.00 0.00 2.75
3530 3619 1.202758 ACACCCATTTGAGCGACAAGA 60.203 47.619 0.00 0.00 39.77 3.02
3582 3671 6.604735 ATCCATATTACTTGTCGCTCAAAC 57.395 37.500 0.00 0.00 35.48 2.93
3689 3778 2.100197 TGGAGACATAACCCACTCTCG 58.900 52.381 0.00 0.00 33.40 4.04
3792 3883 3.505680 TGATCTTAAACGCTGCCATTGTT 59.494 39.130 0.00 0.00 0.00 2.83
3904 3997 5.163683 GCATGTTGCAAGTCTACATTCAGAT 60.164 40.000 0.00 0.00 44.26 2.90
3974 4071 1.485066 GTTGGGCCTCTTCTTATCCGA 59.515 52.381 4.53 0.00 0.00 4.55
4060 4157 2.209838 TTGGCGATCTTGACTCGATC 57.790 50.000 0.00 0.00 38.38 3.69
4246 4343 0.839277 CCAGTCCCCATGCTATCACA 59.161 55.000 0.00 0.00 0.00 3.58
4305 4402 7.432869 AGCATCTCTACTGTTTCTAATGCTAG 58.567 38.462 12.54 0.00 44.81 3.42
4329 4435 4.845580 AAGCGGCGGCATCAGGAG 62.846 66.667 19.21 0.00 43.41 3.69
4528 4660 8.027189 TGGATACTTGCAGATTATATGTACGAC 58.973 37.037 0.00 0.00 37.61 4.34
4603 4772 3.243873 CCATGTGAGTAGTGGCGTATCAT 60.244 47.826 0.00 0.00 0.00 2.45
4620 4789 1.812686 CTTGCTGCTTGGCACCATGT 61.813 55.000 0.00 0.00 42.27 3.21
4628 4797 1.888215 TGTTCTCTCTTGCTGCTTGG 58.112 50.000 0.00 0.00 0.00 3.61
4629 4798 3.136763 TCTTGTTCTCTCTTGCTGCTTG 58.863 45.455 0.00 0.00 0.00 4.01
4652 4821 1.213537 CCATGGAAAGTGCAAGCGG 59.786 57.895 5.56 0.00 0.00 5.52
4653 4822 1.444895 GCCATGGAAAGTGCAAGCG 60.445 57.895 18.40 0.00 0.00 4.68
4685 4854 1.554160 CAGGTGTTGGAGATGAGCTCT 59.446 52.381 16.19 0.00 43.43 4.09
4695 4864 2.297701 GCTTTCAGAACAGGTGTTGGA 58.702 47.619 0.00 0.00 38.56 3.53
4729 4898 0.106819 ATCCAACAGCTCCAGGATGC 60.107 55.000 9.03 0.00 39.32 3.91
4748 4917 1.200716 GTCATCAGACCACCGACGTTA 59.799 52.381 0.00 0.00 38.89 3.18
4762 4931 4.881273 GGGTATTGTGCACAATAGTCATCA 59.119 41.667 39.58 23.78 46.05 3.07
4769 4938 4.457603 GTGTTGAGGGTATTGTGCACAATA 59.542 41.667 36.85 36.85 44.09 1.90
4813 4982 2.679837 CTGTGTGGAATGGTGATAGCAC 59.320 50.000 1.50 1.50 44.39 4.40
4824 4993 0.405585 CACCTTCCCCTGTGTGGAAT 59.594 55.000 0.00 0.00 40.94 3.01
4860 5098 4.796038 TTTTAAGACGGAGGGAGTACTG 57.204 45.455 0.00 0.00 0.00 2.74
4867 5105 4.565564 CGACACTTATTTTAAGACGGAGGG 59.434 45.833 1.47 0.00 0.00 4.30
4941 5179 1.212751 GACTTTGGTGCGCCATTCC 59.787 57.895 21.95 6.29 45.56 3.01
5003 5241 5.186996 ACCATCAGTTGCTTAGTTTTGTG 57.813 39.130 0.00 0.00 0.00 3.33
5027 5265 2.352617 GGTGATCAAAATGCTGCGGAAA 60.353 45.455 0.00 0.00 0.00 3.13
5072 5310 1.374758 GTCTCCCAAGCGACAGTGG 60.375 63.158 0.00 0.00 34.44 4.00
5129 5367 2.327343 TGGATGTGCAAGCTCGTGC 61.327 57.895 3.32 3.32 45.15 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.