Multiple sequence alignment - TraesCS7B01G227800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G227800 chr7B 100.000 3470 0 0 1 3470 428038409 428041878 0.000000e+00 6408
1 TraesCS7B01G227800 chr7A 92.702 1795 80 19 212 1982 475588660 475590427 0.000000e+00 2542
2 TraesCS7B01G227800 chr7A 87.954 523 36 14 2019 2537 475590426 475590925 2.980000e-165 592
3 TraesCS7B01G227800 chr7A 91.981 212 16 1 1 212 4994627 4994417 2.620000e-76 296
4 TraesCS7B01G227800 chr7D 91.635 1817 82 25 212 1982 413659121 413660913 0.000000e+00 2449
5 TraesCS7B01G227800 chr7D 85.929 533 36 18 2019 2537 413660912 413661419 1.830000e-147 532
6 TraesCS7B01G227800 chr1B 92.511 948 68 3 2523 3469 606588748 606587803 0.000000e+00 1354
7 TraesCS7B01G227800 chr5B 92.184 934 72 1 2534 3467 15683628 15684560 0.000000e+00 1319
8 TraesCS7B01G227800 chr6B 91.970 934 74 1 2537 3470 134212772 134213704 0.000000e+00 1308
9 TraesCS7B01G227800 chr6B 90.160 935 86 4 2540 3470 12039873 12038941 0.000000e+00 1212
10 TraesCS7B01G227800 chr6B 97.170 212 5 1 1 212 538163706 538163496 1.180000e-94 357
11 TraesCS7B01G227800 chr6B 91.038 212 17 2 1 212 125168735 125168944 5.670000e-73 285
12 TraesCS7B01G227800 chr3B 89.894 940 91 2 2535 3470 715943178 715942239 0.000000e+00 1206
13 TraesCS7B01G227800 chr3B 89.267 941 93 6 2537 3470 807153823 807154762 0.000000e+00 1171
14 TraesCS7B01G227800 chr3B 97.170 212 5 1 1 212 712108914 712108704 1.180000e-94 357
15 TraesCS7B01G227800 chr2B 89.232 938 97 2 2537 3470 167534539 167533602 0.000000e+00 1170
16 TraesCS7B01G227800 chr4D 88.641 942 101 4 2534 3470 57014701 57015641 0.000000e+00 1142
17 TraesCS7B01G227800 chr3D 88.523 941 98 7 2537 3470 2489507 2490444 0.000000e+00 1131
18 TraesCS7B01G227800 chr4B 98.113 212 3 1 1 212 2433438 2433648 5.470000e-98 368
19 TraesCS7B01G227800 chr4B 96.226 212 7 1 1 212 476866507 476866717 2.560000e-91 346
20 TraesCS7B01G227800 chr5A 97.170 212 5 1 1 212 237486961 237486751 1.180000e-94 357
21 TraesCS7B01G227800 chr2A 97.170 212 5 1 1 212 125615914 125615704 1.180000e-94 357
22 TraesCS7B01G227800 chr1A 97.170 212 5 1 1 212 31122778 31122988 1.180000e-94 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G227800 chr7B 428038409 428041878 3469 False 6408.0 6408 100.000 1 3470 1 chr7B.!!$F1 3469
1 TraesCS7B01G227800 chr7A 475588660 475590925 2265 False 1567.0 2542 90.328 212 2537 2 chr7A.!!$F1 2325
2 TraesCS7B01G227800 chr7D 413659121 413661419 2298 False 1490.5 2449 88.782 212 2537 2 chr7D.!!$F1 2325
3 TraesCS7B01G227800 chr1B 606587803 606588748 945 True 1354.0 1354 92.511 2523 3469 1 chr1B.!!$R1 946
4 TraesCS7B01G227800 chr5B 15683628 15684560 932 False 1319.0 1319 92.184 2534 3467 1 chr5B.!!$F1 933
5 TraesCS7B01G227800 chr6B 134212772 134213704 932 False 1308.0 1308 91.970 2537 3470 1 chr6B.!!$F2 933
6 TraesCS7B01G227800 chr6B 12038941 12039873 932 True 1212.0 1212 90.160 2540 3470 1 chr6B.!!$R1 930
7 TraesCS7B01G227800 chr3B 715942239 715943178 939 True 1206.0 1206 89.894 2535 3470 1 chr3B.!!$R2 935
8 TraesCS7B01G227800 chr3B 807153823 807154762 939 False 1171.0 1171 89.267 2537 3470 1 chr3B.!!$F1 933
9 TraesCS7B01G227800 chr2B 167533602 167534539 937 True 1170.0 1170 89.232 2537 3470 1 chr2B.!!$R1 933
10 TraesCS7B01G227800 chr4D 57014701 57015641 940 False 1142.0 1142 88.641 2534 3470 1 chr4D.!!$F1 936
11 TraesCS7B01G227800 chr3D 2489507 2490444 937 False 1131.0 1131 88.523 2537 3470 1 chr3D.!!$F1 933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 330 0.178947 AGCCGATTAGGAGGGAGGAG 60.179 60.0 0.0 0.0 45.0 3.69 F
1278 1334 0.246086 CTCTGCTCTCCACTGTCCAC 59.754 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2076 0.109723 AGGGCGCTCTGGTTTTAACA 59.890 50.0 10.28 0.0 0.00 2.41 R
2555 2635 0.035343 GGGGCCGGATAAGATAAGGC 60.035 60.0 5.05 0.0 46.51 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.973694 TAGGTCCTGTCCAATTACGC 57.026 50.000 0.00 0.00 0.00 4.42
20 21 1.276622 AGGTCCTGTCCAATTACGCT 58.723 50.000 0.00 0.00 0.00 5.07
21 22 1.628846 AGGTCCTGTCCAATTACGCTT 59.371 47.619 0.00 0.00 0.00 4.68
22 23 2.039879 AGGTCCTGTCCAATTACGCTTT 59.960 45.455 0.00 0.00 0.00 3.51
23 24 3.262405 AGGTCCTGTCCAATTACGCTTTA 59.738 43.478 0.00 0.00 0.00 1.85
24 25 4.004982 GGTCCTGTCCAATTACGCTTTAA 58.995 43.478 0.00 0.00 0.00 1.52
25 26 4.638865 GGTCCTGTCCAATTACGCTTTAAT 59.361 41.667 0.00 0.00 0.00 1.40
26 27 5.818857 GGTCCTGTCCAATTACGCTTTAATA 59.181 40.000 0.00 0.00 0.00 0.98
27 28 6.018180 GGTCCTGTCCAATTACGCTTTAATAG 60.018 42.308 0.00 0.00 0.00 1.73
28 29 6.018180 GTCCTGTCCAATTACGCTTTAATAGG 60.018 42.308 0.00 0.00 0.00 2.57
29 30 5.820947 CCTGTCCAATTACGCTTTAATAGGT 59.179 40.000 0.00 0.00 0.00 3.08
30 31 6.317893 CCTGTCCAATTACGCTTTAATAGGTT 59.682 38.462 0.00 0.00 0.00 3.50
31 32 7.079182 TGTCCAATTACGCTTTAATAGGTTG 57.921 36.000 0.00 0.00 0.00 3.77
32 33 6.655848 TGTCCAATTACGCTTTAATAGGTTGT 59.344 34.615 0.00 0.00 0.00 3.32
33 34 7.148373 TGTCCAATTACGCTTTAATAGGTTGTC 60.148 37.037 0.00 0.00 0.00 3.18
34 35 6.316890 TCCAATTACGCTTTAATAGGTTGTCC 59.683 38.462 0.00 0.00 0.00 4.02
36 37 7.148137 CCAATTACGCTTTAATAGGTTGTCCTT 60.148 37.037 0.00 0.00 42.12 3.36
37 38 7.933215 ATTACGCTTTAATAGGTTGTCCTTT 57.067 32.000 0.00 0.00 42.12 3.11
38 39 5.622770 ACGCTTTAATAGGTTGTCCTTTG 57.377 39.130 0.00 0.00 42.12 2.77
39 40 5.067954 ACGCTTTAATAGGTTGTCCTTTGT 58.932 37.500 0.00 0.00 42.12 2.83
40 41 5.533528 ACGCTTTAATAGGTTGTCCTTTGTT 59.466 36.000 0.00 0.00 42.12 2.83
41 42 6.711645 ACGCTTTAATAGGTTGTCCTTTGTTA 59.288 34.615 0.00 0.00 42.12 2.41
42 43 7.094933 ACGCTTTAATAGGTTGTCCTTTGTTAG 60.095 37.037 0.00 0.00 42.12 2.34
43 44 7.118680 CGCTTTAATAGGTTGTCCTTTGTTAGA 59.881 37.037 0.00 0.00 42.12 2.10
44 45 8.789762 GCTTTAATAGGTTGTCCTTTGTTAGAA 58.210 33.333 0.00 0.00 42.12 2.10
48 49 7.923414 ATAGGTTGTCCTTTGTTAGAATCAC 57.077 36.000 0.00 0.00 42.12 3.06
49 50 5.941788 AGGTTGTCCTTTGTTAGAATCACT 58.058 37.500 0.00 0.00 42.12 3.41
50 51 6.365520 AGGTTGTCCTTTGTTAGAATCACTT 58.634 36.000 0.00 0.00 42.12 3.16
51 52 6.263168 AGGTTGTCCTTTGTTAGAATCACTTG 59.737 38.462 0.00 0.00 42.12 3.16
52 53 6.039382 GGTTGTCCTTTGTTAGAATCACTTGT 59.961 38.462 0.00 0.00 0.00 3.16
53 54 7.416326 GGTTGTCCTTTGTTAGAATCACTTGTT 60.416 37.037 0.00 0.00 0.00 2.83
54 55 7.639113 TGTCCTTTGTTAGAATCACTTGTTT 57.361 32.000 0.00 0.00 0.00 2.83
55 56 8.740123 TGTCCTTTGTTAGAATCACTTGTTTA 57.260 30.769 0.00 0.00 0.00 2.01
56 57 9.349713 TGTCCTTTGTTAGAATCACTTGTTTAT 57.650 29.630 0.00 0.00 0.00 1.40
57 58 9.612620 GTCCTTTGTTAGAATCACTTGTTTATG 57.387 33.333 0.00 0.00 0.00 1.90
58 59 9.567776 TCCTTTGTTAGAATCACTTGTTTATGA 57.432 29.630 0.00 0.00 0.00 2.15
78 79 9.877178 TTTATGAACAAACCACATAAACACTTT 57.123 25.926 0.00 0.00 39.73 2.66
79 80 9.877178 TTATGAACAAACCACATAAACACTTTT 57.123 25.926 0.00 0.00 34.83 2.27
82 83 9.877178 TGAACAAACCACATAAACACTTTTATT 57.123 25.926 0.00 0.00 36.00 1.40
109 110 3.425162 AGGAACTTTGACATCCCAGAC 57.575 47.619 0.00 0.00 27.25 3.51
110 111 2.076863 GGAACTTTGACATCCCAGACG 58.923 52.381 0.00 0.00 0.00 4.18
111 112 2.550208 GGAACTTTGACATCCCAGACGT 60.550 50.000 0.00 0.00 0.00 4.34
112 113 2.930826 ACTTTGACATCCCAGACGTT 57.069 45.000 0.00 0.00 0.00 3.99
113 114 2.767505 ACTTTGACATCCCAGACGTTC 58.232 47.619 0.00 0.00 0.00 3.95
114 115 2.368875 ACTTTGACATCCCAGACGTTCT 59.631 45.455 0.00 0.00 0.00 3.01
115 116 3.181454 ACTTTGACATCCCAGACGTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
116 117 2.455674 TGACATCCCAGACGTTCTTG 57.544 50.000 0.00 0.00 0.00 3.02
117 118 1.967779 TGACATCCCAGACGTTCTTGA 59.032 47.619 0.00 0.00 0.00 3.02
118 119 2.367241 TGACATCCCAGACGTTCTTGAA 59.633 45.455 0.00 0.00 0.00 2.69
119 120 3.181459 TGACATCCCAGACGTTCTTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
120 121 3.403038 ACATCCCAGACGTTCTTGAAAG 58.597 45.455 0.00 0.00 0.00 2.62
121 122 3.181454 ACATCCCAGACGTTCTTGAAAGT 60.181 43.478 1.87 1.87 0.00 2.66
122 123 3.553828 TCCCAGACGTTCTTGAAAGTT 57.446 42.857 3.73 0.00 0.00 2.66
123 124 3.202906 TCCCAGACGTTCTTGAAAGTTG 58.797 45.455 3.73 4.77 0.00 3.16
124 125 2.290641 CCCAGACGTTCTTGAAAGTTGG 59.709 50.000 15.71 15.71 0.00 3.77
125 126 3.202906 CCAGACGTTCTTGAAAGTTGGA 58.797 45.455 16.71 0.00 0.00 3.53
126 127 3.625764 CCAGACGTTCTTGAAAGTTGGAA 59.374 43.478 16.71 0.00 0.00 3.53
127 128 4.275936 CCAGACGTTCTTGAAAGTTGGAAT 59.724 41.667 16.71 0.00 0.00 3.01
128 129 5.207768 CAGACGTTCTTGAAAGTTGGAATG 58.792 41.667 3.73 0.00 0.00 2.67
129 130 4.275936 AGACGTTCTTGAAAGTTGGAATGG 59.724 41.667 3.73 0.00 0.00 3.16
130 131 4.204012 ACGTTCTTGAAAGTTGGAATGGA 58.796 39.130 0.00 0.00 0.00 3.41
131 132 4.642885 ACGTTCTTGAAAGTTGGAATGGAA 59.357 37.500 0.00 0.00 0.00 3.53
132 133 4.976116 CGTTCTTGAAAGTTGGAATGGAAC 59.024 41.667 0.00 0.00 0.00 3.62
133 134 5.221048 CGTTCTTGAAAGTTGGAATGGAACT 60.221 40.000 0.00 0.00 35.08 3.01
134 135 6.209361 GTTCTTGAAAGTTGGAATGGAACTC 58.791 40.000 0.00 0.00 32.33 3.01
135 136 5.445069 TCTTGAAAGTTGGAATGGAACTCA 58.555 37.500 0.00 0.00 32.33 3.41
136 137 5.299279 TCTTGAAAGTTGGAATGGAACTCAC 59.701 40.000 0.00 0.00 32.33 3.51
137 138 4.531854 TGAAAGTTGGAATGGAACTCACA 58.468 39.130 0.00 0.00 32.33 3.58
138 139 5.139727 TGAAAGTTGGAATGGAACTCACAT 58.860 37.500 0.00 0.00 32.33 3.21
139 140 5.598005 TGAAAGTTGGAATGGAACTCACATT 59.402 36.000 0.00 0.00 40.98 2.71
140 141 6.775142 TGAAAGTTGGAATGGAACTCACATTA 59.225 34.615 0.00 0.00 38.57 1.90
141 142 7.286546 TGAAAGTTGGAATGGAACTCACATTAA 59.713 33.333 0.00 0.00 38.57 1.40
142 143 7.781324 AAGTTGGAATGGAACTCACATTAAT 57.219 32.000 0.00 0.00 38.57 1.40
143 144 7.161773 AGTTGGAATGGAACTCACATTAATG 57.838 36.000 14.01 14.01 38.57 1.90
144 145 6.947733 AGTTGGAATGGAACTCACATTAATGA 59.052 34.615 22.16 0.18 38.57 2.57
145 146 6.757897 TGGAATGGAACTCACATTAATGAC 57.242 37.500 22.16 5.89 38.57 3.06
146 147 6.244654 TGGAATGGAACTCACATTAATGACA 58.755 36.000 22.16 6.68 38.57 3.58
147 148 6.891361 TGGAATGGAACTCACATTAATGACAT 59.109 34.615 22.16 10.42 38.57 3.06
148 149 7.396907 TGGAATGGAACTCACATTAATGACATT 59.603 33.333 22.16 16.54 38.57 2.71
149 150 8.902806 GGAATGGAACTCACATTAATGACATTA 58.097 33.333 22.16 3.68 38.57 1.90
190 191 7.406031 CTGTAAGTATTCCAGACCTAGTCAA 57.594 40.000 0.00 0.00 34.60 3.18
191 192 7.786046 TGTAAGTATTCCAGACCTAGTCAAA 57.214 36.000 0.00 0.00 34.60 2.69
192 193 7.609056 TGTAAGTATTCCAGACCTAGTCAAAC 58.391 38.462 0.00 0.00 34.60 2.93
193 194 6.936968 AAGTATTCCAGACCTAGTCAAACT 57.063 37.500 0.00 0.00 34.60 2.66
194 195 6.532988 AGTATTCCAGACCTAGTCAAACTC 57.467 41.667 0.00 0.00 34.60 3.01
195 196 4.828072 ATTCCAGACCTAGTCAAACTCC 57.172 45.455 0.00 0.00 34.60 3.85
196 197 3.254093 TCCAGACCTAGTCAAACTCCA 57.746 47.619 0.00 0.00 34.60 3.86
197 198 3.165875 TCCAGACCTAGTCAAACTCCAG 58.834 50.000 0.00 0.00 34.60 3.86
198 199 2.354203 CCAGACCTAGTCAAACTCCAGC 60.354 54.545 0.00 0.00 34.60 4.85
199 200 1.546476 AGACCTAGTCAAACTCCAGCG 59.454 52.381 0.00 0.00 34.60 5.18
200 201 1.272769 GACCTAGTCAAACTCCAGCGT 59.727 52.381 0.00 0.00 32.09 5.07
201 202 2.490903 GACCTAGTCAAACTCCAGCGTA 59.509 50.000 0.00 0.00 32.09 4.42
202 203 2.895404 ACCTAGTCAAACTCCAGCGTAA 59.105 45.455 0.00 0.00 0.00 3.18
203 204 3.514309 ACCTAGTCAAACTCCAGCGTAAT 59.486 43.478 0.00 0.00 0.00 1.89
204 205 4.020485 ACCTAGTCAAACTCCAGCGTAATT 60.020 41.667 0.00 0.00 0.00 1.40
205 206 4.567159 CCTAGTCAAACTCCAGCGTAATTC 59.433 45.833 0.00 0.00 0.00 2.17
206 207 4.002906 AGTCAAACTCCAGCGTAATTCA 57.997 40.909 0.00 0.00 0.00 2.57
207 208 4.579869 AGTCAAACTCCAGCGTAATTCAT 58.420 39.130 0.00 0.00 0.00 2.57
208 209 4.631813 AGTCAAACTCCAGCGTAATTCATC 59.368 41.667 0.00 0.00 0.00 2.92
209 210 4.391830 GTCAAACTCCAGCGTAATTCATCA 59.608 41.667 0.00 0.00 0.00 3.07
210 211 4.631377 TCAAACTCCAGCGTAATTCATCAG 59.369 41.667 0.00 0.00 0.00 2.90
225 226 5.902613 TTCATCAGGCTTTTCATTACCAG 57.097 39.130 0.00 0.00 0.00 4.00
298 305 9.601217 AGTATAAATCTGTGTTTGGTATCTGTC 57.399 33.333 0.00 0.00 0.00 3.51
299 306 7.865706 ATAAATCTGTGTTTGGTATCTGTCC 57.134 36.000 0.00 0.00 0.00 4.02
300 307 3.313012 TCTGTGTTTGGTATCTGTCCG 57.687 47.619 0.00 0.00 0.00 4.79
301 308 2.894765 TCTGTGTTTGGTATCTGTCCGA 59.105 45.455 0.00 0.00 0.00 4.55
302 309 3.513912 TCTGTGTTTGGTATCTGTCCGAT 59.486 43.478 0.00 0.00 36.11 4.18
303 310 4.020573 TCTGTGTTTGGTATCTGTCCGATT 60.021 41.667 0.00 0.00 33.48 3.34
304 311 5.186215 TCTGTGTTTGGTATCTGTCCGATTA 59.814 40.000 0.00 0.00 33.48 1.75
323 330 0.178947 AGCCGATTAGGAGGGAGGAG 60.179 60.000 0.00 0.00 45.00 3.69
409 416 1.799383 GCTGCTGCAAAGGAGTAGC 59.201 57.895 12.07 12.07 45.84 3.58
412 419 0.686789 TGCTGCAAAGGAGTAGCTCA 59.313 50.000 0.00 0.00 45.83 4.26
430 437 1.019673 CATTCATTCGCTGGGGTCAG 58.980 55.000 0.00 0.00 43.64 3.51
534 551 5.636121 TGTGTCAAGTCACACCGTATATTTC 59.364 40.000 1.43 0.00 45.32 2.17
553 570 5.381174 TTTCCTGAATCTGTTGCTTGATG 57.619 39.130 0.00 0.00 0.00 3.07
601 618 7.985184 TGGTTAATTAGTTGATCGATGCTTACT 59.015 33.333 0.54 3.18 0.00 2.24
719 748 3.754068 ACGGCGAGTCACAGTACA 58.246 55.556 16.62 0.00 0.00 2.90
721 750 1.170919 ACGGCGAGTCACAGTACAGT 61.171 55.000 16.62 0.00 0.00 3.55
722 751 0.800631 CGGCGAGTCACAGTACAGTA 59.199 55.000 0.00 0.00 0.00 2.74
723 752 1.465354 CGGCGAGTCACAGTACAGTAC 60.465 57.143 0.00 2.05 0.00 2.73
730 759 4.653868 AGTCACAGTACAGTACTAGTGCT 58.346 43.478 24.37 21.84 37.54 4.40
786 815 6.413052 ACCATATGTCATCTCAGAATATGCC 58.587 40.000 1.24 0.00 32.34 4.40
793 822 5.936372 GTCATCTCAGAATATGCCTGCAATA 59.064 40.000 0.00 0.00 0.00 1.90
797 826 7.444629 TCTCAGAATATGCCTGCAATATTTC 57.555 36.000 0.00 0.00 0.00 2.17
802 831 8.953313 CAGAATATGCCTGCAATATTTCATAGA 58.047 33.333 0.00 0.00 0.00 1.98
804 833 9.784680 GAATATGCCTGCAATATTTCATAGAAG 57.215 33.333 0.00 0.00 0.00 2.85
808 837 8.696043 TGCCTGCAATATTTCATAGAAGTAAT 57.304 30.769 0.00 0.00 0.00 1.89
810 839 9.403110 GCCTGCAATATTTCATAGAAGTAATTG 57.597 33.333 0.00 0.00 0.00 2.32
825 854 7.620880 AGAAGTAATTGTAACTCACATGGCTA 58.379 34.615 0.00 0.00 36.90 3.93
828 857 9.899661 AAGTAATTGTAACTCACATGGCTAATA 57.100 29.630 0.00 0.00 36.90 0.98
935 966 4.666532 GTGACAAGGTGCGTGCGC 62.667 66.667 9.85 9.85 42.35 6.09
1064 1095 1.981495 CACTCCTCACTCCCTTTTCCT 59.019 52.381 0.00 0.00 0.00 3.36
1065 1096 1.981495 ACTCCTCACTCCCTTTTCCTG 59.019 52.381 0.00 0.00 0.00 3.86
1168 1199 4.854924 CATGGCGCCCACATCGGA 62.855 66.667 26.77 1.65 35.80 4.55
1171 1202 3.845259 GGCGCCCACATCGGACTA 61.845 66.667 18.11 0.00 36.56 2.59
1172 1203 2.421739 GCGCCCACATCGGACTAT 59.578 61.111 0.00 0.00 36.56 2.12
1173 1204 1.227556 GCGCCCACATCGGACTATT 60.228 57.895 0.00 0.00 36.56 1.73
1179 1210 1.134098 CCACATCGGACTATTGGGCTT 60.134 52.381 0.00 0.00 36.56 4.35
1253 1309 6.012745 AGAGCTTTCTCTCTTCTCTTCTCTT 58.987 40.000 0.00 0.00 46.32 2.85
1254 1310 6.151817 AGAGCTTTCTCTCTTCTCTTCTCTTC 59.848 42.308 0.00 0.00 46.32 2.87
1255 1311 6.012745 AGCTTTCTCTCTTCTCTTCTCTTCT 58.987 40.000 0.00 0.00 0.00 2.85
1256 1312 6.151817 AGCTTTCTCTCTTCTCTTCTCTTCTC 59.848 42.308 0.00 0.00 0.00 2.87
1257 1313 6.151817 GCTTTCTCTCTTCTCTTCTCTTCTCT 59.848 42.308 0.00 0.00 0.00 3.10
1258 1314 7.309438 GCTTTCTCTCTTCTCTTCTCTTCTCTT 60.309 40.741 0.00 0.00 0.00 2.85
1259 1315 7.687941 TTCTCTCTTCTCTTCTCTTCTCTTC 57.312 40.000 0.00 0.00 0.00 2.87
1260 1316 7.020827 TCTCTCTTCTCTTCTCTTCTCTTCT 57.979 40.000 0.00 0.00 0.00 2.85
1261 1317 7.106239 TCTCTCTTCTCTTCTCTTCTCTTCTC 58.894 42.308 0.00 0.00 0.00 2.87
1262 1318 7.020827 TCTCTTCTCTTCTCTTCTCTTCTCT 57.979 40.000 0.00 0.00 0.00 3.10
1278 1334 0.246086 CTCTGCTCTCCACTGTCCAC 59.754 60.000 0.00 0.00 0.00 4.02
1405 1461 2.187946 CTGGTGGCCGTCATCCTC 59.812 66.667 0.00 0.00 0.00 3.71
1421 1477 1.062658 TCCTCCTCATCCTGCTCATCA 60.063 52.381 0.00 0.00 0.00 3.07
1639 1695 4.742201 CAGCAGGTGACCGTCCCG 62.742 72.222 0.00 0.00 0.00 5.14
1765 1821 4.135153 CAGGACGAGACGGCTGGG 62.135 72.222 4.92 0.00 34.07 4.45
1825 1881 4.360405 AAGGCCGGGGCGTTCATT 62.360 61.111 15.57 0.12 44.46 2.57
1978 2034 1.666872 CGACGTCTGAACCCAACCC 60.667 63.158 14.70 0.00 0.00 4.11
1982 2038 0.605589 CGTCTGAACCCAACCCTTCC 60.606 60.000 0.00 0.00 0.00 3.46
1985 2041 0.482887 CTGAACCCAACCCTTCCCTT 59.517 55.000 0.00 0.00 0.00 3.95
1986 2042 0.481128 TGAACCCAACCCTTCCCTTC 59.519 55.000 0.00 0.00 0.00 3.46
1987 2043 0.251653 GAACCCAACCCTTCCCTTCC 60.252 60.000 0.00 0.00 0.00 3.46
1988 2044 1.736491 AACCCAACCCTTCCCTTCCC 61.736 60.000 0.00 0.00 0.00 3.97
1992 2048 1.544151 AACCCTTCCCTTCCCTCCC 60.544 63.158 0.00 0.00 0.00 4.30
1993 2049 2.075278 AACCCTTCCCTTCCCTCCCT 62.075 60.000 0.00 0.00 0.00 4.20
1994 2050 1.694525 CCCTTCCCTTCCCTCCCTC 60.695 68.421 0.00 0.00 0.00 4.30
1995 2051 2.066999 CCTTCCCTTCCCTCCCTCG 61.067 68.421 0.00 0.00 0.00 4.63
1996 2052 2.687566 TTCCCTTCCCTCCCTCGC 60.688 66.667 0.00 0.00 0.00 5.03
1997 2053 3.254035 TTCCCTTCCCTCCCTCGCT 62.254 63.158 0.00 0.00 0.00 4.93
1998 2054 2.689034 CCCTTCCCTCCCTCGCTT 60.689 66.667 0.00 0.00 0.00 4.68
1999 2055 2.301738 CCCTTCCCTCCCTCGCTTT 61.302 63.158 0.00 0.00 0.00 3.51
2000 2056 1.685820 CCTTCCCTCCCTCGCTTTT 59.314 57.895 0.00 0.00 0.00 2.27
2001 2057 0.393132 CCTTCCCTCCCTCGCTTTTC 60.393 60.000 0.00 0.00 0.00 2.29
2002 2058 0.393132 CTTCCCTCCCTCGCTTTTCC 60.393 60.000 0.00 0.00 0.00 3.13
2003 2059 2.125106 CCCTCCCTCGCTTTTCCG 60.125 66.667 0.00 0.00 0.00 4.30
2004 2060 2.663196 CCTCCCTCGCTTTTCCGT 59.337 61.111 0.00 0.00 0.00 4.69
2005 2061 1.741770 CCTCCCTCGCTTTTCCGTG 60.742 63.158 0.00 0.00 0.00 4.94
2006 2062 2.358247 TCCCTCGCTTTTCCGTGC 60.358 61.111 0.00 0.00 0.00 5.34
2007 2063 3.431725 CCCTCGCTTTTCCGTGCC 61.432 66.667 0.00 0.00 0.00 5.01
2008 2064 2.668212 CCTCGCTTTTCCGTGCCA 60.668 61.111 0.00 0.00 0.00 4.92
2009 2065 2.040544 CCTCGCTTTTCCGTGCCAT 61.041 57.895 0.00 0.00 0.00 4.40
2010 2066 1.425428 CTCGCTTTTCCGTGCCATC 59.575 57.895 0.00 0.00 0.00 3.51
2011 2067 1.003839 TCGCTTTTCCGTGCCATCT 60.004 52.632 0.00 0.00 0.00 2.90
2012 2068 1.135315 CGCTTTTCCGTGCCATCTG 59.865 57.895 0.00 0.00 0.00 2.90
2013 2069 1.153958 GCTTTTCCGTGCCATCTGC 60.154 57.895 0.00 0.00 41.77 4.26
2014 2070 1.508088 CTTTTCCGTGCCATCTGCC 59.492 57.895 0.00 0.00 40.16 4.85
2015 2071 1.228398 TTTTCCGTGCCATCTGCCA 60.228 52.632 0.00 0.00 40.16 4.92
2016 2072 0.825425 TTTTCCGTGCCATCTGCCAA 60.825 50.000 0.00 0.00 40.16 4.52
2017 2073 1.523154 TTTCCGTGCCATCTGCCAAC 61.523 55.000 0.00 0.00 40.16 3.77
2018 2074 2.360350 CCGTGCCATCTGCCAACT 60.360 61.111 0.00 0.00 40.16 3.16
2019 2075 2.401766 CCGTGCCATCTGCCAACTC 61.402 63.158 0.00 0.00 40.16 3.01
2020 2076 1.376424 CGTGCCATCTGCCAACTCT 60.376 57.895 0.00 0.00 40.16 3.24
2021 2077 1.642037 CGTGCCATCTGCCAACTCTG 61.642 60.000 0.00 0.00 40.16 3.35
2022 2078 0.607489 GTGCCATCTGCCAACTCTGT 60.607 55.000 0.00 0.00 40.16 3.41
2023 2079 0.111061 TGCCATCTGCCAACTCTGTT 59.889 50.000 0.00 0.00 40.16 3.16
2024 2080 1.350684 TGCCATCTGCCAACTCTGTTA 59.649 47.619 0.00 0.00 40.16 2.41
2025 2081 2.224744 TGCCATCTGCCAACTCTGTTAA 60.225 45.455 0.00 0.00 40.16 2.01
2026 2082 2.819608 GCCATCTGCCAACTCTGTTAAA 59.180 45.455 0.00 0.00 0.00 1.52
2027 2083 3.255642 GCCATCTGCCAACTCTGTTAAAA 59.744 43.478 0.00 0.00 0.00 1.52
2028 2084 4.798574 CCATCTGCCAACTCTGTTAAAAC 58.201 43.478 0.00 0.00 0.00 2.43
2029 2085 4.321230 CCATCTGCCAACTCTGTTAAAACC 60.321 45.833 0.00 0.00 0.00 3.27
2030 2086 3.892284 TCTGCCAACTCTGTTAAAACCA 58.108 40.909 0.00 0.00 0.00 3.67
2031 2087 3.882888 TCTGCCAACTCTGTTAAAACCAG 59.117 43.478 0.00 0.00 0.00 4.00
2034 2090 3.304726 GCCAACTCTGTTAAAACCAGAGC 60.305 47.826 17.23 5.15 44.47 4.09
2057 2113 1.820010 CTTTTGGTTCTGCTGGGCCC 61.820 60.000 17.59 17.59 0.00 5.80
2074 2131 4.455070 GGCCCTCCCTCAAACTATTTAT 57.545 45.455 0.00 0.00 0.00 1.40
2075 2132 5.578157 GGCCCTCCCTCAAACTATTTATA 57.422 43.478 0.00 0.00 0.00 0.98
2076 2133 5.314529 GGCCCTCCCTCAAACTATTTATAC 58.685 45.833 0.00 0.00 0.00 1.47
2077 2134 5.073280 GGCCCTCCCTCAAACTATTTATACT 59.927 44.000 0.00 0.00 0.00 2.12
2078 2135 6.231951 GCCCTCCCTCAAACTATTTATACTC 58.768 44.000 0.00 0.00 0.00 2.59
2079 2136 6.043358 GCCCTCCCTCAAACTATTTATACTCT 59.957 42.308 0.00 0.00 0.00 3.24
2080 2137 7.445945 CCCTCCCTCAAACTATTTATACTCTG 58.554 42.308 0.00 0.00 0.00 3.35
2081 2138 6.931840 CCTCCCTCAAACTATTTATACTCTGC 59.068 42.308 0.00 0.00 0.00 4.26
2082 2139 7.202047 CCTCCCTCAAACTATTTATACTCTGCT 60.202 40.741 0.00 0.00 0.00 4.24
2083 2140 7.727181 TCCCTCAAACTATTTATACTCTGCTC 58.273 38.462 0.00 0.00 0.00 4.26
2084 2141 7.565398 TCCCTCAAACTATTTATACTCTGCTCT 59.435 37.037 0.00 0.00 0.00 4.09
2099 2156 1.142314 CTCTGCTCTGCTCTGCTCC 59.858 63.158 0.00 0.00 0.00 4.70
2116 2177 5.532406 TCTGCTCCGGTAAATACGTATAGTT 59.468 40.000 8.83 3.08 0.00 2.24
2117 2178 6.039717 TCTGCTCCGGTAAATACGTATAGTTT 59.960 38.462 8.83 3.19 0.00 2.66
2229 2299 5.502089 TTAAGACGTATTCAGGGGGAAAA 57.498 39.130 0.00 0.00 39.39 2.29
2262 2332 9.961265 TTGCTAGTGTTGTATCTATACATGTAC 57.039 33.333 7.96 0.00 42.32 2.90
2263 2333 8.573885 TGCTAGTGTTGTATCTATACATGTACC 58.426 37.037 7.96 0.00 42.32 3.34
2264 2334 7.749570 GCTAGTGTTGTATCTATACATGTACCG 59.250 40.741 7.96 2.27 42.32 4.02
2265 2335 7.578310 AGTGTTGTATCTATACATGTACCGT 57.422 36.000 7.96 0.00 42.32 4.83
2266 2336 7.423199 AGTGTTGTATCTATACATGTACCGTG 58.577 38.462 7.96 0.00 42.32 4.94
2277 2347 3.058501 ACATGTACCGTGCTTGCTTTTAC 60.059 43.478 0.00 0.00 0.00 2.01
2357 2430 3.877559 TGGTAGAGCAATGGAAGATGTG 58.122 45.455 0.00 0.00 0.00 3.21
2393 2467 2.843730 TCTTGGCCCTCTTGCTGTATTA 59.156 45.455 0.00 0.00 0.00 0.98
2431 2505 6.632909 TGAAAGAAAATGTTATCATGGCCAG 58.367 36.000 13.05 3.43 34.19 4.85
2432 2506 6.436847 TGAAAGAAAATGTTATCATGGCCAGA 59.563 34.615 13.05 9.59 34.19 3.86
2433 2507 7.124599 TGAAAGAAAATGTTATCATGGCCAGAT 59.875 33.333 13.05 16.27 34.19 2.90
2434 2508 6.401047 AGAAAATGTTATCATGGCCAGATG 57.599 37.500 21.20 12.81 34.19 2.90
2435 2509 5.303589 AGAAAATGTTATCATGGCCAGATGG 59.696 40.000 21.20 8.58 34.19 3.51
2436 2510 2.895404 AATGTTATCATGGCCAGATGGC 59.105 45.455 21.20 15.70 46.06 4.40
2461 2538 7.254137 CCTCCTCATCGAATAGTATGTACATG 58.746 42.308 18.81 0.00 0.00 3.21
2485 2562 2.747686 GCCCCACCTTCTCGTTCA 59.252 61.111 0.00 0.00 0.00 3.18
2503 2580 5.050634 TCGTTCAGTATTTGTGTCTTTTCCG 60.051 40.000 0.00 0.00 0.00 4.30
2510 2587 0.400213 TGTGTCTTTTCCGGAGCCAT 59.600 50.000 3.34 0.00 0.00 4.40
2516 2593 0.323360 TTTTCCGGAGCCATCCTTGG 60.323 55.000 3.34 0.00 44.22 3.61
2517 2594 2.210144 TTTCCGGAGCCATCCTTGGG 62.210 60.000 3.34 0.00 44.22 4.12
2603 2683 1.135333 GGAGCAAAACGGACAAACCAA 59.865 47.619 0.00 0.00 38.90 3.67
2656 2736 1.528309 CCTGTTTTGTGTCCGGGCT 60.528 57.895 7.97 0.00 0.00 5.19
2690 2770 1.655329 CAAACTTGCGCCGGGTTTA 59.345 52.632 17.47 0.00 32.80 2.01
2694 2774 1.969589 CTTGCGCCGGGTTTAGGTT 60.970 57.895 4.18 0.00 0.00 3.50
2705 2785 1.003112 TTTAGGTTGCGGCGGACAT 60.003 52.632 9.78 0.87 0.00 3.06
2782 2862 1.181786 CCACCCGCCAACATAAATGT 58.818 50.000 0.00 0.00 44.20 2.71
2822 2902 2.265739 GTCATCCGCACAGCTCCA 59.734 61.111 0.00 0.00 0.00 3.86
2849 2929 4.576879 GTCGTCCTTCTTAAATGGGAAGT 58.423 43.478 0.00 0.00 37.73 3.01
2860 2940 4.754667 GGGAAGTCGTGGACCGGC 62.755 72.222 0.00 0.00 42.97 6.13
2902 2982 4.421554 CCCCTCTCTGCCCCCTCA 62.422 72.222 0.00 0.00 0.00 3.86
2932 3015 0.531200 CGCTCGAAACCCTAACTCCT 59.469 55.000 0.00 0.00 0.00 3.69
2939 3022 1.625511 AACCCTAACTCCTCGTCGTT 58.374 50.000 0.00 0.00 0.00 3.85
2941 3024 0.886563 CCCTAACTCCTCGTCGTTGT 59.113 55.000 0.00 0.00 0.00 3.32
2972 3056 3.451894 CCGCACCATGGGCCTTTC 61.452 66.667 18.09 0.00 0.00 2.62
3002 3086 2.429930 CAAGGGGAAGCACGACCA 59.570 61.111 0.00 0.00 0.00 4.02
3004 3088 0.609131 CAAGGGGAAGCACGACCATT 60.609 55.000 0.00 0.00 0.00 3.16
3330 3414 2.593978 CTCCTCCCCGACGACCTA 59.406 66.667 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.276622 AGCGTAATTGGACAGGACCT 58.723 50.000 0.00 0.00 0.00 3.85
2 3 2.109425 AAGCGTAATTGGACAGGACC 57.891 50.000 0.00 0.00 0.00 4.46
3 4 5.813080 ATTAAAGCGTAATTGGACAGGAC 57.187 39.130 0.00 0.00 0.00 3.85
5 6 5.820947 ACCTATTAAAGCGTAATTGGACAGG 59.179 40.000 21.50 14.36 35.06 4.00
6 7 6.920569 ACCTATTAAAGCGTAATTGGACAG 57.079 37.500 21.50 6.74 35.06 3.51
7 8 6.655848 ACAACCTATTAAAGCGTAATTGGACA 59.344 34.615 21.50 0.00 35.06 4.02
8 9 7.080353 ACAACCTATTAAAGCGTAATTGGAC 57.920 36.000 21.50 0.00 35.06 4.02
9 10 6.316890 GGACAACCTATTAAAGCGTAATTGGA 59.683 38.462 21.50 0.00 35.06 3.53
10 11 6.317893 AGGACAACCTATTAAAGCGTAATTGG 59.682 38.462 16.41 16.41 45.83 3.16
11 12 7.316544 AGGACAACCTATTAAAGCGTAATTG 57.683 36.000 1.67 0.80 45.83 2.32
27 28 6.039382 ACAAGTGATTCTAACAAAGGACAACC 59.961 38.462 0.00 0.00 0.00 3.77
28 29 7.027778 ACAAGTGATTCTAACAAAGGACAAC 57.972 36.000 0.00 0.00 0.00 3.32
29 30 7.639113 AACAAGTGATTCTAACAAAGGACAA 57.361 32.000 0.00 0.00 0.00 3.18
30 31 7.639113 AAACAAGTGATTCTAACAAAGGACA 57.361 32.000 0.00 0.00 0.00 4.02
31 32 9.612620 CATAAACAAGTGATTCTAACAAAGGAC 57.387 33.333 0.00 0.00 0.00 3.85
32 33 9.567776 TCATAAACAAGTGATTCTAACAAAGGA 57.432 29.630 0.00 0.00 0.00 3.36
52 53 9.877178 AAAGTGTTTATGTGGTTTGTTCATAAA 57.123 25.926 0.00 0.00 39.83 1.40
53 54 9.877178 AAAAGTGTTTATGTGGTTTGTTCATAA 57.123 25.926 0.00 0.00 33.90 1.90
56 57 9.877178 AATAAAAGTGTTTATGTGGTTTGTTCA 57.123 25.926 0.00 0.00 39.40 3.18
82 83 7.343316 TCTGGGATGTCAAAGTTCCTTTAAAAA 59.657 33.333 0.00 0.00 31.96 1.94
83 84 6.836527 TCTGGGATGTCAAAGTTCCTTTAAAA 59.163 34.615 0.00 0.00 31.96 1.52
84 85 6.264518 GTCTGGGATGTCAAAGTTCCTTTAAA 59.735 38.462 0.00 0.00 31.96 1.52
85 86 5.768164 GTCTGGGATGTCAAAGTTCCTTTAA 59.232 40.000 0.00 0.00 31.96 1.52
86 87 5.313712 GTCTGGGATGTCAAAGTTCCTTTA 58.686 41.667 0.00 0.00 31.96 1.85
87 88 4.145052 GTCTGGGATGTCAAAGTTCCTTT 58.855 43.478 0.00 0.00 33.58 3.11
88 89 3.756117 GTCTGGGATGTCAAAGTTCCTT 58.244 45.455 0.00 0.00 0.00 3.36
89 90 2.289694 CGTCTGGGATGTCAAAGTTCCT 60.290 50.000 0.00 0.00 0.00 3.36
90 91 2.076863 CGTCTGGGATGTCAAAGTTCC 58.923 52.381 0.00 0.00 0.00 3.62
91 92 2.767505 ACGTCTGGGATGTCAAAGTTC 58.232 47.619 0.00 0.00 0.00 3.01
92 93 2.930826 ACGTCTGGGATGTCAAAGTT 57.069 45.000 0.00 0.00 0.00 2.66
93 94 2.368875 AGAACGTCTGGGATGTCAAAGT 59.631 45.455 0.00 0.00 29.72 2.66
94 95 3.045601 AGAACGTCTGGGATGTCAAAG 57.954 47.619 0.00 0.00 29.72 2.77
95 96 3.138304 CAAGAACGTCTGGGATGTCAAA 58.862 45.455 0.00 0.00 29.72 2.69
96 97 2.367241 TCAAGAACGTCTGGGATGTCAA 59.633 45.455 0.00 0.00 29.72 3.18
97 98 1.967779 TCAAGAACGTCTGGGATGTCA 59.032 47.619 0.00 0.00 29.72 3.58
98 99 2.743636 TCAAGAACGTCTGGGATGTC 57.256 50.000 0.00 0.00 29.72 3.06
99 100 3.181454 ACTTTCAAGAACGTCTGGGATGT 60.181 43.478 0.00 0.00 32.68 3.06
100 101 3.403038 ACTTTCAAGAACGTCTGGGATG 58.597 45.455 0.00 0.00 0.00 3.51
101 102 3.771577 ACTTTCAAGAACGTCTGGGAT 57.228 42.857 0.00 0.00 0.00 3.85
102 103 3.202906 CAACTTTCAAGAACGTCTGGGA 58.797 45.455 0.00 0.00 0.00 4.37
103 104 2.290641 CCAACTTTCAAGAACGTCTGGG 59.709 50.000 0.00 3.37 0.00 4.45
104 105 3.202906 TCCAACTTTCAAGAACGTCTGG 58.797 45.455 0.00 11.07 0.00 3.86
105 106 4.875544 TTCCAACTTTCAAGAACGTCTG 57.124 40.909 0.00 0.00 0.00 3.51
106 107 4.275936 CCATTCCAACTTTCAAGAACGTCT 59.724 41.667 0.00 0.00 0.00 4.18
107 108 4.274950 TCCATTCCAACTTTCAAGAACGTC 59.725 41.667 0.00 0.00 0.00 4.34
108 109 4.204012 TCCATTCCAACTTTCAAGAACGT 58.796 39.130 0.00 0.00 0.00 3.99
109 110 4.829064 TCCATTCCAACTTTCAAGAACG 57.171 40.909 0.00 0.00 0.00 3.95
110 111 6.149129 AGTTCCATTCCAACTTTCAAGAAC 57.851 37.500 0.00 0.00 29.29 3.01
111 112 5.890985 TGAGTTCCATTCCAACTTTCAAGAA 59.109 36.000 0.00 0.00 34.10 2.52
112 113 5.299279 GTGAGTTCCATTCCAACTTTCAAGA 59.701 40.000 0.00 0.00 34.10 3.02
113 114 5.067674 TGTGAGTTCCATTCCAACTTTCAAG 59.932 40.000 0.00 0.00 34.10 3.02
114 115 4.952957 TGTGAGTTCCATTCCAACTTTCAA 59.047 37.500 0.00 0.00 34.10 2.69
115 116 4.531854 TGTGAGTTCCATTCCAACTTTCA 58.468 39.130 0.00 0.00 34.10 2.69
116 117 5.712152 ATGTGAGTTCCATTCCAACTTTC 57.288 39.130 0.00 0.00 34.10 2.62
117 118 7.595819 TTAATGTGAGTTCCATTCCAACTTT 57.404 32.000 0.00 0.00 34.10 2.66
118 119 7.451255 TCATTAATGTGAGTTCCATTCCAACTT 59.549 33.333 14.97 0.00 34.10 2.66
119 120 6.947733 TCATTAATGTGAGTTCCATTCCAACT 59.052 34.615 14.97 0.00 36.77 3.16
120 121 7.029563 GTCATTAATGTGAGTTCCATTCCAAC 58.970 38.462 14.97 0.00 34.51 3.77
121 122 6.718912 TGTCATTAATGTGAGTTCCATTCCAA 59.281 34.615 14.97 0.00 34.51 3.53
122 123 6.244654 TGTCATTAATGTGAGTTCCATTCCA 58.755 36.000 14.97 0.00 34.51 3.53
123 124 6.757897 TGTCATTAATGTGAGTTCCATTCC 57.242 37.500 14.97 0.00 34.51 3.01
154 155 9.436957 CTGGAATACTTACAGTTAAGTCAATGT 57.563 33.333 0.36 0.00 43.91 2.71
155 156 9.653287 TCTGGAATACTTACAGTTAAGTCAATG 57.347 33.333 0.36 0.00 43.91 2.82
156 157 9.654663 GTCTGGAATACTTACAGTTAAGTCAAT 57.345 33.333 0.36 0.00 43.91 2.57
157 158 8.092687 GGTCTGGAATACTTACAGTTAAGTCAA 58.907 37.037 0.36 0.00 43.91 3.18
158 159 7.453752 AGGTCTGGAATACTTACAGTTAAGTCA 59.546 37.037 0.36 0.00 43.91 3.41
159 160 7.838884 AGGTCTGGAATACTTACAGTTAAGTC 58.161 38.462 0.36 0.00 43.91 3.01
161 162 8.968969 ACTAGGTCTGGAATACTTACAGTTAAG 58.031 37.037 0.00 0.00 40.68 1.85
162 163 8.890410 ACTAGGTCTGGAATACTTACAGTTAA 57.110 34.615 0.00 0.00 34.02 2.01
163 164 8.111545 TGACTAGGTCTGGAATACTTACAGTTA 58.888 37.037 0.00 0.00 33.15 2.24
164 165 6.952358 TGACTAGGTCTGGAATACTTACAGTT 59.048 38.462 0.00 0.00 33.15 3.16
165 166 6.491383 TGACTAGGTCTGGAATACTTACAGT 58.509 40.000 0.00 0.00 33.15 3.55
166 167 7.406031 TTGACTAGGTCTGGAATACTTACAG 57.594 40.000 0.00 0.00 33.15 2.74
167 168 7.453752 AGTTTGACTAGGTCTGGAATACTTACA 59.546 37.037 0.00 0.00 33.15 2.41
168 169 7.838884 AGTTTGACTAGGTCTGGAATACTTAC 58.161 38.462 0.00 0.00 33.15 2.34
169 170 7.123847 GGAGTTTGACTAGGTCTGGAATACTTA 59.876 40.741 0.00 0.00 33.15 2.24
170 171 6.070710 GGAGTTTGACTAGGTCTGGAATACTT 60.071 42.308 0.00 0.00 33.15 2.24
171 172 5.422650 GGAGTTTGACTAGGTCTGGAATACT 59.577 44.000 0.00 0.00 33.15 2.12
172 173 5.187186 TGGAGTTTGACTAGGTCTGGAATAC 59.813 44.000 0.00 0.00 33.15 1.89
173 174 5.338632 TGGAGTTTGACTAGGTCTGGAATA 58.661 41.667 0.00 0.00 33.15 1.75
174 175 4.168101 TGGAGTTTGACTAGGTCTGGAAT 58.832 43.478 0.00 0.00 33.15 3.01
175 176 3.578716 CTGGAGTTTGACTAGGTCTGGAA 59.421 47.826 0.00 0.00 33.15 3.53
176 177 3.165875 CTGGAGTTTGACTAGGTCTGGA 58.834 50.000 0.00 0.00 33.15 3.86
177 178 2.354203 GCTGGAGTTTGACTAGGTCTGG 60.354 54.545 0.00 0.00 33.15 3.86
178 179 2.672478 CGCTGGAGTTTGACTAGGTCTG 60.672 54.545 0.00 0.00 33.15 3.51
179 180 1.546476 CGCTGGAGTTTGACTAGGTCT 59.454 52.381 0.00 0.00 33.15 3.85
180 181 1.272769 ACGCTGGAGTTTGACTAGGTC 59.727 52.381 0.00 0.00 0.00 3.85
181 182 1.339097 ACGCTGGAGTTTGACTAGGT 58.661 50.000 0.00 0.00 0.00 3.08
182 183 3.587797 TTACGCTGGAGTTTGACTAGG 57.412 47.619 0.00 0.00 0.00 3.02
183 184 5.168569 TGAATTACGCTGGAGTTTGACTAG 58.831 41.667 0.00 0.00 0.00 2.57
184 185 5.142061 TGAATTACGCTGGAGTTTGACTA 57.858 39.130 0.00 0.00 0.00 2.59
185 186 4.002906 TGAATTACGCTGGAGTTTGACT 57.997 40.909 0.00 0.00 0.00 3.41
186 187 4.391830 TGATGAATTACGCTGGAGTTTGAC 59.608 41.667 0.00 0.00 0.00 3.18
187 188 4.574892 TGATGAATTACGCTGGAGTTTGA 58.425 39.130 0.00 0.00 0.00 2.69
188 189 4.201851 CCTGATGAATTACGCTGGAGTTTG 60.202 45.833 0.00 0.00 0.00 2.93
189 190 3.941483 CCTGATGAATTACGCTGGAGTTT 59.059 43.478 0.00 0.00 0.00 2.66
190 191 3.535561 CCTGATGAATTACGCTGGAGTT 58.464 45.455 0.00 0.00 0.00 3.01
191 192 2.743183 GCCTGATGAATTACGCTGGAGT 60.743 50.000 0.00 0.00 0.00 3.85
192 193 1.869767 GCCTGATGAATTACGCTGGAG 59.130 52.381 0.00 0.00 0.00 3.86
193 194 1.486310 AGCCTGATGAATTACGCTGGA 59.514 47.619 0.00 0.00 0.00 3.86
194 195 1.959042 AGCCTGATGAATTACGCTGG 58.041 50.000 0.00 0.00 0.00 4.85
195 196 4.142622 TGAAAAGCCTGATGAATTACGCTG 60.143 41.667 0.00 0.00 0.00 5.18
196 197 4.009675 TGAAAAGCCTGATGAATTACGCT 58.990 39.130 0.00 0.00 0.00 5.07
197 198 4.355543 TGAAAAGCCTGATGAATTACGC 57.644 40.909 0.00 0.00 0.00 4.42
198 199 6.912591 GGTAATGAAAAGCCTGATGAATTACG 59.087 38.462 0.00 0.00 32.56 3.18
199 200 7.771183 TGGTAATGAAAAGCCTGATGAATTAC 58.229 34.615 0.00 0.00 0.00 1.89
200 201 7.416664 GCTGGTAATGAAAAGCCTGATGAATTA 60.417 37.037 0.00 0.00 0.00 1.40
201 202 6.628844 GCTGGTAATGAAAAGCCTGATGAATT 60.629 38.462 0.00 0.00 0.00 2.17
202 203 5.163478 GCTGGTAATGAAAAGCCTGATGAAT 60.163 40.000 0.00 0.00 0.00 2.57
203 204 4.158394 GCTGGTAATGAAAAGCCTGATGAA 59.842 41.667 0.00 0.00 0.00 2.57
204 205 3.696051 GCTGGTAATGAAAAGCCTGATGA 59.304 43.478 0.00 0.00 0.00 2.92
205 206 3.444742 TGCTGGTAATGAAAAGCCTGATG 59.555 43.478 0.00 0.00 34.70 3.07
206 207 3.700538 TGCTGGTAATGAAAAGCCTGAT 58.299 40.909 0.00 0.00 34.70 2.90
207 208 3.153369 TGCTGGTAATGAAAAGCCTGA 57.847 42.857 0.00 0.00 34.70 3.86
208 209 3.940209 TTGCTGGTAATGAAAAGCCTG 57.060 42.857 0.00 0.00 34.70 4.85
209 210 5.221702 ACAAATTGCTGGTAATGAAAAGCCT 60.222 36.000 0.00 0.00 34.70 4.58
210 211 4.996758 ACAAATTGCTGGTAATGAAAAGCC 59.003 37.500 0.00 0.00 34.70 4.35
225 226 8.746922 TGACTTGATAGATGAAAACAAATTGC 57.253 30.769 0.00 0.00 0.00 3.56
293 300 2.557056 CCTAATCGGCTAATCGGACAGA 59.443 50.000 0.00 0.00 0.00 3.41
297 304 2.168496 CCTCCTAATCGGCTAATCGGA 58.832 52.381 0.00 0.00 0.00 4.55
298 305 1.204941 CCCTCCTAATCGGCTAATCGG 59.795 57.143 0.00 0.00 0.00 4.18
299 306 2.164624 CTCCCTCCTAATCGGCTAATCG 59.835 54.545 0.00 0.00 0.00 3.34
300 307 2.498078 CCTCCCTCCTAATCGGCTAATC 59.502 54.545 0.00 0.00 0.00 1.75
301 308 2.111972 TCCTCCCTCCTAATCGGCTAAT 59.888 50.000 0.00 0.00 0.00 1.73
302 309 1.502039 TCCTCCCTCCTAATCGGCTAA 59.498 52.381 0.00 0.00 0.00 3.09
303 310 1.075698 CTCCTCCCTCCTAATCGGCTA 59.924 57.143 0.00 0.00 0.00 3.93
304 311 0.178947 CTCCTCCCTCCTAATCGGCT 60.179 60.000 0.00 0.00 0.00 5.52
323 330 5.420409 TGTTTTGTTGGACCAAACATTACC 58.580 37.500 8.94 0.00 39.68 2.85
407 414 0.465097 CCCCAGCGAATGAATGAGCT 60.465 55.000 0.00 0.00 41.07 4.09
408 415 0.749454 ACCCCAGCGAATGAATGAGC 60.749 55.000 0.00 0.00 0.00 4.26
409 416 1.303309 GACCCCAGCGAATGAATGAG 58.697 55.000 0.00 0.00 0.00 2.90
412 419 3.483954 CTGACCCCAGCGAATGAAT 57.516 52.632 0.00 0.00 33.07 2.57
432 439 9.981114 CCCAATAGTTTCAGAAACAACTAATTT 57.019 29.630 24.85 7.02 43.79 1.82
433 440 8.585018 CCCCAATAGTTTCAGAAACAACTAATT 58.415 33.333 24.85 13.81 43.79 1.40
457 474 1.279025 TTGACATGCTACCCTCCCCC 61.279 60.000 0.00 0.00 0.00 5.40
465 482 8.725148 CCCTTTAGATATGATTTGACATGCTAC 58.275 37.037 0.00 0.00 0.00 3.58
467 484 7.446625 GTCCCTTTAGATATGATTTGACATGCT 59.553 37.037 0.00 0.00 0.00 3.79
528 545 7.683704 GCATCAAGCAACAGATTCAGGAAATAT 60.684 37.037 0.00 0.00 44.79 1.28
534 551 3.146618 GCATCAAGCAACAGATTCAGG 57.853 47.619 0.00 0.00 44.79 3.86
553 570 5.152097 CAACACTCTCACTCAAATGAATGC 58.848 41.667 0.00 0.00 0.00 3.56
556 573 4.780815 ACCAACACTCTCACTCAAATGAA 58.219 39.130 0.00 0.00 0.00 2.57
601 618 2.596452 GACTCGAGTCAAGCAATCGAA 58.404 47.619 34.97 0.00 44.09 3.71
626 643 9.233232 GTCAAAATCAGAACTTAATTTTCACGT 57.767 29.630 0.00 0.00 31.91 4.49
627 644 9.450807 AGTCAAAATCAGAACTTAATTTTCACG 57.549 29.630 0.00 0.00 31.29 4.35
719 748 2.772691 GCCGGCGAGCACTAGTACT 61.773 63.158 12.58 0.00 0.00 2.73
721 750 3.884350 CGCCGGCGAGCACTAGTA 61.884 66.667 44.86 0.00 42.83 1.82
747 776 2.128771 ATGGTCACTTGCATGTACCC 57.871 50.000 19.34 15.62 0.00 3.69
779 808 9.305555 ACTTCTATGAAATATTGCAGGCATATT 57.694 29.630 1.84 0.00 0.00 1.28
797 826 8.338259 GCCATGTGAGTTACAATTACTTCTATG 58.662 37.037 0.00 0.00 43.77 2.23
802 831 8.807948 ATTAGCCATGTGAGTTACAATTACTT 57.192 30.769 0.00 0.00 43.77 2.24
840 871 8.052141 TGGTCACTTGATATCCAATTGATGTTA 58.948 33.333 7.12 0.00 43.35 2.41
869 900 4.858692 CGCCATCAAACTGAAACCAAATAG 59.141 41.667 0.00 0.00 0.00 1.73
880 911 0.452987 CACCCATCGCCATCAAACTG 59.547 55.000 0.00 0.00 0.00 3.16
881 912 1.315257 GCACCCATCGCCATCAAACT 61.315 55.000 0.00 0.00 0.00 2.66
935 966 0.037232 AAAGGAAGAAGAGGGCGACG 60.037 55.000 0.00 0.00 0.00 5.12
942 973 7.121759 TGCAATGAAGGATTAAAGGAAGAAGAG 59.878 37.037 0.00 0.00 0.00 2.85
1064 1095 0.718904 CGATCGATGGTTGAAACGCA 59.281 50.000 10.26 0.00 0.00 5.24
1065 1096 0.996462 TCGATCGATGGTTGAAACGC 59.004 50.000 15.15 0.00 0.00 4.84
1172 1203 9.321532 AGTGTATCTGTATATACATAAGCCCAA 57.678 33.333 15.81 0.00 42.63 4.12
1173 1204 8.895141 AGTGTATCTGTATATACATAAGCCCA 57.105 34.615 15.81 6.13 42.63 5.36
1253 1309 2.224992 ACAGTGGAGAGCAGAGAAGAGA 60.225 50.000 0.00 0.00 0.00 3.10
1254 1310 2.164219 GACAGTGGAGAGCAGAGAAGAG 59.836 54.545 0.00 0.00 0.00 2.85
1255 1311 2.166829 GACAGTGGAGAGCAGAGAAGA 58.833 52.381 0.00 0.00 0.00 2.87
1256 1312 1.204467 GGACAGTGGAGAGCAGAGAAG 59.796 57.143 0.00 0.00 0.00 2.85
1257 1313 1.261480 GGACAGTGGAGAGCAGAGAA 58.739 55.000 0.00 0.00 0.00 2.87
1258 1314 0.113190 TGGACAGTGGAGAGCAGAGA 59.887 55.000 0.00 0.00 0.00 3.10
1259 1315 0.246086 GTGGACAGTGGAGAGCAGAG 59.754 60.000 0.00 0.00 0.00 3.35
1260 1316 1.527433 CGTGGACAGTGGAGAGCAGA 61.527 60.000 0.00 0.00 0.00 4.26
1261 1317 1.080230 CGTGGACAGTGGAGAGCAG 60.080 63.158 0.00 0.00 0.00 4.24
1262 1318 1.112916 TTCGTGGACAGTGGAGAGCA 61.113 55.000 0.00 0.00 0.00 4.26
1278 1334 4.717629 TCGTGCTCCCGCTGTTCG 62.718 66.667 0.00 0.00 36.97 3.95
1286 1342 1.807142 CTTTTTCTCCTTCGTGCTCCC 59.193 52.381 0.00 0.00 0.00 4.30
1298 1354 6.472016 ACATCTTCTTCCTCCTCTTTTTCTC 58.528 40.000 0.00 0.00 0.00 2.87
1405 1461 1.979308 AGGATGATGAGCAGGATGAGG 59.021 52.381 0.00 0.00 39.69 3.86
1421 1477 0.753479 ACGAGCCAGACGATGAGGAT 60.753 55.000 0.00 0.00 34.70 3.24
1603 1659 1.140375 CCCCTTGTACTCGGCGTAC 59.860 63.158 6.85 3.49 46.94 3.67
1672 1728 2.257676 GACCACACCGAGACGTCC 59.742 66.667 13.01 2.76 0.00 4.79
1762 1818 2.342279 GTGAGCAGCACGTACCCA 59.658 61.111 0.00 0.00 37.83 4.51
1825 1881 1.683365 GAGGTGGTAGTGCCCCGTA 60.683 63.158 0.00 0.00 36.04 4.02
1828 1884 3.782443 CGGAGGTGGTAGTGCCCC 61.782 72.222 0.00 0.00 36.04 5.80
1924 1980 0.438830 CGCGCTGGAAGTTGAAGTAC 59.561 55.000 5.56 0.00 35.30 2.73
1978 2034 2.736826 GCGAGGGAGGGAAGGGAAG 61.737 68.421 0.00 0.00 0.00 3.46
1982 2038 0.393132 GAAAAGCGAGGGAGGGAAGG 60.393 60.000 0.00 0.00 0.00 3.46
1985 2041 2.656069 CGGAAAAGCGAGGGAGGGA 61.656 63.158 0.00 0.00 0.00 4.20
1986 2042 2.125106 CGGAAAAGCGAGGGAGGG 60.125 66.667 0.00 0.00 0.00 4.30
1987 2043 1.741770 CACGGAAAAGCGAGGGAGG 60.742 63.158 0.00 0.00 0.00 4.30
1988 2044 2.391389 GCACGGAAAAGCGAGGGAG 61.391 63.158 0.00 0.00 0.00 4.30
1992 2048 1.021390 AGATGGCACGGAAAAGCGAG 61.021 55.000 0.00 0.00 0.00 5.03
1993 2049 1.003839 AGATGGCACGGAAAAGCGA 60.004 52.632 0.00 0.00 0.00 4.93
1994 2050 1.135315 CAGATGGCACGGAAAAGCG 59.865 57.895 0.00 0.00 0.00 4.68
1995 2051 1.153958 GCAGATGGCACGGAAAAGC 60.154 57.895 0.00 0.00 43.97 3.51
1996 2052 1.243342 TGGCAGATGGCACGGAAAAG 61.243 55.000 4.78 0.00 46.12 2.27
1997 2053 1.228398 TGGCAGATGGCACGGAAAA 60.228 52.632 4.78 0.00 46.12 2.29
1998 2054 2.433888 TGGCAGATGGCACGGAAA 59.566 55.556 4.78 0.00 46.12 3.13
2005 2061 2.113860 TAACAGAGTTGGCAGATGGC 57.886 50.000 0.00 0.00 43.74 4.40
2006 2062 4.321230 GGTTTTAACAGAGTTGGCAGATGG 60.321 45.833 0.00 0.00 0.00 3.51
2007 2063 4.278170 TGGTTTTAACAGAGTTGGCAGATG 59.722 41.667 0.00 0.00 0.00 2.90
2008 2064 4.469657 TGGTTTTAACAGAGTTGGCAGAT 58.530 39.130 0.00 0.00 0.00 2.90
2009 2065 3.882888 CTGGTTTTAACAGAGTTGGCAGA 59.117 43.478 0.00 0.00 38.20 4.26
2010 2066 3.882888 TCTGGTTTTAACAGAGTTGGCAG 59.117 43.478 0.00 0.00 39.87 4.85
2011 2067 3.892284 TCTGGTTTTAACAGAGTTGGCA 58.108 40.909 0.00 0.00 39.87 4.92
2018 2074 1.519408 GGCGCTCTGGTTTTAACAGA 58.481 50.000 7.64 0.00 42.31 3.41
2019 2075 0.521735 GGGCGCTCTGGTTTTAACAG 59.478 55.000 7.64 0.00 37.30 3.16
2020 2076 0.109723 AGGGCGCTCTGGTTTTAACA 59.890 50.000 10.28 0.00 0.00 2.41
2021 2077 1.244816 AAGGGCGCTCTGGTTTTAAC 58.755 50.000 12.52 0.00 0.00 2.01
2022 2078 1.989706 AAAGGGCGCTCTGGTTTTAA 58.010 45.000 12.52 0.00 0.00 1.52
2023 2079 1.611491 CAAAAGGGCGCTCTGGTTTTA 59.389 47.619 12.52 0.00 0.00 1.52
2024 2080 0.389025 CAAAAGGGCGCTCTGGTTTT 59.611 50.000 12.52 4.76 0.00 2.43
2025 2081 1.463553 CCAAAAGGGCGCTCTGGTTT 61.464 55.000 12.52 5.68 0.00 3.27
2026 2082 1.903404 CCAAAAGGGCGCTCTGGTT 60.903 57.895 12.52 5.40 0.00 3.67
2027 2083 2.282462 CCAAAAGGGCGCTCTGGT 60.282 61.111 12.52 0.00 0.00 4.00
2028 2084 1.866853 GAACCAAAAGGGCGCTCTGG 61.867 60.000 12.52 22.98 42.05 3.86
2029 2085 0.890996 AGAACCAAAAGGGCGCTCTG 60.891 55.000 12.52 0.00 42.05 3.35
2030 2086 0.890996 CAGAACCAAAAGGGCGCTCT 60.891 55.000 2.34 2.34 42.05 4.09
2031 2087 1.581447 CAGAACCAAAAGGGCGCTC 59.419 57.895 7.64 1.48 42.05 5.03
2034 2090 1.286880 CAGCAGAACCAAAAGGGCG 59.713 57.895 0.00 0.00 42.05 6.13
2057 2113 7.731054 AGCAGAGTATAAATAGTTTGAGGGAG 58.269 38.462 0.74 0.00 0.00 4.30
2063 2119 7.925483 AGAGCAGAGCAGAGTATAAATAGTTTG 59.075 37.037 0.00 0.00 0.00 2.93
2070 2126 3.703556 AGCAGAGCAGAGCAGAGTATAAA 59.296 43.478 0.00 0.00 0.00 1.40
2074 2131 1.102154 GAGCAGAGCAGAGCAGAGTA 58.898 55.000 0.00 0.00 0.00 2.59
2075 2132 0.612732 AGAGCAGAGCAGAGCAGAGT 60.613 55.000 0.00 0.00 0.00 3.24
2076 2133 0.179121 CAGAGCAGAGCAGAGCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
2077 2134 1.891616 CAGAGCAGAGCAGAGCAGA 59.108 57.895 0.00 0.00 0.00 4.26
2078 2135 1.812093 GCAGAGCAGAGCAGAGCAG 60.812 63.158 0.00 0.00 0.00 4.24
2079 2136 2.228389 GAGCAGAGCAGAGCAGAGCA 62.228 60.000 0.00 0.00 0.00 4.26
2080 2137 1.519898 GAGCAGAGCAGAGCAGAGC 60.520 63.158 0.00 0.00 0.00 4.09
2081 2138 1.142314 GGAGCAGAGCAGAGCAGAG 59.858 63.158 0.00 0.00 0.00 3.35
2082 2139 2.708865 CGGAGCAGAGCAGAGCAGA 61.709 63.158 0.00 0.00 0.00 4.26
2083 2140 2.202770 CGGAGCAGAGCAGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
2084 2141 3.767806 CCGGAGCAGAGCAGAGCA 61.768 66.667 0.00 0.00 0.00 4.26
2142 2203 6.008331 AGAAGTACCCCAAAATACAAGAACC 58.992 40.000 0.00 0.00 0.00 3.62
2151 2214 5.650283 TCCATCAAAGAAGTACCCCAAAAT 58.350 37.500 0.00 0.00 0.00 1.82
2229 2299 5.539048 AGATACAACACTAGCAACGACTTT 58.461 37.500 0.00 0.00 0.00 2.66
2262 2332 2.921126 CTTCTGTAAAAGCAAGCACGG 58.079 47.619 0.00 0.00 0.00 4.94
2277 2347 4.836825 TCCCTGATTAAACTCTGCTTCTG 58.163 43.478 0.00 0.00 0.00 3.02
2357 2430 3.481453 GCCAAGAGGGGAAGATCATTAC 58.519 50.000 0.00 0.00 37.04 1.89
2393 2467 7.440856 ACATTTTCTTTCATTATTTGCCAACGT 59.559 29.630 0.00 0.00 0.00 3.99
2431 2505 2.564947 ACTATTCGATGAGGAGGCCATC 59.435 50.000 5.01 0.00 37.60 3.51
2432 2506 2.614259 ACTATTCGATGAGGAGGCCAT 58.386 47.619 5.01 0.00 0.00 4.40
2433 2507 2.088104 ACTATTCGATGAGGAGGCCA 57.912 50.000 5.01 0.00 0.00 5.36
2434 2508 3.511934 ACATACTATTCGATGAGGAGGCC 59.488 47.826 0.00 0.00 0.00 5.19
2435 2509 4.792521 ACATACTATTCGATGAGGAGGC 57.207 45.455 0.00 0.00 0.00 4.70
2436 2510 6.819397 TGTACATACTATTCGATGAGGAGG 57.181 41.667 0.00 0.00 0.00 4.30
2437 2511 6.749578 GCATGTACATACTATTCGATGAGGAG 59.250 42.308 8.32 0.00 0.00 3.69
2438 2512 6.208599 TGCATGTACATACTATTCGATGAGGA 59.791 38.462 8.32 0.00 0.00 3.71
2476 2553 7.254658 GGAAAAGACACAAATACTGAACGAGAA 60.255 37.037 0.00 0.00 0.00 2.87
2485 2562 3.751698 GCTCCGGAAAAGACACAAATACT 59.248 43.478 5.23 0.00 0.00 2.12
2503 2580 1.379044 CACACCCAAGGATGGCTCC 60.379 63.158 0.00 0.00 46.09 4.70
2510 2587 1.628340 CATCCTACACACACCCAAGGA 59.372 52.381 0.00 0.00 40.50 3.36
2516 2593 1.001974 TGACTGCATCCTACACACACC 59.998 52.381 0.00 0.00 0.00 4.16
2517 2594 2.341257 CTGACTGCATCCTACACACAC 58.659 52.381 0.00 0.00 0.00 3.82
2522 2599 0.909133 TGGCCTGACTGCATCCTACA 60.909 55.000 3.32 0.00 0.00 2.74
2555 2635 0.035343 GGGGCCGGATAAGATAAGGC 60.035 60.000 5.05 0.00 46.51 4.35
2558 2638 0.971386 GACGGGGCCGGATAAGATAA 59.029 55.000 18.95 0.00 44.69 1.75
2585 2665 1.470805 GCTTGGTTTGTCCGTTTTGCT 60.471 47.619 0.00 0.00 39.52 3.91
2638 2718 1.528309 AGCCCGGACACAAAACAGG 60.528 57.895 0.73 0.00 0.00 4.00
2656 2736 1.130373 GTTTGCGCTCGAAATGGATCA 59.870 47.619 9.73 0.00 0.00 2.92
2822 2902 3.368116 CCATTTAAGAAGGACGACGACCT 60.368 47.826 13.25 13.25 39.69 3.85
2860 2940 2.048503 GGGAAGTGTGGACGACGG 60.049 66.667 0.00 0.00 0.00 4.79
2932 3015 2.552768 CGACGAGGACAACGACGA 59.447 61.111 0.00 0.00 46.85 4.20
2972 3056 3.186047 CCTTGCGGCCGTAGTTCG 61.186 66.667 28.70 11.59 39.52 3.95
3002 3086 1.839296 GAGGAGGAGCCGGCCTAAT 60.839 63.158 26.15 3.43 43.43 1.73
3004 3088 4.896829 CGAGGAGGAGCCGGCCTA 62.897 72.222 26.15 0.00 43.43 3.93
3029 3113 2.558554 CTTCTTCACGGATCCGCGGT 62.559 60.000 33.62 12.40 44.19 5.68
3330 3414 1.672881 GCGTACCTGTGGTCGTAGTAT 59.327 52.381 0.00 0.00 37.09 2.12
3366 3450 3.410628 TGGAGCCATGCGTCCCAT 61.411 61.111 8.65 0.00 31.04 4.00
3373 3457 2.202987 CTCGTCCTGGAGCCATGC 60.203 66.667 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.