Multiple sequence alignment - TraesCS7B01G227400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G227400 chr7B 100.000 8370 0 0 1 8370 427698600 427706969 0.000000e+00 15457.0
1 TraesCS7B01G227400 chr7B 100.000 78 0 0 8058 8135 427706618 427706695 2.430000e-30 145.0
2 TraesCS7B01G227400 chr7B 100.000 78 0 0 8019 8096 427706657 427706734 2.430000e-30 145.0
3 TraesCS7B01G227400 chr7B 97.917 48 1 0 4132 4179 427702692 427702739 5.380000e-12 84.2
4 TraesCS7B01G227400 chr7B 97.917 48 1 0 4093 4140 427702731 427702778 5.380000e-12 84.2
5 TraesCS7B01G227400 chr7B 85.526 76 9 2 2561 2634 128260433 128260508 2.500000e-10 78.7
6 TraesCS7B01G227400 chr7B 100.000 39 0 0 8097 8135 427706618 427706656 1.170000e-08 73.1
7 TraesCS7B01G227400 chr7B 100.000 39 0 0 8019 8057 427706696 427706734 1.170000e-08 73.1
8 TraesCS7B01G227400 chr7D 94.449 3531 126 32 4549 8062 413235795 413239272 0.000000e+00 5371.0
9 TraesCS7B01G227400 chr7D 92.110 1597 69 11 1601 3165 413233075 413234646 0.000000e+00 2198.0
10 TraesCS7B01G227400 chr7D 97.660 812 18 1 3330 4140 413234648 413235459 0.000000e+00 1393.0
11 TraesCS7B01G227400 chr7D 91.280 1055 36 12 390 1412 413231649 413232679 0.000000e+00 1387.0
12 TraesCS7B01G227400 chr7D 96.183 393 13 1 4132 4522 413235412 413235804 7.080000e-180 641.0
13 TraesCS7B01G227400 chr7D 91.499 447 32 6 1 445 413231232 413231674 2.000000e-170 610.0
14 TraesCS7B01G227400 chr7D 85.317 252 26 10 8099 8347 413239234 413239477 5.020000e-62 250.0
15 TraesCS7B01G227400 chr7D 89.130 184 19 1 1412 1594 413232708 413232891 2.350000e-55 228.0
16 TraesCS7B01G227400 chr7D 74.432 176 34 9 277 444 471213461 471213289 1.950000e-06 65.8
17 TraesCS7B01G227400 chr7D 92.857 42 3 0 1520 1561 382119476 382119517 2.520000e-05 62.1
18 TraesCS7B01G227400 chr7A 94.022 2944 125 22 5126 8057 474734242 474737146 0.000000e+00 4414.0
19 TraesCS7B01G227400 chr7A 94.775 1780 69 7 1412 3168 474730652 474732430 0.000000e+00 2750.0
20 TraesCS7B01G227400 chr7A 94.255 1027 43 10 4132 5145 474733210 474734233 0.000000e+00 1555.0
21 TraesCS7B01G227400 chr7A 92.850 1007 33 7 424 1414 474729629 474730612 0.000000e+00 1424.0
22 TraesCS7B01G227400 chr7A 94.210 829 30 4 3330 4140 474732429 474733257 0.000000e+00 1249.0
23 TraesCS7B01G227400 chr7A 84.580 441 36 15 1 415 474728825 474729259 7.820000e-110 409.0
24 TraesCS7B01G227400 chr7A 93.304 224 13 1 8098 8319 474737109 474737332 6.260000e-86 329.0
25 TraesCS7B01G227400 chr7A 87.500 80 7 3 2567 2645 678144207 678144130 1.160000e-13 89.8
26 TraesCS7B01G227400 chr5A 97.143 175 5 0 3164 3338 290391864 290391690 6.350000e-76 296.0
27 TraesCS7B01G227400 chr5A 84.146 82 9 1 1562 1639 436093009 436092928 9.010000e-10 76.8
28 TraesCS7B01G227400 chr2D 97.647 170 4 0 3165 3334 560959483 560959652 8.220000e-75 292.0
29 TraesCS7B01G227400 chr2D 95.349 43 1 1 1517 1559 596264760 596264719 5.420000e-07 67.6
30 TraesCS7B01G227400 chr2D 100.000 32 0 0 2537 2568 220958723 220958692 9.070000e-05 60.2
31 TraesCS7B01G227400 chr4D 96.591 176 5 1 3163 3338 93338210 93338036 2.960000e-74 291.0
32 TraesCS7B01G227400 chr4D 97.087 103 3 0 8208 8310 472487441 472487543 3.110000e-39 174.0
33 TraesCS7B01G227400 chr4D 97.222 36 1 0 2532 2567 179860348 179860383 2.520000e-05 62.1
34 TraesCS7B01G227400 chr3D 95.604 182 6 2 3154 3334 591102589 591102409 2.960000e-74 291.0
35 TraesCS7B01G227400 chr3D 93.782 193 8 3 3167 3356 360695992 360695801 3.820000e-73 287.0
36 TraesCS7B01G227400 chr3D 89.062 128 12 2 8210 8336 410301793 410301667 3.130000e-34 158.0
37 TraesCS7B01G227400 chr3D 90.698 43 4 0 2525 2567 47480694 47480736 3.260000e-04 58.4
38 TraesCS7B01G227400 chr1D 96.571 175 6 0 3161 3335 178466300 178466474 2.960000e-74 291.0
39 TraesCS7B01G227400 chr1D 92.683 123 6 3 8205 8326 379472584 379472704 3.110000e-39 174.0
40 TraesCS7B01G227400 chr1D 94.068 118 2 5 8207 8322 409318560 409318446 3.110000e-39 174.0
41 TraesCS7B01G227400 chr1D 100.000 31 0 0 1521 1551 12319081 12319051 3.260000e-04 58.4
42 TraesCS7B01G227400 chr3B 96.532 173 6 0 3162 3334 62970100 62969928 3.820000e-73 287.0
43 TraesCS7B01G227400 chr3B 100.000 32 0 0 2537 2568 732908194 732908163 9.070000e-05 60.2
44 TraesCS7B01G227400 chr3A 94.565 184 9 1 3158 3340 596110385 596110568 4.950000e-72 283.0
45 TraesCS7B01G227400 chr3A 85.526 76 5 2 1565 1640 696374373 696374304 3.240000e-09 75.0
46 TraesCS7B01G227400 chr1A 93.684 190 8 4 3163 3349 233421510 233421322 1.780000e-71 281.0
47 TraesCS7B01G227400 chr1A 93.333 120 5 3 8208 8326 480566327 480566444 3.110000e-39 174.0
48 TraesCS7B01G227400 chr1A 85.526 76 10 1 1562 1636 60355378 60355453 2.500000e-10 78.7
49 TraesCS7B01G227400 chr1A 97.500 40 1 0 1520 1559 13751128 13751089 1.510000e-07 69.4
50 TraesCS7B01G227400 chr1A 88.136 59 6 1 2562 2619 551198391 551198449 1.510000e-07 69.4
51 TraesCS7B01G227400 chr4B 95.575 113 3 2 8206 8316 562056489 562056601 6.670000e-41 180.0
52 TraesCS7B01G227400 chr4B 100.000 33 0 0 2535 2567 322674106 322674074 2.520000e-05 62.1
53 TraesCS7B01G227400 chr4B 97.143 35 0 1 2533 2567 322745775 322745742 3.260000e-04 58.4
54 TraesCS7B01G227400 chr1B 92.500 120 2 6 8207 8322 551040508 551040392 1.870000e-36 165.0
55 TraesCS7B01G227400 chr1B 86.486 74 8 1 1564 1635 407306679 407306606 6.960000e-11 80.5
56 TraesCS7B01G227400 chr1B 85.333 75 7 2 1563 1634 407306606 407306679 3.240000e-09 75.0
57 TraesCS7B01G227400 chrUn 89.041 73 6 2 2563 2634 132120740 132120811 1.160000e-13 89.8
58 TraesCS7B01G227400 chr6B 88.732 71 6 2 2565 2633 478909230 478909160 1.500000e-12 86.1
59 TraesCS7B01G227400 chr4A 82.979 94 13 2 1552 1642 634836849 634836942 1.940000e-11 82.4
60 TraesCS7B01G227400 chr4A 100.000 31 0 0 2535 2565 684902771 684902741 3.260000e-04 58.4
61 TraesCS7B01G227400 chr5B 91.525 59 4 1 2562 2619 329151256 329151314 6.960000e-11 80.5
62 TraesCS7B01G227400 chr5B 95.000 40 2 0 1514 1553 2626947 2626986 7.010000e-06 63.9
63 TraesCS7B01G227400 chr6A 90.000 60 4 2 2561 2618 45023861 45023920 9.010000e-10 76.8
64 TraesCS7B01G227400 chr2B 95.652 46 2 0 1516 1561 435529595 435529640 3.240000e-09 75.0
65 TraesCS7B01G227400 chr2B 100.000 28 0 0 2610 2637 313848494 313848521 1.500000e-02 52.8
66 TraesCS7B01G227400 chr2A 83.133 83 11 1 1556 1635 632593124 632593206 1.170000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G227400 chr7B 427698600 427706969 8369 False 15457.000000 15457 100.000000 1 8370 1 chr7B.!!$F2 8369
1 TraesCS7B01G227400 chr7D 413231232 413239477 8245 False 1509.750000 5371 92.203500 1 8347 8 chr7D.!!$F2 8346
2 TraesCS7B01G227400 chr7A 474728825 474737332 8507 False 1732.857143 4414 92.570857 1 8319 7 chr7A.!!$F1 8318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 1290 0.037303 CTGCTTGCCCTTCTTCTCCA 59.963 55.000 0.00 0.0 0.00 3.86 F
893 1291 0.700564 TGCTTGCCCTTCTTCTCCAT 59.299 50.000 0.00 0.0 0.00 3.41 F
1792 2437 1.135083 CACCGACACCACAGGATCTAC 60.135 57.143 0.00 0.0 0.00 2.59 F
1793 2438 1.182667 CCGACACCACAGGATCTACA 58.817 55.000 0.00 0.0 0.00 2.74 F
2946 3627 1.428448 TTGTGAAATCGACTGGAGCG 58.572 50.000 0.00 0.0 0.00 5.03 F
3430 4111 0.109723 GCCACACTAGGGTCCAACAA 59.890 55.000 0.00 0.0 0.00 2.83 F
3583 4264 1.737838 CAGGCTTTCTGCGACCATTA 58.262 50.000 0.00 0.0 44.05 1.90 F
4944 5654 0.679960 AGGGCTAAATTGCGGTGACC 60.680 55.000 0.00 0.0 0.00 4.02 F
6080 6828 0.324091 TCGGTCTACCTGGTCCTTCC 60.324 60.000 0.63 1.4 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 2350 2.297698 TTCAGAGTCGGGACTGGTAA 57.702 50.000 5.98 0.0 42.66 2.85 R
2533 3203 2.413634 CCGCGACACTTATTTTGGAACC 60.414 50.000 8.23 0.0 0.00 3.62 R
2946 3627 0.251165 TTTTCCCCCACTGCTAGCAC 60.251 55.000 14.93 0.0 0.00 4.40 R
2948 3629 0.328258 TCTTTTCCCCCACTGCTAGC 59.672 55.000 8.10 8.1 0.00 3.42 R
4900 5610 0.181350 GTCTGTTAGGCAGGATGGGG 59.819 60.000 0.00 0.0 45.08 4.96 R
4944 5654 1.153349 GGGACTGCTTAGGCTTCCG 60.153 63.158 10.57 0.0 40.16 4.30 R
5367 6107 1.757118 TCTCAGGACCAATAGCTTCGG 59.243 52.381 0.00 0.0 0.00 4.30 R
6395 7143 0.107703 GTGGCCGATTCATCACTCCA 60.108 55.000 0.00 0.0 0.00 3.86 R
7689 8442 0.180171 CCGGTATGGTGCAAGGATGA 59.820 55.000 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 9.628500 AGTTTGAAAACAAATAGTAGTCCTCTT 57.372 29.630 8.53 0.00 41.30 2.85
87 89 4.774124 TCTTGATAGATGCCACTTTCAGG 58.226 43.478 0.00 0.00 31.80 3.86
97 99 2.353803 GCCACTTTCAGGTAGACGATGT 60.354 50.000 0.00 0.00 0.00 3.06
119 121 9.906660 GATGTATAAGACAACCAACAAAAATGA 57.093 29.630 0.00 0.00 42.78 2.57
196 198 4.105217 TGGCCATCAGATCAATATCCAACT 59.895 41.667 0.00 0.00 31.98 3.16
201 203 6.769341 CCATCAGATCAATATCCAACTGTCAA 59.231 38.462 0.00 0.00 31.98 3.18
211 213 2.040145 TCCAACTGTCAAGATCATGCCA 59.960 45.455 0.00 0.00 0.00 4.92
230 232 0.620556 ACGGCATGTTCATCCTCCTT 59.379 50.000 0.00 0.00 0.00 3.36
268 270 1.382146 CCTAACCGCCTACCTCCCA 60.382 63.158 0.00 0.00 0.00 4.37
270 272 2.012902 CTAACCGCCTACCTCCCACG 62.013 65.000 0.00 0.00 0.00 4.94
316 344 1.063190 TCTACCTCCCCATCATCGTGT 60.063 52.381 0.00 0.00 0.00 4.49
408 436 5.725338 CCCCCTTACCCCTAAGATAGATAAC 59.275 48.000 0.00 0.00 32.29 1.89
418 476 6.039941 CCCTAAGATAGATAACGAGGCTATGG 59.960 46.154 0.00 0.00 0.00 2.74
464 852 2.022240 GCCTCTTCTCCGGCGAGATT 62.022 60.000 9.30 0.00 44.68 2.40
476 864 1.482593 GGCGAGATTCCTTCTTCTCCA 59.517 52.381 0.00 0.00 35.93 3.86
504 898 4.184629 CTCGGATGAACTAGAAAAGGTGG 58.815 47.826 0.00 0.00 0.00 4.61
505 899 3.835978 TCGGATGAACTAGAAAAGGTGGA 59.164 43.478 0.00 0.00 0.00 4.02
523 917 4.329801 GGTGGATGGCGAAATGAAAAATTC 59.670 41.667 0.00 0.00 0.00 2.17
525 919 3.551485 GGATGGCGAAATGAAAAATTCCG 59.449 43.478 0.00 0.00 0.00 4.30
658 1053 1.376683 CCCTCGCCGGAATTTGTCA 60.377 57.895 5.05 0.00 33.16 3.58
662 1057 0.594110 TCGCCGGAATTTGTCAAACC 59.406 50.000 5.05 0.00 0.00 3.27
663 1058 0.312416 CGCCGGAATTTGTCAAACCA 59.688 50.000 5.05 0.00 0.00 3.67
665 1060 1.339929 GCCGGAATTTGTCAAACCACT 59.660 47.619 5.05 0.00 0.00 4.00
666 1061 2.607038 GCCGGAATTTGTCAAACCACTC 60.607 50.000 5.05 0.00 0.00 3.51
668 1063 2.661594 GGAATTTGTCAAACCACTCGC 58.338 47.619 0.00 0.00 0.00 5.03
669 1064 2.607038 GGAATTTGTCAAACCACTCGCC 60.607 50.000 0.00 0.00 0.00 5.54
670 1065 0.591170 ATTTGTCAAACCACTCGCCG 59.409 50.000 0.00 0.00 0.00 6.46
671 1066 1.440938 TTTGTCAAACCACTCGCCGG 61.441 55.000 0.00 0.00 0.00 6.13
672 1067 2.029964 GTCAAACCACTCGCCGGA 59.970 61.111 5.05 0.00 0.00 5.14
673 1068 1.595929 GTCAAACCACTCGCCGGAA 60.596 57.895 5.05 0.00 0.00 4.30
674 1069 1.301401 TCAAACCACTCGCCGGAAG 60.301 57.895 5.05 3.72 0.00 3.46
687 1082 1.221021 CGGAAGGGGGTCTAACTGC 59.779 63.158 0.00 0.00 0.00 4.40
688 1083 1.608154 GGAAGGGGGTCTAACTGCC 59.392 63.158 0.00 0.00 0.00 4.85
689 1084 1.221021 GAAGGGGGTCTAACTGCCG 59.779 63.158 0.00 0.00 0.00 5.69
690 1085 1.538135 AAGGGGGTCTAACTGCCGT 60.538 57.895 0.00 0.00 0.00 5.68
736 1131 3.398353 GACCTCGGGAAGCTCGTCG 62.398 68.421 0.00 0.00 0.00 5.12
890 1288 2.416680 ATCTGCTTGCCCTTCTTCTC 57.583 50.000 0.00 0.00 0.00 2.87
892 1290 0.037303 CTGCTTGCCCTTCTTCTCCA 59.963 55.000 0.00 0.00 0.00 3.86
893 1291 0.700564 TGCTTGCCCTTCTTCTCCAT 59.299 50.000 0.00 0.00 0.00 3.41
914 1318 2.242196 TCCTTCCCAGTCCAATCCAATC 59.758 50.000 0.00 0.00 0.00 2.67
987 1391 1.303317 GGCCGGCTCAAAGAAGGAA 60.303 57.895 28.56 0.00 0.00 3.36
992 1396 1.745653 CGGCTCAAAGAAGGAATTCCC 59.254 52.381 21.22 6.75 36.42 3.97
1414 1833 2.208872 ACCCTGGATGGATAGCTTGTT 58.791 47.619 0.00 0.00 38.35 2.83
1415 1834 2.092212 ACCCTGGATGGATAGCTTGTTG 60.092 50.000 0.00 0.00 38.35 3.33
1416 1835 2.173356 CCCTGGATGGATAGCTTGTTGA 59.827 50.000 0.00 0.00 38.35 3.18
1456 1917 5.163854 GCAAACAGCTAGTGTGGTGTATTAG 60.164 44.000 8.09 0.00 46.25 1.73
1494 1955 1.327303 TTTGGCTGGATTGGACACAC 58.673 50.000 0.00 0.00 0.00 3.82
1498 1960 1.686052 GGCTGGATTGGACACACAAAA 59.314 47.619 0.00 0.00 33.48 2.44
1598 2060 8.853345 CATATTAATTGTCGCTGATTTATTGCC 58.147 33.333 0.00 0.00 0.00 4.52
1606 2245 6.202762 TGTCGCTGATTTATTGCCATACTAAG 59.797 38.462 0.00 0.00 0.00 2.18
1615 2254 1.202256 TGCCATACTAAGTCAGCGACG 60.202 52.381 0.00 0.00 37.67 5.12
1636 2275 4.905456 ACGATTAGTATGGATTGGAGGGAA 59.095 41.667 0.00 0.00 0.00 3.97
1640 2279 4.917906 AGTATGGATTGGAGGGAATAGC 57.082 45.455 0.00 0.00 0.00 2.97
1651 2290 4.462483 TGGAGGGAATAGCATTTTCACAAC 59.538 41.667 0.00 0.00 0.00 3.32
1677 2316 1.141657 TGATCTACCTTGATGGGCAGC 59.858 52.381 0.00 0.00 41.11 5.25
1792 2437 1.135083 CACCGACACCACAGGATCTAC 60.135 57.143 0.00 0.00 0.00 2.59
1793 2438 1.182667 CCGACACCACAGGATCTACA 58.817 55.000 0.00 0.00 0.00 2.74
1831 2476 5.390567 GGTCATTCACTTCAAATCGTACCAC 60.391 44.000 0.00 0.00 0.00 4.16
2132 2802 3.150767 CCGGGTAAAGAAACATGACCAA 58.849 45.455 0.00 0.00 31.41 3.67
2433 3103 6.875948 TGTTGTGCATAGTGTTTGACTATT 57.124 33.333 0.00 0.00 44.26 1.73
2504 3174 6.005823 TGACTACAACTACTACCTGCTTACA 58.994 40.000 0.00 0.00 0.00 2.41
2533 3203 3.114065 GACGCTATGAACTACCCTTTCG 58.886 50.000 0.00 0.00 0.00 3.46
2552 3222 2.481185 TCGGTTCCAAAATAAGTGTCGC 59.519 45.455 0.00 0.00 0.00 5.19
2577 3247 7.221259 GCGGTTTTAGTTCAAAATAAGTGTTGT 59.779 33.333 0.00 0.00 38.36 3.32
2586 3256 9.361315 GTTCAAAATAAGTGTTGTGGTTTTAGT 57.639 29.630 0.00 0.00 0.00 2.24
2596 3266 9.361315 AGTGTTGTGGTTTTAGTTTAAATTGAC 57.639 29.630 0.00 0.00 0.00 3.18
2911 3592 5.394224 CCTCGGAGAAAATACTTGAGCTACA 60.394 44.000 6.58 0.00 34.09 2.74
2913 3594 4.268884 CGGAGAAAATACTTGAGCTACAGC 59.731 45.833 0.00 0.00 42.49 4.40
2944 3625 3.372206 GTGGATTGTGAAATCGACTGGAG 59.628 47.826 6.41 0.00 35.75 3.86
2946 3627 1.428448 TTGTGAAATCGACTGGAGCG 58.572 50.000 0.00 0.00 0.00 5.03
2948 3629 0.716108 GTGAAATCGACTGGAGCGTG 59.284 55.000 0.00 0.00 0.00 5.34
3003 3684 3.995199 TCTGCAGACTTGTAAGAACTGG 58.005 45.455 13.74 8.32 35.93 4.00
3005 3686 4.130118 CTGCAGACTTGTAAGAACTGGTT 58.870 43.478 8.42 0.00 35.93 3.67
3015 3696 5.492895 TGTAAGAACTGGTTGACACTTGAA 58.507 37.500 0.00 0.00 0.00 2.69
3027 3708 6.183360 GGTTGACACTTGAAAGTATATGTCCG 60.183 42.308 8.30 0.00 37.08 4.79
3123 3804 6.276241 GCCTCTGTAGACCTATCTAGGCATT 61.276 48.000 15.53 0.00 46.23 3.56
3166 3847 2.485426 CGTTGGCATTTCACTCACATCT 59.515 45.455 0.00 0.00 0.00 2.90
3167 3848 3.684305 CGTTGGCATTTCACTCACATCTA 59.316 43.478 0.00 0.00 0.00 1.98
3168 3849 4.436050 CGTTGGCATTTCACTCACATCTAC 60.436 45.833 0.00 0.00 0.00 2.59
3169 3850 4.558226 TGGCATTTCACTCACATCTACT 57.442 40.909 0.00 0.00 0.00 2.57
3170 3851 4.507710 TGGCATTTCACTCACATCTACTC 58.492 43.478 0.00 0.00 0.00 2.59
3171 3852 3.873952 GGCATTTCACTCACATCTACTCC 59.126 47.826 0.00 0.00 0.00 3.85
3172 3853 3.873952 GCATTTCACTCACATCTACTCCC 59.126 47.826 0.00 0.00 0.00 4.30
3173 3854 4.383552 GCATTTCACTCACATCTACTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
3174 3855 5.355596 CATTTCACTCACATCTACTCCCTC 58.644 45.833 0.00 0.00 0.00 4.30
3175 3856 3.019799 TCACTCACATCTACTCCCTCC 57.980 52.381 0.00 0.00 0.00 4.30
3176 3857 1.678627 CACTCACATCTACTCCCTCCG 59.321 57.143 0.00 0.00 0.00 4.63
3177 3858 1.285373 ACTCACATCTACTCCCTCCGT 59.715 52.381 0.00 0.00 0.00 4.69
3178 3859 2.291670 ACTCACATCTACTCCCTCCGTT 60.292 50.000 0.00 0.00 0.00 4.44
3179 3860 2.359531 CTCACATCTACTCCCTCCGTTC 59.640 54.545 0.00 0.00 0.00 3.95
3180 3861 1.409427 CACATCTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
3181 3862 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
3182 3863 2.512896 ACATCTACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
3183 3864 3.053095 ACATCTACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
3184 3865 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3185 3866 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3186 3867 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3187 3868 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3188 3869 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3189 3870 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3190 3871 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3191 3872 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3192 3873 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3193 3874 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3194 3875 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3195 3876 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3196 3877 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3197 3878 9.043079 CCTCCGTTCCTAAATATAAGTCTTTTC 57.957 37.037 0.00 0.00 0.00 2.29
3198 3879 9.595823 CTCCGTTCCTAAATATAAGTCTTTTCA 57.404 33.333 0.00 0.00 0.00 2.69
3199 3880 9.595823 TCCGTTCCTAAATATAAGTCTTTTCAG 57.404 33.333 0.00 0.00 0.00 3.02
3200 3881 9.595823 CCGTTCCTAAATATAAGTCTTTTCAGA 57.404 33.333 0.00 0.00 0.00 3.27
3213 3894 8.469309 AAGTCTTTTCAGAGATTTCAAATGGA 57.531 30.769 0.00 0.00 0.00 3.41
3214 3895 8.647256 AGTCTTTTCAGAGATTTCAAATGGAT 57.353 30.769 0.00 0.00 0.00 3.41
3215 3896 9.086758 AGTCTTTTCAGAGATTTCAAATGGATT 57.913 29.630 0.00 0.00 0.00 3.01
3218 3899 9.578439 CTTTTCAGAGATTTCAAATGGATTACC 57.422 33.333 0.00 0.00 0.00 2.85
3234 3915 7.727578 TGGATTACCACATACGGATGTATAT 57.272 36.000 14.23 4.37 44.82 0.86
3235 3916 8.826293 TGGATTACCACATACGGATGTATATA 57.174 34.615 14.23 3.33 44.82 0.86
3236 3917 8.909923 TGGATTACCACATACGGATGTATATAG 58.090 37.037 14.23 0.00 44.82 1.31
3237 3918 9.128404 GGATTACCACATACGGATGTATATAGA 57.872 37.037 14.23 0.00 44.82 1.98
3238 3919 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
3239 3920 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
3240 3921 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3242 3923 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3271 3952 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3272 3953 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3273 3954 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3274 3955 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3275 3956 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3276 3957 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3277 3958 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3278 3959 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3279 3960 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3280 3961 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3281 3962 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3282 3963 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3283 3964 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3284 3965 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3285 3966 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3286 3967 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3287 3968 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3288 3969 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3289 3970 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3290 3971 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3291 3972 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3292 3973 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3293 3974 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3294 3975 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3295 3976 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3296 3977 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3297 3978 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3298 3979 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3299 3980 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3300 3981 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3301 3982 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3302 3983 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3303 3984 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3304 3985 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3305 3986 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3306 3987 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3307 3988 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3308 3989 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3309 3990 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3322 4003 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3323 4004 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3324 4005 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3325 4006 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3326 4007 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3327 4008 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3328 4009 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3336 4017 4.405756 AGGAACGGAGGGAGTATATGAT 57.594 45.455 0.00 0.00 0.00 2.45
3344 4025 4.472833 GGAGGGAGTATATGATTGGCAGAT 59.527 45.833 0.00 0.00 32.27 2.90
3361 4042 2.774234 CAGATGCCTCCCTTTTCCTCTA 59.226 50.000 0.00 0.00 0.00 2.43
3390 4071 9.661563 AACAATACAAGAATATCGTGAACCTAA 57.338 29.630 0.37 0.00 30.40 2.69
3425 4106 1.299976 CAAGGCCACACTAGGGTCC 59.700 63.158 5.01 0.00 0.00 4.46
3430 4111 0.109723 GCCACACTAGGGTCCAACAA 59.890 55.000 0.00 0.00 0.00 2.83
3583 4264 1.737838 CAGGCTTTCTGCGACCATTA 58.262 50.000 0.00 0.00 44.05 1.90
3673 4354 7.009174 CACGAAAACATCCTTACATTTTATGGC 59.991 37.037 0.00 0.00 33.60 4.40
3783 4481 5.500234 TGCCATGATTGCTACTCTTTAGTT 58.500 37.500 0.00 0.00 37.15 2.24
3847 4545 3.911868 TGATGCAGTACAAAACCATTGC 58.088 40.909 0.00 0.00 0.00 3.56
4017 4716 7.712264 TGAAAATTGTGAAATTTCATCGCTT 57.288 28.000 23.05 13.00 37.95 4.68
4119 4818 2.481952 CTGTTGCTCCTGTTAAGTCTGC 59.518 50.000 0.00 0.00 0.00 4.26
4120 4819 2.104792 TGTTGCTCCTGTTAAGTCTGCT 59.895 45.455 0.00 0.00 0.00 4.24
4121 4820 2.739379 GTTGCTCCTGTTAAGTCTGCTC 59.261 50.000 0.00 0.00 0.00 4.26
4122 4821 1.970640 TGCTCCTGTTAAGTCTGCTCA 59.029 47.619 0.00 0.00 0.00 4.26
4123 4822 2.568956 TGCTCCTGTTAAGTCTGCTCAT 59.431 45.455 0.00 0.00 0.00 2.90
4124 4823 3.769300 TGCTCCTGTTAAGTCTGCTCATA 59.231 43.478 0.00 0.00 0.00 2.15
4125 4824 4.142071 TGCTCCTGTTAAGTCTGCTCATAG 60.142 45.833 0.00 0.00 0.00 2.23
4126 4825 4.367450 CTCCTGTTAAGTCTGCTCATAGC 58.633 47.826 0.00 0.00 42.82 2.97
4127 4826 4.026744 TCCTGTTAAGTCTGCTCATAGCT 58.973 43.478 0.00 0.00 42.97 3.32
4128 4827 4.098654 TCCTGTTAAGTCTGCTCATAGCTC 59.901 45.833 0.00 0.00 42.97 4.09
4129 4828 4.142071 CCTGTTAAGTCTGCTCATAGCTCA 60.142 45.833 0.00 0.00 42.97 4.26
4130 4829 4.748892 TGTTAAGTCTGCTCATAGCTCAC 58.251 43.478 0.00 0.00 42.97 3.51
4131 4830 4.220602 TGTTAAGTCTGCTCATAGCTCACA 59.779 41.667 0.00 0.00 42.97 3.58
4132 4831 3.969287 AAGTCTGCTCATAGCTCACAA 57.031 42.857 0.00 0.00 42.97 3.33
4133 4832 3.244033 AGTCTGCTCATAGCTCACAAC 57.756 47.619 0.00 0.00 42.97 3.32
4134 4833 2.830923 AGTCTGCTCATAGCTCACAACT 59.169 45.455 0.00 0.00 42.97 3.16
4135 4834 3.260380 AGTCTGCTCATAGCTCACAACTT 59.740 43.478 0.00 0.00 42.97 2.66
4136 4835 3.370366 GTCTGCTCATAGCTCACAACTTG 59.630 47.826 0.00 0.00 42.97 3.16
4137 4836 2.079158 TGCTCATAGCTCACAACTTGC 58.921 47.619 0.00 0.00 42.97 4.01
4138 4837 2.289882 TGCTCATAGCTCACAACTTGCT 60.290 45.455 0.00 0.00 42.97 3.91
4139 4838 3.055891 TGCTCATAGCTCACAACTTGCTA 60.056 43.478 0.00 0.00 42.97 3.49
4140 4839 4.125703 GCTCATAGCTCACAACTTGCTAT 58.874 43.478 0.00 0.00 46.90 2.97
4141 4840 4.574013 GCTCATAGCTCACAACTTGCTATT 59.426 41.667 0.00 0.00 44.58 1.73
4142 4841 5.503683 GCTCATAGCTCACAACTTGCTATTG 60.504 44.000 0.00 2.98 44.58 1.90
4143 4842 4.333649 TCATAGCTCACAACTTGCTATTGC 59.666 41.667 0.00 0.00 44.58 3.56
4144 4843 2.787994 AGCTCACAACTTGCTATTGCT 58.212 42.857 0.00 0.00 40.48 3.91
4145 4844 2.746362 AGCTCACAACTTGCTATTGCTC 59.254 45.455 0.00 0.00 40.48 4.26
4146 4845 2.159462 GCTCACAACTTGCTATTGCTCC 60.159 50.000 0.00 0.00 40.48 4.70
4147 4846 3.341823 CTCACAACTTGCTATTGCTCCT 58.658 45.455 0.00 0.00 40.48 3.69
4148 4847 3.076621 TCACAACTTGCTATTGCTCCTG 58.923 45.455 0.00 0.00 40.48 3.86
4149 4848 2.816087 CACAACTTGCTATTGCTCCTGT 59.184 45.455 0.00 0.00 40.48 4.00
4150 4849 3.254166 CACAACTTGCTATTGCTCCTGTT 59.746 43.478 0.00 0.00 40.48 3.16
4151 4850 4.455533 CACAACTTGCTATTGCTCCTGTTA 59.544 41.667 0.00 0.00 40.48 2.41
4152 4851 5.048782 CACAACTTGCTATTGCTCCTGTTAA 60.049 40.000 0.00 0.00 40.48 2.01
4153 4852 5.182001 ACAACTTGCTATTGCTCCTGTTAAG 59.818 40.000 0.00 0.00 40.48 1.85
4154 4853 4.911390 ACTTGCTATTGCTCCTGTTAAGT 58.089 39.130 0.00 0.00 40.48 2.24
4155 4854 4.938226 ACTTGCTATTGCTCCTGTTAAGTC 59.062 41.667 0.00 0.00 40.48 3.01
4156 4855 4.826274 TGCTATTGCTCCTGTTAAGTCT 57.174 40.909 0.00 0.00 40.48 3.24
4157 4856 4.507710 TGCTATTGCTCCTGTTAAGTCTG 58.492 43.478 0.00 0.00 40.48 3.51
4201 4900 4.161001 AGCTTGATGGGCAGGAAAAATAAG 59.839 41.667 0.00 0.00 0.00 1.73
4203 4902 3.711863 TGATGGGCAGGAAAAATAAGCT 58.288 40.909 0.00 0.00 0.00 3.74
4233 4932 7.012799 TGCTATTGTGTTTGACTGTGTAATTGA 59.987 33.333 0.00 0.00 0.00 2.57
4247 4946 5.863935 TGTGTAATTGAATGTGTCTCTCGAG 59.136 40.000 5.93 5.93 0.00 4.04
4399 5100 5.057301 GTCAAATTTTGTTCGAAATTCGCG 58.943 37.500 10.93 0.00 40.21 5.87
4525 5227 5.430886 TGAATCATGTTATGACTCTGGGTG 58.569 41.667 2.55 0.00 43.01 4.61
4528 5230 2.768253 TGTTATGACTCTGGGTGCAG 57.232 50.000 0.00 0.00 0.00 4.41
4717 5420 1.786937 AGCAAACCACCACAATGGAA 58.213 45.000 0.84 0.00 43.02 3.53
4744 5454 6.245115 ACTTTTTGGTGCCGTTATACTTAC 57.755 37.500 0.00 0.00 0.00 2.34
4779 5489 4.022935 CAGGTGCTGAATTTGAACTTAGCA 60.023 41.667 0.00 0.00 38.68 3.49
4820 5530 5.754406 TCCAGAACTTTCGTTAATTTCGTGA 59.246 36.000 0.00 0.00 32.37 4.35
4880 5590 6.654161 CAGAAATGAACTGAAATCTCTGACCT 59.346 38.462 0.00 0.00 37.54 3.85
4881 5591 6.654161 AGAAATGAACTGAAATCTCTGACCTG 59.346 38.462 0.00 0.00 0.00 4.00
4944 5654 0.679960 AGGGCTAAATTGCGGTGACC 60.680 55.000 0.00 0.00 0.00 4.02
5041 5752 9.571810 TTTATTGTGATTGTTGAATGAGTATGC 57.428 29.630 0.00 0.00 0.00 3.14
5080 5791 5.827326 AGCCCACTCTTTCTAGTAAACTT 57.173 39.130 0.00 0.00 0.00 2.66
5227 5967 7.935338 ACACAAGCAAAATGATGTTTTAGAG 57.065 32.000 0.00 0.00 0.00 2.43
5367 6107 6.677781 TGTAGGCATACTTATTCAAACTGC 57.322 37.500 10.25 0.00 32.75 4.40
5552 6292 3.691118 TCACATCTGGCAAACTAGCAATC 59.309 43.478 0.00 0.00 35.83 2.67
5771 6515 8.958119 TTTTGTGTCCCTAAGCATATAAGTAG 57.042 34.615 0.00 0.00 0.00 2.57
5840 6584 4.160439 CCTCAACTGATGTAAGCTCACCTA 59.840 45.833 0.00 0.00 0.00 3.08
5853 6597 4.216708 AGCTCACCTACCTAGTCATTACC 58.783 47.826 0.00 0.00 0.00 2.85
5860 6604 9.584008 TCACCTACCTAGTCATTACCTATTAAG 57.416 37.037 0.00 0.00 0.00 1.85
6079 6827 1.204231 GTTCGGTCTACCTGGTCCTTC 59.796 57.143 0.63 0.00 0.00 3.46
6080 6828 0.324091 TCGGTCTACCTGGTCCTTCC 60.324 60.000 0.63 1.40 0.00 3.46
6081 6829 0.324460 CGGTCTACCTGGTCCTTCCT 60.324 60.000 0.63 0.00 37.07 3.36
6082 6830 1.895866 CGGTCTACCTGGTCCTTCCTT 60.896 57.143 0.63 0.00 37.07 3.36
6100 6848 7.037586 TCCTTCCTTGTTATCTTCTGTACCAAT 60.038 37.037 0.00 0.00 0.00 3.16
6265 7013 8.408601 GCTCTGAATCATTGTGTAACCAATTAT 58.591 33.333 0.00 0.00 32.81 1.28
6298 7046 5.245751 TGCCATAAACATGATTCACAAAGGT 59.754 36.000 0.00 0.00 0.00 3.50
6367 7115 6.801953 TGGGTGGGTTACAAATTAATAAGGA 58.198 36.000 0.00 0.00 0.00 3.36
6369 7117 6.183360 GGGTGGGTTACAAATTAATAAGGAGC 60.183 42.308 0.00 0.00 0.00 4.70
6382 7130 7.715265 TTAATAAGGAGCTATTTCTTCTGCG 57.285 36.000 0.00 0.00 0.00 5.18
6395 7143 4.471904 TCTTCTGCGACTTGTCCATAAT 57.528 40.909 0.00 0.00 0.00 1.28
6496 7244 4.775253 GGGTCCAGGAAAATGGTTTTATGA 59.225 41.667 0.00 0.00 41.43 2.15
6737 7485 8.725148 AGAAGCTCATAAGTGTTGTTTATCTTG 58.275 33.333 0.00 0.00 0.00 3.02
6828 7576 8.333235 TGGGAATTGATTACACTAAAGGTATGT 58.667 33.333 0.00 0.00 0.00 2.29
6861 7609 7.497249 GTCAAATACATCTTGAGCTTACATCCT 59.503 37.037 0.00 0.00 33.56 3.24
6890 7638 8.967664 TGTTTAAACTTCTGTACTATGTTGGT 57.032 30.769 18.72 0.00 0.00 3.67
7002 7750 2.171237 TCAGTGATGTTGGCTATCCCTG 59.829 50.000 0.00 0.00 33.20 4.45
7006 7754 2.107031 TGATGTTGGCTATCCCTGGATG 59.893 50.000 8.97 0.83 36.17 3.51
7014 7762 3.471680 GCTATCCCTGGATGAACTCAAC 58.528 50.000 8.97 0.00 36.17 3.18
7015 7763 3.118261 GCTATCCCTGGATGAACTCAACA 60.118 47.826 8.97 0.00 36.17 3.33
7021 7769 4.080919 CCCTGGATGAACTCAACACTCATA 60.081 45.833 0.00 0.00 29.97 2.15
7038 7786 7.675062 ACACTCATATTAGTTCAGATCCCATC 58.325 38.462 0.00 0.00 0.00 3.51
7113 7861 1.602237 GTTTGGAGATCCCGGCAGA 59.398 57.895 0.00 0.00 37.93 4.26
7167 7915 0.841961 TGCTGGGATGAAGATCCTGG 59.158 55.000 0.00 0.00 46.88 4.45
7304 8052 8.072567 CCAGTCTTCACTTGAGTATTTTCTTTG 58.927 37.037 0.00 0.00 0.00 2.77
7363 8111 4.905295 GCAAAAATGCAAAAGAAATCACCG 59.095 37.500 0.00 0.00 34.41 4.94
7418 8166 7.562454 AAGAAAGAACAGAAAAACCGATGTA 57.438 32.000 0.00 0.00 0.00 2.29
7445 8193 0.539438 AAAGTGATGCAAAGGCCGGA 60.539 50.000 5.05 0.00 40.13 5.14
7512 8264 1.080434 GACTCAAGGAGCGTCGCTT 60.080 57.895 22.67 2.83 39.88 4.68
7516 8268 2.155194 CAAGGAGCGTCGCTTCGAG 61.155 63.158 22.67 13.26 39.54 4.04
7539 8291 8.157813 CGAGTTTAAATTGCTGAAAATGTGATG 58.842 33.333 0.00 0.00 0.00 3.07
7563 8316 0.831288 CCCACAACCATGCCAAAGGA 60.831 55.000 0.00 0.00 0.00 3.36
7630 8383 2.309755 AGGATCAAAGGGCATTGACAGA 59.690 45.455 7.05 0.00 41.78 3.41
7631 8384 3.091545 GGATCAAAGGGCATTGACAGAA 58.908 45.455 7.05 0.00 41.78 3.02
7639 8392 1.337167 GGCATTGACAGAAAACTGGGC 60.337 52.381 0.00 0.00 0.00 5.36
7664 8417 0.465097 CCCTGCTGATAACCTGCCAG 60.465 60.000 0.00 0.00 38.75 4.85
7668 8421 0.253044 GCTGATAACCTGCCAGACCA 59.747 55.000 0.00 0.00 34.12 4.02
7670 8423 2.636830 CTGATAACCTGCCAGACCAAG 58.363 52.381 0.00 0.00 0.00 3.61
7680 8433 1.685224 CAGACCAAGCAGGCCCTTA 59.315 57.895 0.00 0.00 43.14 2.69
7689 8442 1.429299 AGCAGGCCCTTAAGAGGTTTT 59.571 47.619 3.36 0.00 41.85 2.43
7705 8458 3.763897 AGGTTTTCATCCTTGCACCATAC 59.236 43.478 0.00 0.00 30.18 2.39
7803 8556 0.108804 CCGTTGCGTGTGAGATAGGT 60.109 55.000 0.00 0.00 0.00 3.08
7812 8565 4.025647 GCGTGTGAGATAGGTTTAGAATGC 60.026 45.833 0.00 0.00 0.00 3.56
7837 8591 5.119279 CCTCTCGTTTCTCTTTGTATGTGTG 59.881 44.000 0.00 0.00 0.00 3.82
7870 8624 4.981806 TTGTAACAGTTTCTTGCAGCTT 57.018 36.364 0.00 0.00 0.00 3.74
7871 8625 4.291540 TGTAACAGTTTCTTGCAGCTTG 57.708 40.909 0.00 0.00 0.00 4.01
7873 8627 4.878971 TGTAACAGTTTCTTGCAGCTTGTA 59.121 37.500 0.00 0.00 0.00 2.41
7874 8628 4.558538 AACAGTTTCTTGCAGCTTGTAG 57.441 40.909 0.00 0.00 0.00 2.74
7875 8629 3.545703 ACAGTTTCTTGCAGCTTGTAGT 58.454 40.909 0.00 0.00 0.00 2.73
7876 8630 3.947834 ACAGTTTCTTGCAGCTTGTAGTT 59.052 39.130 0.00 0.00 0.00 2.24
7877 8631 4.035675 ACAGTTTCTTGCAGCTTGTAGTTC 59.964 41.667 0.00 0.00 0.00 3.01
7878 8632 3.565902 AGTTTCTTGCAGCTTGTAGTTCC 59.434 43.478 0.00 0.00 0.00 3.62
7879 8633 3.492102 TTCTTGCAGCTTGTAGTTCCT 57.508 42.857 0.00 0.00 0.00 3.36
7880 8634 3.492102 TCTTGCAGCTTGTAGTTCCTT 57.508 42.857 0.00 0.00 0.00 3.36
7881 8635 3.403038 TCTTGCAGCTTGTAGTTCCTTC 58.597 45.455 0.00 0.00 0.00 3.46
7931 8687 4.826556 AGACTAAATGCTGAGGTGAAGAC 58.173 43.478 0.00 0.00 0.00 3.01
7986 8742 1.213013 GTGTGATCTCTCGTGCGGT 59.787 57.895 0.00 0.00 0.00 5.68
7998 8754 3.441222 TCTCGTGCGGTTATAAGAGAACA 59.559 43.478 0.00 0.00 32.59 3.18
8002 8758 5.066893 TCGTGCGGTTATAAGAGAACAGTAT 59.933 40.000 0.00 0.00 0.00 2.12
8018 8774 5.483685 ACAGTATGAACAACAGCCTTCTA 57.516 39.130 0.00 0.00 39.69 2.10
8027 8783 3.521126 ACAACAGCCTTCTATCCACTCAT 59.479 43.478 0.00 0.00 0.00 2.90
8050 8810 3.554934 TGACAAAATCTGGCAAGAGTGT 58.445 40.909 0.00 0.52 41.45 3.55
8051 8811 4.713553 TGACAAAATCTGGCAAGAGTGTA 58.286 39.130 0.00 0.00 41.45 2.90
8052 8812 5.316167 TGACAAAATCTGGCAAGAGTGTAT 58.684 37.500 0.00 0.00 41.45 2.29
8053 8813 6.472016 TGACAAAATCTGGCAAGAGTGTATA 58.528 36.000 0.00 0.00 41.45 1.47
8054 8814 6.939730 TGACAAAATCTGGCAAGAGTGTATAA 59.060 34.615 0.00 0.00 41.45 0.98
8055 8815 7.611467 TGACAAAATCTGGCAAGAGTGTATAAT 59.389 33.333 0.00 0.00 41.45 1.28
8056 8816 9.109393 GACAAAATCTGGCAAGAGTGTATAATA 57.891 33.333 0.00 0.00 35.37 0.98
8057 8817 9.461312 ACAAAATCTGGCAAGAGTGTATAATAA 57.539 29.630 0.00 0.00 35.37 1.40
8060 8820 8.854614 AATCTGGCAAGAGTGTATAATAATCC 57.145 34.615 0.00 0.00 35.37 3.01
8061 8821 7.373617 TCTGGCAAGAGTGTATAATAATCCA 57.626 36.000 0.00 0.00 0.00 3.41
8062 8822 7.217200 TCTGGCAAGAGTGTATAATAATCCAC 58.783 38.462 0.00 0.00 0.00 4.02
8063 8823 7.071196 TCTGGCAAGAGTGTATAATAATCCACT 59.929 37.037 0.00 0.00 40.67 4.00
8079 8839 9.865321 AATAATCCACTCATTTGACAAAATCTG 57.135 29.630 4.41 0.00 33.59 2.90
8080 8840 5.710513 TCCACTCATTTGACAAAATCTGG 57.289 39.130 4.41 7.63 33.59 3.86
8081 8841 4.022068 TCCACTCATTTGACAAAATCTGGC 60.022 41.667 4.41 0.00 33.59 4.85
8082 8842 4.262121 CCACTCATTTGACAAAATCTGGCA 60.262 41.667 4.41 0.00 43.31 4.92
8089 8849 3.554934 TGACAAAATCTGGCAAGAGTGT 58.445 40.909 0.00 0.52 41.45 3.55
8090 8850 4.713553 TGACAAAATCTGGCAAGAGTGTA 58.286 39.130 0.00 0.00 41.45 2.90
8091 8851 5.316167 TGACAAAATCTGGCAAGAGTGTAT 58.684 37.500 0.00 0.00 41.45 2.29
8092 8852 6.472016 TGACAAAATCTGGCAAGAGTGTATA 58.528 36.000 0.00 0.00 41.45 1.47
8093 8853 6.939730 TGACAAAATCTGGCAAGAGTGTATAA 59.060 34.615 0.00 0.00 41.45 0.98
8094 8854 7.611467 TGACAAAATCTGGCAAGAGTGTATAAT 59.389 33.333 0.00 0.00 41.45 1.28
8095 8855 9.109393 GACAAAATCTGGCAAGAGTGTATAATA 57.891 33.333 0.00 0.00 35.37 0.98
8096 8856 9.461312 ACAAAATCTGGCAAGAGTGTATAATAA 57.539 29.630 0.00 0.00 35.37 1.40
8099 8859 8.854614 AATCTGGCAAGAGTGTATAATAATCC 57.145 34.615 0.00 0.00 35.37 3.01
8100 8860 7.373617 TCTGGCAAGAGTGTATAATAATCCA 57.626 36.000 0.00 0.00 0.00 3.41
8101 8861 7.217200 TCTGGCAAGAGTGTATAATAATCCAC 58.783 38.462 0.00 0.00 0.00 4.02
8102 8862 7.071196 TCTGGCAAGAGTGTATAATAATCCACT 59.929 37.037 0.00 0.00 40.67 4.00
8118 8878 9.865321 AATAATCCACTCATTTGACAAAATCTG 57.135 29.630 4.41 0.00 33.59 2.90
8119 8879 5.710513 TCCACTCATTTGACAAAATCTGG 57.289 39.130 4.41 7.63 33.59 3.86
8120 8880 4.022068 TCCACTCATTTGACAAAATCTGGC 60.022 41.667 4.41 0.00 33.59 4.85
8121 8881 4.262121 CCACTCATTTGACAAAATCTGGCA 60.262 41.667 4.41 0.00 43.31 4.92
8143 8903 6.998673 GGCAAGAGTGTATAATAGGTCCAATT 59.001 38.462 0.00 0.00 0.00 2.32
8166 8926 3.490348 CTGGGACTTTGTCATCAGGTTT 58.510 45.455 10.31 0.00 34.37 3.27
8186 8946 7.064016 CAGGTTTCTGAGCTCAAGTATCTAAAC 59.936 40.741 18.85 16.42 43.49 2.01
8189 8949 5.641709 TCTGAGCTCAAGTATCTAAACACG 58.358 41.667 18.85 0.52 0.00 4.49
8190 8950 5.414765 TCTGAGCTCAAGTATCTAAACACGA 59.585 40.000 18.85 3.13 0.00 4.35
8193 8953 6.752351 TGAGCTCAAGTATCTAAACACGATTC 59.248 38.462 15.67 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 5.770663 GTGGCATCTATCAAGAGGACTACTA 59.229 44.000 0.00 0.00 42.29 1.82
57 59 4.586841 GTGGCATCTATCAAGAGGACTACT 59.413 45.833 0.00 0.00 42.29 2.57
58 60 4.586841 AGTGGCATCTATCAAGAGGACTAC 59.413 45.833 0.00 0.00 42.29 2.73
68 70 4.962362 TCTACCTGAAAGTGGCATCTATCA 59.038 41.667 0.00 0.00 0.00 2.15
87 89 7.031372 TGTTGGTTGTCTTATACATCGTCTAC 58.969 38.462 0.00 0.00 38.10 2.59
119 121 4.094887 CAGGCACGCTGTTAAATACAATCT 59.905 41.667 0.00 0.00 36.02 2.40
123 125 3.046968 TCAGGCACGCTGTTAAATACA 57.953 42.857 0.00 0.00 34.95 2.29
196 198 1.026182 GCCGTGGCATGATCTTGACA 61.026 55.000 12.94 12.94 41.49 3.58
211 213 0.620556 AAGGAGGATGAACATGCCGT 59.379 50.000 2.88 0.00 0.00 5.68
381 409 0.801574 TCTTAGGGGTAAGGGGGTGT 59.198 55.000 0.00 0.00 0.00 4.16
408 436 0.832135 TAGGGGAAGCCATAGCCTCG 60.832 60.000 0.00 0.00 41.25 4.63
418 476 3.070302 CCACTGTCTATCTTAGGGGAAGC 59.930 52.174 0.00 0.00 37.16 3.86
464 852 0.613292 AGCTCGCTGGAGAAGAAGGA 60.613 55.000 0.00 0.00 43.27 3.36
476 864 0.665835 CTAGTTCATCCGAGCTCGCT 59.334 55.000 30.49 21.54 34.18 4.93
504 898 3.551485 CCGGAATTTTTCATTTCGCCATC 59.449 43.478 0.00 0.00 0.00 3.51
505 899 3.520569 CCGGAATTTTTCATTTCGCCAT 58.479 40.909 0.00 0.00 0.00 4.40
523 917 8.030106 TGCTATTTTTATTTTTCAAGTACCCGG 58.970 33.333 0.00 0.00 0.00 5.73
625 1020 1.337447 CGAGGGGAACTTTTGTCGCTA 60.337 52.381 0.00 0.00 0.00 4.26
658 1053 2.032071 CCTTCCGGCGAGTGGTTT 59.968 61.111 9.30 0.00 0.00 3.27
665 1060 3.605412 TTAGACCCCCTTCCGGCGA 62.605 63.158 9.30 0.00 0.00 5.54
666 1061 3.078836 TTAGACCCCCTTCCGGCG 61.079 66.667 0.00 0.00 0.00 6.46
668 1063 1.905512 CAGTTAGACCCCCTTCCGG 59.094 63.158 0.00 0.00 0.00 5.14
669 1064 1.221021 GCAGTTAGACCCCCTTCCG 59.779 63.158 0.00 0.00 0.00 4.30
670 1065 1.608154 GGCAGTTAGACCCCCTTCC 59.392 63.158 0.00 0.00 0.00 3.46
671 1066 1.221021 CGGCAGTTAGACCCCCTTC 59.779 63.158 0.00 0.00 0.00 3.46
672 1067 1.538135 ACGGCAGTTAGACCCCCTT 60.538 57.895 0.00 0.00 0.00 3.95
673 1068 1.988406 GACGGCAGTTAGACCCCCT 60.988 63.158 0.00 0.00 0.00 4.79
674 1069 2.582978 GACGGCAGTTAGACCCCC 59.417 66.667 0.00 0.00 0.00 5.40
675 1070 2.582978 GGACGGCAGTTAGACCCC 59.417 66.667 0.00 0.00 0.00 4.95
676 1071 2.183555 CGGACGGCAGTTAGACCC 59.816 66.667 0.00 0.00 0.00 4.46
677 1072 2.183555 CCGGACGGCAGTTAGACC 59.816 66.667 0.00 0.00 0.00 3.85
678 1073 1.153881 GACCGGACGGCAGTTAGAC 60.154 63.158 9.46 0.00 39.32 2.59
679 1074 2.693762 CGACCGGACGGCAGTTAGA 61.694 63.158 18.76 0.00 39.32 2.10
680 1075 2.202570 CGACCGGACGGCAGTTAG 60.203 66.667 18.76 0.00 39.32 2.34
681 1076 3.751246 CCGACCGGACGGCAGTTA 61.751 66.667 31.13 0.00 46.20 2.24
736 1131 1.753073 CCCATTTCCATTGTCAGAGGC 59.247 52.381 0.00 0.00 0.00 4.70
879 1277 1.133945 GGAAGGATGGAGAAGAAGGGC 60.134 57.143 0.00 0.00 0.00 5.19
890 1288 1.133668 GGATTGGACTGGGAAGGATGG 60.134 57.143 0.00 0.00 0.00 3.51
892 1290 1.985622 TGGATTGGACTGGGAAGGAT 58.014 50.000 0.00 0.00 0.00 3.24
893 1291 1.753903 TTGGATTGGACTGGGAAGGA 58.246 50.000 0.00 0.00 0.00 3.36
914 1318 1.331756 CGAAGCAAATCCTCCGATTGG 59.668 52.381 0.00 0.00 38.75 3.16
987 1391 2.192175 GCCATCGGAACCGGGAAT 59.808 61.111 6.32 0.00 40.25 3.01
992 1396 4.547367 GAGGGGCCATCGGAACCG 62.547 72.222 4.39 6.94 41.35 4.44
1414 1833 6.212235 TGTTTGCAAGAAATATTTTCGCTCA 58.788 32.000 1.43 4.92 0.00 4.26
1415 1834 6.668325 GCTGTTTGCAAGAAATATTTTCGCTC 60.668 38.462 1.43 0.00 42.31 5.03
1416 1835 5.119125 GCTGTTTGCAAGAAATATTTTCGCT 59.881 36.000 1.43 0.00 42.31 4.93
1456 1917 8.394121 CAGCCAAATCTCAATTCTAAGAGTAAC 58.606 37.037 0.00 0.00 33.63 2.50
1560 2022 6.630413 CGACAATTAATATGGATCGGAGGGAT 60.630 42.308 0.00 0.00 38.35 3.85
1594 2056 2.734175 CGTCGCTGACTTAGTATGGCAA 60.734 50.000 0.00 0.00 0.00 4.52
1596 2058 1.065102 TCGTCGCTGACTTAGTATGGC 59.935 52.381 7.03 0.00 0.00 4.40
1598 2060 5.749620 ACTAATCGTCGCTGACTTAGTATG 58.250 41.667 15.15 0.00 32.41 2.39
1606 2245 3.620929 TCCATACTAATCGTCGCTGAC 57.379 47.619 0.00 0.00 0.00 3.51
1615 2254 7.051000 GCTATTCCCTCCAATCCATACTAATC 58.949 42.308 0.00 0.00 0.00 1.75
1636 2275 6.882610 TCAACAGAGTTGTGAAAATGCTAT 57.117 33.333 9.43 0.00 37.67 2.97
1640 2279 7.173907 AGGTAGATCAACAGAGTTGTGAAAATG 59.826 37.037 9.43 0.00 37.67 2.32
1651 2290 4.701765 CCCATCAAGGTAGATCAACAGAG 58.298 47.826 0.00 0.00 34.66 3.35
1677 2316 0.888736 TCCGGTTGAACTGCCATGTG 60.889 55.000 0.00 0.00 0.00 3.21
1705 2350 2.297698 TTCAGAGTCGGGACTGGTAA 57.702 50.000 5.98 0.00 42.66 2.85
1911 2561 2.738846 CCACTGGTCTCGAATTTGACAG 59.261 50.000 9.28 9.28 35.11 3.51
2132 2802 6.022958 ACAATTATAGAAAAAGTTGCCCCCT 58.977 36.000 0.00 0.00 0.00 4.79
2165 2835 8.306038 TGTGAAAAGCAAGCTATATGAAATTGT 58.694 29.630 0.00 0.00 0.00 2.71
2440 3110 8.125978 TGGCAAGATTCTTTCATTAATTCTGT 57.874 30.769 0.00 0.00 0.00 3.41
2504 3174 6.324254 AGGGTAGTTCATAGCGTCTTAGAAAT 59.676 38.462 0.00 0.00 32.37 2.17
2533 3203 2.413634 CCGCGACACTTATTTTGGAACC 60.414 50.000 8.23 0.00 0.00 3.62
2552 3222 8.528295 CACAACACTTATTTTGAACTAAAACCG 58.472 33.333 0.00 0.00 40.80 4.44
2586 3256 7.194962 GTGTCGTGGTTTTAGGTCAATTTAAA 58.805 34.615 0.00 0.00 0.00 1.52
2596 3266 5.335348 CCAAAATAGGTGTCGTGGTTTTAGG 60.335 44.000 0.00 0.00 0.00 2.69
2748 3418 8.792633 CATTTACTGAAGTTACATGGAAAAGGA 58.207 33.333 0.00 0.00 0.00 3.36
2911 3592 8.883085 GATTTCACAATCCACAAGCTGTTGCT 62.883 42.308 0.00 0.00 41.18 3.91
2913 3594 3.713858 TTCACAATCCACAAGCTGTTG 57.286 42.857 0.00 0.00 39.82 3.33
2946 3627 0.251165 TTTTCCCCCACTGCTAGCAC 60.251 55.000 14.93 0.00 0.00 4.40
2948 3629 0.328258 TCTTTTCCCCCACTGCTAGC 59.672 55.000 8.10 8.10 0.00 3.42
3003 3684 6.672357 GCGGACATATACTTTCAAGTGTCAAC 60.672 42.308 2.26 0.00 40.07 3.18
3005 3686 4.868171 GCGGACATATACTTTCAAGTGTCA 59.132 41.667 2.26 0.00 40.07 3.58
3015 3696 3.584294 ACCCTAAGGCGGACATATACTT 58.416 45.455 0.00 0.00 36.11 2.24
3027 3708 5.710567 ACTTCAAGTAAATGAACCCTAAGGC 59.289 40.000 0.00 0.00 35.55 4.35
3123 3804 0.833409 TCCTGTCAGCAGAAGCCAGA 60.833 55.000 0.00 0.00 45.28 3.86
3133 3814 2.029844 GCCAACGTCTCCTGTCAGC 61.030 63.158 0.00 0.00 0.00 4.26
3143 3824 1.601903 TGTGAGTGAAATGCCAACGTC 59.398 47.619 0.00 0.00 0.00 4.34
3166 3847 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3167 3848 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3168 3849 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3169 3850 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3170 3851 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3171 3852 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3172 3853 9.595823 TGAAAAGACTTATATTTAGGAACGGAG 57.404 33.333 0.00 0.00 0.00 4.63
3173 3854 9.595823 CTGAAAAGACTTATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3174 3855 9.595823 TCTGAAAAGACTTATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3187 3868 9.573166 TCCATTTGAAATCTCTGAAAAGACTTA 57.427 29.630 0.00 0.00 0.00 2.24
3188 3869 8.469309 TCCATTTGAAATCTCTGAAAAGACTT 57.531 30.769 0.00 0.00 0.00 3.01
3189 3870 8.647256 ATCCATTTGAAATCTCTGAAAAGACT 57.353 30.769 0.00 0.00 0.00 3.24
3192 3873 9.578439 GGTAATCCATTTGAAATCTCTGAAAAG 57.422 33.333 0.00 0.00 0.00 2.27
3193 3874 9.087871 TGGTAATCCATTTGAAATCTCTGAAAA 57.912 29.630 0.00 0.00 39.03 2.29
3194 3875 8.522830 GTGGTAATCCATTTGAAATCTCTGAAA 58.477 33.333 0.00 0.00 46.20 2.69
3195 3876 7.669304 TGTGGTAATCCATTTGAAATCTCTGAA 59.331 33.333 0.00 0.00 46.20 3.02
3196 3877 7.174413 TGTGGTAATCCATTTGAAATCTCTGA 58.826 34.615 0.00 0.00 46.20 3.27
3197 3878 7.395190 TGTGGTAATCCATTTGAAATCTCTG 57.605 36.000 0.00 0.00 46.20 3.35
3198 3879 9.125026 GTATGTGGTAATCCATTTGAAATCTCT 57.875 33.333 0.00 0.00 46.20 3.10
3199 3880 8.070171 CGTATGTGGTAATCCATTTGAAATCTC 58.930 37.037 0.00 0.00 46.20 2.75
3200 3881 7.013274 CCGTATGTGGTAATCCATTTGAAATCT 59.987 37.037 0.00 0.00 46.20 2.40
3201 3882 7.012894 TCCGTATGTGGTAATCCATTTGAAATC 59.987 37.037 0.00 0.00 46.20 2.17
3202 3883 6.831353 TCCGTATGTGGTAATCCATTTGAAAT 59.169 34.615 0.00 0.00 46.20 2.17
3203 3884 6.181190 TCCGTATGTGGTAATCCATTTGAAA 58.819 36.000 0.00 0.00 46.20 2.69
3204 3885 5.746284 TCCGTATGTGGTAATCCATTTGAA 58.254 37.500 0.00 0.00 46.20 2.69
3205 3886 5.360649 TCCGTATGTGGTAATCCATTTGA 57.639 39.130 0.00 0.00 46.20 2.69
3206 3887 5.530915 ACATCCGTATGTGGTAATCCATTTG 59.469 40.000 0.00 0.00 44.79 2.32
3207 3888 5.690865 ACATCCGTATGTGGTAATCCATTT 58.309 37.500 0.00 0.00 44.79 2.32
3208 3889 5.304686 ACATCCGTATGTGGTAATCCATT 57.695 39.130 0.00 0.00 44.79 3.16
3209 3890 4.974645 ACATCCGTATGTGGTAATCCAT 57.025 40.909 0.00 0.00 44.79 3.41
3210 3891 7.727578 ATATACATCCGTATGTGGTAATCCA 57.272 36.000 3.56 0.00 45.99 3.41
3211 3892 9.128404 TCTATATACATCCGTATGTGGTAATCC 57.872 37.037 3.56 0.00 45.99 3.01
3212 3893 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
3213 3894 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
3214 3895 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
3216 3897 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3249 3930 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3250 3931 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3251 3932 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3252 3933 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3253 3934 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3254 3935 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3255 3936 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3256 3937 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3257 3938 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3258 3939 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3259 3940 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3260 3941 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3261 3942 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3262 3943 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3263 3944 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3264 3945 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3265 3946 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3266 3947 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3267 3948 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3268 3949 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3269 3950 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3270 3951 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3271 3952 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3272 3953 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3273 3954 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3275 3956 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3276 3957 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3277 3958 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3278 3959 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3279 3960 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3280 3961 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3281 3962 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3282 3963 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3283 3964 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3296 3977 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3297 3978 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3298 3979 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3299 3980 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3300 3981 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3301 3982 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3302 3983 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3303 3984 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3304 3985 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3305 3986 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3306 3987 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3307 3988 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3308 3989 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
3309 3990 8.120538 TCATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
3310 3991 7.472741 TCATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
3311 3992 6.320518 TCATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
3312 3993 5.708544 TCATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
3313 3994 5.329191 TCATATACTCCCTCCGTTCCTAA 57.671 43.478 0.00 0.00 0.00 2.69
3314 3995 5.531753 ATCATATACTCCCTCCGTTCCTA 57.468 43.478 0.00 0.00 0.00 2.94
3315 3996 3.897657 TCATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
3316 3997 4.322801 CCAATCATATACTCCCTCCGTTCC 60.323 50.000 0.00 0.00 0.00 3.62
3317 3998 4.822026 CCAATCATATACTCCCTCCGTTC 58.178 47.826 0.00 0.00 0.00 3.95
3318 3999 3.008049 GCCAATCATATACTCCCTCCGTT 59.992 47.826 0.00 0.00 0.00 4.44
3319 4000 2.567615 GCCAATCATATACTCCCTCCGT 59.432 50.000 0.00 0.00 0.00 4.69
3320 4001 2.567169 TGCCAATCATATACTCCCTCCG 59.433 50.000 0.00 0.00 0.00 4.63
3321 4002 3.840666 TCTGCCAATCATATACTCCCTCC 59.159 47.826 0.00 0.00 0.00 4.30
3322 4003 5.426504 CATCTGCCAATCATATACTCCCTC 58.573 45.833 0.00 0.00 0.00 4.30
3323 4004 4.324099 GCATCTGCCAATCATATACTCCCT 60.324 45.833 0.00 0.00 34.31 4.20
3324 4005 3.944015 GCATCTGCCAATCATATACTCCC 59.056 47.826 0.00 0.00 34.31 4.30
3344 4025 4.149598 GTTTTTAGAGGAAAAGGGAGGCA 58.850 43.478 0.00 0.00 38.27 4.75
3349 4030 8.856103 TCTTGTATTGTTTTTAGAGGAAAAGGG 58.144 33.333 0.00 0.00 38.27 3.95
3361 4042 9.620660 GGTTCACGATATTCTTGTATTGTTTTT 57.379 29.630 0.00 0.00 0.00 1.94
3430 4111 9.917887 ATCTGTGAAATAGAAAGGAATGAGATT 57.082 29.630 0.00 0.00 37.71 2.40
3506 4187 0.467844 AAGGGCTGTTGTGATGTGCA 60.468 50.000 0.00 0.00 0.00 4.57
3566 4247 1.398390 CAGTAATGGTCGCAGAAAGCC 59.602 52.381 0.00 0.00 39.69 4.35
3783 4481 5.235850 TCCAAAGTAATGTCCAGCAACTA 57.764 39.130 0.00 0.00 0.00 2.24
4017 4716 3.784701 TTTGTGCGGCTTAAAAACTCA 57.215 38.095 0.00 0.00 0.00 3.41
4123 4822 3.935203 GAGCAATAGCAAGTTGTGAGCTA 59.065 43.478 4.48 0.00 45.49 3.32
4124 4823 2.746362 GAGCAATAGCAAGTTGTGAGCT 59.254 45.455 4.48 7.34 45.49 4.09
4125 4824 2.159462 GGAGCAATAGCAAGTTGTGAGC 60.159 50.000 4.48 2.68 45.49 4.26
4126 4825 3.126514 CAGGAGCAATAGCAAGTTGTGAG 59.873 47.826 4.48 0.00 45.49 3.51
4127 4826 3.076621 CAGGAGCAATAGCAAGTTGTGA 58.923 45.455 4.48 0.00 45.49 3.58
4128 4827 2.816087 ACAGGAGCAATAGCAAGTTGTG 59.184 45.455 4.48 0.00 45.49 3.33
4129 4828 3.146104 ACAGGAGCAATAGCAAGTTGT 57.854 42.857 4.48 0.00 45.49 3.32
4130 4829 5.182001 ACTTAACAGGAGCAATAGCAAGTTG 59.818 40.000 0.00 0.00 45.49 3.16
4131 4830 5.316987 ACTTAACAGGAGCAATAGCAAGTT 58.683 37.500 0.00 0.00 45.49 2.66
4132 4831 4.911390 ACTTAACAGGAGCAATAGCAAGT 58.089 39.130 0.00 0.00 45.49 3.16
4133 4832 5.064452 CAGACTTAACAGGAGCAATAGCAAG 59.936 44.000 0.00 0.00 45.49 4.01
4134 4833 4.937620 CAGACTTAACAGGAGCAATAGCAA 59.062 41.667 0.00 0.00 45.49 3.91
4135 4834 4.507710 CAGACTTAACAGGAGCAATAGCA 58.492 43.478 0.00 0.00 45.49 3.49
4136 4835 3.311048 GCAGACTTAACAGGAGCAATAGC 59.689 47.826 0.00 0.00 42.56 2.97
4137 4836 4.764172 AGCAGACTTAACAGGAGCAATAG 58.236 43.478 0.00 0.00 0.00 1.73
4138 4837 4.222810 TGAGCAGACTTAACAGGAGCAATA 59.777 41.667 0.00 0.00 0.00 1.90
4139 4838 3.008375 TGAGCAGACTTAACAGGAGCAAT 59.992 43.478 0.00 0.00 0.00 3.56
4140 4839 2.368548 TGAGCAGACTTAACAGGAGCAA 59.631 45.455 0.00 0.00 0.00 3.91
4141 4840 1.970640 TGAGCAGACTTAACAGGAGCA 59.029 47.619 0.00 0.00 0.00 4.26
4142 4841 2.751166 TGAGCAGACTTAACAGGAGC 57.249 50.000 0.00 0.00 0.00 4.70
4143 4842 4.099266 AGCTATGAGCAGACTTAACAGGAG 59.901 45.833 0.64 0.00 45.56 3.69
4144 4843 4.026744 AGCTATGAGCAGACTTAACAGGA 58.973 43.478 0.64 0.00 45.56 3.86
4145 4844 4.142071 TGAGCTATGAGCAGACTTAACAGG 60.142 45.833 0.64 0.00 45.56 4.00
4146 4845 4.803088 GTGAGCTATGAGCAGACTTAACAG 59.197 45.833 0.64 0.00 45.56 3.16
4147 4846 4.220602 TGTGAGCTATGAGCAGACTTAACA 59.779 41.667 0.64 0.00 45.56 2.41
4148 4847 4.748892 TGTGAGCTATGAGCAGACTTAAC 58.251 43.478 0.64 0.00 45.56 2.01
4149 4848 5.047021 AGTTGTGAGCTATGAGCAGACTTAA 60.047 40.000 0.64 0.00 45.56 1.85
4150 4849 4.464244 AGTTGTGAGCTATGAGCAGACTTA 59.536 41.667 0.64 0.00 45.56 2.24
4151 4850 3.260380 AGTTGTGAGCTATGAGCAGACTT 59.740 43.478 0.64 0.00 45.56 3.01
4152 4851 2.830923 AGTTGTGAGCTATGAGCAGACT 59.169 45.455 0.64 0.00 45.56 3.24
4153 4852 3.244033 AGTTGTGAGCTATGAGCAGAC 57.756 47.619 0.64 0.00 45.56 3.51
4154 4853 3.593096 CAAGTTGTGAGCTATGAGCAGA 58.407 45.455 0.64 0.00 45.56 4.26
4155 4854 2.095532 GCAAGTTGTGAGCTATGAGCAG 59.904 50.000 4.48 0.00 45.56 4.24
4156 4855 2.079158 GCAAGTTGTGAGCTATGAGCA 58.921 47.619 4.48 0.00 45.56 4.26
4157 4856 2.354259 AGCAAGTTGTGAGCTATGAGC 58.646 47.619 4.48 0.00 42.84 4.26
4201 4900 4.913924 CAGTCAAACACAATAGCAAAGAGC 59.086 41.667 0.00 0.00 46.19 4.09
4203 4902 5.356751 ACACAGTCAAACACAATAGCAAAGA 59.643 36.000 0.00 0.00 0.00 2.52
4233 4932 4.221703 AGAAATGGACTCGAGAGACACATT 59.778 41.667 21.68 16.78 34.15 2.71
4247 4946 6.760770 CAGGAGAGAAACTATCAGAAATGGAC 59.239 42.308 0.00 0.00 0.00 4.02
4525 5227 6.373186 AGAGTTGTTTAAGTTAACCACTGC 57.627 37.500 0.88 0.00 35.04 4.40
4528 5230 8.095937 AGCATAGAGTTGTTTAAGTTAACCAC 57.904 34.615 0.88 0.00 0.00 4.16
4717 5420 7.457024 AGTATAACGGCACCAAAAAGTTTAT 57.543 32.000 0.00 0.00 0.00 1.40
4803 5513 6.721426 CGCAAATTTCACGAAATTAACGAAAG 59.279 34.615 22.53 9.64 46.76 2.62
4880 5590 1.693627 GAGCCTAGCTAGGTAGTGCA 58.306 55.000 34.85 3.84 45.42 4.57
4881 5591 0.963225 GGAGCCTAGCTAGGTAGTGC 59.037 60.000 34.85 22.97 45.42 4.40
4899 5609 0.988145 TCTGTTAGGCAGGATGGGGG 60.988 60.000 0.00 0.00 45.08 5.40
4900 5610 0.181350 GTCTGTTAGGCAGGATGGGG 59.819 60.000 0.00 0.00 45.08 4.96
4944 5654 1.153349 GGGACTGCTTAGGCTTCCG 60.153 63.158 10.57 0.00 40.16 4.30
5041 5752 5.065988 AGTGGGCTATGTTAAAATTACGCAG 59.934 40.000 0.00 0.00 0.00 5.18
5367 6107 1.757118 TCTCAGGACCAATAGCTTCGG 59.243 52.381 0.00 0.00 0.00 4.30
5443 6183 7.894376 AATCAACCACTTCAATGCTTTTATG 57.106 32.000 0.00 0.00 0.00 1.90
5552 6292 5.545658 TGAGCTTTAAAACCTTATCTGCG 57.454 39.130 0.00 0.00 0.00 5.18
5771 6515 5.355350 CACCATTTTCCAGAAGTAGATCCAC 59.645 44.000 0.00 0.00 0.00 4.02
5840 6584 8.483758 CCACAACTTAATAGGTAATGACTAGGT 58.516 37.037 0.00 0.00 0.00 3.08
5853 6597 8.696374 TCCAGAAGTAGATCCACAACTTAATAG 58.304 37.037 0.00 0.00 33.72 1.73
5860 6604 6.763610 CCTATTTCCAGAAGTAGATCCACAAC 59.236 42.308 10.54 0.00 33.91 3.32
5998 6742 6.827586 AAACACTTTCAAACAGTAACAGGA 57.172 33.333 0.00 0.00 0.00 3.86
6045 6789 7.283807 AGGTAGACCGAACAAAACTAAACATTT 59.716 33.333 0.00 0.00 42.08 2.32
6079 6827 7.711339 GGAGTATTGGTACAGAAGATAACAAGG 59.289 40.741 0.00 0.00 42.39 3.61
6080 6828 7.711339 GGGAGTATTGGTACAGAAGATAACAAG 59.289 40.741 0.00 0.00 42.39 3.16
6081 6829 7.181305 TGGGAGTATTGGTACAGAAGATAACAA 59.819 37.037 0.00 0.00 42.39 2.83
6082 6830 6.670464 TGGGAGTATTGGTACAGAAGATAACA 59.330 38.462 0.00 0.00 42.39 2.41
6100 6848 4.112634 AGCAAAAGATTGGTTGGGAGTA 57.887 40.909 0.00 0.00 44.52 2.59
6298 7046 1.122632 TTCCCCAGCACTGAACCGTA 61.123 55.000 0.00 0.00 0.00 4.02
6335 7083 2.741145 TGTAACCCACCCATATTTGCC 58.259 47.619 0.00 0.00 0.00 4.52
6367 7115 3.929610 GACAAGTCGCAGAAGAAATAGCT 59.070 43.478 0.00 0.00 39.69 3.32
6369 7117 4.245660 TGGACAAGTCGCAGAAGAAATAG 58.754 43.478 0.00 0.00 39.69 1.73
6382 7130 5.674525 TCATCACTCCATTATGGACAAGTC 58.325 41.667 10.29 0.00 42.67 3.01
6395 7143 0.107703 GTGGCCGATTCATCACTCCA 60.108 55.000 0.00 0.00 0.00 3.86
6496 7244 1.072965 CAAAGCCTCTCAAGGTGGTCT 59.927 52.381 0.00 0.00 45.34 3.85
6710 7458 8.854614 AGATAAACAACACTTATGAGCTTCTT 57.145 30.769 0.00 0.00 0.00 2.52
6828 7576 4.650734 TCAAGATGTATTTGACACCAGCA 58.349 39.130 0.00 0.00 42.17 4.41
6906 7654 4.101741 GGGACCTACAGCATGATTAAGAGT 59.898 45.833 0.00 0.00 39.69 3.24
7002 7750 8.723942 AACTAATATGAGTGTTGAGTTCATCC 57.276 34.615 0.00 0.00 33.81 3.51
7006 7754 8.988064 TCTGAACTAATATGAGTGTTGAGTTC 57.012 34.615 0.00 0.00 40.96 3.01
7014 7762 7.674120 TGATGGGATCTGAACTAATATGAGTG 58.326 38.462 0.00 0.00 0.00 3.51
7015 7763 7.862274 TGATGGGATCTGAACTAATATGAGT 57.138 36.000 0.00 0.00 0.00 3.41
7021 7769 8.153550 GTCTGTAATGATGGGATCTGAACTAAT 58.846 37.037 0.00 0.00 0.00 1.73
7038 7786 8.918961 AGAAGAAACGATAAGAGTCTGTAATG 57.081 34.615 0.00 0.00 0.00 1.90
7113 7861 1.378514 GACAATCCCGGGTGCACAT 60.379 57.895 22.86 2.34 0.00 3.21
7167 7915 4.933400 TCTCCGCAAAAACAGGTCTTATAC 59.067 41.667 0.00 0.00 0.00 1.47
7363 8111 9.665264 TTTCTTTTCTTTTCTTTCTTCTATCGC 57.335 29.630 0.00 0.00 0.00 4.58
7394 8142 6.451064 ACATCGGTTTTTCTGTTCTTTCTT 57.549 33.333 0.00 0.00 0.00 2.52
7400 8148 5.041951 TGCATACATCGGTTTTTCTGTTC 57.958 39.130 0.00 0.00 0.00 3.18
7402 8150 5.235305 GATGCATACATCGGTTTTTCTGT 57.765 39.130 0.00 0.00 43.15 3.41
7445 8193 4.503714 TTTTCTGAAGAGGTGGTTGACT 57.496 40.909 0.00 0.00 0.00 3.41
7487 8235 2.737252 GACGCTCCTTGAGTCGATTTTT 59.263 45.455 12.47 0.00 35.89 1.94
7490 8238 3.723554 GACGCTCCTTGAGTCGATT 57.276 52.632 12.47 0.00 35.89 3.34
7506 8258 3.840763 CAGCAATTTAAACTCGAAGCGAC 59.159 43.478 0.00 0.00 0.00 5.19
7512 8264 7.421599 TCACATTTTCAGCAATTTAAACTCGA 58.578 30.769 0.00 0.00 0.00 4.04
7516 8268 9.584839 GTTCATCACATTTTCAGCAATTTAAAC 57.415 29.630 0.00 0.00 0.00 2.01
7539 8291 1.112315 TGGCATGGTTGTGGGTGTTC 61.112 55.000 0.00 0.00 0.00 3.18
7563 8316 1.340697 GCCGTAAAGGGGAGGTGAAAT 60.341 52.381 0.00 0.00 41.48 2.17
7639 8392 3.817647 GCAGGTTATCAGCAGGGATTTAG 59.182 47.826 0.00 0.00 0.00 1.85
7664 8417 0.328258 TCTTAAGGGCCTGCTTGGTC 59.672 55.000 6.92 0.00 40.45 4.02
7680 8433 2.893489 GGTGCAAGGATGAAAACCTCTT 59.107 45.455 0.00 0.00 38.69 2.85
7689 8442 0.180171 CCGGTATGGTGCAAGGATGA 59.820 55.000 0.00 0.00 0.00 2.92
7740 8493 0.321671 GGGAGACTGCACAAGCTACA 59.678 55.000 0.00 0.00 42.74 2.74
7795 8548 5.565834 CGAGAGGGCATTCTAAACCTATCTC 60.566 48.000 0.00 0.00 38.77 2.75
7796 8549 4.282195 CGAGAGGGCATTCTAAACCTATCT 59.718 45.833 0.00 0.00 38.77 1.98
7803 8556 4.223032 AGAGAAACGAGAGGGCATTCTAAA 59.777 41.667 0.00 0.00 30.89 1.85
7812 8565 4.627467 CACATACAAAGAGAAACGAGAGGG 59.373 45.833 0.00 0.00 0.00 4.30
7837 8591 2.542595 ACTGTTACAAACGCTGCTACAC 59.457 45.455 0.00 0.00 0.00 2.90
7870 8624 7.287061 TCTTCAAATGGAAAGAAGGAACTACA 58.713 34.615 0.00 0.00 39.30 2.74
7871 8625 7.661847 TCTCTTCAAATGGAAAGAAGGAACTAC 59.338 37.037 0.00 0.00 39.30 2.73
7873 8627 6.605119 TCTCTTCAAATGGAAAGAAGGAACT 58.395 36.000 0.00 0.00 39.30 3.01
7874 8628 6.884280 TCTCTTCAAATGGAAAGAAGGAAC 57.116 37.500 0.00 0.00 39.30 3.62
7875 8629 7.006509 ACATCTCTTCAAATGGAAAGAAGGAA 58.993 34.615 0.00 0.00 39.30 3.36
7876 8630 6.546484 ACATCTCTTCAAATGGAAAGAAGGA 58.454 36.000 0.00 0.00 39.30 3.36
7877 8631 6.830873 ACATCTCTTCAAATGGAAAGAAGG 57.169 37.500 0.00 0.00 39.30 3.46
7986 8742 9.151471 GCTGTTGTTCATACTGTTCTCTTATAA 57.849 33.333 0.00 0.00 0.00 0.98
7998 8754 5.189736 TGGATAGAAGGCTGTTGTTCATACT 59.810 40.000 0.00 0.00 0.00 2.12
8002 8758 3.327757 AGTGGATAGAAGGCTGTTGTTCA 59.672 43.478 0.00 0.00 0.00 3.18
8018 8774 5.337009 GCCAGATTTTGTCAAATGAGTGGAT 60.337 40.000 15.56 0.12 32.35 3.41
8027 8783 4.402155 ACACTCTTGCCAGATTTTGTCAAA 59.598 37.500 0.00 0.00 0.00 2.69
8053 8813 9.865321 CAGATTTTGTCAAATGAGTGGATTATT 57.135 29.630 0.00 0.00 32.35 1.40
8054 8814 8.472413 CCAGATTTTGTCAAATGAGTGGATTAT 58.528 33.333 0.00 0.00 32.35 1.28
8055 8815 7.577426 GCCAGATTTTGTCAAATGAGTGGATTA 60.577 37.037 15.56 0.00 32.35 1.75
8056 8816 6.694447 CCAGATTTTGTCAAATGAGTGGATT 58.306 36.000 0.00 0.00 32.35 3.01
8057 8817 5.337009 GCCAGATTTTGTCAAATGAGTGGAT 60.337 40.000 15.56 0.12 32.35 3.41
8058 8818 4.022068 GCCAGATTTTGTCAAATGAGTGGA 60.022 41.667 15.56 0.00 32.35 4.02
8059 8819 4.240096 GCCAGATTTTGTCAAATGAGTGG 58.760 43.478 0.00 5.66 32.35 4.00
8060 8820 4.873817 TGCCAGATTTTGTCAAATGAGTG 58.126 39.130 0.00 0.00 32.35 3.51
8061 8821 5.302568 TCTTGCCAGATTTTGTCAAATGAGT 59.697 36.000 0.00 0.00 32.35 3.41
8062 8822 5.775686 TCTTGCCAGATTTTGTCAAATGAG 58.224 37.500 0.00 0.00 32.35 2.90
8063 8823 5.302568 ACTCTTGCCAGATTTTGTCAAATGA 59.697 36.000 0.00 0.00 32.35 2.57
8064 8824 5.404366 CACTCTTGCCAGATTTTGTCAAATG 59.596 40.000 0.00 0.00 32.35 2.32
8065 8825 5.069516 ACACTCTTGCCAGATTTTGTCAAAT 59.930 36.000 0.00 0.00 35.12 2.32
8066 8826 4.402155 ACACTCTTGCCAGATTTTGTCAAA 59.598 37.500 0.00 0.00 0.00 2.69
8067 8827 3.953612 ACACTCTTGCCAGATTTTGTCAA 59.046 39.130 0.00 0.00 0.00 3.18
8068 8828 3.554934 ACACTCTTGCCAGATTTTGTCA 58.445 40.909 0.00 0.00 0.00 3.58
8069 8829 5.886960 ATACACTCTTGCCAGATTTTGTC 57.113 39.130 1.48 0.00 0.00 3.18
8070 8830 7.944729 ATTATACACTCTTGCCAGATTTTGT 57.055 32.000 0.00 0.00 0.00 2.83
8073 8833 9.289782 GGATTATTATACACTCTTGCCAGATTT 57.710 33.333 0.00 0.00 0.00 2.17
8074 8834 8.439971 TGGATTATTATACACTCTTGCCAGATT 58.560 33.333 0.00 0.00 0.00 2.40
8075 8835 7.880195 GTGGATTATTATACACTCTTGCCAGAT 59.120 37.037 0.00 0.00 41.60 2.90
8076 8836 7.217200 GTGGATTATTATACACTCTTGCCAGA 58.783 38.462 0.00 0.00 41.60 3.86
8077 8837 7.426929 GTGGATTATTATACACTCTTGCCAG 57.573 40.000 0.00 0.00 41.60 4.85
8092 8852 9.865321 CAGATTTTGTCAAATGAGTGGATTATT 57.135 29.630 0.00 0.00 32.35 1.40
8093 8853 8.472413 CCAGATTTTGTCAAATGAGTGGATTAT 58.528 33.333 0.00 0.00 32.35 1.28
8094 8854 7.577426 GCCAGATTTTGTCAAATGAGTGGATTA 60.577 37.037 15.56 0.00 32.35 1.75
8095 8855 6.694447 CCAGATTTTGTCAAATGAGTGGATT 58.306 36.000 0.00 0.00 32.35 3.01
8096 8856 5.337009 GCCAGATTTTGTCAAATGAGTGGAT 60.337 40.000 15.56 0.12 32.35 3.41
8097 8857 4.022068 GCCAGATTTTGTCAAATGAGTGGA 60.022 41.667 15.56 0.00 32.35 4.02
8098 8858 4.240096 GCCAGATTTTGTCAAATGAGTGG 58.760 43.478 0.00 5.66 32.35 4.00
8099 8859 4.873817 TGCCAGATTTTGTCAAATGAGTG 58.126 39.130 0.00 0.00 32.35 3.51
8100 8860 5.302568 TCTTGCCAGATTTTGTCAAATGAGT 59.697 36.000 0.00 0.00 32.35 3.41
8101 8861 5.775686 TCTTGCCAGATTTTGTCAAATGAG 58.224 37.500 0.00 0.00 32.35 2.90
8102 8862 5.302568 ACTCTTGCCAGATTTTGTCAAATGA 59.697 36.000 0.00 0.00 32.35 2.57
8103 8863 5.404366 CACTCTTGCCAGATTTTGTCAAATG 59.596 40.000 0.00 0.00 32.35 2.32
8104 8864 5.069516 ACACTCTTGCCAGATTTTGTCAAAT 59.930 36.000 0.00 0.00 35.12 2.32
8105 8865 4.402155 ACACTCTTGCCAGATTTTGTCAAA 59.598 37.500 0.00 0.00 0.00 2.69
8106 8866 3.953612 ACACTCTTGCCAGATTTTGTCAA 59.046 39.130 0.00 0.00 0.00 3.18
8107 8867 3.554934 ACACTCTTGCCAGATTTTGTCA 58.445 40.909 0.00 0.00 0.00 3.58
8108 8868 5.886960 ATACACTCTTGCCAGATTTTGTC 57.113 39.130 1.48 0.00 0.00 3.18
8109 8869 7.944729 ATTATACACTCTTGCCAGATTTTGT 57.055 32.000 0.00 0.00 0.00 2.83
8110 8870 8.562892 CCTATTATACACTCTTGCCAGATTTTG 58.437 37.037 0.00 0.00 0.00 2.44
8111 8871 8.275040 ACCTATTATACACTCTTGCCAGATTTT 58.725 33.333 0.00 0.00 0.00 1.82
8112 8872 7.806180 ACCTATTATACACTCTTGCCAGATTT 58.194 34.615 0.00 0.00 0.00 2.17
8113 8873 7.380423 ACCTATTATACACTCTTGCCAGATT 57.620 36.000 0.00 0.00 0.00 2.40
8114 8874 6.014156 GGACCTATTATACACTCTTGCCAGAT 60.014 42.308 0.00 0.00 0.00 2.90
8115 8875 5.304614 GGACCTATTATACACTCTTGCCAGA 59.695 44.000 0.00 0.00 0.00 3.86
8116 8876 5.070446 TGGACCTATTATACACTCTTGCCAG 59.930 44.000 0.00 0.00 0.00 4.85
8117 8877 4.966168 TGGACCTATTATACACTCTTGCCA 59.034 41.667 0.00 0.00 0.00 4.92
8118 8878 5.546621 TGGACCTATTATACACTCTTGCC 57.453 43.478 0.00 0.00 0.00 4.52
8119 8879 7.520614 GCAATTGGACCTATTATACACTCTTGC 60.521 40.741 7.72 0.00 0.00 4.01
8120 8880 7.716998 AGCAATTGGACCTATTATACACTCTTG 59.283 37.037 7.72 0.00 0.00 3.02
8121 8881 7.716998 CAGCAATTGGACCTATTATACACTCTT 59.283 37.037 7.72 0.00 0.00 2.85
8122 8882 7.220030 CAGCAATTGGACCTATTATACACTCT 58.780 38.462 7.72 0.00 0.00 3.24
8123 8883 7.426929 CAGCAATTGGACCTATTATACACTC 57.573 40.000 7.72 0.00 0.00 3.51
8143 8903 1.271543 CCTGATGACAAAGTCCCAGCA 60.272 52.381 9.63 0.00 33.84 4.41
8166 8926 5.414765 TCGTGTTTAGATACTTGAGCTCAGA 59.585 40.000 17.43 7.01 0.00 3.27
8186 8946 7.755582 TGTGATATTTCTACACAGAATCGTG 57.244 36.000 0.00 4.26 40.47 4.35
8189 8949 7.517417 CGGCTTGTGATATTTCTACACAGAATC 60.517 40.741 0.00 0.00 43.62 2.52
8190 8950 6.258727 CGGCTTGTGATATTTCTACACAGAAT 59.741 38.462 0.00 0.00 43.62 2.40
8193 8953 5.005779 GTCGGCTTGTGATATTTCTACACAG 59.994 44.000 0.00 0.00 43.62 3.66
8198 8958 5.353394 AAGGTCGGCTTGTGATATTTCTA 57.647 39.130 0.00 0.00 0.00 2.10
8206 8966 0.246635 GAGCTAAGGTCGGCTTGTGA 59.753 55.000 0.00 0.00 39.05 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.