Multiple sequence alignment - TraesCS7B01G227100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G227100 chr7B 100.000 3824 0 0 1 3824 427372464 427376287 0.000000e+00 7062.0
1 TraesCS7B01G227100 chr7B 98.471 327 5 0 3 329 524910989 524910663 9.210000e-161 577.0
2 TraesCS7B01G227100 chr7B 95.758 330 13 1 3 332 506029923 506030251 7.270000e-147 531.0
3 TraesCS7B01G227100 chr7D 92.835 3503 184 27 334 3824 413100223 413103670 0.000000e+00 5016.0
4 TraesCS7B01G227100 chr7A 94.110 1613 90 2 1001 2612 474518625 474520233 0.000000e+00 2447.0
5 TraesCS7B01G227100 chr7A 89.344 732 69 7 2596 3324 474520391 474521116 0.000000e+00 911.0
6 TraesCS7B01G227100 chr7A 94.106 509 25 3 3318 3824 474522661 474523166 0.000000e+00 769.0
7 TraesCS7B01G227100 chr7A 89.920 377 31 3 334 704 474514901 474515276 2.670000e-131 479.0
8 TraesCS7B01G227100 chr5B 98.480 329 5 0 3 331 446565790 446566118 7.120000e-162 580.0
9 TraesCS7B01G227100 chr5B 96.096 333 13 0 3 335 153494825 153494493 9.340000e-151 544.0
10 TraesCS7B01G227100 chr6A 97.568 329 8 0 3 331 182498431 182498103 7.170000e-157 564.0
11 TraesCS7B01G227100 chr6A 87.013 308 32 6 2720 3026 585497824 585497524 1.320000e-89 340.0
12 TraesCS7B01G227100 chr6A 90.099 101 7 1 1373 1473 585510900 585510803 1.120000e-25 128.0
13 TraesCS7B01G227100 chr6A 95.652 69 3 0 2359 2427 585500414 585500346 1.120000e-20 111.0
14 TraesCS7B01G227100 chr6A 87.912 91 11 0 2633 2723 585498255 585498165 1.450000e-19 108.0
15 TraesCS7B01G227100 chr6A 98.305 59 1 0 1720 1778 585509935 585509877 1.880000e-18 104.0
16 TraesCS7B01G227100 chr6A 98.246 57 1 0 1988 2044 585506028 585505972 2.430000e-17 100.0
17 TraesCS7B01G227100 chr6A 87.838 74 8 1 1912 1984 585507729 585507656 6.810000e-13 86.1
18 TraesCS7B01G227100 chr4B 96.960 329 10 0 3 331 327537628 327537956 1.550000e-153 553.0
19 TraesCS7B01G227100 chr4B 95.441 329 15 0 3 331 88910609 88910281 3.380000e-145 525.0
20 TraesCS7B01G227100 chr4B 93.056 72 5 0 2356 2427 623661877 623661948 5.220000e-19 106.0
21 TraesCS7B01G227100 chr3B 96.049 329 13 0 3 331 359214608 359214280 1.560000e-148 536.0
22 TraesCS7B01G227100 chr3B 95.441 329 15 0 3 331 630902432 630902104 3.380000e-145 525.0
23 TraesCS7B01G227100 chr6D 86.817 311 30 9 2720 3026 437325073 437324770 1.700000e-88 337.0
24 TraesCS7B01G227100 chr6D 91.089 101 6 1 1373 1473 437337960 437337863 2.400000e-27 134.0
25 TraesCS7B01G227100 chr6D 95.652 69 3 0 2359 2427 437327685 437327617 1.120000e-20 111.0
26 TraesCS7B01G227100 chr6D 87.912 91 11 0 2633 2723 437325525 437325435 1.450000e-19 108.0
27 TraesCS7B01G227100 chr6D 98.305 59 1 0 1720 1778 437336991 437336933 1.880000e-18 104.0
28 TraesCS7B01G227100 chr6D 98.246 57 1 0 1988 2044 437333030 437332974 2.430000e-17 100.0
29 TraesCS7B01G227100 chr6D 87.838 74 8 1 1912 1984 437334794 437334721 6.810000e-13 86.1
30 TraesCS7B01G227100 chr2A 86.731 309 29 8 2720 3025 31985233 31985532 2.200000e-87 333.0
31 TraesCS7B01G227100 chr2A 85.714 91 13 0 2633 2723 31984808 31984898 3.140000e-16 97.1
32 TraesCS7B01G227100 chr6B 85.761 309 35 7 2720 3026 662091368 662091067 6.160000e-83 318.0
33 TraesCS7B01G227100 chr6B 91.089 101 6 1 1373 1473 662104123 662104026 2.400000e-27 134.0
34 TraesCS7B01G227100 chr6B 87.912 91 11 0 2633 2723 662091799 662091709 1.450000e-19 108.0
35 TraesCS7B01G227100 chr6B 94.203 69 4 0 2359 2427 662093955 662093887 5.220000e-19 106.0
36 TraesCS7B01G227100 chr6B 98.305 59 1 0 1720 1778 662103154 662103096 1.880000e-18 104.0
37 TraesCS7B01G227100 chr6B 96.667 60 2 0 1985 2044 662099183 662099124 2.430000e-17 100.0
38 TraesCS7B01G227100 chr2B 91.971 137 11 0 2723 2859 49305659 49305523 3.900000e-45 193.0
39 TraesCS7B01G227100 chr2B 91.089 101 6 1 1373 1473 48046733 48046830 2.400000e-27 134.0
40 TraesCS7B01G227100 chr2B 79.375 160 26 5 2856 3015 49305401 49305249 5.220000e-19 106.0
41 TraesCS7B01G227100 chr2B 94.203 69 4 0 2359 2427 49316806 49316738 5.220000e-19 106.0
42 TraesCS7B01G227100 chr2B 93.056 72 5 0 2356 2427 116164164 116164235 5.220000e-19 106.0
43 TraesCS7B01G227100 chr2B 94.203 69 4 0 2359 2427 484450067 484449999 5.220000e-19 106.0
44 TraesCS7B01G227100 chr2B 96.610 59 2 0 1720 1778 48047699 48047757 8.740000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G227100 chr7B 427372464 427376287 3823 False 7062.00 7062 100.0000 1 3824 1 chr7B.!!$F1 3823
1 TraesCS7B01G227100 chr7D 413100223 413103670 3447 False 5016.00 5016 92.8350 334 3824 1 chr7D.!!$F1 3490
2 TraesCS7B01G227100 chr7A 474514901 474523166 8265 False 1151.50 2447 91.8700 334 3824 4 chr7A.!!$F1 3490
3 TraesCS7B01G227100 chr2A 31984808 31985532 724 False 215.05 333 86.2225 2633 3025 2 chr2A.!!$F1 392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.035439 TTCTGAATCCCCCAAGACGC 60.035 55.0 0.00 0.0 0.00 5.19 F
241 242 0.037697 AGTGTTGTAATGCCGCGAGA 60.038 50.0 8.23 0.0 0.00 4.04 F
1247 4372 0.181587 CCCAAGGTGGTGTGTGTACA 59.818 55.0 0.00 0.0 35.17 2.90 F
2140 5266 0.378610 GCAGAAAATACTGGAGGCGC 59.621 55.0 0.00 0.0 38.22 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 5157 0.033642 GCCTGGTTATCTCCGGTAGC 59.966 60.000 0.00 0.00 32.33 3.58 R
2202 5328 0.037605 CCAGAAGGCGAAGTACGGTT 60.038 55.000 0.00 0.00 42.83 4.44 R
2205 5331 0.038526 ACACCAGAAGGCGAAGTACG 60.039 55.000 0.00 0.00 45.66 3.67 R
2993 6634 1.062587 GAGATATTGGTGTGCACGTGC 59.937 52.381 33.11 33.11 42.50 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.680352 GAGGAGCTCGGTGTGGGA 60.680 66.667 7.83 0.00 0.00 4.37
26 27 2.203788 AGGAGCTCGGTGTGGGAA 60.204 61.111 7.83 0.00 0.00 3.97
27 28 1.613630 AGGAGCTCGGTGTGGGAAT 60.614 57.895 7.83 0.00 0.00 3.01
28 29 1.450312 GGAGCTCGGTGTGGGAATG 60.450 63.158 7.83 0.00 0.00 2.67
29 30 1.450312 GAGCTCGGTGTGGGAATGG 60.450 63.158 0.00 0.00 0.00 3.16
30 31 2.185310 GAGCTCGGTGTGGGAATGGT 62.185 60.000 0.00 0.00 0.00 3.55
31 32 2.040544 GCTCGGTGTGGGAATGGTG 61.041 63.158 0.00 0.00 0.00 4.17
32 33 1.377202 CTCGGTGTGGGAATGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
33 34 1.836999 CTCGGTGTGGGAATGGTGGA 61.837 60.000 0.00 0.00 0.00 4.02
34 35 1.074072 CGGTGTGGGAATGGTGGAA 59.926 57.895 0.00 0.00 0.00 3.53
35 36 0.323360 CGGTGTGGGAATGGTGGAAT 60.323 55.000 0.00 0.00 0.00 3.01
36 37 1.185315 GGTGTGGGAATGGTGGAATG 58.815 55.000 0.00 0.00 0.00 2.67
37 38 1.185315 GTGTGGGAATGGTGGAATGG 58.815 55.000 0.00 0.00 0.00 3.16
38 39 1.079796 TGTGGGAATGGTGGAATGGA 58.920 50.000 0.00 0.00 0.00 3.41
39 40 1.430853 TGTGGGAATGGTGGAATGGAA 59.569 47.619 0.00 0.00 0.00 3.53
40 41 2.158249 TGTGGGAATGGTGGAATGGAAA 60.158 45.455 0.00 0.00 0.00 3.13
41 42 2.233676 GTGGGAATGGTGGAATGGAAAC 59.766 50.000 0.00 0.00 0.00 2.78
42 43 1.476488 GGGAATGGTGGAATGGAAACG 59.524 52.381 0.00 0.00 0.00 3.60
43 44 2.167662 GGAATGGTGGAATGGAAACGT 58.832 47.619 0.00 0.00 0.00 3.99
44 45 3.349022 GGAATGGTGGAATGGAAACGTA 58.651 45.455 0.00 0.00 0.00 3.57
45 46 3.951680 GGAATGGTGGAATGGAAACGTAT 59.048 43.478 0.00 0.00 0.00 3.06
46 47 5.127491 GGAATGGTGGAATGGAAACGTATA 58.873 41.667 0.00 0.00 0.00 1.47
47 48 5.768164 GGAATGGTGGAATGGAAACGTATAT 59.232 40.000 0.00 0.00 0.00 0.86
48 49 6.072673 GGAATGGTGGAATGGAAACGTATATC 60.073 42.308 0.00 0.00 0.00 1.63
49 50 5.623956 TGGTGGAATGGAAACGTATATCT 57.376 39.130 0.00 0.00 0.00 1.98
50 51 5.996644 TGGTGGAATGGAAACGTATATCTT 58.003 37.500 0.00 0.00 0.00 2.40
51 52 6.053005 TGGTGGAATGGAAACGTATATCTTC 58.947 40.000 0.00 0.00 0.00 2.87
52 53 5.176958 GGTGGAATGGAAACGTATATCTTCG 59.823 44.000 0.00 0.00 0.00 3.79
53 54 5.751990 GTGGAATGGAAACGTATATCTTCGT 59.248 40.000 0.00 0.00 42.12 3.85
55 56 6.477688 TGGAATGGAAACGTATATCTTCGTTC 59.522 38.462 11.59 0.00 46.95 3.95
56 57 6.700520 GGAATGGAAACGTATATCTTCGTTCT 59.299 38.462 11.59 5.21 46.95 3.01
57 58 7.306632 GGAATGGAAACGTATATCTTCGTTCTG 60.307 40.741 11.59 0.00 46.95 3.02
58 59 6.198650 TGGAAACGTATATCTTCGTTCTGA 57.801 37.500 11.59 0.00 46.95 3.27
59 60 6.623486 TGGAAACGTATATCTTCGTTCTGAA 58.377 36.000 11.59 0.00 46.95 3.02
60 61 7.262772 TGGAAACGTATATCTTCGTTCTGAAT 58.737 34.615 11.59 0.19 46.95 2.57
61 62 7.434307 TGGAAACGTATATCTTCGTTCTGAATC 59.566 37.037 11.59 7.04 46.95 2.52
62 63 7.096147 GGAAACGTATATCTTCGTTCTGAATCC 60.096 40.741 11.59 10.72 46.95 3.01
63 64 5.770417 ACGTATATCTTCGTTCTGAATCCC 58.230 41.667 0.00 0.00 36.93 3.85
64 65 5.162075 CGTATATCTTCGTTCTGAATCCCC 58.838 45.833 0.00 0.00 35.63 4.81
65 66 4.625607 ATATCTTCGTTCTGAATCCCCC 57.374 45.455 0.00 0.00 35.63 5.40
66 67 1.651737 TCTTCGTTCTGAATCCCCCA 58.348 50.000 0.00 0.00 35.63 4.96
67 68 1.982226 TCTTCGTTCTGAATCCCCCAA 59.018 47.619 0.00 0.00 35.63 4.12
68 69 2.027192 TCTTCGTTCTGAATCCCCCAAG 60.027 50.000 0.00 0.00 35.63 3.61
69 70 1.651737 TCGTTCTGAATCCCCCAAGA 58.348 50.000 0.00 0.00 0.00 3.02
70 71 1.278127 TCGTTCTGAATCCCCCAAGAC 59.722 52.381 0.00 0.00 0.00 3.01
71 72 1.739067 GTTCTGAATCCCCCAAGACG 58.261 55.000 0.00 0.00 0.00 4.18
72 73 0.035439 TTCTGAATCCCCCAAGACGC 60.035 55.000 0.00 0.00 0.00 5.19
73 74 0.909610 TCTGAATCCCCCAAGACGCT 60.910 55.000 0.00 0.00 0.00 5.07
74 75 0.462759 CTGAATCCCCCAAGACGCTC 60.463 60.000 0.00 0.00 0.00 5.03
75 76 1.521681 GAATCCCCCAAGACGCTCG 60.522 63.158 0.00 0.00 0.00 5.03
76 77 3.682292 AATCCCCCAAGACGCTCGC 62.682 63.158 0.00 0.00 0.00 5.03
79 80 4.821589 CCCCAAGACGCTCGCCTC 62.822 72.222 0.00 0.00 0.00 4.70
80 81 4.069232 CCCAAGACGCTCGCCTCA 62.069 66.667 0.00 0.00 0.00 3.86
81 82 2.811317 CCAAGACGCTCGCCTCAC 60.811 66.667 0.00 0.00 0.00 3.51
82 83 2.259818 CAAGACGCTCGCCTCACT 59.740 61.111 0.00 0.00 0.00 3.41
83 84 1.506718 CAAGACGCTCGCCTCACTA 59.493 57.895 0.00 0.00 0.00 2.74
84 85 0.109272 CAAGACGCTCGCCTCACTAA 60.109 55.000 0.00 0.00 0.00 2.24
85 86 0.818296 AAGACGCTCGCCTCACTAAT 59.182 50.000 0.00 0.00 0.00 1.73
86 87 0.101399 AGACGCTCGCCTCACTAATG 59.899 55.000 0.00 0.00 0.00 1.90
87 88 0.100682 GACGCTCGCCTCACTAATGA 59.899 55.000 0.00 0.00 0.00 2.57
88 89 0.747255 ACGCTCGCCTCACTAATGAT 59.253 50.000 0.00 0.00 33.22 2.45
89 90 1.135046 CGCTCGCCTCACTAATGATG 58.865 55.000 0.00 0.00 33.22 3.07
90 91 0.864455 GCTCGCCTCACTAATGATGC 59.136 55.000 0.00 0.00 41.60 3.91
91 92 1.539929 GCTCGCCTCACTAATGATGCT 60.540 52.381 0.15 0.00 42.52 3.79
92 93 2.288457 GCTCGCCTCACTAATGATGCTA 60.288 50.000 0.15 0.00 42.52 3.49
93 94 3.800261 GCTCGCCTCACTAATGATGCTAA 60.800 47.826 0.15 0.00 42.52 3.09
94 95 4.564041 CTCGCCTCACTAATGATGCTAAT 58.436 43.478 0.15 0.00 42.52 1.73
95 96 4.560128 TCGCCTCACTAATGATGCTAATC 58.440 43.478 0.15 0.00 42.52 1.75
96 97 4.281941 TCGCCTCACTAATGATGCTAATCT 59.718 41.667 0.15 0.00 42.52 2.40
97 98 4.624882 CGCCTCACTAATGATGCTAATCTC 59.375 45.833 0.15 0.00 42.52 2.75
98 99 4.934602 GCCTCACTAATGATGCTAATCTCC 59.065 45.833 0.00 0.00 41.73 3.71
99 100 5.279910 GCCTCACTAATGATGCTAATCTCCT 60.280 44.000 0.00 0.00 41.73 3.69
100 101 6.164876 CCTCACTAATGATGCTAATCTCCTG 58.835 44.000 0.00 0.00 33.22 3.86
101 102 6.106648 TCACTAATGATGCTAATCTCCTGG 57.893 41.667 0.00 0.00 33.61 4.45
102 103 5.012458 TCACTAATGATGCTAATCTCCTGGG 59.988 44.000 0.00 0.00 33.61 4.45
103 104 5.012458 CACTAATGATGCTAATCTCCTGGGA 59.988 44.000 0.00 0.00 33.61 4.37
104 105 5.608437 ACTAATGATGCTAATCTCCTGGGAA 59.392 40.000 0.00 0.00 33.61 3.97
105 106 5.393068 AATGATGCTAATCTCCTGGGAAA 57.607 39.130 0.00 0.00 33.61 3.13
106 107 5.595814 ATGATGCTAATCTCCTGGGAAAT 57.404 39.130 0.00 0.00 33.61 2.17
107 108 5.393068 TGATGCTAATCTCCTGGGAAATT 57.607 39.130 0.00 0.00 33.61 1.82
108 109 5.769835 TGATGCTAATCTCCTGGGAAATTT 58.230 37.500 0.00 0.00 33.61 1.82
109 110 5.595542 TGATGCTAATCTCCTGGGAAATTTG 59.404 40.000 0.00 0.00 33.61 2.32
110 111 5.191727 TGCTAATCTCCTGGGAAATTTGA 57.808 39.130 0.00 0.00 0.00 2.69
111 112 5.579047 TGCTAATCTCCTGGGAAATTTGAA 58.421 37.500 0.00 0.00 0.00 2.69
112 113 6.197168 TGCTAATCTCCTGGGAAATTTGAAT 58.803 36.000 0.00 0.00 0.00 2.57
113 114 6.097270 TGCTAATCTCCTGGGAAATTTGAATG 59.903 38.462 0.00 0.00 0.00 2.67
114 115 5.945144 AATCTCCTGGGAAATTTGAATGG 57.055 39.130 0.00 0.00 0.00 3.16
115 116 4.673328 TCTCCTGGGAAATTTGAATGGA 57.327 40.909 0.00 0.00 0.00 3.41
116 117 4.603131 TCTCCTGGGAAATTTGAATGGAG 58.397 43.478 15.32 15.32 40.64 3.86
117 118 3.099141 TCCTGGGAAATTTGAATGGAGC 58.901 45.455 0.00 0.00 0.00 4.70
118 119 2.159198 CCTGGGAAATTTGAATGGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
119 120 1.204467 TGGGAAATTTGAATGGAGCGC 59.796 47.619 0.00 0.00 0.00 5.92
120 121 1.204467 GGGAAATTTGAATGGAGCGCA 59.796 47.619 11.47 0.00 0.00 6.09
121 122 2.353605 GGGAAATTTGAATGGAGCGCAA 60.354 45.455 11.47 0.00 0.00 4.85
122 123 3.524541 GGAAATTTGAATGGAGCGCAAT 58.475 40.909 11.47 0.00 0.00 3.56
123 124 3.307782 GGAAATTTGAATGGAGCGCAATG 59.692 43.478 11.47 0.00 0.00 2.82
124 125 1.930567 ATTTGAATGGAGCGCAATGC 58.069 45.000 11.47 0.00 46.98 3.56
135 136 2.179949 GCGCAATGCTAGAGTTTTCC 57.820 50.000 0.30 0.00 41.73 3.13
136 137 1.529826 GCGCAATGCTAGAGTTTTCCG 60.530 52.381 0.30 0.00 41.73 4.30
137 138 1.529826 CGCAATGCTAGAGTTTTCCGC 60.530 52.381 2.94 0.00 0.00 5.54
138 139 1.468520 GCAATGCTAGAGTTTTCCGCA 59.531 47.619 0.00 0.00 35.56 5.69
139 140 2.095263 GCAATGCTAGAGTTTTCCGCAA 60.095 45.455 0.00 0.00 35.00 4.85
140 141 3.492313 CAATGCTAGAGTTTTCCGCAAC 58.508 45.455 0.00 0.00 35.00 4.17
141 142 2.248280 TGCTAGAGTTTTCCGCAACA 57.752 45.000 0.00 0.00 30.31 3.33
142 143 1.871039 TGCTAGAGTTTTCCGCAACAC 59.129 47.619 0.00 0.00 30.31 3.32
143 144 1.197036 GCTAGAGTTTTCCGCAACACC 59.803 52.381 0.00 0.00 0.00 4.16
144 145 1.459592 CTAGAGTTTTCCGCAACACCG 59.540 52.381 0.00 0.00 0.00 4.94
145 146 1.370051 GAGTTTTCCGCAACACCGC 60.370 57.895 0.00 0.00 0.00 5.68
146 147 2.354188 GTTTTCCGCAACACCGCC 60.354 61.111 0.00 0.00 0.00 6.13
147 148 3.955101 TTTTCCGCAACACCGCCG 61.955 61.111 0.00 0.00 0.00 6.46
154 155 3.419759 CAACACCGCCGCACCTAC 61.420 66.667 0.00 0.00 0.00 3.18
162 163 4.824166 CCGCACCTACGACGGTCG 62.824 72.222 27.33 27.33 46.93 4.79
174 175 3.663464 CGACGGTCGTCATTAGTAAGA 57.337 47.619 21.68 0.00 44.77 2.10
175 176 4.206698 CGACGGTCGTCATTAGTAAGAT 57.793 45.455 21.68 0.00 44.77 2.40
176 177 5.334435 CGACGGTCGTCATTAGTAAGATA 57.666 43.478 21.68 0.00 44.77 1.98
177 178 5.741425 CGACGGTCGTCATTAGTAAGATAA 58.259 41.667 21.68 0.00 44.77 1.75
178 179 6.194463 CGACGGTCGTCATTAGTAAGATAAA 58.806 40.000 21.68 0.00 44.77 1.40
179 180 6.688385 CGACGGTCGTCATTAGTAAGATAAAA 59.312 38.462 21.68 0.00 44.77 1.52
180 181 7.097128 CGACGGTCGTCATTAGTAAGATAAAAG 60.097 40.741 21.68 0.00 44.77 2.27
181 182 7.765307 ACGGTCGTCATTAGTAAGATAAAAGA 58.235 34.615 0.00 0.00 0.00 2.52
182 183 7.914346 ACGGTCGTCATTAGTAAGATAAAAGAG 59.086 37.037 0.00 0.00 0.00 2.85
183 184 7.378995 CGGTCGTCATTAGTAAGATAAAAGAGG 59.621 40.741 0.00 0.00 0.00 3.69
184 185 8.411683 GGTCGTCATTAGTAAGATAAAAGAGGA 58.588 37.037 0.00 0.00 0.00 3.71
185 186 9.453325 GTCGTCATTAGTAAGATAAAAGAGGAG 57.547 37.037 0.00 0.00 0.00 3.69
186 187 9.186837 TCGTCATTAGTAAGATAAAAGAGGAGT 57.813 33.333 0.00 0.00 0.00 3.85
187 188 9.804758 CGTCATTAGTAAGATAAAAGAGGAGTT 57.195 33.333 0.00 0.00 0.00 3.01
192 193 7.674471 AGTAAGATAAAAGAGGAGTTGTTGC 57.326 36.000 0.00 0.00 0.00 4.17
193 194 7.454225 AGTAAGATAAAAGAGGAGTTGTTGCT 58.546 34.615 0.00 0.00 0.00 3.91
194 195 7.939588 AGTAAGATAAAAGAGGAGTTGTTGCTT 59.060 33.333 0.00 0.00 0.00 3.91
195 196 7.588497 AAGATAAAAGAGGAGTTGTTGCTTT 57.412 32.000 0.00 0.00 0.00 3.51
196 197 6.974965 AGATAAAAGAGGAGTTGTTGCTTTG 58.025 36.000 0.00 0.00 0.00 2.77
197 198 4.391405 AAAAGAGGAGTTGTTGCTTTGG 57.609 40.909 0.00 0.00 0.00 3.28
198 199 1.986882 AGAGGAGTTGTTGCTTTGGG 58.013 50.000 0.00 0.00 0.00 4.12
199 200 0.315251 GAGGAGTTGTTGCTTTGGGC 59.685 55.000 0.00 0.00 42.22 5.36
200 201 1.007387 GGAGTTGTTGCTTTGGGCG 60.007 57.895 0.00 0.00 45.43 6.13
201 202 1.733526 GAGTTGTTGCTTTGGGCGT 59.266 52.632 0.00 0.00 45.43 5.68
202 203 0.102300 GAGTTGTTGCTTTGGGCGTT 59.898 50.000 0.00 0.00 45.43 4.84
203 204 0.179113 AGTTGTTGCTTTGGGCGTTG 60.179 50.000 0.00 0.00 45.43 4.10
204 205 1.142748 TTGTTGCTTTGGGCGTTGG 59.857 52.632 0.00 0.00 45.43 3.77
205 206 2.661537 GTTGCTTTGGGCGTTGGC 60.662 61.111 0.00 0.00 45.43 4.52
206 207 4.277593 TTGCTTTGGGCGTTGGCG 62.278 61.111 0.00 0.00 45.43 5.69
227 228 3.871775 CGCCAAGCATTTGAGTGTT 57.128 47.368 0.00 0.00 36.36 3.32
228 229 1.411394 CGCCAAGCATTTGAGTGTTG 58.589 50.000 0.00 0.00 36.36 3.33
229 230 1.269206 CGCCAAGCATTTGAGTGTTGT 60.269 47.619 0.00 0.00 36.36 3.32
230 231 2.031245 CGCCAAGCATTTGAGTGTTGTA 60.031 45.455 0.00 0.00 36.36 2.41
231 232 3.549827 CGCCAAGCATTTGAGTGTTGTAA 60.550 43.478 0.00 0.00 36.36 2.41
232 233 4.559153 GCCAAGCATTTGAGTGTTGTAAT 58.441 39.130 0.00 0.00 36.36 1.89
233 234 4.386652 GCCAAGCATTTGAGTGTTGTAATG 59.613 41.667 0.00 0.00 36.36 1.90
236 237 2.916716 GCATTTGAGTGTTGTAATGCCG 59.083 45.455 0.00 0.00 44.28 5.69
237 238 2.697431 TTTGAGTGTTGTAATGCCGC 57.303 45.000 0.00 0.00 0.00 6.53
238 239 0.515127 TTGAGTGTTGTAATGCCGCG 59.485 50.000 0.00 0.00 0.00 6.46
239 240 0.319986 TGAGTGTTGTAATGCCGCGA 60.320 50.000 8.23 0.00 0.00 5.87
240 241 0.370273 GAGTGTTGTAATGCCGCGAG 59.630 55.000 8.23 0.00 0.00 5.03
241 242 0.037697 AGTGTTGTAATGCCGCGAGA 60.038 50.000 8.23 0.00 0.00 4.04
242 243 0.370273 GTGTTGTAATGCCGCGAGAG 59.630 55.000 8.23 0.00 0.00 3.20
243 244 0.037697 TGTTGTAATGCCGCGAGAGT 60.038 50.000 8.23 0.00 0.00 3.24
244 245 1.202817 TGTTGTAATGCCGCGAGAGTA 59.797 47.619 8.23 0.00 0.00 2.59
245 246 1.852895 GTTGTAATGCCGCGAGAGTAG 59.147 52.381 8.23 0.00 0.00 2.57
246 247 1.385528 TGTAATGCCGCGAGAGTAGA 58.614 50.000 8.23 0.00 0.00 2.59
247 248 1.954382 TGTAATGCCGCGAGAGTAGAT 59.046 47.619 8.23 0.00 0.00 1.98
248 249 2.361119 TGTAATGCCGCGAGAGTAGATT 59.639 45.455 8.23 0.00 0.00 2.40
249 250 2.604046 AATGCCGCGAGAGTAGATTT 57.396 45.000 8.23 0.00 0.00 2.17
250 251 2.604046 ATGCCGCGAGAGTAGATTTT 57.396 45.000 8.23 0.00 0.00 1.82
251 252 3.728076 ATGCCGCGAGAGTAGATTTTA 57.272 42.857 8.23 0.00 0.00 1.52
252 253 3.728076 TGCCGCGAGAGTAGATTTTAT 57.272 42.857 8.23 0.00 0.00 1.40
253 254 4.054780 TGCCGCGAGAGTAGATTTTATT 57.945 40.909 8.23 0.00 0.00 1.40
254 255 4.439057 TGCCGCGAGAGTAGATTTTATTT 58.561 39.130 8.23 0.00 0.00 1.40
255 256 4.506654 TGCCGCGAGAGTAGATTTTATTTC 59.493 41.667 8.23 0.00 0.00 2.17
256 257 4.745620 GCCGCGAGAGTAGATTTTATTTCT 59.254 41.667 8.23 0.00 0.00 2.52
257 258 5.234543 GCCGCGAGAGTAGATTTTATTTCTT 59.765 40.000 8.23 0.00 0.00 2.52
258 259 6.641062 CCGCGAGAGTAGATTTTATTTCTTG 58.359 40.000 8.23 0.00 0.00 3.02
259 260 6.123441 CGCGAGAGTAGATTTTATTTCTTGC 58.877 40.000 0.00 2.24 38.24 4.01
260 261 6.423042 GCGAGAGTAGATTTTATTTCTTGCC 58.577 40.000 0.00 0.00 36.52 4.52
261 262 6.037172 GCGAGAGTAGATTTTATTTCTTGCCA 59.963 38.462 0.00 0.00 36.52 4.92
262 263 7.402640 CGAGAGTAGATTTTATTTCTTGCCAC 58.597 38.462 0.00 0.00 0.00 5.01
263 264 7.278868 CGAGAGTAGATTTTATTTCTTGCCACT 59.721 37.037 0.00 0.00 0.00 4.00
264 265 8.870075 AGAGTAGATTTTATTTCTTGCCACTT 57.130 30.769 0.00 0.00 0.00 3.16
265 266 8.951243 AGAGTAGATTTTATTTCTTGCCACTTC 58.049 33.333 0.00 0.00 0.00 3.01
266 267 7.752695 AGTAGATTTTATTTCTTGCCACTTCG 58.247 34.615 0.00 0.00 0.00 3.79
267 268 6.575162 AGATTTTATTTCTTGCCACTTCGT 57.425 33.333 0.00 0.00 0.00 3.85
268 269 6.381801 AGATTTTATTTCTTGCCACTTCGTG 58.618 36.000 0.00 0.00 0.00 4.35
278 279 3.906660 CACTTCGTGGCCTGTCTAA 57.093 52.632 3.32 0.00 0.00 2.10
279 280 2.163818 CACTTCGTGGCCTGTCTAAA 57.836 50.000 3.32 0.00 0.00 1.85
280 281 2.699954 CACTTCGTGGCCTGTCTAAAT 58.300 47.619 3.32 0.00 0.00 1.40
281 282 2.673368 CACTTCGTGGCCTGTCTAAATC 59.327 50.000 3.32 0.00 0.00 2.17
282 283 2.567615 ACTTCGTGGCCTGTCTAAATCT 59.432 45.455 3.32 0.00 0.00 2.40
283 284 3.008049 ACTTCGTGGCCTGTCTAAATCTT 59.992 43.478 3.32 0.00 0.00 2.40
284 285 3.695830 TCGTGGCCTGTCTAAATCTTT 57.304 42.857 3.32 0.00 0.00 2.52
285 286 4.015872 TCGTGGCCTGTCTAAATCTTTT 57.984 40.909 3.32 0.00 0.00 2.27
286 287 4.394729 TCGTGGCCTGTCTAAATCTTTTT 58.605 39.130 3.32 0.00 0.00 1.94
287 288 4.454504 TCGTGGCCTGTCTAAATCTTTTTC 59.545 41.667 3.32 0.00 0.00 2.29
288 289 4.455877 CGTGGCCTGTCTAAATCTTTTTCT 59.544 41.667 3.32 0.00 0.00 2.52
289 290 5.048713 CGTGGCCTGTCTAAATCTTTTTCTT 60.049 40.000 3.32 0.00 0.00 2.52
290 291 6.148811 CGTGGCCTGTCTAAATCTTTTTCTTA 59.851 38.462 3.32 0.00 0.00 2.10
291 292 7.308348 CGTGGCCTGTCTAAATCTTTTTCTTAA 60.308 37.037 3.32 0.00 0.00 1.85
292 293 8.523658 GTGGCCTGTCTAAATCTTTTTCTTAAT 58.476 33.333 3.32 0.00 0.00 1.40
293 294 8.739972 TGGCCTGTCTAAATCTTTTTCTTAATC 58.260 33.333 3.32 0.00 0.00 1.75
294 295 8.739972 GGCCTGTCTAAATCTTTTTCTTAATCA 58.260 33.333 0.00 0.00 0.00 2.57
305 306 9.947433 ATCTTTTTCTTAATCAATGAAATGGCA 57.053 25.926 0.00 0.00 31.08 4.92
306 307 9.775854 TCTTTTTCTTAATCAATGAAATGGCAA 57.224 25.926 0.00 0.00 31.08 4.52
310 311 9.947433 TTTCTTAATCAATGAAATGGCAAATCT 57.053 25.926 0.00 0.00 0.00 2.40
311 312 9.947433 TTCTTAATCAATGAAATGGCAAATCTT 57.053 25.926 0.00 0.00 0.00 2.40
312 313 9.947433 TCTTAATCAATGAAATGGCAAATCTTT 57.053 25.926 0.00 0.00 0.00 2.52
315 316 6.243811 TCAATGAAATGGCAAATCTTTTGC 57.756 33.333 14.88 14.88 44.22 3.68
325 326 5.482686 GCAAATCTTTTGCCTTGTTTCAA 57.517 34.783 12.74 0.00 39.38 2.69
326 327 5.878133 GCAAATCTTTTGCCTTGTTTCAAA 58.122 33.333 12.74 0.00 39.38 2.69
327 328 6.320944 GCAAATCTTTTGCCTTGTTTCAAAA 58.679 32.000 12.74 0.00 39.13 2.44
328 329 6.805760 GCAAATCTTTTGCCTTGTTTCAAAAA 59.194 30.769 12.74 0.00 40.36 1.94
356 357 1.202533 CCGAAATAGCAGGACCATCGT 60.203 52.381 0.00 0.00 0.00 3.73
365 366 1.221021 GGACCATCGTTCCTCCCAC 59.779 63.158 0.00 0.00 0.00 4.61
373 374 3.781307 TTCCTCCCACCGATGGCG 61.781 66.667 0.00 0.00 45.76 5.69
473 474 1.884926 CGATTGCCTTCCTCCTCGC 60.885 63.158 0.00 0.00 0.00 5.03
573 580 2.352032 CCTCGCGTTCTCCTCCCTT 61.352 63.158 5.77 0.00 0.00 3.95
594 601 2.775911 TCTCTGCCATCAACCTCTTG 57.224 50.000 0.00 0.00 0.00 3.02
596 603 2.842496 TCTCTGCCATCAACCTCTTGAT 59.158 45.455 0.00 0.00 46.36 2.57
627 634 3.633089 GCCGCCCGCGTATGTAAC 61.633 66.667 4.92 0.00 37.81 2.50
676 683 4.360964 TCACCGGGTACGTTGCGG 62.361 66.667 6.32 0.00 38.78 5.69
710 717 6.883217 TCCGATAACCGAACTCTTATATAGCT 59.117 38.462 0.00 0.00 41.76 3.32
711 718 8.043113 TCCGATAACCGAACTCTTATATAGCTA 58.957 37.037 0.00 0.00 41.76 3.32
714 721 6.587206 AACCGAACTCTTATATAGCTACCC 57.413 41.667 0.00 0.00 0.00 3.69
797 3898 2.680352 GAGTCCACTCCTCCGCCA 60.680 66.667 0.00 0.00 37.02 5.69
846 3953 3.395702 CGGACCCCATCCCGTTCA 61.396 66.667 0.00 0.00 46.04 3.18
847 3954 2.271173 GGACCCCATCCCGTTCAC 59.729 66.667 0.00 0.00 42.46 3.18
848 3955 2.125269 GACCCCATCCCGTTCACG 60.125 66.667 0.00 0.00 39.44 4.35
895 4003 1.683707 AGGAGCAGCGACCTCATCA 60.684 57.895 8.14 0.00 0.00 3.07
905 4013 2.227865 GCGACCTCATCACTAGGAGATC 59.772 54.545 0.00 0.00 35.51 2.75
920 4037 4.096003 ATCGAAGCCCACCCCACG 62.096 66.667 0.00 0.00 0.00 4.94
935 4052 4.673298 ACGCCGACGCCATTGACA 62.673 61.111 0.00 0.00 45.53 3.58
942 4059 2.047274 CGCCATTGACACCCGAGT 60.047 61.111 0.00 0.00 0.00 4.18
944 4061 1.003839 GCCATTGACACCCGAGTCA 60.004 57.895 0.00 0.00 46.12 3.41
957 4082 1.451028 GAGTCACCAGCAGCATCCC 60.451 63.158 0.00 0.00 0.00 3.85
1093 4218 3.558829 ACTTGTCAGCATAATCATGAGCG 59.441 43.478 0.09 0.00 33.67 5.03
1131 4256 0.824109 TGGTCATCGATCCGAAGCTT 59.176 50.000 0.00 0.00 39.99 3.74
1194 4319 2.433145 CATGTCACGGAGCTGCGT 60.433 61.111 28.56 28.56 0.00 5.24
1221 4346 2.644212 CGCTGACCCTCTGCAGACT 61.644 63.158 13.74 0.00 40.74 3.24
1237 4362 2.034687 CTGAGTGCCCCAAGGTGG 59.965 66.667 0.00 0.00 37.25 4.61
1238 4363 2.776526 TGAGTGCCCCAAGGTGGT 60.777 61.111 0.00 0.00 35.17 4.16
1239 4364 2.282462 GAGTGCCCCAAGGTGGTG 60.282 66.667 0.00 0.00 35.17 4.17
1240 4365 3.103213 AGTGCCCCAAGGTGGTGT 61.103 61.111 0.00 0.00 35.17 4.16
1247 4372 0.181587 CCCAAGGTGGTGTGTGTACA 59.818 55.000 0.00 0.00 35.17 2.90
1268 4393 3.706373 TTCGGTCCCAGCTCAGCC 61.706 66.667 0.00 0.00 0.00 4.85
1319 4444 1.602237 GACGAATCCAAGGGGCTCA 59.398 57.895 0.00 0.00 0.00 4.26
1432 4557 7.064728 GCAATAATCGGAGAATATCCCTTGTAC 59.935 40.741 0.00 0.00 46.50 2.90
1528 4653 1.963464 TTGAAGGGGATACGGCGACC 61.963 60.000 16.62 13.78 37.60 4.79
1765 4890 2.425312 CTCTCAGCTGACGTATGAAGGT 59.575 50.000 13.74 0.00 0.00 3.50
1768 4893 3.617284 TCAGCTGACGTATGAAGGTCTA 58.383 45.455 13.74 0.00 40.42 2.59
1801 4926 2.291741 GCTGGAAATTCATGACGGATCC 59.708 50.000 0.00 0.00 0.00 3.36
1813 4938 1.787847 CGGATCCGTGCAAGTTGAC 59.212 57.895 26.35 1.36 34.35 3.18
1965 5091 3.796717 CGTCTATTCAGCAAGATTACGCA 59.203 43.478 0.00 0.00 0.00 5.24
2031 5157 5.107065 GGATTTTGTGAAGAGGTTACACTCG 60.107 44.000 0.00 0.00 42.31 4.18
2096 5222 1.995376 TCCTTTGCTGGAAAACCCTC 58.005 50.000 0.00 0.00 35.38 4.30
2124 5250 1.269517 GCCCGAGTAGAGATTGAGCAG 60.270 57.143 0.00 0.00 0.00 4.24
2127 5253 3.131223 CCCGAGTAGAGATTGAGCAGAAA 59.869 47.826 0.00 0.00 0.00 2.52
2140 5266 0.378610 GCAGAAAATACTGGAGGCGC 59.621 55.000 0.00 0.00 38.22 6.53
2141 5267 0.652592 CAGAAAATACTGGAGGCGCG 59.347 55.000 0.00 0.00 34.64 6.86
2154 5280 1.153429 GGCGCGGGACTATGAAACT 60.153 57.895 8.83 0.00 0.00 2.66
2202 5328 4.292186 ACAGAAGCAAGAGCCTATTGAA 57.708 40.909 2.67 0.00 43.56 2.69
2205 5331 4.013050 AGAAGCAAGAGCCTATTGAAACC 58.987 43.478 2.67 0.00 43.56 3.27
2208 5334 3.055385 AGCAAGAGCCTATTGAAACCGTA 60.055 43.478 2.67 0.00 43.56 4.02
2226 5352 1.798813 GTACTTCGCCTTCTGGTGTTG 59.201 52.381 0.00 0.00 43.94 3.33
2248 5374 1.555967 TTCCCTTACAAATGCTGGGC 58.444 50.000 0.00 0.00 37.83 5.36
2255 5381 2.283101 AAATGCTGGGCTGCCGAA 60.283 55.556 13.40 2.26 0.00 4.30
2337 5463 5.885912 GCCCTTGTTATACAATCTGGAGAAA 59.114 40.000 0.00 0.00 37.48 2.52
2466 5592 0.037697 ACGTCTTTGCTGGATACGCA 60.038 50.000 0.00 0.00 42.69 5.24
2476 5602 2.799917 GCTGGATACGCACCTCTTAGTG 60.800 54.545 0.00 0.00 40.88 2.74
2478 5604 2.426024 TGGATACGCACCTCTTAGTGTC 59.574 50.000 0.00 0.00 40.04 3.67
2481 5607 1.177256 ACGCACCTCTTAGTGTCCGT 61.177 55.000 0.00 0.00 40.04 4.69
2495 5621 0.798776 GTCCGTCTTGTTCAGCATGG 59.201 55.000 0.00 0.00 36.16 3.66
2496 5622 0.321564 TCCGTCTTGTTCAGCATGGG 60.322 55.000 0.00 0.00 36.16 4.00
2544 5670 7.048629 TGAAGAAGTGTTGAAATTATTGCCA 57.951 32.000 0.00 0.00 0.00 4.92
2564 5690 0.179936 GGCCCTCATCTGGACTTGAG 59.820 60.000 0.00 0.00 39.25 3.02
2570 5696 4.022603 CCTCATCTGGACTTGAGAAGAGA 58.977 47.826 0.00 0.00 41.53 3.10
2572 5698 5.221303 CCTCATCTGGACTTGAGAAGAGATC 60.221 48.000 0.00 0.00 41.53 2.75
2626 5926 2.993471 GCCGGGGCACAACAGAATG 61.993 63.158 2.18 0.00 41.40 2.67
2645 5945 4.308458 CGACAGGGTTGGCCGTCA 62.308 66.667 0.00 0.00 34.97 4.35
2656 5956 1.890510 GGCCGTCACTCCGTTGTTT 60.891 57.895 0.00 0.00 0.00 2.83
2878 6517 1.066908 CAAAGCATCACAAACCCGTGT 59.933 47.619 0.00 0.00 38.12 4.49
2898 6537 2.850568 GTCCAGGAGGGGATTTTCCTTA 59.149 50.000 0.00 0.00 41.86 2.69
2906 6545 5.360999 GGAGGGGATTTTCCTTATTCAGTTG 59.639 44.000 0.00 0.00 36.57 3.16
2964 6605 1.057822 CGTGCTCTTGCGTTCATCG 59.942 57.895 0.00 0.00 43.34 3.84
3000 6641 1.996292 TCTTGTCAGATAGCACGTGC 58.004 50.000 32.79 32.79 42.49 5.34
3004 6645 0.716108 GTCAGATAGCACGTGCACAC 59.284 55.000 39.21 27.59 45.16 3.82
3006 6647 0.670239 CAGATAGCACGTGCACACCA 60.670 55.000 39.21 20.05 45.16 4.17
3026 6667 4.098044 ACCAATATCTCCTGTACAGACACG 59.902 45.833 24.68 7.47 0.00 4.49
3034 6675 1.474478 CTGTACAGACACGGATGCTCT 59.526 52.381 18.45 0.00 0.00 4.09
3044 6685 1.089112 CGGATGCTCTGCAAACATCA 58.911 50.000 19.26 2.04 43.62 3.07
3049 6690 5.653507 GGATGCTCTGCAAACATCAATTTA 58.346 37.500 19.26 0.00 43.62 1.40
3050 6691 5.747197 GGATGCTCTGCAAACATCAATTTAG 59.253 40.000 19.26 0.00 43.62 1.85
3119 6760 7.661127 TCAATTTACGCACTTATGTACAGTT 57.339 32.000 0.33 0.00 0.00 3.16
3142 6784 0.379316 GTCCCACCGTTCAACACAAC 59.621 55.000 0.00 0.00 0.00 3.32
3143 6785 0.035343 TCCCACCGTTCAACACAACA 60.035 50.000 0.00 0.00 0.00 3.33
3144 6786 0.811915 CCCACCGTTCAACACAACAA 59.188 50.000 0.00 0.00 0.00 2.83
3146 6788 2.159170 CCCACCGTTCAACACAACAATT 60.159 45.455 0.00 0.00 0.00 2.32
3195 6837 2.737679 GCCAGCATCAGATTCTTTTGCC 60.738 50.000 11.96 0.00 33.85 4.52
3205 6847 3.575687 AGATTCTTTTGCCAACTCCAAGG 59.424 43.478 0.00 0.00 0.00 3.61
3207 6849 2.586425 TCTTTTGCCAACTCCAAGGAG 58.414 47.619 14.44 14.44 46.91 3.69
3246 6888 1.402787 AAACCAAGCCACAGTCCTTG 58.597 50.000 4.21 4.21 38.48 3.61
3258 6900 0.605589 AGTCCTTGAACTGCCTCGAG 59.394 55.000 5.13 5.13 0.00 4.04
3282 6925 4.982241 TCTCATGACTCTTCAGGGTTTT 57.018 40.909 0.00 0.00 34.15 2.43
3283 6926 4.645535 TCTCATGACTCTTCAGGGTTTTG 58.354 43.478 0.00 0.00 34.15 2.44
3284 6927 4.347876 TCTCATGACTCTTCAGGGTTTTGA 59.652 41.667 0.00 0.00 34.15 2.69
3285 6928 4.389374 TCATGACTCTTCAGGGTTTTGAC 58.611 43.478 0.00 0.00 34.15 3.18
3286 6929 3.924114 TGACTCTTCAGGGTTTTGACA 57.076 42.857 0.00 0.00 0.00 3.58
3288 6931 4.792068 TGACTCTTCAGGGTTTTGACATT 58.208 39.130 0.00 0.00 0.00 2.71
3289 6932 4.821805 TGACTCTTCAGGGTTTTGACATTC 59.178 41.667 0.00 0.00 0.00 2.67
3291 6934 5.449553 ACTCTTCAGGGTTTTGACATTCTT 58.550 37.500 0.00 0.00 0.00 2.52
3292 6935 5.893824 ACTCTTCAGGGTTTTGACATTCTTT 59.106 36.000 0.00 0.00 0.00 2.52
3293 6936 6.381133 ACTCTTCAGGGTTTTGACATTCTTTT 59.619 34.615 0.00 0.00 0.00 2.27
3294 6937 6.572519 TCTTCAGGGTTTTGACATTCTTTTG 58.427 36.000 0.00 0.00 0.00 2.44
3295 6938 5.930837 TCAGGGTTTTGACATTCTTTTGT 57.069 34.783 0.00 0.00 0.00 2.83
3296 6939 5.901552 TCAGGGTTTTGACATTCTTTTGTC 58.098 37.500 0.00 0.00 45.05 3.18
3300 6943 5.979517 GGGTTTTGACATTCTTTTGTCTCTG 59.020 40.000 6.20 0.00 45.07 3.35
3302 6945 7.201785 GGGTTTTGACATTCTTTTGTCTCTGTA 60.202 37.037 6.20 0.00 45.07 2.74
3320 6963 9.495754 GTCTCTGTATAAACATCTTTCATTTGC 57.504 33.333 0.00 0.00 34.37 3.68
3324 6967 9.294030 CTGTATAAACATCTTTCATTTGCTTCC 57.706 33.333 0.00 0.00 34.37 3.46
3340 8534 2.289002 GCTTCCATCCATAAGCTTGTCG 59.711 50.000 9.86 0.00 43.77 4.35
3343 8537 2.499693 TCCATCCATAAGCTTGTCGTGA 59.500 45.455 9.86 0.00 0.00 4.35
3361 8555 3.670523 CGTGATCTGTACTGTCAAGTGTG 59.329 47.826 0.00 0.00 37.19 3.82
3433 8629 6.765989 GGAATACATGGTTCTACACAGCAATA 59.234 38.462 11.39 0.00 0.00 1.90
3435 8631 8.574251 AATACATGGTTCTACACAGCAATAAA 57.426 30.769 0.00 0.00 0.00 1.40
3451 8647 8.177663 ACAGCAATAAATTTGTCTTCTGTATCG 58.822 33.333 0.00 0.00 31.40 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.617947 ATTCCCACACCGAGCTCCTC 61.618 60.000 8.47 0.00 0.00 3.71
9 10 1.613630 ATTCCCACACCGAGCTCCT 60.614 57.895 8.47 0.00 0.00 3.69
10 11 1.450312 CATTCCCACACCGAGCTCC 60.450 63.158 8.47 0.00 0.00 4.70
11 12 1.450312 CCATTCCCACACCGAGCTC 60.450 63.158 2.73 2.73 0.00 4.09
12 13 2.224159 ACCATTCCCACACCGAGCT 61.224 57.895 0.00 0.00 0.00 4.09
13 14 2.040544 CACCATTCCCACACCGAGC 61.041 63.158 0.00 0.00 0.00 5.03
14 15 1.377202 CCACCATTCCCACACCGAG 60.377 63.158 0.00 0.00 0.00 4.63
15 16 1.419720 TTCCACCATTCCCACACCGA 61.420 55.000 0.00 0.00 0.00 4.69
16 17 0.323360 ATTCCACCATTCCCACACCG 60.323 55.000 0.00 0.00 0.00 4.94
17 18 1.185315 CATTCCACCATTCCCACACC 58.815 55.000 0.00 0.00 0.00 4.16
18 19 1.185315 CCATTCCACCATTCCCACAC 58.815 55.000 0.00 0.00 0.00 3.82
19 20 1.079796 TCCATTCCACCATTCCCACA 58.920 50.000 0.00 0.00 0.00 4.17
20 21 2.230130 TTCCATTCCACCATTCCCAC 57.770 50.000 0.00 0.00 0.00 4.61
21 22 2.534990 GTTTCCATTCCACCATTCCCA 58.465 47.619 0.00 0.00 0.00 4.37
22 23 1.476488 CGTTTCCATTCCACCATTCCC 59.524 52.381 0.00 0.00 0.00 3.97
23 24 2.167662 ACGTTTCCATTCCACCATTCC 58.832 47.619 0.00 0.00 0.00 3.01
24 25 6.710744 AGATATACGTTTCCATTCCACCATTC 59.289 38.462 0.00 0.00 0.00 2.67
25 26 6.601332 AGATATACGTTTCCATTCCACCATT 58.399 36.000 0.00 0.00 0.00 3.16
26 27 6.187727 AGATATACGTTTCCATTCCACCAT 57.812 37.500 0.00 0.00 0.00 3.55
27 28 5.623956 AGATATACGTTTCCATTCCACCA 57.376 39.130 0.00 0.00 0.00 4.17
28 29 5.176958 CGAAGATATACGTTTCCATTCCACC 59.823 44.000 0.00 0.00 0.00 4.61
29 30 5.751990 ACGAAGATATACGTTTCCATTCCAC 59.248 40.000 0.00 0.00 39.75 4.02
30 31 5.909477 ACGAAGATATACGTTTCCATTCCA 58.091 37.500 0.00 0.00 39.75 3.53
40 41 5.278858 GGGGATTCAGAACGAAGATATACGT 60.279 44.000 0.00 0.00 44.57 3.57
41 42 5.162075 GGGGATTCAGAACGAAGATATACG 58.838 45.833 0.00 0.00 36.95 3.06
42 43 5.011738 TGGGGGATTCAGAACGAAGATATAC 59.988 44.000 0.00 0.00 36.95 1.47
43 44 5.152193 TGGGGGATTCAGAACGAAGATATA 58.848 41.667 0.00 0.00 36.95 0.86
44 45 3.973973 TGGGGGATTCAGAACGAAGATAT 59.026 43.478 0.00 0.00 36.95 1.63
45 46 3.380393 TGGGGGATTCAGAACGAAGATA 58.620 45.455 0.00 0.00 36.95 1.98
46 47 2.196595 TGGGGGATTCAGAACGAAGAT 58.803 47.619 0.00 0.00 36.95 2.40
47 48 1.651737 TGGGGGATTCAGAACGAAGA 58.348 50.000 0.00 0.00 36.95 2.87
48 49 2.027192 TCTTGGGGGATTCAGAACGAAG 60.027 50.000 0.00 0.00 36.95 3.79
49 50 1.982226 TCTTGGGGGATTCAGAACGAA 59.018 47.619 0.00 0.00 38.22 3.85
50 51 1.278127 GTCTTGGGGGATTCAGAACGA 59.722 52.381 0.00 0.00 0.00 3.85
51 52 1.739067 GTCTTGGGGGATTCAGAACG 58.261 55.000 0.00 0.00 0.00 3.95
52 53 1.739067 CGTCTTGGGGGATTCAGAAC 58.261 55.000 0.00 0.00 0.00 3.01
53 54 0.035439 GCGTCTTGGGGGATTCAGAA 60.035 55.000 0.00 0.00 0.00 3.02
54 55 0.909610 AGCGTCTTGGGGGATTCAGA 60.910 55.000 0.00 0.00 0.00 3.27
55 56 0.462759 GAGCGTCTTGGGGGATTCAG 60.463 60.000 0.00 0.00 0.00 3.02
56 57 1.602237 GAGCGTCTTGGGGGATTCA 59.398 57.895 0.00 0.00 0.00 2.57
57 58 1.521681 CGAGCGTCTTGGGGGATTC 60.522 63.158 0.00 0.00 0.00 2.52
58 59 2.584608 CGAGCGTCTTGGGGGATT 59.415 61.111 0.00 0.00 0.00 3.01
59 60 4.162690 GCGAGCGTCTTGGGGGAT 62.163 66.667 0.00 0.00 0.00 3.85
62 63 4.821589 GAGGCGAGCGTCTTGGGG 62.822 72.222 10.14 0.00 0.00 4.96
63 64 4.069232 TGAGGCGAGCGTCTTGGG 62.069 66.667 16.98 0.00 0.00 4.12
64 65 1.934220 TAGTGAGGCGAGCGTCTTGG 61.934 60.000 16.98 0.00 0.00 3.61
65 66 0.109272 TTAGTGAGGCGAGCGTCTTG 60.109 55.000 16.98 0.00 0.00 3.02
66 67 0.818296 ATTAGTGAGGCGAGCGTCTT 59.182 50.000 16.98 9.16 0.00 3.01
67 68 0.101399 CATTAGTGAGGCGAGCGTCT 59.899 55.000 16.98 5.71 0.00 4.18
68 69 0.100682 TCATTAGTGAGGCGAGCGTC 59.899 55.000 10.45 10.45 0.00 5.19
69 70 0.747255 ATCATTAGTGAGGCGAGCGT 59.253 50.000 0.00 0.00 37.87 5.07
70 71 1.135046 CATCATTAGTGAGGCGAGCG 58.865 55.000 0.00 0.00 37.87 5.03
76 77 6.164876 CAGGAGATTAGCATCATTAGTGAGG 58.835 44.000 0.00 0.00 37.87 3.86
77 78 6.164876 CCAGGAGATTAGCATCATTAGTGAG 58.835 44.000 0.00 0.00 37.87 3.51
78 79 5.012458 CCCAGGAGATTAGCATCATTAGTGA 59.988 44.000 0.00 0.00 39.04 3.41
79 80 5.012458 TCCCAGGAGATTAGCATCATTAGTG 59.988 44.000 0.00 0.00 0.00 2.74
80 81 5.158141 TCCCAGGAGATTAGCATCATTAGT 58.842 41.667 0.00 0.00 0.00 2.24
81 82 5.752036 TCCCAGGAGATTAGCATCATTAG 57.248 43.478 0.00 0.00 0.00 1.73
82 83 6.514012 TTTCCCAGGAGATTAGCATCATTA 57.486 37.500 0.00 0.00 0.00 1.90
83 84 5.393068 TTTCCCAGGAGATTAGCATCATT 57.607 39.130 0.00 0.00 0.00 2.57
84 85 5.595814 ATTTCCCAGGAGATTAGCATCAT 57.404 39.130 0.00 0.00 0.00 2.45
85 86 5.393068 AATTTCCCAGGAGATTAGCATCA 57.607 39.130 0.74 0.00 28.90 3.07
86 87 5.829924 TCAAATTTCCCAGGAGATTAGCATC 59.170 40.000 3.09 0.00 30.26 3.91
87 88 5.769835 TCAAATTTCCCAGGAGATTAGCAT 58.230 37.500 3.09 0.00 30.26 3.79
88 89 5.191727 TCAAATTTCCCAGGAGATTAGCA 57.808 39.130 3.09 0.00 30.26 3.49
89 90 6.462067 CCATTCAAATTTCCCAGGAGATTAGC 60.462 42.308 3.09 0.00 30.26 3.09
90 91 6.835488 TCCATTCAAATTTCCCAGGAGATTAG 59.165 38.462 3.09 0.00 30.26 1.73
91 92 6.740693 TCCATTCAAATTTCCCAGGAGATTA 58.259 36.000 3.09 0.00 30.26 1.75
92 93 5.592795 TCCATTCAAATTTCCCAGGAGATT 58.407 37.500 0.00 0.00 31.46 2.40
93 94 5.206587 CTCCATTCAAATTTCCCAGGAGAT 58.793 41.667 15.96 0.00 43.07 2.75
94 95 4.603131 CTCCATTCAAATTTCCCAGGAGA 58.397 43.478 15.96 0.00 43.07 3.71
95 96 3.131755 GCTCCATTCAAATTTCCCAGGAG 59.868 47.826 16.39 16.39 43.22 3.69
96 97 3.099141 GCTCCATTCAAATTTCCCAGGA 58.901 45.455 0.00 0.00 0.00 3.86
97 98 2.159198 CGCTCCATTCAAATTTCCCAGG 60.159 50.000 0.00 0.00 0.00 4.45
98 99 2.736400 GCGCTCCATTCAAATTTCCCAG 60.736 50.000 0.00 0.00 0.00 4.45
99 100 1.204467 GCGCTCCATTCAAATTTCCCA 59.796 47.619 0.00 0.00 0.00 4.37
100 101 1.204467 TGCGCTCCATTCAAATTTCCC 59.796 47.619 9.73 0.00 0.00 3.97
101 102 2.652941 TGCGCTCCATTCAAATTTCC 57.347 45.000 9.73 0.00 0.00 3.13
102 103 3.242188 GCATTGCGCTCCATTCAAATTTC 60.242 43.478 9.73 0.00 37.77 2.17
103 104 2.674357 GCATTGCGCTCCATTCAAATTT 59.326 40.909 9.73 0.00 37.77 1.82
104 105 2.273557 GCATTGCGCTCCATTCAAATT 58.726 42.857 9.73 0.00 37.77 1.82
105 106 1.930567 GCATTGCGCTCCATTCAAAT 58.069 45.000 9.73 0.00 37.77 2.32
106 107 3.422122 GCATTGCGCTCCATTCAAA 57.578 47.368 9.73 0.00 37.77 2.69
116 117 1.529826 CGGAAAACTCTAGCATTGCGC 60.530 52.381 0.00 0.00 42.91 6.09
117 118 1.529826 GCGGAAAACTCTAGCATTGCG 60.530 52.381 2.38 5.34 39.22 4.85
118 119 1.468520 TGCGGAAAACTCTAGCATTGC 59.531 47.619 0.00 0.00 32.43 3.56
119 120 3.058293 TGTTGCGGAAAACTCTAGCATTG 60.058 43.478 0.00 0.00 37.68 2.82
120 121 3.058224 GTGTTGCGGAAAACTCTAGCATT 60.058 43.478 2.21 0.00 37.68 3.56
121 122 2.484264 GTGTTGCGGAAAACTCTAGCAT 59.516 45.455 2.21 0.00 37.68 3.79
122 123 1.871039 GTGTTGCGGAAAACTCTAGCA 59.129 47.619 2.21 0.00 35.90 3.49
123 124 1.197036 GGTGTTGCGGAAAACTCTAGC 59.803 52.381 10.02 0.00 0.00 3.42
124 125 1.459592 CGGTGTTGCGGAAAACTCTAG 59.540 52.381 10.02 0.00 0.00 2.43
125 126 1.504359 CGGTGTTGCGGAAAACTCTA 58.496 50.000 10.02 0.00 0.00 2.43
126 127 1.782028 GCGGTGTTGCGGAAAACTCT 61.782 55.000 10.02 0.00 0.00 3.24
127 128 1.370051 GCGGTGTTGCGGAAAACTC 60.370 57.895 10.02 0.00 0.00 3.01
128 129 2.719354 GCGGTGTTGCGGAAAACT 59.281 55.556 10.02 0.00 0.00 2.66
129 130 2.354188 GGCGGTGTTGCGGAAAAC 60.354 61.111 0.50 0.50 35.06 2.43
130 131 3.955101 CGGCGGTGTTGCGGAAAA 61.955 61.111 0.00 0.00 37.37 2.29
137 138 3.419759 GTAGGTGCGGCGGTGTTG 61.420 66.667 9.78 0.00 0.00 3.33
145 146 4.824166 CGACCGTCGTAGGTGCGG 62.824 72.222 12.91 15.55 46.09 5.69
155 156 7.912250 TCTTTTATCTTACTAATGACGACCGTC 59.088 37.037 14.88 14.88 44.77 4.79
156 157 7.765307 TCTTTTATCTTACTAATGACGACCGT 58.235 34.615 0.00 0.00 0.00 4.83
157 158 7.378995 CCTCTTTTATCTTACTAATGACGACCG 59.621 40.741 0.00 0.00 0.00 4.79
158 159 8.411683 TCCTCTTTTATCTTACTAATGACGACC 58.588 37.037 0.00 0.00 0.00 4.79
159 160 9.453325 CTCCTCTTTTATCTTACTAATGACGAC 57.547 37.037 0.00 0.00 0.00 4.34
160 161 9.186837 ACTCCTCTTTTATCTTACTAATGACGA 57.813 33.333 0.00 0.00 0.00 4.20
161 162 9.804758 AACTCCTCTTTTATCTTACTAATGACG 57.195 33.333 0.00 0.00 0.00 4.35
166 167 9.216117 GCAACAACTCCTCTTTTATCTTACTAA 57.784 33.333 0.00 0.00 0.00 2.24
167 168 8.594550 AGCAACAACTCCTCTTTTATCTTACTA 58.405 33.333 0.00 0.00 0.00 1.82
168 169 7.454225 AGCAACAACTCCTCTTTTATCTTACT 58.546 34.615 0.00 0.00 0.00 2.24
169 170 7.674471 AGCAACAACTCCTCTTTTATCTTAC 57.326 36.000 0.00 0.00 0.00 2.34
170 171 8.567948 CAAAGCAACAACTCCTCTTTTATCTTA 58.432 33.333 0.00 0.00 0.00 2.10
171 172 7.428826 CAAAGCAACAACTCCTCTTTTATCTT 58.571 34.615 0.00 0.00 0.00 2.40
172 173 6.015940 CCAAAGCAACAACTCCTCTTTTATCT 60.016 38.462 0.00 0.00 0.00 1.98
173 174 6.152379 CCAAAGCAACAACTCCTCTTTTATC 58.848 40.000 0.00 0.00 0.00 1.75
174 175 5.011023 CCCAAAGCAACAACTCCTCTTTTAT 59.989 40.000 0.00 0.00 0.00 1.40
175 176 4.340950 CCCAAAGCAACAACTCCTCTTTTA 59.659 41.667 0.00 0.00 0.00 1.52
176 177 3.132824 CCCAAAGCAACAACTCCTCTTTT 59.867 43.478 0.00 0.00 0.00 2.27
177 178 2.695147 CCCAAAGCAACAACTCCTCTTT 59.305 45.455 0.00 0.00 0.00 2.52
178 179 2.310538 CCCAAAGCAACAACTCCTCTT 58.689 47.619 0.00 0.00 0.00 2.85
179 180 1.986882 CCCAAAGCAACAACTCCTCT 58.013 50.000 0.00 0.00 0.00 3.69
180 181 0.315251 GCCCAAAGCAACAACTCCTC 59.685 55.000 0.00 0.00 42.97 3.71
181 182 1.455383 CGCCCAAAGCAACAACTCCT 61.455 55.000 0.00 0.00 44.04 3.69
182 183 1.007387 CGCCCAAAGCAACAACTCC 60.007 57.895 0.00 0.00 44.04 3.85
183 184 0.102300 AACGCCCAAAGCAACAACTC 59.898 50.000 0.00 0.00 44.04 3.01
184 185 0.179113 CAACGCCCAAAGCAACAACT 60.179 50.000 0.00 0.00 44.04 3.16
185 186 1.151172 CCAACGCCCAAAGCAACAAC 61.151 55.000 0.00 0.00 44.04 3.32
186 187 1.142748 CCAACGCCCAAAGCAACAA 59.857 52.632 0.00 0.00 44.04 2.83
187 188 2.811101 CCAACGCCCAAAGCAACA 59.189 55.556 0.00 0.00 44.04 3.33
188 189 2.661537 GCCAACGCCCAAAGCAAC 60.662 61.111 0.00 0.00 44.04 4.17
189 190 4.277593 CGCCAACGCCCAAAGCAA 62.278 61.111 0.00 0.00 44.04 3.91
205 206 3.688475 CTCAAATGCTTGGCGCCCG 62.688 63.158 26.77 16.62 38.05 6.13
206 207 2.182537 CTCAAATGCTTGGCGCCC 59.817 61.111 26.77 9.46 38.05 6.13
207 208 1.444895 CACTCAAATGCTTGGCGCC 60.445 57.895 22.73 22.73 38.05 6.53
208 209 0.318955 AACACTCAAATGCTTGGCGC 60.319 50.000 0.00 0.00 39.77 6.53
209 210 1.269206 ACAACACTCAAATGCTTGGCG 60.269 47.619 0.00 0.00 33.01 5.69
210 211 2.514205 ACAACACTCAAATGCTTGGC 57.486 45.000 0.00 0.00 33.01 4.52
211 212 4.386652 GCATTACAACACTCAAATGCTTGG 59.613 41.667 10.71 0.00 46.71 3.61
212 213 5.505165 GCATTACAACACTCAAATGCTTG 57.495 39.130 10.71 0.00 46.71 4.01
216 217 2.916716 GCGGCATTACAACACTCAAATG 59.083 45.455 0.00 0.00 33.45 2.32
217 218 2.414029 CGCGGCATTACAACACTCAAAT 60.414 45.455 0.00 0.00 0.00 2.32
218 219 1.069568 CGCGGCATTACAACACTCAAA 60.070 47.619 0.00 0.00 0.00 2.69
219 220 0.515127 CGCGGCATTACAACACTCAA 59.485 50.000 0.00 0.00 0.00 3.02
220 221 0.319986 TCGCGGCATTACAACACTCA 60.320 50.000 6.13 0.00 0.00 3.41
221 222 0.370273 CTCGCGGCATTACAACACTC 59.630 55.000 6.13 0.00 0.00 3.51
222 223 0.037697 TCTCGCGGCATTACAACACT 60.038 50.000 6.13 0.00 0.00 3.55
223 224 0.370273 CTCTCGCGGCATTACAACAC 59.630 55.000 6.13 0.00 0.00 3.32
224 225 0.037697 ACTCTCGCGGCATTACAACA 60.038 50.000 6.13 0.00 0.00 3.33
225 226 1.852895 CTACTCTCGCGGCATTACAAC 59.147 52.381 6.13 0.00 0.00 3.32
226 227 1.746787 TCTACTCTCGCGGCATTACAA 59.253 47.619 6.13 0.00 0.00 2.41
227 228 1.385528 TCTACTCTCGCGGCATTACA 58.614 50.000 6.13 0.00 0.00 2.41
228 229 2.708386 ATCTACTCTCGCGGCATTAC 57.292 50.000 6.13 0.00 0.00 1.89
229 230 3.728076 AAATCTACTCTCGCGGCATTA 57.272 42.857 6.13 0.00 0.00 1.90
230 231 2.604046 AAATCTACTCTCGCGGCATT 57.396 45.000 6.13 0.00 0.00 3.56
231 232 2.604046 AAAATCTACTCTCGCGGCAT 57.396 45.000 6.13 0.00 0.00 4.40
232 233 3.728076 ATAAAATCTACTCTCGCGGCA 57.272 42.857 6.13 0.00 0.00 5.69
233 234 4.745620 AGAAATAAAATCTACTCTCGCGGC 59.254 41.667 6.13 0.00 0.00 6.53
234 235 6.641062 CAAGAAATAAAATCTACTCTCGCGG 58.359 40.000 6.13 0.00 0.00 6.46
235 236 6.123441 GCAAGAAATAAAATCTACTCTCGCG 58.877 40.000 0.00 0.00 0.00 5.87
236 237 6.037172 TGGCAAGAAATAAAATCTACTCTCGC 59.963 38.462 0.00 0.00 0.00 5.03
237 238 7.278868 AGTGGCAAGAAATAAAATCTACTCTCG 59.721 37.037 0.00 0.00 0.00 4.04
238 239 8.499403 AGTGGCAAGAAATAAAATCTACTCTC 57.501 34.615 0.00 0.00 0.00 3.20
239 240 8.870075 AAGTGGCAAGAAATAAAATCTACTCT 57.130 30.769 0.00 0.00 0.00 3.24
240 241 7.905493 CGAAGTGGCAAGAAATAAAATCTACTC 59.095 37.037 0.00 0.00 0.00 2.59
241 242 7.390718 ACGAAGTGGCAAGAAATAAAATCTACT 59.609 33.333 0.00 0.00 42.51 2.57
242 243 7.527457 ACGAAGTGGCAAGAAATAAAATCTAC 58.473 34.615 0.00 0.00 42.51 2.59
243 244 7.681939 ACGAAGTGGCAAGAAATAAAATCTA 57.318 32.000 0.00 0.00 42.51 1.98
244 245 6.575162 ACGAAGTGGCAAGAAATAAAATCT 57.425 33.333 0.00 0.00 42.51 2.40
262 263 3.252974 AGATTTAGACAGGCCACGAAG 57.747 47.619 5.01 0.00 0.00 3.79
263 264 3.695830 AAGATTTAGACAGGCCACGAA 57.304 42.857 5.01 0.00 0.00 3.85
264 265 3.695830 AAAGATTTAGACAGGCCACGA 57.304 42.857 5.01 0.00 0.00 4.35
265 266 4.455877 AGAAAAAGATTTAGACAGGCCACG 59.544 41.667 5.01 0.00 0.00 4.94
266 267 5.966742 AGAAAAAGATTTAGACAGGCCAC 57.033 39.130 5.01 0.00 0.00 5.01
267 268 8.650143 ATTAAGAAAAAGATTTAGACAGGCCA 57.350 30.769 5.01 0.00 0.00 5.36
268 269 8.739972 TGATTAAGAAAAAGATTTAGACAGGCC 58.260 33.333 0.00 0.00 0.00 5.19
279 280 9.947433 TGCCATTTCATTGATTAAGAAAAAGAT 57.053 25.926 0.00 0.00 35.20 2.40
280 281 9.775854 TTGCCATTTCATTGATTAAGAAAAAGA 57.224 25.926 0.00 0.00 35.20 2.52
284 285 9.947433 AGATTTGCCATTTCATTGATTAAGAAA 57.053 25.926 0.00 0.00 35.92 2.52
285 286 9.947433 AAGATTTGCCATTTCATTGATTAAGAA 57.053 25.926 0.00 0.00 0.00 2.52
286 287 9.947433 AAAGATTTGCCATTTCATTGATTAAGA 57.053 25.926 0.00 0.00 0.00 2.10
289 290 8.452534 GCAAAAGATTTGCCATTTCATTGATTA 58.547 29.630 15.12 0.00 39.38 1.75
290 291 7.309920 GCAAAAGATTTGCCATTTCATTGATT 58.690 30.769 15.12 0.00 39.38 2.57
291 292 6.848451 GCAAAAGATTTGCCATTTCATTGAT 58.152 32.000 15.12 0.00 39.38 2.57
292 293 6.243811 GCAAAAGATTTGCCATTTCATTGA 57.756 33.333 15.12 0.00 39.38 2.57
303 304 5.482686 TTGAAACAAGGCAAAAGATTTGC 57.517 34.783 17.18 17.18 44.22 3.68
326 327 3.191371 CCTGCTATTTCGGCTCTGTTTTT 59.809 43.478 0.00 0.00 0.00 1.94
327 328 2.749621 CCTGCTATTTCGGCTCTGTTTT 59.250 45.455 0.00 0.00 0.00 2.43
328 329 2.027192 TCCTGCTATTTCGGCTCTGTTT 60.027 45.455 0.00 0.00 0.00 2.83
329 330 1.555075 TCCTGCTATTTCGGCTCTGTT 59.445 47.619 0.00 0.00 0.00 3.16
330 331 1.134670 GTCCTGCTATTTCGGCTCTGT 60.135 52.381 0.00 0.00 0.00 3.41
331 332 1.576356 GTCCTGCTATTTCGGCTCTG 58.424 55.000 0.00 0.00 0.00 3.35
332 333 0.466124 GGTCCTGCTATTTCGGCTCT 59.534 55.000 0.00 0.00 0.00 4.09
346 347 1.080354 TGGGAGGAACGATGGTCCT 59.920 57.895 2.34 2.34 36.43 3.85
356 357 3.781307 CGCCATCGGTGGGAGGAA 61.781 66.667 18.38 0.00 46.14 3.36
373 374 1.598701 GACATGGCTGCCAAGTTCCC 61.599 60.000 27.90 13.68 35.48 3.97
562 569 2.023015 TGGCAGAGATAAGGGAGGAGAA 60.023 50.000 0.00 0.00 0.00 2.87
573 580 4.033009 TCAAGAGGTTGATGGCAGAGATA 58.967 43.478 0.00 0.00 37.79 1.98
594 601 2.811317 GCGATCGATCCGGCCATC 60.811 66.667 21.57 0.00 0.00 3.51
617 624 0.572125 GCGGTTACGGTTACATACGC 59.428 55.000 0.00 2.15 41.36 4.42
622 629 1.212490 CCTCGCGGTTACGGTTACA 59.788 57.895 6.13 0.00 41.36 2.41
627 634 0.171007 TTAGTTCCTCGCGGTTACGG 59.829 55.000 6.13 0.00 41.36 4.02
653 660 0.540365 AACGTACCCGGTGAGAAGGA 60.540 55.000 0.00 0.00 38.78 3.36
684 691 7.392673 AGCTATATAAGAGTTCGGTTATCGGAA 59.607 37.037 0.00 0.00 39.77 4.30
710 717 3.943691 GGTGTGGGCGTGTGGGTA 61.944 66.667 0.00 0.00 0.00 3.69
782 3883 4.459089 GCTGGCGGAGGAGTGGAC 62.459 72.222 0.00 0.00 0.00 4.02
797 3898 2.335092 CTTGGATGGCCGGATCTGCT 62.335 60.000 5.05 0.00 36.79 4.24
850 3957 4.796231 CGGGACTCGGGCGTGAAG 62.796 72.222 0.00 0.00 34.75 3.02
895 4003 1.404843 GTGGGCTTCGATCTCCTAGT 58.595 55.000 0.00 0.00 0.00 2.57
920 4037 3.799755 GGTGTCAATGGCGTCGGC 61.800 66.667 12.58 12.58 38.90 5.54
935 4052 4.008933 GCTGCTGGTGACTCGGGT 62.009 66.667 0.00 0.00 0.00 5.28
942 4059 3.002583 TCGGGATGCTGCTGGTGA 61.003 61.111 0.00 0.00 0.00 4.02
944 4061 4.457496 CGTCGGGATGCTGCTGGT 62.457 66.667 0.00 0.00 0.00 4.00
983 4108 1.024046 CATTTGGCCCACACGATCGA 61.024 55.000 24.34 0.00 0.00 3.59
1014 4139 2.574222 CGGCGCGTTATCGAGGTTC 61.574 63.158 8.43 0.00 39.71 3.62
1074 4199 3.126073 GACGCTCATGATTATGCTGACA 58.874 45.455 0.00 0.00 34.21 3.58
1102 4227 3.490078 GGATCGATGACCAGACACTTCTC 60.490 52.174 0.54 0.00 0.00 2.87
1104 4229 2.796383 CGGATCGATGACCAGACACTTC 60.796 54.545 0.54 0.00 0.00 3.01
1194 4319 0.178987 GAGGGTCAGCGGAGAGGATA 60.179 60.000 0.00 0.00 0.00 2.59
1206 4331 0.178950 ACTCAGTCTGCAGAGGGTCA 60.179 55.000 18.89 0.00 36.20 4.02
1221 4346 2.776526 ACCACCTTGGGGCACTCA 60.777 61.111 0.00 0.00 43.37 3.41
1237 4362 2.222445 GGACCGAACAATGTACACACAC 59.778 50.000 0.00 0.00 37.54 3.82
1238 4363 2.485903 GGACCGAACAATGTACACACA 58.514 47.619 0.00 0.00 39.52 3.72
1239 4364 1.802365 GGGACCGAACAATGTACACAC 59.198 52.381 0.00 0.00 0.00 3.82
1240 4365 1.416772 TGGGACCGAACAATGTACACA 59.583 47.619 0.00 0.00 0.00 3.72
1247 4372 0.036010 CTGAGCTGGGACCGAACAAT 60.036 55.000 0.00 0.00 0.00 2.71
1268 4393 4.735985 TGATTTGCCACGAATTTCATCAG 58.264 39.130 0.00 0.00 0.00 2.90
1432 4557 1.635487 TCCTCATCCAAAGGAACCAGG 59.365 52.381 0.00 0.00 39.99 4.45
1528 4653 3.730761 GCAACGTGCCAGGCAGAG 61.731 66.667 16.83 15.02 40.08 3.35
1765 4890 6.656632 ATTTCCAGCATCTCGTCTAATAGA 57.343 37.500 0.00 0.00 0.00 1.98
1768 4893 5.674525 TGAATTTCCAGCATCTCGTCTAAT 58.325 37.500 0.00 0.00 0.00 1.73
1801 4926 4.368808 CCGGCGTCAACTTGCACG 62.369 66.667 6.01 8.51 39.09 5.34
1965 5091 3.124636 GCGTATTCGTGGATTTCACTTGT 59.875 43.478 0.00 0.00 43.94 3.16
2031 5157 0.033642 GCCTGGTTATCTCCGGTAGC 59.966 60.000 0.00 0.00 32.33 3.58
2096 5222 1.134367 TCTCTACTCGGGCATGAAACG 59.866 52.381 0.00 0.00 0.00 3.60
2124 5250 1.436983 CCCGCGCCTCCAGTATTTTC 61.437 60.000 0.00 0.00 0.00 2.29
2127 5253 2.762459 TCCCGCGCCTCCAGTATT 60.762 61.111 0.00 0.00 0.00 1.89
2140 5266 5.699458 ACTTGTAACAAGTTTCATAGTCCCG 59.301 40.000 0.00 0.00 0.00 5.14
2141 5267 7.658575 TGTACTTGTAACAAGTTTCATAGTCCC 59.341 37.037 0.00 5.25 0.00 4.46
2154 5280 7.676004 TGATCTCCTCAATGTACTTGTAACAA 58.324 34.615 0.00 0.00 36.20 2.83
2202 5328 0.037605 CCAGAAGGCGAAGTACGGTT 60.038 55.000 0.00 0.00 42.83 4.44
2205 5331 0.038526 ACACCAGAAGGCGAAGTACG 60.039 55.000 0.00 0.00 45.66 3.67
2208 5334 0.180406 ACAACACCAGAAGGCGAAGT 59.820 50.000 0.00 0.00 39.06 3.01
2226 5352 3.864540 GCCCAGCATTTGTAAGGGAAAAC 60.865 47.826 0.00 0.00 42.25 2.43
2248 5374 2.065993 TCGAAACTCTTCTTCGGCAG 57.934 50.000 5.26 0.00 44.50 4.85
2255 5381 4.158209 GCCTAAGGTAGTCGAAACTCTTCT 59.842 45.833 0.00 0.00 36.92 2.85
2274 5400 0.396556 TGTGCAGTATCTCCCGCCTA 60.397 55.000 0.00 0.00 0.00 3.93
2307 5433 5.357878 CAGATTGTATAACAAGGGCATGTGT 59.642 40.000 0.00 0.00 41.94 3.72
2466 5592 2.595238 ACAAGACGGACACTAAGAGGT 58.405 47.619 0.00 0.00 0.00 3.85
2476 5602 0.798776 CCATGCTGAACAAGACGGAC 59.201 55.000 0.00 0.00 0.00 4.79
2478 5604 1.308069 CCCCATGCTGAACAAGACGG 61.308 60.000 0.00 0.00 0.00 4.79
2481 5607 0.770499 TCACCCCATGCTGAACAAGA 59.230 50.000 0.00 0.00 0.00 3.02
2495 5621 1.450312 CGCCATCCAGACTTCACCC 60.450 63.158 0.00 0.00 0.00 4.61
2496 5622 0.179000 ATCGCCATCCAGACTTCACC 59.821 55.000 0.00 0.00 0.00 4.02
2544 5670 0.252881 TCAAGTCCAGATGAGGGCCT 60.253 55.000 5.25 5.25 32.23 5.19
2564 5690 6.279882 CCACTAATGGTTGAGAGATCTCTTC 58.720 44.000 25.81 18.15 41.23 2.87
2599 5725 2.762459 TGCCCCGGCTGGTAGTAG 60.762 66.667 11.58 0.00 42.51 2.57
2656 5956 1.338200 GCCACCAACAAACACAACCAA 60.338 47.619 0.00 0.00 0.00 3.67
2878 6517 2.074922 AAGGAAAATCCCCTCCTGGA 57.925 50.000 0.00 0.00 41.40 3.86
2898 6537 2.683211 AAAGTGGCCCTCAACTGAAT 57.317 45.000 0.00 0.00 0.00 2.57
2906 6545 2.166459 GGCAGAATAAAAAGTGGCCCTC 59.834 50.000 0.00 0.00 33.93 4.30
2993 6634 1.062587 GAGATATTGGTGTGCACGTGC 59.937 52.381 33.11 33.11 42.50 5.34
2995 6636 1.555075 AGGAGATATTGGTGTGCACGT 59.445 47.619 13.13 0.00 0.00 4.49
3000 6641 5.105351 TGTCTGTACAGGAGATATTGGTGTG 60.105 44.000 22.48 0.00 0.00 3.82
3004 6645 4.499865 CCGTGTCTGTACAGGAGATATTGG 60.500 50.000 22.48 10.01 42.77 3.16
3006 6647 4.533815 TCCGTGTCTGTACAGGAGATATT 58.466 43.478 22.48 0.00 42.77 1.28
3026 6667 3.795623 ATTGATGTTTGCAGAGCATCC 57.204 42.857 18.21 7.01 43.17 3.51
3034 6675 6.405065 GCAGATCCTCTAAATTGATGTTTGCA 60.405 38.462 0.00 0.00 0.00 4.08
3049 6690 6.671340 TGCCTATAGATAATTGCAGATCCTCT 59.329 38.462 0.00 0.00 0.00 3.69
3050 6691 6.882656 TGCCTATAGATAATTGCAGATCCTC 58.117 40.000 0.00 0.00 0.00 3.71
3070 6711 3.132925 GCAACACATTTTTGTCATGCCT 58.867 40.909 0.00 0.00 0.00 4.75
3072 6713 4.533225 TTGCAACACATTTTTGTCATGC 57.467 36.364 0.00 5.96 33.55 4.06
3119 6760 1.121378 TGTTGAACGGTGGGACTGTA 58.879 50.000 0.00 0.00 36.53 2.74
3142 6784 9.567848 AATGGCTTCGTGTAACTTTTATAATTG 57.432 29.630 0.00 0.00 31.75 2.32
3146 6788 9.656040 TCTAAATGGCTTCGTGTAACTTTTATA 57.344 29.630 0.00 0.00 31.75 0.98
3158 6800 2.359900 CTGGCTTCTAAATGGCTTCGT 58.640 47.619 0.00 0.00 0.00 3.85
3161 6803 2.220653 TGCTGGCTTCTAAATGGCTT 57.779 45.000 0.00 0.00 0.00 4.35
3171 6813 4.421948 CAAAAGAATCTGATGCTGGCTTC 58.578 43.478 0.00 2.15 0.00 3.86
3195 6837 2.408271 TAGCATGCTCCTTGGAGTTG 57.592 50.000 26.57 15.06 0.00 3.16
3224 6866 1.111277 GGACTGTGGCTTGGTTTTGT 58.889 50.000 0.00 0.00 0.00 2.83
3226 6868 1.756538 CAAGGACTGTGGCTTGGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
3254 6896 3.019564 TGAAGAGTCATGAGATGCTCGA 58.980 45.455 0.00 0.00 37.99 4.04
3258 6900 2.170187 ACCCTGAAGAGTCATGAGATGC 59.830 50.000 0.00 0.00 31.85 3.91
3268 6910 5.053978 AGAATGTCAAAACCCTGAAGAGT 57.946 39.130 0.00 0.00 0.00 3.24
3294 6937 9.495754 GCAAATGAAAGATGTTTATACAGAGAC 57.504 33.333 0.00 0.00 37.77 3.36
3295 6938 9.453572 AGCAAATGAAAGATGTTTATACAGAGA 57.546 29.630 0.00 0.00 37.77 3.10
3300 6943 9.807649 ATGGAAGCAAATGAAAGATGTTTATAC 57.192 29.630 0.00 0.00 0.00 1.47
3302 6945 7.983484 GGATGGAAGCAAATGAAAGATGTTTAT 59.017 33.333 0.00 0.00 0.00 1.40
3306 6949 4.773674 TGGATGGAAGCAAATGAAAGATGT 59.226 37.500 0.00 0.00 0.00 3.06
3320 6963 3.310774 CACGACAAGCTTATGGATGGAAG 59.689 47.826 0.00 0.00 0.00 3.46
3324 6967 4.210746 CAGATCACGACAAGCTTATGGATG 59.789 45.833 0.00 0.00 0.00 3.51
3340 8534 4.445718 CACACACTTGACAGTACAGATCAC 59.554 45.833 0.00 0.00 0.00 3.06
3343 8537 3.070159 AGCACACACTTGACAGTACAGAT 59.930 43.478 0.00 0.00 0.00 2.90
3361 8555 4.566360 GCAAAGAACTGAGATCTCTAGCAC 59.434 45.833 22.95 14.38 0.00 4.40
3433 8629 7.921786 TGATTCCGATACAGAAGACAAATTT 57.078 32.000 0.00 0.00 0.00 1.82
3435 8631 6.422100 CGATGATTCCGATACAGAAGACAAAT 59.578 38.462 0.00 0.00 0.00 2.32
3451 8647 4.092091 GTGACTTGTGAAGACGATGATTCC 59.908 45.833 0.00 0.00 0.00 3.01
3622 8818 4.074970 GGCTTCTTGGTTCAGATTCTTCA 58.925 43.478 0.00 0.00 0.00 3.02
3748 8944 1.524008 GGTGGAAAACCTTCTGCCCG 61.524 60.000 0.00 0.00 46.55 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.