Multiple sequence alignment - TraesCS7B01G226800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G226800 chr7B 100.000 5916 0 0 1 5916 427291805 427297720 0.000000e+00 10925.0
1 TraesCS7B01G226800 chr7B 96.809 94 2 1 58 150 622831030 622831123 7.940000e-34 156.0
2 TraesCS7B01G226800 chr7B 93.137 102 5 1 53 152 8925167 8925268 1.330000e-31 148.0
3 TraesCS7B01G226800 chr7B 87.719 57 5 2 1 55 310416273 310416329 1.380000e-06 65.8
4 TraesCS7B01G226800 chr7D 89.168 2825 150 55 779 3542 412874907 412877636 0.000000e+00 3378.0
5 TraesCS7B01G226800 chr7D 94.328 1622 66 11 3557 5162 412877709 412879320 0.000000e+00 2462.0
6 TraesCS7B01G226800 chr7D 84.993 753 56 25 5194 5916 412879756 412880481 0.000000e+00 712.0
7 TraesCS7B01G226800 chr7D 93.662 284 17 1 496 779 282878386 282878104 1.970000e-114 424.0
8 TraesCS7B01G226800 chr7D 81.674 442 28 20 77 492 412874489 412874903 9.570000e-83 318.0
9 TraesCS7B01G226800 chr7A 88.909 2254 132 54 771 2957 474285416 474287618 0.000000e+00 2669.0
10 TraesCS7B01G226800 chr7A 95.037 1088 49 4 3557 4640 474288480 474289566 0.000000e+00 1705.0
11 TraesCS7B01G226800 chr7A 87.936 1318 75 35 4647 5910 474289624 474290911 0.000000e+00 1476.0
12 TraesCS7B01G226800 chr7A 91.071 560 41 6 2992 3542 474287848 474288407 0.000000e+00 749.0
13 TraesCS7B01G226800 chr7A 77.212 373 35 16 156 499 474285068 474285419 7.880000e-39 172.0
14 TraesCS7B01G226800 chr1A 97.902 286 4 2 496 781 507839022 507839305 1.480000e-135 494.0
15 TraesCS7B01G226800 chr1A 98.540 274 4 0 498 771 515274577 515274304 8.910000e-133 484.0
16 TraesCS7B01G226800 chrUn 98.195 277 4 1 498 773 63609020 63609296 3.210000e-132 483.0
17 TraesCS7B01G226800 chrUn 88.189 127 13 2 25 150 332204393 332204518 3.690000e-32 150.0
18 TraesCS7B01G226800 chrUn 88.189 127 13 2 25 150 332213849 332213724 3.690000e-32 150.0
19 TraesCS7B01G226800 chrUn 88.189 127 13 2 25 150 373754846 373754971 3.690000e-32 150.0
20 TraesCS7B01G226800 chrUn 91.379 58 3 1 1 56 323578016 323577959 1.770000e-10 78.7
21 TraesCS7B01G226800 chrUn 89.655 58 4 1 1 56 45828231 45828288 8.220000e-09 73.1
22 TraesCS7B01G226800 chr3B 98.175 274 5 0 498 771 9309780 9309507 4.150000e-131 479.0
23 TraesCS7B01G226800 chr3B 97.509 281 6 1 498 778 687633211 687632932 4.150000e-131 479.0
24 TraesCS7B01G226800 chr3B 97.810 274 6 0 498 771 576172326 576172053 1.930000e-129 473.0
25 TraesCS7B01G226800 chr6B 93.950 281 17 0 494 774 403396767 403396487 5.480000e-115 425.0
26 TraesCS7B01G226800 chr4B 93.907 279 16 1 496 774 650959344 650959067 2.550000e-113 420.0
27 TraesCS7B01G226800 chr2D 91.525 118 8 2 33 150 188886054 188886169 1.710000e-35 161.0
28 TraesCS7B01G226800 chr3A 95.745 94 4 0 58 151 697619227 697619320 1.030000e-32 152.0
29 TraesCS7B01G226800 chr4A 90.909 110 6 4 59 167 616405305 616405411 1.720000e-30 145.0
30 TraesCS7B01G226800 chr4A 97.778 45 1 0 18 62 730293221 730293177 1.770000e-10 78.7
31 TraesCS7B01G226800 chr6D 90.090 111 9 2 58 167 206553860 206553969 6.180000e-30 143.0
32 TraesCS7B01G226800 chr6D 89.474 57 4 2 1 55 85585092 85585036 2.960000e-08 71.3
33 TraesCS7B01G226800 chr3D 91.379 58 3 1 1 56 599436801 599436858 1.770000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G226800 chr7B 427291805 427297720 5915 False 10925.0 10925 100.00000 1 5916 1 chr7B.!!$F3 5915
1 TraesCS7B01G226800 chr7D 412874489 412880481 5992 False 1717.5 3378 87.54075 77 5916 4 chr7D.!!$F1 5839
2 TraesCS7B01G226800 chr7A 474285068 474290911 5843 False 1354.2 2669 88.03300 156 5910 5 chr7A.!!$F1 5754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 240 0.318784 GAAGAGTCGGTCGCTTGTGT 60.319 55.0 0.00 0.0 36.38 3.72 F
1054 1124 0.039035 CCTCCTCCTCCTCCTATCCG 59.961 65.0 0.00 0.0 0.00 4.18 F
1665 1782 0.108520 TACCGAATCTCACCGCAACC 60.109 55.0 0.00 0.0 0.00 3.77 F
2875 3046 0.179018 AAACCCTCAGACACTGGTGC 60.179 55.0 0.17 0.0 31.51 5.01 F
3132 3502 0.034756 TTATCATGCCCATCCCGTCG 59.965 55.0 0.00 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1324 0.388263 GTCTGGACGGAGGAACGAAC 60.388 60.0 0.00 0.0 37.61 3.95 R
2110 2237 0.826256 AAAGGGAAAAGGTCGGGCAC 60.826 55.0 0.00 0.0 0.00 5.01 R
2946 3118 0.981183 TGAGCACCGAACCACCTAAT 59.019 50.0 0.00 0.0 0.00 1.73 R
4150 4586 0.108186 ATCAACAGAGAATGGCGCGA 60.108 50.0 12.10 0.0 0.00 5.87 R
4916 5407 0.108424 CTAACTGAAGCAGAGCGCCT 60.108 55.0 2.29 0.0 44.04 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.434420 CTAGATACATTCATTCCTTCATTCCTC 57.566 37.037 0.00 0.00 0.00 3.71
27 28 7.230027 AGATACATTCATTCCTTCATTCCTCC 58.770 38.462 0.00 0.00 0.00 4.30
28 29 4.202441 ACATTCATTCCTTCATTCCTCCG 58.798 43.478 0.00 0.00 0.00 4.63
29 30 4.080356 ACATTCATTCCTTCATTCCTCCGA 60.080 41.667 0.00 0.00 0.00 4.55
30 31 3.543680 TCATTCCTTCATTCCTCCGAC 57.456 47.619 0.00 0.00 0.00 4.79
31 32 2.837591 TCATTCCTTCATTCCTCCGACA 59.162 45.455 0.00 0.00 0.00 4.35
32 33 3.263170 TCATTCCTTCATTCCTCCGACAA 59.737 43.478 0.00 0.00 0.00 3.18
33 34 3.334583 TTCCTTCATTCCTCCGACAAG 57.665 47.619 0.00 0.00 0.00 3.16
34 35 2.257207 TCCTTCATTCCTCCGACAAGT 58.743 47.619 0.00 0.00 0.00 3.16
35 36 3.437213 TCCTTCATTCCTCCGACAAGTA 58.563 45.455 0.00 0.00 0.00 2.24
36 37 4.030913 TCCTTCATTCCTCCGACAAGTAT 58.969 43.478 0.00 0.00 0.00 2.12
37 38 4.469945 TCCTTCATTCCTCCGACAAGTATT 59.530 41.667 0.00 0.00 0.00 1.89
38 39 5.045869 TCCTTCATTCCTCCGACAAGTATTT 60.046 40.000 0.00 0.00 0.00 1.40
39 40 5.294552 CCTTCATTCCTCCGACAAGTATTTC 59.705 44.000 0.00 0.00 0.00 2.17
40 41 4.766375 TCATTCCTCCGACAAGTATTTCC 58.234 43.478 0.00 0.00 0.00 3.13
41 42 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
42 43 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
43 44 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
44 45 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
45 46 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
46 47 1.135315 CCGACAAGTATTTCCGGACGA 60.135 52.381 1.83 0.00 42.49 4.20
47 48 2.598589 CGACAAGTATTTCCGGACGAA 58.401 47.619 1.83 0.00 0.00 3.85
48 49 2.597305 CGACAAGTATTTCCGGACGAAG 59.403 50.000 1.83 0.00 0.00 3.79
49 50 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
50 51 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
51 52 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
52 53 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
53 54 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
54 55 1.856629 ATTTCCGGACGAAGGGAGTA 58.143 50.000 1.83 0.00 33.01 2.59
55 56 1.180029 TTTCCGGACGAAGGGAGTAG 58.820 55.000 1.83 0.00 33.01 2.57
56 57 0.682209 TTCCGGACGAAGGGAGTAGG 60.682 60.000 1.83 0.00 33.01 3.18
57 58 1.077212 CCGGACGAAGGGAGTAGGA 60.077 63.158 0.00 0.00 0.00 2.94
58 59 0.682209 CCGGACGAAGGGAGTAGGAA 60.682 60.000 0.00 0.00 0.00 3.36
59 60 1.180029 CGGACGAAGGGAGTAGGAAA 58.820 55.000 0.00 0.00 0.00 3.13
60 61 1.755380 CGGACGAAGGGAGTAGGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
61 62 2.167900 CGGACGAAGGGAGTAGGAAATT 59.832 50.000 0.00 0.00 0.00 1.82
62 63 3.382546 CGGACGAAGGGAGTAGGAAATTA 59.617 47.826 0.00 0.00 0.00 1.40
63 64 4.038883 CGGACGAAGGGAGTAGGAAATTAT 59.961 45.833 0.00 0.00 0.00 1.28
64 65 5.242393 CGGACGAAGGGAGTAGGAAATTATA 59.758 44.000 0.00 0.00 0.00 0.98
65 66 6.071503 CGGACGAAGGGAGTAGGAAATTATAT 60.072 42.308 0.00 0.00 0.00 0.86
66 67 7.121759 CGGACGAAGGGAGTAGGAAATTATATA 59.878 40.741 0.00 0.00 0.00 0.86
67 68 8.249638 GGACGAAGGGAGTAGGAAATTATATAC 58.750 40.741 0.00 0.00 0.00 1.47
68 69 8.953223 ACGAAGGGAGTAGGAAATTATATACT 57.047 34.615 0.00 0.00 0.00 2.12
69 70 9.022884 ACGAAGGGAGTAGGAAATTATATACTC 57.977 37.037 12.27 12.27 42.13 2.59
76 77 9.536510 GAGTAGGAAATTATATACTCCCTCTGT 57.463 37.037 10.58 0.00 38.68 3.41
92 93 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
113 114 8.304202 AGAGCATTTAGATCACTAAAATAGCG 57.696 34.615 0.00 0.00 46.90 4.26
151 159 9.294614 CTTATATTAGTTTACGGAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
153 161 8.860780 ATATTAGTTTACGGAGGGAGTAGTAG 57.139 38.462 0.00 0.00 0.00 2.57
154 162 3.286353 AGTTTACGGAGGGAGTAGTAGC 58.714 50.000 0.00 0.00 0.00 3.58
158 166 0.945813 CGGAGGGAGTAGTAGCGAAG 59.054 60.000 0.00 0.00 0.00 3.79
159 167 1.474677 CGGAGGGAGTAGTAGCGAAGA 60.475 57.143 0.00 0.00 0.00 2.87
160 168 2.652590 GGAGGGAGTAGTAGCGAAGAA 58.347 52.381 0.00 0.00 0.00 2.52
161 169 3.022406 GGAGGGAGTAGTAGCGAAGAAA 58.978 50.000 0.00 0.00 0.00 2.52
162 170 3.181488 GGAGGGAGTAGTAGCGAAGAAAC 60.181 52.174 0.00 0.00 0.00 2.78
163 171 3.428532 AGGGAGTAGTAGCGAAGAAACA 58.571 45.455 0.00 0.00 0.00 2.83
164 172 3.444388 AGGGAGTAGTAGCGAAGAAACAG 59.556 47.826 0.00 0.00 0.00 3.16
227 240 0.318784 GAAGAGTCGGTCGCTTGTGT 60.319 55.000 0.00 0.00 36.38 3.72
273 286 3.377485 CCATGGCAGACTGAATCTTCTTG 59.623 47.826 6.65 0.00 34.41 3.02
282 295 5.068460 AGACTGAATCTTCTTGGGATAGACG 59.932 44.000 0.00 0.00 31.62 4.18
294 307 2.300437 GGGATAGACGGATGGAAGGAAG 59.700 54.545 0.00 0.00 0.00 3.46
302 330 1.087501 GATGGAAGGAAGGTGCGAAC 58.912 55.000 0.00 0.00 0.00 3.95
340 371 1.416243 AAACGGTTTCCCTTTTCCCC 58.584 50.000 0.00 0.00 26.24 4.81
351 382 2.628178 CCCTTTTCCCCTGAAAACTGAC 59.372 50.000 0.00 0.00 43.68 3.51
356 392 3.208747 TCCCCTGAAAACTGACAGAAC 57.791 47.619 10.08 0.00 36.38 3.01
361 397 4.342772 CCTGAAAACTGACAGAACGTTTG 58.657 43.478 10.08 5.61 36.38 2.93
385 425 3.492311 GAGGAGAGATCGTGGGCGC 62.492 68.421 0.00 0.00 38.14 6.53
396 436 4.028490 TGGGCGCGGATGAAGGTT 62.028 61.111 8.83 0.00 0.00 3.50
397 437 2.188469 GGGCGCGGATGAAGGTTA 59.812 61.111 8.83 0.00 0.00 2.85
398 438 2.178235 GGGCGCGGATGAAGGTTAC 61.178 63.158 8.83 0.00 0.00 2.50
399 439 2.178235 GGCGCGGATGAAGGTTACC 61.178 63.158 8.83 0.00 0.00 2.85
439 487 2.261671 CGTTCGTGGGAGGACAGG 59.738 66.667 0.00 0.00 0.00 4.00
450 498 2.088674 GAGGACAGGCACACAGACGT 62.089 60.000 0.00 0.00 0.00 4.34
492 544 5.968251 GTGTTGAACGGTTGATTATTTCG 57.032 39.130 0.00 0.00 0.00 3.46
495 547 5.008811 TGTTGAACGGTTGATTATTTCGGTT 59.991 36.000 0.00 0.00 0.00 4.44
496 548 5.692613 TGAACGGTTGATTATTTCGGTTT 57.307 34.783 0.00 0.00 0.00 3.27
497 549 6.798315 TGAACGGTTGATTATTTCGGTTTA 57.202 33.333 0.00 0.00 0.00 2.01
498 550 6.833839 TGAACGGTTGATTATTTCGGTTTAG 58.166 36.000 0.00 0.00 0.00 1.85
499 551 5.806366 ACGGTTGATTATTTCGGTTTAGG 57.194 39.130 0.00 0.00 0.00 2.69
500 552 4.637091 ACGGTTGATTATTTCGGTTTAGGG 59.363 41.667 0.00 0.00 0.00 3.53
501 553 4.496840 CGGTTGATTATTTCGGTTTAGGGC 60.497 45.833 0.00 0.00 0.00 5.19
502 554 4.399934 GGTTGATTATTTCGGTTTAGGGCA 59.600 41.667 0.00 0.00 0.00 5.36
503 555 5.068591 GGTTGATTATTTCGGTTTAGGGCAT 59.931 40.000 0.00 0.00 0.00 4.40
504 556 5.766150 TGATTATTTCGGTTTAGGGCATG 57.234 39.130 0.00 0.00 0.00 4.06
505 557 5.197451 TGATTATTTCGGTTTAGGGCATGT 58.803 37.500 0.00 0.00 0.00 3.21
506 558 6.358178 TGATTATTTCGGTTTAGGGCATGTA 58.642 36.000 0.00 0.00 0.00 2.29
507 559 6.261381 TGATTATTTCGGTTTAGGGCATGTAC 59.739 38.462 0.00 0.00 0.00 2.90
508 560 3.420300 TTTCGGTTTAGGGCATGTACA 57.580 42.857 0.00 0.00 0.00 2.90
509 561 3.420300 TTCGGTTTAGGGCATGTACAA 57.580 42.857 0.00 0.00 0.00 2.41
510 562 3.637911 TCGGTTTAGGGCATGTACAAT 57.362 42.857 0.00 0.00 0.00 2.71
511 563 3.275143 TCGGTTTAGGGCATGTACAATG 58.725 45.455 0.00 0.12 0.00 2.82
512 564 2.357637 CGGTTTAGGGCATGTACAATGG 59.642 50.000 0.00 0.00 0.00 3.16
513 565 3.361786 GGTTTAGGGCATGTACAATGGT 58.638 45.455 0.00 0.00 0.00 3.55
514 566 3.767131 GGTTTAGGGCATGTACAATGGTT 59.233 43.478 0.00 0.00 0.00 3.67
515 567 4.381505 GGTTTAGGGCATGTACAATGGTTG 60.382 45.833 0.00 0.00 0.00 3.77
516 568 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
517 569 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
518 570 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
519 571 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
520 572 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
521 573 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
522 574 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
523 575 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
524 576 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
525 577 7.301054 GCATGTACAATGGTTGATAAGATAGC 58.699 38.462 0.00 0.00 0.00 2.97
526 578 7.573843 GCATGTACAATGGTTGATAAGATAGCC 60.574 40.741 0.00 0.00 0.00 3.93
527 579 7.136822 TGTACAATGGTTGATAAGATAGCCT 57.863 36.000 0.00 0.00 0.00 4.58
528 580 7.573710 TGTACAATGGTTGATAAGATAGCCTT 58.426 34.615 0.00 0.00 38.87 4.35
529 581 8.710239 TGTACAATGGTTGATAAGATAGCCTTA 58.290 33.333 0.00 0.00 41.23 2.69
543 595 7.366847 AGATAGCCTTATCTTAAGTCTTGCA 57.633 36.000 1.63 0.00 42.67 4.08
544 596 7.972301 AGATAGCCTTATCTTAAGTCTTGCAT 58.028 34.615 1.63 0.00 42.67 3.96
545 597 7.877097 AGATAGCCTTATCTTAAGTCTTGCATG 59.123 37.037 1.63 0.00 42.67 4.06
546 598 5.749462 AGCCTTATCTTAAGTCTTGCATGT 58.251 37.500 1.63 0.00 0.00 3.21
547 599 6.889198 AGCCTTATCTTAAGTCTTGCATGTA 58.111 36.000 1.63 0.00 0.00 2.29
548 600 7.338710 AGCCTTATCTTAAGTCTTGCATGTAA 58.661 34.615 1.63 0.00 0.00 2.41
549 601 7.995488 AGCCTTATCTTAAGTCTTGCATGTAAT 59.005 33.333 1.63 0.00 0.00 1.89
550 602 8.624776 GCCTTATCTTAAGTCTTGCATGTAATT 58.375 33.333 1.63 0.00 0.00 1.40
586 638 6.916360 AAAAACATGTCTACAATGGGTCAT 57.084 33.333 0.00 0.00 0.00 3.06
587 639 6.515272 AAAACATGTCTACAATGGGTCATC 57.485 37.500 0.00 0.00 0.00 2.92
588 640 5.441718 AACATGTCTACAATGGGTCATCT 57.558 39.130 0.00 0.00 0.00 2.90
589 641 5.028549 ACATGTCTACAATGGGTCATCTC 57.971 43.478 0.00 0.00 0.00 2.75
590 642 4.718774 ACATGTCTACAATGGGTCATCTCT 59.281 41.667 0.00 0.00 0.00 3.10
591 643 5.190528 ACATGTCTACAATGGGTCATCTCTT 59.809 40.000 0.00 0.00 0.00 2.85
592 644 6.384015 ACATGTCTACAATGGGTCATCTCTTA 59.616 38.462 0.00 0.00 0.00 2.10
593 645 6.471233 TGTCTACAATGGGTCATCTCTTAG 57.529 41.667 0.00 0.00 0.00 2.18
594 646 5.958380 TGTCTACAATGGGTCATCTCTTAGT 59.042 40.000 0.00 0.00 0.00 2.24
595 647 6.096987 TGTCTACAATGGGTCATCTCTTAGTC 59.903 42.308 0.00 0.00 0.00 2.59
596 648 6.322712 GTCTACAATGGGTCATCTCTTAGTCT 59.677 42.308 0.00 0.00 0.00 3.24
597 649 6.897966 TCTACAATGGGTCATCTCTTAGTCTT 59.102 38.462 0.00 0.00 0.00 3.01
598 650 8.059461 TCTACAATGGGTCATCTCTTAGTCTTA 58.941 37.037 0.00 0.00 0.00 2.10
599 651 7.682787 ACAATGGGTCATCTCTTAGTCTTAT 57.317 36.000 0.00 0.00 0.00 1.73
600 652 7.731054 ACAATGGGTCATCTCTTAGTCTTATC 58.269 38.462 0.00 0.00 0.00 1.75
601 653 7.566879 ACAATGGGTCATCTCTTAGTCTTATCT 59.433 37.037 0.00 0.00 0.00 1.98
602 654 8.428063 CAATGGGTCATCTCTTAGTCTTATCTT 58.572 37.037 0.00 0.00 0.00 2.40
603 655 7.979786 TGGGTCATCTCTTAGTCTTATCTTT 57.020 36.000 0.00 0.00 0.00 2.52
604 656 8.012957 TGGGTCATCTCTTAGTCTTATCTTTC 57.987 38.462 0.00 0.00 0.00 2.62
605 657 7.619698 TGGGTCATCTCTTAGTCTTATCTTTCA 59.380 37.037 0.00 0.00 0.00 2.69
606 658 8.646900 GGGTCATCTCTTAGTCTTATCTTTCAT 58.353 37.037 0.00 0.00 0.00 2.57
628 680 9.880157 TTCATAACTAGCTATTCCTAAAAACGT 57.120 29.630 0.00 0.00 0.00 3.99
629 681 9.309516 TCATAACTAGCTATTCCTAAAAACGTG 57.690 33.333 0.00 0.00 0.00 4.49
630 682 6.980051 AACTAGCTATTCCTAAAAACGTGG 57.020 37.500 0.00 0.00 0.00 4.94
631 683 6.046290 ACTAGCTATTCCTAAAAACGTGGT 57.954 37.500 0.00 0.00 0.00 4.16
632 684 5.873164 ACTAGCTATTCCTAAAAACGTGGTG 59.127 40.000 0.00 0.00 0.00 4.17
633 685 4.901868 AGCTATTCCTAAAAACGTGGTGA 58.098 39.130 0.00 0.00 0.00 4.02
634 686 4.935808 AGCTATTCCTAAAAACGTGGTGAG 59.064 41.667 0.00 0.00 0.00 3.51
635 687 4.933400 GCTATTCCTAAAAACGTGGTGAGA 59.067 41.667 0.00 0.00 0.00 3.27
636 688 5.163884 GCTATTCCTAAAAACGTGGTGAGAC 60.164 44.000 0.00 0.00 0.00 3.36
637 689 3.823281 TCCTAAAAACGTGGTGAGACA 57.177 42.857 0.00 0.00 0.00 3.41
638 690 4.345859 TCCTAAAAACGTGGTGAGACAT 57.654 40.909 0.00 0.00 0.00 3.06
639 691 5.471556 TCCTAAAAACGTGGTGAGACATA 57.528 39.130 0.00 0.00 0.00 2.29
640 692 6.045072 TCCTAAAAACGTGGTGAGACATAT 57.955 37.500 0.00 0.00 0.00 1.78
641 693 6.469410 TCCTAAAAACGTGGTGAGACATATT 58.531 36.000 0.00 0.00 0.00 1.28
642 694 6.370442 TCCTAAAAACGTGGTGAGACATATTG 59.630 38.462 0.00 0.00 0.00 1.90
643 695 6.148811 CCTAAAAACGTGGTGAGACATATTGT 59.851 38.462 0.00 0.00 0.00 2.71
644 696 5.356882 AAAACGTGGTGAGACATATTGTG 57.643 39.130 0.00 0.00 0.00 3.33
645 697 2.346803 ACGTGGTGAGACATATTGTGC 58.653 47.619 0.00 0.00 0.00 4.57
646 698 2.028112 ACGTGGTGAGACATATTGTGCT 60.028 45.455 0.00 0.00 0.00 4.40
647 699 3.194755 ACGTGGTGAGACATATTGTGCTA 59.805 43.478 0.00 0.00 0.00 3.49
648 700 4.180817 CGTGGTGAGACATATTGTGCTAA 58.819 43.478 0.00 0.00 0.00 3.09
649 701 4.629634 CGTGGTGAGACATATTGTGCTAAA 59.370 41.667 0.00 0.00 0.00 1.85
650 702 5.121611 CGTGGTGAGACATATTGTGCTAAAA 59.878 40.000 0.00 0.00 0.00 1.52
651 703 6.546395 GTGGTGAGACATATTGTGCTAAAAG 58.454 40.000 0.00 0.00 0.00 2.27
652 704 6.371548 GTGGTGAGACATATTGTGCTAAAAGA 59.628 38.462 0.00 0.00 0.00 2.52
653 705 7.066284 GTGGTGAGACATATTGTGCTAAAAGAT 59.934 37.037 0.00 0.00 0.00 2.40
654 706 7.280876 TGGTGAGACATATTGTGCTAAAAGATC 59.719 37.037 0.00 0.00 0.00 2.75
655 707 7.280876 GGTGAGACATATTGTGCTAAAAGATCA 59.719 37.037 0.00 0.00 0.00 2.92
656 708 8.834465 GTGAGACATATTGTGCTAAAAGATCAT 58.166 33.333 0.00 0.00 0.00 2.45
657 709 9.049523 TGAGACATATTGTGCTAAAAGATCATC 57.950 33.333 0.00 0.00 0.00 2.92
658 710 9.270640 GAGACATATTGTGCTAAAAGATCATCT 57.729 33.333 0.00 0.00 0.00 2.90
659 711 9.270640 AGACATATTGTGCTAAAAGATCATCTC 57.729 33.333 0.00 0.00 0.00 2.75
660 712 9.270640 GACATATTGTGCTAAAAGATCATCTCT 57.729 33.333 0.00 0.00 34.96 3.10
661 713 9.624373 ACATATTGTGCTAAAAGATCATCTCTT 57.376 29.630 0.00 0.00 46.44 2.85
662 714 9.880064 CATATTGTGCTAAAAGATCATCTCTTG 57.120 33.333 0.00 0.00 43.60 3.02
663 715 7.934855 ATTGTGCTAAAAGATCATCTCTTGT 57.065 32.000 0.00 0.00 43.60 3.16
664 716 6.974932 TGTGCTAAAAGATCATCTCTTGTC 57.025 37.500 0.00 0.00 43.60 3.18
665 717 6.705302 TGTGCTAAAAGATCATCTCTTGTCT 58.295 36.000 0.00 0.00 43.60 3.41
666 718 7.164122 TGTGCTAAAAGATCATCTCTTGTCTT 58.836 34.615 0.00 0.00 43.60 3.01
667 719 7.332926 TGTGCTAAAAGATCATCTCTTGTCTTC 59.667 37.037 0.00 0.00 43.60 2.87
668 720 7.548780 GTGCTAAAAGATCATCTCTTGTCTTCT 59.451 37.037 0.00 0.00 43.60 2.85
669 721 7.763528 TGCTAAAAGATCATCTCTTGTCTTCTC 59.236 37.037 0.00 0.00 43.60 2.87
670 722 7.981225 GCTAAAAGATCATCTCTTGTCTTCTCT 59.019 37.037 0.00 0.00 43.60 3.10
671 723 9.874205 CTAAAAGATCATCTCTTGTCTTCTCTT 57.126 33.333 0.00 0.00 43.60 2.85
690 742 9.833182 CTTCTCTTAAATAAGAAAAGACAAGCC 57.167 33.333 9.63 0.00 40.91 4.35
691 743 9.574516 TTCTCTTAAATAAGAAAAGACAAGCCT 57.425 29.630 4.57 0.00 41.37 4.58
692 744 9.574516 TCTCTTAAATAAGAAAAGACAAGCCTT 57.425 29.630 4.57 0.00 41.37 4.35
705 757 9.481340 AAAAGACAAGCCTTTTCTTATGAATTC 57.519 29.630 6.30 0.00 41.08 2.17
706 758 8.414629 AAGACAAGCCTTTTCTTATGAATTCT 57.585 30.769 4.07 0.00 31.56 2.40
707 759 8.049655 AGACAAGCCTTTTCTTATGAATTCTC 57.950 34.615 7.05 0.00 31.56 2.87
708 760 7.887495 AGACAAGCCTTTTCTTATGAATTCTCT 59.113 33.333 7.05 0.00 31.56 3.10
709 761 8.049655 ACAAGCCTTTTCTTATGAATTCTCTC 57.950 34.615 7.05 0.00 31.56 3.20
710 762 7.887495 ACAAGCCTTTTCTTATGAATTCTCTCT 59.113 33.333 7.05 0.00 31.56 3.10
711 763 8.397148 CAAGCCTTTTCTTATGAATTCTCTCTC 58.603 37.037 7.05 0.00 31.56 3.20
712 764 7.053498 AGCCTTTTCTTATGAATTCTCTCTCC 58.947 38.462 7.05 0.00 31.56 3.71
713 765 7.053498 GCCTTTTCTTATGAATTCTCTCTCCT 58.947 38.462 7.05 0.00 31.56 3.69
714 766 7.226523 GCCTTTTCTTATGAATTCTCTCTCCTC 59.773 40.741 7.05 0.00 31.56 3.71
715 767 7.714813 CCTTTTCTTATGAATTCTCTCTCCTCC 59.285 40.741 7.05 0.00 31.56 4.30
716 768 7.739995 TTTCTTATGAATTCTCTCTCCTCCA 57.260 36.000 7.05 0.00 31.56 3.86
717 769 6.723298 TCTTATGAATTCTCTCTCCTCCAC 57.277 41.667 7.05 0.00 0.00 4.02
718 770 6.197903 TCTTATGAATTCTCTCTCCTCCACA 58.802 40.000 7.05 0.00 0.00 4.17
719 771 6.843333 TCTTATGAATTCTCTCTCCTCCACAT 59.157 38.462 7.05 0.00 0.00 3.21
720 772 5.549742 ATGAATTCTCTCTCCTCCACATC 57.450 43.478 7.05 0.00 0.00 3.06
721 773 4.356436 TGAATTCTCTCTCCTCCACATCA 58.644 43.478 7.05 0.00 0.00 3.07
722 774 4.967442 TGAATTCTCTCTCCTCCACATCAT 59.033 41.667 7.05 0.00 0.00 2.45
723 775 5.070180 TGAATTCTCTCTCCTCCACATCATC 59.930 44.000 7.05 0.00 0.00 2.92
724 776 3.677156 TCTCTCTCCTCCACATCATCA 57.323 47.619 0.00 0.00 0.00 3.07
725 777 4.196118 TCTCTCTCCTCCACATCATCAT 57.804 45.455 0.00 0.00 0.00 2.45
726 778 4.554683 TCTCTCTCCTCCACATCATCATT 58.445 43.478 0.00 0.00 0.00 2.57
727 779 4.967442 TCTCTCTCCTCCACATCATCATTT 59.033 41.667 0.00 0.00 0.00 2.32
728 780 6.138967 TCTCTCTCCTCCACATCATCATTTA 58.861 40.000 0.00 0.00 0.00 1.40
729 781 6.786461 TCTCTCTCCTCCACATCATCATTTAT 59.214 38.462 0.00 0.00 0.00 1.40
730 782 7.002250 TCTCTCCTCCACATCATCATTTATC 57.998 40.000 0.00 0.00 0.00 1.75
731 783 6.013898 TCTCTCCTCCACATCATCATTTATCC 60.014 42.308 0.00 0.00 0.00 2.59
732 784 5.848369 TCTCCTCCACATCATCATTTATCCT 59.152 40.000 0.00 0.00 0.00 3.24
733 785 7.018769 TCTCCTCCACATCATCATTTATCCTA 58.981 38.462 0.00 0.00 0.00 2.94
734 786 7.009179 TCCTCCACATCATCATTTATCCTAC 57.991 40.000 0.00 0.00 0.00 3.18
735 787 5.871524 CCTCCACATCATCATTTATCCTACG 59.128 44.000 0.00 0.00 0.00 3.51
736 788 6.419484 TCCACATCATCATTTATCCTACGT 57.581 37.500 0.00 0.00 0.00 3.57
737 789 6.223120 TCCACATCATCATTTATCCTACGTG 58.777 40.000 0.00 0.00 0.00 4.49
738 790 5.409520 CCACATCATCATTTATCCTACGTGG 59.590 44.000 0.00 0.00 33.73 4.94
739 791 4.997395 ACATCATCATTTATCCTACGTGGC 59.003 41.667 0.00 0.00 35.26 5.01
740 792 4.681074 TCATCATTTATCCTACGTGGCA 57.319 40.909 0.00 0.00 35.26 4.92
741 793 5.227569 TCATCATTTATCCTACGTGGCAT 57.772 39.130 0.00 0.00 35.26 4.40
742 794 5.620206 TCATCATTTATCCTACGTGGCATT 58.380 37.500 0.00 0.00 35.26 3.56
743 795 5.469760 TCATCATTTATCCTACGTGGCATTG 59.530 40.000 0.00 0.00 35.26 2.82
744 796 3.563808 TCATTTATCCTACGTGGCATTGC 59.436 43.478 0.00 0.00 35.26 3.56
745 797 3.275617 TTTATCCTACGTGGCATTGCT 57.724 42.857 8.82 0.00 35.26 3.91
746 798 4.409718 TTTATCCTACGTGGCATTGCTA 57.590 40.909 8.82 0.00 35.26 3.49
747 799 4.409718 TTATCCTACGTGGCATTGCTAA 57.590 40.909 8.82 0.00 35.26 3.09
748 800 2.309528 TCCTACGTGGCATTGCTAAG 57.690 50.000 8.82 7.52 35.26 2.18
749 801 1.828595 TCCTACGTGGCATTGCTAAGA 59.171 47.619 14.29 0.00 35.26 2.10
750 802 2.434336 TCCTACGTGGCATTGCTAAGAT 59.566 45.455 14.29 2.45 35.26 2.40
751 803 3.639561 TCCTACGTGGCATTGCTAAGATA 59.360 43.478 14.29 3.37 35.26 1.98
752 804 3.990469 CCTACGTGGCATTGCTAAGATAG 59.010 47.826 14.29 11.05 0.00 2.08
753 805 3.819564 ACGTGGCATTGCTAAGATAGA 57.180 42.857 14.29 0.00 0.00 1.98
754 806 4.137116 ACGTGGCATTGCTAAGATAGAA 57.863 40.909 14.29 0.00 0.00 2.10
755 807 3.871594 ACGTGGCATTGCTAAGATAGAAC 59.128 43.478 14.29 0.00 0.00 3.01
756 808 3.248602 CGTGGCATTGCTAAGATAGAACC 59.751 47.826 8.82 0.00 0.00 3.62
757 809 4.199310 GTGGCATTGCTAAGATAGAACCA 58.801 43.478 8.82 0.00 0.00 3.67
758 810 4.823989 GTGGCATTGCTAAGATAGAACCAT 59.176 41.667 8.82 0.00 0.00 3.55
759 811 5.300286 GTGGCATTGCTAAGATAGAACCATT 59.700 40.000 8.82 0.00 0.00 3.16
760 812 5.300034 TGGCATTGCTAAGATAGAACCATTG 59.700 40.000 8.82 0.00 0.00 2.82
761 813 5.300286 GGCATTGCTAAGATAGAACCATTGT 59.700 40.000 8.82 0.00 0.00 2.71
762 814 6.486657 GGCATTGCTAAGATAGAACCATTGTA 59.513 38.462 8.82 0.00 0.00 2.41
763 815 7.355778 GCATTGCTAAGATAGAACCATTGTAC 58.644 38.462 0.16 0.00 0.00 2.90
764 816 7.012327 GCATTGCTAAGATAGAACCATTGTACA 59.988 37.037 0.16 0.00 0.00 2.90
765 817 9.060347 CATTGCTAAGATAGAACCATTGTACAT 57.940 33.333 0.00 0.00 0.00 2.29
766 818 8.437360 TTGCTAAGATAGAACCATTGTACATG 57.563 34.615 0.00 0.00 0.00 3.21
767 819 7.564793 TGCTAAGATAGAACCATTGTACATGT 58.435 34.615 2.69 2.69 0.00 3.21
768 820 7.710907 TGCTAAGATAGAACCATTGTACATGTC 59.289 37.037 0.00 0.00 0.00 3.06
769 821 7.171678 GCTAAGATAGAACCATTGTACATGTCC 59.828 40.741 0.00 0.00 0.00 4.02
845 903 4.825634 TGATTGATCCATCTTTCAGCCATC 59.174 41.667 8.16 0.00 0.00 3.51
855 913 1.830587 TTCAGCCATCAGCCACGTCT 61.831 55.000 0.00 0.00 45.47 4.18
858 916 2.887568 CCATCAGCCACGTCTCGC 60.888 66.667 0.00 0.00 0.00 5.03
879 937 3.003897 GCTACACATAAGACCCGAGAGAG 59.996 52.174 0.00 0.00 0.00 3.20
918 985 3.070590 GGGTACTAACTGCGTCCCATAAT 59.929 47.826 0.00 0.00 35.43 1.28
919 986 4.443881 GGGTACTAACTGCGTCCCATAATT 60.444 45.833 0.00 0.00 35.43 1.40
925 992 2.951642 ACTGCGTCCCATAATTCCATTG 59.048 45.455 0.00 0.00 0.00 2.82
1050 1120 2.769120 CGCCCTCCTCCTCCTCCTA 61.769 68.421 0.00 0.00 0.00 2.94
1051 1121 1.865106 GCCCTCCTCCTCCTCCTAT 59.135 63.158 0.00 0.00 0.00 2.57
1052 1122 0.252057 GCCCTCCTCCTCCTCCTATC 60.252 65.000 0.00 0.00 0.00 2.08
1053 1123 0.411848 CCCTCCTCCTCCTCCTATCC 59.588 65.000 0.00 0.00 0.00 2.59
1054 1124 0.039035 CCTCCTCCTCCTCCTATCCG 59.961 65.000 0.00 0.00 0.00 4.18
1057 1127 0.606944 CCTCCTCCTCCTATCCGTCG 60.607 65.000 0.00 0.00 0.00 5.12
1058 1128 1.228184 TCCTCCTCCTATCCGTCGC 60.228 63.158 0.00 0.00 0.00 5.19
1060 1130 2.593725 TCCTCCTATCCGTCGCCG 60.594 66.667 0.00 0.00 0.00 6.46
1203 1279 2.126618 CTCACGCACGTAAGCCGA 60.127 61.111 0.00 0.00 45.62 5.54
1205 1281 3.475774 CACGCACGTAAGCCGACC 61.476 66.667 0.00 0.00 45.62 4.79
1248 1324 0.727398 GGCTCATTTCCCTTCGTTCG 59.273 55.000 0.00 0.00 0.00 3.95
1256 1332 0.318955 TCCCTTCGTTCGTTCGTTCC 60.319 55.000 2.67 0.00 0.00 3.62
1258 1334 1.058404 CCTTCGTTCGTTCGTTCCTC 58.942 55.000 2.67 0.00 0.00 3.71
1259 1335 1.058404 CTTCGTTCGTTCGTTCCTCC 58.942 55.000 2.67 0.00 0.00 4.30
1260 1336 0.661187 TTCGTTCGTTCGTTCCTCCG 60.661 55.000 2.67 0.00 0.00 4.63
1261 1337 1.370900 CGTTCGTTCGTTCCTCCGT 60.371 57.895 0.00 0.00 0.00 4.69
1262 1338 1.332882 CGTTCGTTCGTTCCTCCGTC 61.333 60.000 0.00 0.00 0.00 4.79
1267 1343 0.388263 GTTCGTTCCTCCGTCCAGAC 60.388 60.000 0.00 0.00 0.00 3.51
1304 1380 5.417266 TGCTTCATTTCGGATTGGTTTCATA 59.583 36.000 0.00 0.00 0.00 2.15
1315 1391 3.610040 TGGTTTCATAGATGCTGACGT 57.390 42.857 0.00 0.00 0.00 4.34
1316 1392 4.729227 TGGTTTCATAGATGCTGACGTA 57.271 40.909 0.00 0.00 0.00 3.57
1331 1420 2.202272 GTACGCGCTTCTCGTCGT 60.202 61.111 5.73 10.31 46.43 4.34
1353 1442 4.101448 CACCGGCCTCCCCTTCAG 62.101 72.222 0.00 0.00 0.00 3.02
1480 1569 1.512926 CGCAGCTCAAGGTAACAACT 58.487 50.000 0.00 0.00 41.41 3.16
1481 1570 1.461127 CGCAGCTCAAGGTAACAACTC 59.539 52.381 0.00 0.00 41.41 3.01
1482 1571 2.772287 GCAGCTCAAGGTAACAACTCT 58.228 47.619 0.00 0.00 41.41 3.24
1483 1572 3.142174 GCAGCTCAAGGTAACAACTCTT 58.858 45.455 0.00 0.00 41.41 2.85
1484 1573 4.315803 GCAGCTCAAGGTAACAACTCTTA 58.684 43.478 0.00 0.00 41.41 2.10
1486 1575 4.691216 CAGCTCAAGGTAACAACTCTTACC 59.309 45.833 0.55 0.55 44.33 2.85
1487 1576 4.347000 AGCTCAAGGTAACAACTCTTACCA 59.653 41.667 10.09 0.00 45.81 3.25
1488 1577 5.013183 AGCTCAAGGTAACAACTCTTACCAT 59.987 40.000 10.09 0.00 45.81 3.55
1490 1579 5.475719 TCAAGGTAACAACTCTTACCATCG 58.524 41.667 10.09 0.00 45.81 3.84
1497 1607 3.078196 TCTTACCATCGCCGCCCA 61.078 61.111 0.00 0.00 0.00 5.36
1501 1611 2.023414 TTACCATCGCCGCCCACTAG 62.023 60.000 0.00 0.00 0.00 2.57
1523 1633 6.038997 AGTACTCTGTTACCATTTCCAGTC 57.961 41.667 0.00 0.00 0.00 3.51
1650 1767 0.463116 GCCACCACCTACCATTACCG 60.463 60.000 0.00 0.00 0.00 4.02
1665 1782 0.108520 TACCGAATCTCACCGCAACC 60.109 55.000 0.00 0.00 0.00 3.77
1727 1844 9.839185 ATGCCTACTCCTACTCCTAATAAAATA 57.161 33.333 0.00 0.00 0.00 1.40
1774 1894 7.652727 TGCTATTATTACTAGACTCAGTGCAG 58.347 38.462 0.00 0.00 0.00 4.41
1804 1930 6.019779 TGTTGGTATTTCTTTGGAAATCCG 57.980 37.500 7.17 0.00 45.73 4.18
1834 1960 3.575687 GCTATGCCAAAATGCCCTAAGAT 59.424 43.478 0.00 0.00 0.00 2.40
1966 2093 2.802247 TCTTGCTGTGTCAACTGAATCG 59.198 45.455 0.00 0.00 0.00 3.34
1967 2094 2.238942 TGCTGTGTCAACTGAATCGT 57.761 45.000 0.00 0.00 0.00 3.73
2110 2237 1.887198 ACAAGGTCTCACTGTCCTACG 59.113 52.381 0.00 0.00 33.12 3.51
2151 2278 8.954950 CTTTCGGAGGAATATATATCAGCAAT 57.045 34.615 0.00 0.00 30.88 3.56
2217 2344 5.422666 TTTTACACTTGACACATGCTCTG 57.577 39.130 0.00 0.00 0.00 3.35
2231 2358 0.459934 GCTCTGCTACTGCTCCACTG 60.460 60.000 0.00 0.00 40.48 3.66
2243 2370 2.147150 GCTCCACTGTTTTCTGTCCTC 58.853 52.381 0.00 0.00 0.00 3.71
2248 2375 5.261216 TCCACTGTTTTCTGTCCTCTTTTT 58.739 37.500 0.00 0.00 0.00 1.94
2281 2408 9.492973 CTTTTGTTTGAATTCAATCCAGGTATT 57.507 29.630 21.10 0.00 35.55 1.89
2312 2439 7.777910 TCTGTTTTCCTTTTCCATAAAGACTCA 59.222 33.333 0.00 0.00 0.00 3.41
2313 2440 8.477419 TGTTTTCCTTTTCCATAAAGACTCAT 57.523 30.769 0.00 0.00 0.00 2.90
2445 2591 9.334947 TCAAATAGAATAGAGCATGGAAAAGAG 57.665 33.333 0.00 0.00 0.00 2.85
2446 2592 9.334947 CAAATAGAATAGAGCATGGAAAAGAGA 57.665 33.333 0.00 0.00 0.00 3.10
2447 2593 9.558396 AAATAGAATAGAGCATGGAAAAGAGAG 57.442 33.333 0.00 0.00 0.00 3.20
2593 2756 3.868369 GCACAGATGCCAACCACTAGTAA 60.868 47.826 0.00 0.00 46.97 2.24
2610 2773 7.438459 CCACTAGTAATTAGGTACAACTGATGC 59.562 40.741 0.00 0.00 33.42 3.91
2669 2832 1.610886 GGTTGGTCTAGTTGCCACCTC 60.611 57.143 3.60 0.00 34.02 3.85
2670 2833 1.071699 GTTGGTCTAGTTGCCACCTCA 59.928 52.381 3.60 0.00 34.02 3.86
2722 2887 5.591472 GCCTCGGTACCCAAATTTAGTAAAT 59.409 40.000 6.25 2.10 0.00 1.40
2759 2924 4.041691 GGCTAGGCTTATTGGGTGATTAGA 59.958 45.833 9.46 0.00 0.00 2.10
2797 2962 9.102757 TCAAAGCATAATCATCAGAACTAACTC 57.897 33.333 0.00 0.00 0.00 3.01
2854 3023 7.569639 TCACGAGTAGTAGAATAAAGATGCT 57.430 36.000 0.00 0.00 0.00 3.79
2875 3046 0.179018 AAACCCTCAGACACTGGTGC 60.179 55.000 0.17 0.00 31.51 5.01
2885 3056 0.261696 ACACTGGTGCTTCCCCTTTT 59.738 50.000 0.17 0.00 34.77 2.27
2887 3058 2.110011 ACACTGGTGCTTCCCCTTTTAT 59.890 45.455 0.17 0.00 34.77 1.40
2926 3098 5.240623 TGTCGCAATTAGACTTGGTTCATTT 59.759 36.000 12.56 0.00 39.24 2.32
2946 3118 8.954950 TCATTTGTTTATTTTCTTTTGCCTCA 57.045 26.923 0.00 0.00 0.00 3.86
2957 3129 4.079253 TCTTTTGCCTCATTAGGTGGTTC 58.921 43.478 0.00 0.00 45.64 3.62
2960 3329 0.252197 GCCTCATTAGGTGGTTCGGT 59.748 55.000 0.00 0.00 45.64 4.69
2966 3335 0.320374 TTAGGTGGTTCGGTGCTCAG 59.680 55.000 0.00 0.00 0.00 3.35
2983 3352 5.511088 GCTCAGTGCATTGAAAATGAAAG 57.489 39.130 13.35 0.28 42.31 2.62
2984 3353 4.387862 GCTCAGTGCATTGAAAATGAAAGG 59.612 41.667 13.35 0.00 42.31 3.11
2985 3354 5.775686 CTCAGTGCATTGAAAATGAAAGGA 58.224 37.500 13.35 0.00 0.00 3.36
2986 3355 6.349243 TCAGTGCATTGAAAATGAAAGGAT 57.651 33.333 9.78 0.00 0.00 3.24
2987 3356 6.761312 TCAGTGCATTGAAAATGAAAGGATT 58.239 32.000 9.78 0.00 0.00 3.01
2988 3357 6.869913 TCAGTGCATTGAAAATGAAAGGATTC 59.130 34.615 9.78 0.00 36.04 2.52
2989 3358 6.872020 CAGTGCATTGAAAATGAAAGGATTCT 59.128 34.615 2.46 0.00 36.48 2.40
2990 3359 7.386848 CAGTGCATTGAAAATGAAAGGATTCTT 59.613 33.333 2.46 0.00 36.48 2.52
3004 3373 7.175641 TGAAAGGATTCTTGATTCTTGAAGTCC 59.824 37.037 0.00 0.00 33.67 3.85
3013 3382 2.496899 TCTTGAAGTCCCTGATTGCC 57.503 50.000 0.00 0.00 0.00 4.52
3019 3388 1.915141 AGTCCCTGATTGCCAAACAG 58.085 50.000 7.67 7.67 0.00 3.16
3057 3427 8.706322 TCATGTCTAGTTCTGGTATTATGCTA 57.294 34.615 0.00 0.00 0.00 3.49
3059 3429 7.286215 TGTCTAGTTCTGGTATTATGCTACC 57.714 40.000 0.00 0.00 41.39 3.18
3067 3437 5.444744 TGGTATTATGCTACCAAGGTGTT 57.555 39.130 1.07 0.00 46.33 3.32
3110 3480 0.890996 GGAAGGGCCACACTCACTTG 60.891 60.000 6.18 0.00 36.34 3.16
3132 3502 0.034756 TTATCATGCCCATCCCGTCG 59.965 55.000 0.00 0.00 0.00 5.12
3165 3538 7.715265 TTCAGTCAATGTTCTGAAAGTAGAC 57.285 36.000 16.04 0.00 44.29 2.59
3167 3540 6.042093 TCAGTCAATGTTCTGAAAGTAGACCT 59.958 38.462 7.96 0.00 37.69 3.85
3213 3586 2.441410 TGCAGTGTTTGTGTTGGAGAA 58.559 42.857 0.00 0.00 0.00 2.87
3220 3593 4.097892 GTGTTTGTGTTGGAGAATTGGAGT 59.902 41.667 0.00 0.00 0.00 3.85
3250 3623 8.911918 TTTTTGAGTAGTTATTTCTAGCCACA 57.088 30.769 0.00 0.00 0.00 4.17
3273 3646 5.470098 CACTTCACAAGTAGGCTAACATTGT 59.530 40.000 12.66 12.66 40.46 2.71
3342 3715 5.651139 GCCCTATATCTCGTATACACTTCCA 59.349 44.000 3.32 0.00 0.00 3.53
3445 3819 3.502191 TTTTTCTGTTGGTGTGCAGAC 57.498 42.857 5.20 5.20 40.91 3.51
3453 3827 5.301551 TCTGTTGGTGTGCAGACATTTTAAT 59.698 36.000 16.68 0.00 36.89 1.40
3456 3830 6.478344 TGTTGGTGTGCAGACATTTTAATTTC 59.522 34.615 16.68 0.00 33.63 2.17
3497 3875 8.567948 CATTGGTTTCAAACTACATTCTACTGT 58.432 33.333 0.00 0.00 36.36 3.55
3502 3880 9.048446 GTTTCAAACTACATTCTACTGTGGTAA 57.952 33.333 0.00 0.00 39.58 2.85
3545 3923 7.981102 ACTGTCTAATTTTCAGTTACCCTTC 57.019 36.000 4.72 0.00 39.00 3.46
3546 3924 7.514721 ACTGTCTAATTTTCAGTTACCCTTCA 58.485 34.615 4.72 0.00 39.00 3.02
3547 3925 7.996644 ACTGTCTAATTTTCAGTTACCCTTCAA 59.003 33.333 4.72 0.00 39.00 2.69
3551 3929 9.449719 TCTAATTTTCAGTTACCCTTCAATCTC 57.550 33.333 0.00 0.00 0.00 2.75
3552 3930 9.454859 CTAATTTTCAGTTACCCTTCAATCTCT 57.545 33.333 0.00 0.00 0.00 3.10
3553 3931 7.693969 ATTTTCAGTTACCCTTCAATCTCTG 57.306 36.000 0.00 0.00 0.00 3.35
3554 3932 5.825593 TTCAGTTACCCTTCAATCTCTGT 57.174 39.130 0.00 0.00 0.00 3.41
3718 4154 7.516198 ACAGCATTTGTAAGATTATCCCATC 57.484 36.000 0.00 0.00 38.56 3.51
3721 4157 8.582437 CAGCATTTGTAAGATTATCCCATCATT 58.418 33.333 0.00 0.00 0.00 2.57
3735 4171 7.781324 ATCCCATCATTAGTTGAACACTTTT 57.219 32.000 0.00 0.00 38.03 2.27
3884 4320 3.409570 GGTTTTCCTGGAAGACTACACC 58.590 50.000 24.20 14.04 34.07 4.16
4101 4537 3.195661 GTCGTAGAAAGCCAATGTAGGG 58.804 50.000 0.00 0.00 39.69 3.53
4162 4602 5.755330 TTTTAATTTTTCGCGCCATTCTC 57.245 34.783 0.00 0.00 0.00 2.87
4186 4626 9.294030 CTCTGTTGATATGTTTTTGCTTTATCC 57.706 33.333 0.00 0.00 0.00 2.59
4235 4675 4.520846 CAAGTGCCCGAATCGCGC 62.521 66.667 5.23 5.23 39.11 6.86
4333 4773 1.069358 GGGTTTGCGGGAACAATTCAA 59.931 47.619 0.00 0.00 0.00 2.69
4441 4881 3.018856 TGCCAACATGCTAAAGATCCTG 58.981 45.455 0.00 0.00 0.00 3.86
4475 4915 6.740110 AGCTTATTTAGTCGTCGATCAGATT 58.260 36.000 0.00 0.00 0.00 2.40
4486 4926 6.916387 GTCGTCGATCAGATTGGTTTCTTATA 59.084 38.462 0.00 0.00 0.00 0.98
4564 5004 3.386932 AATGGCCATCTTGTATGTGGT 57.613 42.857 21.08 0.00 35.44 4.16
4599 5039 3.660865 CTTACTGCAAGGTAAGGACGTT 58.339 45.455 14.95 0.00 42.67 3.99
4607 5047 4.560108 GCAAGGTAAGGACGTTTCTGTCTA 60.560 45.833 0.00 0.00 38.91 2.59
4617 5057 4.751060 ACGTTTCTGTCTAACAGTGTTCA 58.249 39.130 12.82 3.69 46.03 3.18
4632 5072 5.527582 ACAGTGTTCAGTCCTGTTACATTTC 59.472 40.000 0.00 0.00 36.03 2.17
4765 5256 1.086696 CATTCGGAACCTGCGTGATT 58.913 50.000 0.00 0.00 31.47 2.57
4771 5262 0.036388 GAACCTGCGTGATTCCTCCA 60.036 55.000 0.00 0.00 0.00 3.86
4912 5403 0.040942 TGGCTCTGCTCTTCCTCTCT 59.959 55.000 0.00 0.00 0.00 3.10
4914 5405 1.134729 GGCTCTGCTCTTCCTCTCTTG 60.135 57.143 0.00 0.00 0.00 3.02
4916 5407 2.233431 GCTCTGCTCTTCCTCTCTTGAA 59.767 50.000 0.00 0.00 0.00 2.69
4945 5436 1.298859 CTTCAGTTAGCGGGGTGTGC 61.299 60.000 0.00 0.00 0.00 4.57
4980 5471 3.564262 TGCCATCCTGAGCAGAAAG 57.436 52.632 0.00 0.00 33.08 2.62
5152 5652 4.428570 TGATATATCTCCACATGGCCAGA 58.571 43.478 13.05 1.19 34.44 3.86
5165 5908 7.448161 TCCACATGGCCAGATAGTTTTTATATG 59.552 37.037 13.05 1.03 34.44 1.78
5167 5910 8.632679 CACATGGCCAGATAGTTTTTATATGTT 58.367 33.333 13.05 0.00 0.00 2.71
5231 6137 8.977412 AGGAGAATTGGTTGAAAAACTCTTAAA 58.023 29.630 0.00 0.00 32.01 1.52
5326 6264 7.119407 GCTAGTTTAGTTTAGCCTACAAAAGCT 59.881 37.037 0.00 0.00 43.20 3.74
5328 6266 8.913487 AGTTTAGTTTAGCCTACAAAAGCTTA 57.087 30.769 0.00 0.00 40.56 3.09
5329 6267 9.346005 AGTTTAGTTTAGCCTACAAAAGCTTAA 57.654 29.630 0.00 0.00 40.56 1.85
5348 6286 9.832445 AAGCTTAATATATTTTGAGACGGAAGA 57.168 29.630 2.68 0.00 0.00 2.87
5359 6297 4.197750 TGAGACGGAAGAGGTAGTACATC 58.802 47.826 6.86 6.86 0.00 3.06
5389 6331 0.329261 TGAATGAGTGCTGGGGAAGG 59.671 55.000 0.00 0.00 0.00 3.46
5401 6343 0.692756 GGGGAAGGAAGAGAGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
5413 6355 3.958860 GGAGGGCCCATGATCCGG 61.959 72.222 27.56 0.00 34.14 5.14
5417 6359 4.962836 GGCCCATGATCCGGCTGG 62.963 72.222 4.71 4.71 45.01 4.85
5421 6363 2.593725 CATGATCCGGCTGGCTGG 60.594 66.667 13.82 13.82 43.69 4.85
5422 6364 4.575973 ATGATCCGGCTGGCTGGC 62.576 66.667 15.05 7.92 42.10 4.85
5474 6416 3.084039 GTCCAAATCCAGAACAGCATCA 58.916 45.455 0.00 0.00 0.00 3.07
5525 6469 2.607635 AGTGCCAACTATTTACATCGCG 59.392 45.455 0.00 0.00 33.79 5.87
5555 6499 5.362143 TGGGATTGATTGATTAATTTCGCCA 59.638 36.000 0.00 0.00 0.00 5.69
5558 6502 7.116805 GGGATTGATTGATTAATTTCGCCAATC 59.883 37.037 15.10 15.10 41.84 2.67
5560 6504 9.897744 GATTGATTGATTAATTTCGCCAATCTA 57.102 29.630 19.50 15.29 41.94 1.98
5563 6507 9.897744 TGATTGATTAATTTCGCCAATCTATTC 57.102 29.630 19.50 4.17 41.94 1.75
5566 6510 8.675705 TGATTAATTTCGCCAATCTATTCTCA 57.324 30.769 0.00 0.00 31.37 3.27
5567 6511 8.559536 TGATTAATTTCGCCAATCTATTCTCAC 58.440 33.333 0.00 0.00 31.37 3.51
5568 6512 7.857734 TTAATTTCGCCAATCTATTCTCACA 57.142 32.000 0.00 0.00 0.00 3.58
5569 6513 5.741388 ATTTCGCCAATCTATTCTCACAC 57.259 39.130 0.00 0.00 0.00 3.82
5570 6514 3.885724 TCGCCAATCTATTCTCACACA 57.114 42.857 0.00 0.00 0.00 3.72
5572 6516 4.183865 TCGCCAATCTATTCTCACACAAG 58.816 43.478 0.00 0.00 0.00 3.16
5573 6517 4.081697 TCGCCAATCTATTCTCACACAAGA 60.082 41.667 0.00 0.00 0.00 3.02
5577 6521 6.623767 GCCAATCTATTCTCACACAAGAAACC 60.624 42.308 0.00 0.00 38.69 3.27
5587 6531 1.688197 CACAAGAAACCATGCCCACTT 59.312 47.619 0.00 0.00 0.00 3.16
5588 6532 2.890311 CACAAGAAACCATGCCCACTTA 59.110 45.455 0.00 0.00 0.00 2.24
5589 6533 2.890945 ACAAGAAACCATGCCCACTTAC 59.109 45.455 0.00 0.00 0.00 2.34
5590 6534 3.157087 CAAGAAACCATGCCCACTTACT 58.843 45.455 0.00 0.00 0.00 2.24
5591 6535 3.073274 AGAAACCATGCCCACTTACTC 57.927 47.619 0.00 0.00 0.00 2.59
5601 6545 3.039011 GCCCACTTACTCTTATCCTCCA 58.961 50.000 0.00 0.00 0.00 3.86
5602 6546 3.070302 GCCCACTTACTCTTATCCTCCAG 59.930 52.174 0.00 0.00 0.00 3.86
5613 6557 3.027533 TCCTCCAGGAAATCCCAGG 57.972 57.895 0.00 0.00 42.18 4.45
5616 6560 1.064389 CCTCCAGGAAATCCCAGGTTC 60.064 57.143 8.03 0.00 41.97 3.62
5617 6561 1.918957 CTCCAGGAAATCCCAGGTTCT 59.081 52.381 8.03 0.00 41.97 3.01
5620 6564 1.279271 CAGGAAATCCCAGGTTCTCGT 59.721 52.381 0.00 0.00 37.41 4.18
5621 6565 1.279271 AGGAAATCCCAGGTTCTCGTG 59.721 52.381 0.00 0.00 37.41 4.35
5623 6567 1.003233 GAAATCCCAGGTTCTCGTGGT 59.997 52.381 6.28 0.00 45.06 4.16
5625 6569 1.946984 ATCCCAGGTTCTCGTGGTTA 58.053 50.000 6.28 0.00 45.06 2.85
5626 6570 1.946984 TCCCAGGTTCTCGTGGTTAT 58.053 50.000 6.28 0.00 45.06 1.89
5627 6571 2.262637 TCCCAGGTTCTCGTGGTTATT 58.737 47.619 6.28 0.00 45.06 1.40
5713 6658 3.563390 GCAGGGAGAGAATAGCATCAAAC 59.437 47.826 0.00 0.00 0.00 2.93
5751 6696 3.433740 CCTCCCAGGTAGCAAGAATAACC 60.434 52.174 0.00 0.00 0.00 2.85
5812 6757 9.400638 TGATTTAAATACGTTACTTTTTGCTGG 57.599 29.630 0.00 0.00 0.00 4.85
5890 6840 3.807209 GCAGTGTAAACTGTGGAGGTGAT 60.807 47.826 14.60 0.00 39.76 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.434420 GAGGAATGAAGGAATGAATGTATCTAG 57.566 37.037 0.00 0.00 0.00 2.43
1 2 8.378565 GGAGGAATGAAGGAATGAATGTATCTA 58.621 37.037 0.00 0.00 0.00 1.98
3 4 6.148480 CGGAGGAATGAAGGAATGAATGTATC 59.852 42.308 0.00 0.00 0.00 2.24
4 5 6.000219 CGGAGGAATGAAGGAATGAATGTAT 59.000 40.000 0.00 0.00 0.00 2.29
7 8 4.274459 GTCGGAGGAATGAAGGAATGAATG 59.726 45.833 0.00 0.00 0.00 2.67
8 9 4.080356 TGTCGGAGGAATGAAGGAATGAAT 60.080 41.667 0.00 0.00 0.00 2.57
9 10 3.263170 TGTCGGAGGAATGAAGGAATGAA 59.737 43.478 0.00 0.00 0.00 2.57
10 11 2.837591 TGTCGGAGGAATGAAGGAATGA 59.162 45.455 0.00 0.00 0.00 2.57
11 12 3.266510 TGTCGGAGGAATGAAGGAATG 57.733 47.619 0.00 0.00 0.00 2.67
12 13 3.264450 ACTTGTCGGAGGAATGAAGGAAT 59.736 43.478 0.00 0.00 0.00 3.01
13 14 2.637872 ACTTGTCGGAGGAATGAAGGAA 59.362 45.455 0.00 0.00 0.00 3.36
14 15 2.257207 ACTTGTCGGAGGAATGAAGGA 58.743 47.619 0.00 0.00 0.00 3.36
15 16 2.770164 ACTTGTCGGAGGAATGAAGG 57.230 50.000 0.00 0.00 0.00 3.46
16 17 5.294552 GGAAATACTTGTCGGAGGAATGAAG 59.705 44.000 0.00 0.00 0.00 3.02
17 18 5.183228 GGAAATACTTGTCGGAGGAATGAA 58.817 41.667 0.00 0.00 0.00 2.57
18 19 4.679639 CGGAAATACTTGTCGGAGGAATGA 60.680 45.833 0.00 0.00 0.00 2.57
19 20 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
20 21 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
21 22 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
22 23 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
23 24 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
24 25 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
25 26 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
26 27 1.135315 TCGTCCGGAAATACTTGTCGG 60.135 52.381 5.23 0.00 41.80 4.79
27 28 2.267188 TCGTCCGGAAATACTTGTCG 57.733 50.000 5.23 1.58 0.00 4.35
28 29 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
29 30 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
30 31 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
31 32 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
32 33 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
33 34 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
34 35 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
35 36 1.755380 CTACTCCCTTCGTCCGGAAAT 59.245 52.381 5.23 0.00 33.34 2.17
36 37 1.180029 CTACTCCCTTCGTCCGGAAA 58.820 55.000 5.23 0.00 33.34 3.13
37 38 0.682209 CCTACTCCCTTCGTCCGGAA 60.682 60.000 5.23 0.00 0.00 4.30
38 39 1.077212 CCTACTCCCTTCGTCCGGA 60.077 63.158 0.00 0.00 0.00 5.14
39 40 0.682209 TTCCTACTCCCTTCGTCCGG 60.682 60.000 0.00 0.00 0.00 5.14
40 41 1.180029 TTTCCTACTCCCTTCGTCCG 58.820 55.000 0.00 0.00 0.00 4.79
41 42 3.908643 AATTTCCTACTCCCTTCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
42 43 9.022884 AGTATATAATTTCCTACTCCCTTCGTC 57.977 37.037 0.00 0.00 0.00 4.20
43 44 8.953223 AGTATATAATTTCCTACTCCCTTCGT 57.047 34.615 0.00 0.00 0.00 3.85
50 51 9.536510 ACAGAGGGAGTATATAATTTCCTACTC 57.463 37.037 6.17 10.34 39.44 2.59
66 67 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
67 68 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
68 69 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
133 136 3.286353 GCTACTACTCCCTCCGTAAACT 58.714 50.000 0.00 0.00 0.00 2.66
151 159 2.806244 GGCAACTTCTGTTTCTTCGCTA 59.194 45.455 0.00 0.00 33.52 4.26
152 160 1.604278 GGCAACTTCTGTTTCTTCGCT 59.396 47.619 0.00 0.00 33.52 4.93
153 161 1.333619 TGGCAACTTCTGTTTCTTCGC 59.666 47.619 0.00 0.00 33.52 4.70
154 162 3.003689 ACATGGCAACTTCTGTTTCTTCG 59.996 43.478 0.00 0.00 33.52 3.79
158 166 3.316308 ACAGACATGGCAACTTCTGTTTC 59.684 43.478 18.22 0.00 44.33 2.78
159 167 3.290710 ACAGACATGGCAACTTCTGTTT 58.709 40.909 18.22 0.23 44.33 2.83
160 168 2.936202 ACAGACATGGCAACTTCTGTT 58.064 42.857 18.22 7.49 44.33 3.16
161 169 2.645838 ACAGACATGGCAACTTCTGT 57.354 45.000 18.22 18.22 42.96 3.41
162 170 2.227388 GGAACAGACATGGCAACTTCTG 59.773 50.000 17.20 17.20 41.56 3.02
163 171 2.158623 TGGAACAGACATGGCAACTTCT 60.159 45.455 0.00 0.00 37.61 2.85
164 172 2.229792 TGGAACAGACATGGCAACTTC 58.770 47.619 0.00 0.00 37.61 3.01
201 214 0.096628 CGACCGACTCTTCTGGTACG 59.903 60.000 0.00 0.00 35.75 3.67
202 215 0.179169 GCGACCGACTCTTCTGGTAC 60.179 60.000 0.00 0.00 35.75 3.34
203 216 0.322277 AGCGACCGACTCTTCTGGTA 60.322 55.000 0.00 0.00 35.75 3.25
204 217 1.179814 AAGCGACCGACTCTTCTGGT 61.180 55.000 0.00 0.00 39.12 4.00
205 218 0.734253 CAAGCGACCGACTCTTCTGG 60.734 60.000 0.00 0.00 0.00 3.86
206 219 0.039074 ACAAGCGACCGACTCTTCTG 60.039 55.000 0.00 0.00 0.00 3.02
273 286 2.011122 TCCTTCCATCCGTCTATCCC 57.989 55.000 0.00 0.00 0.00 3.85
282 295 0.035439 TTCGCACCTTCCTTCCATCC 60.035 55.000 0.00 0.00 0.00 3.51
302 330 1.560004 TTCGCTTCGCTGTGCTCTTG 61.560 55.000 0.00 0.00 0.00 3.02
311 339 0.041576 GAAACCGTTTTCGCTTCGCT 60.042 50.000 0.00 0.00 42.58 4.93
340 371 4.788100 CACAAACGTTCTGTCAGTTTTCAG 59.212 41.667 0.00 0.00 36.12 3.02
351 382 1.070134 TCCTCTCCCACAAACGTTCTG 59.930 52.381 0.00 5.10 0.00 3.02
356 392 1.257743 TCTCTCCTCTCCCACAAACG 58.742 55.000 0.00 0.00 0.00 3.60
361 397 1.028905 CACGATCTCTCCTCTCCCAC 58.971 60.000 0.00 0.00 0.00 4.61
396 436 4.841813 TCTTCCAGTTTGACATGGTAGGTA 59.158 41.667 0.00 0.00 35.37 3.08
397 437 3.650942 TCTTCCAGTTTGACATGGTAGGT 59.349 43.478 0.00 0.00 35.37 3.08
398 438 4.003648 GTCTTCCAGTTTGACATGGTAGG 58.996 47.826 0.00 0.00 35.37 3.18
399 439 3.679980 CGTCTTCCAGTTTGACATGGTAG 59.320 47.826 0.00 0.00 37.84 3.18
439 487 1.068474 GATGTACCACGTCTGTGTGC 58.932 55.000 0.00 0.00 44.92 4.57
492 544 3.361786 ACCATTGTACATGCCCTAAACC 58.638 45.455 0.00 0.00 0.00 3.27
495 547 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
496 548 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
497 549 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
498 550 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
499 551 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
500 552 7.301054 GCTATCTTATCAACCATTGTACATGC 58.699 38.462 0.00 0.00 0.00 4.06
501 553 7.663081 AGGCTATCTTATCAACCATTGTACATG 59.337 37.037 0.00 0.00 0.00 3.21
502 554 7.749666 AGGCTATCTTATCAACCATTGTACAT 58.250 34.615 0.00 0.00 0.00 2.29
503 555 7.136822 AGGCTATCTTATCAACCATTGTACA 57.863 36.000 0.00 0.00 0.00 2.90
504 556 9.726438 ATAAGGCTATCTTATCAACCATTGTAC 57.274 33.333 0.00 0.00 43.20 2.90
519 571 7.366847 TGCAAGACTTAAGATAAGGCTATCT 57.633 36.000 10.09 0.00 45.21 1.98
520 572 7.659390 ACATGCAAGACTTAAGATAAGGCTATC 59.341 37.037 10.09 2.61 33.71 2.08
521 573 7.512992 ACATGCAAGACTTAAGATAAGGCTAT 58.487 34.615 10.09 0.00 33.71 2.97
522 574 6.889198 ACATGCAAGACTTAAGATAAGGCTA 58.111 36.000 10.09 0.00 33.71 3.93
523 575 5.749462 ACATGCAAGACTTAAGATAAGGCT 58.251 37.500 10.09 0.00 37.17 4.58
524 576 7.553881 TTACATGCAAGACTTAAGATAAGGC 57.446 36.000 10.09 6.70 0.00 4.35
563 615 6.721208 AGATGACCCATTGTAGACATGTTTTT 59.279 34.615 0.00 0.00 0.00 1.94
564 616 6.248433 AGATGACCCATTGTAGACATGTTTT 58.752 36.000 0.00 0.00 0.00 2.43
565 617 5.819991 AGATGACCCATTGTAGACATGTTT 58.180 37.500 0.00 0.00 0.00 2.83
566 618 5.190528 AGAGATGACCCATTGTAGACATGTT 59.809 40.000 0.00 0.00 0.00 2.71
567 619 4.718774 AGAGATGACCCATTGTAGACATGT 59.281 41.667 0.00 0.00 0.00 3.21
568 620 5.287674 AGAGATGACCCATTGTAGACATG 57.712 43.478 0.00 0.00 0.00 3.21
569 621 5.965033 AAGAGATGACCCATTGTAGACAT 57.035 39.130 0.00 0.00 0.00 3.06
570 622 5.958380 ACTAAGAGATGACCCATTGTAGACA 59.042 40.000 0.00 0.00 0.00 3.41
571 623 6.322712 AGACTAAGAGATGACCCATTGTAGAC 59.677 42.308 0.00 0.00 0.00 2.59
572 624 6.436027 AGACTAAGAGATGACCCATTGTAGA 58.564 40.000 0.00 0.00 0.00 2.59
573 625 6.723298 AGACTAAGAGATGACCCATTGTAG 57.277 41.667 0.00 0.00 0.00 2.74
574 626 8.783660 ATAAGACTAAGAGATGACCCATTGTA 57.216 34.615 0.00 0.00 0.00 2.41
575 627 7.566879 AGATAAGACTAAGAGATGACCCATTGT 59.433 37.037 0.00 0.00 0.00 2.71
576 628 7.961351 AGATAAGACTAAGAGATGACCCATTG 58.039 38.462 0.00 0.00 0.00 2.82
577 629 8.560124 AAGATAAGACTAAGAGATGACCCATT 57.440 34.615 0.00 0.00 0.00 3.16
578 630 8.560124 AAAGATAAGACTAAGAGATGACCCAT 57.440 34.615 0.00 0.00 0.00 4.00
579 631 7.619698 TGAAAGATAAGACTAAGAGATGACCCA 59.380 37.037 0.00 0.00 0.00 4.51
580 632 8.012957 TGAAAGATAAGACTAAGAGATGACCC 57.987 38.462 0.00 0.00 0.00 4.46
602 654 9.880157 ACGTTTTTAGGAATAGCTAGTTATGAA 57.120 29.630 0.00 0.00 0.00 2.57
603 655 9.309516 CACGTTTTTAGGAATAGCTAGTTATGA 57.690 33.333 0.00 0.00 0.00 2.15
604 656 8.548721 CCACGTTTTTAGGAATAGCTAGTTATG 58.451 37.037 0.00 0.00 0.00 1.90
605 657 8.262933 ACCACGTTTTTAGGAATAGCTAGTTAT 58.737 33.333 0.00 0.00 0.00 1.89
606 658 7.546667 CACCACGTTTTTAGGAATAGCTAGTTA 59.453 37.037 0.00 0.00 0.00 2.24
607 659 6.370718 CACCACGTTTTTAGGAATAGCTAGTT 59.629 38.462 0.00 0.00 0.00 2.24
608 660 5.873164 CACCACGTTTTTAGGAATAGCTAGT 59.127 40.000 0.00 0.00 0.00 2.57
609 661 6.103997 TCACCACGTTTTTAGGAATAGCTAG 58.896 40.000 0.00 0.00 0.00 3.42
610 662 6.040209 TCACCACGTTTTTAGGAATAGCTA 57.960 37.500 0.00 0.00 0.00 3.32
611 663 4.901868 TCACCACGTTTTTAGGAATAGCT 58.098 39.130 0.00 0.00 0.00 3.32
612 664 4.933400 TCTCACCACGTTTTTAGGAATAGC 59.067 41.667 0.00 0.00 0.00 2.97
613 665 5.929992 TGTCTCACCACGTTTTTAGGAATAG 59.070 40.000 0.00 0.00 0.00 1.73
614 666 5.856156 TGTCTCACCACGTTTTTAGGAATA 58.144 37.500 0.00 0.00 0.00 1.75
615 667 4.710324 TGTCTCACCACGTTTTTAGGAAT 58.290 39.130 0.00 0.00 0.00 3.01
616 668 4.139859 TGTCTCACCACGTTTTTAGGAA 57.860 40.909 0.00 0.00 0.00 3.36
617 669 3.823281 TGTCTCACCACGTTTTTAGGA 57.177 42.857 0.00 0.00 0.00 2.94
618 670 6.148811 ACAATATGTCTCACCACGTTTTTAGG 59.851 38.462 0.00 0.00 0.00 2.69
619 671 7.015289 CACAATATGTCTCACCACGTTTTTAG 58.985 38.462 0.00 0.00 0.00 1.85
620 672 6.566942 GCACAATATGTCTCACCACGTTTTTA 60.567 38.462 0.00 0.00 0.00 1.52
621 673 5.757886 CACAATATGTCTCACCACGTTTTT 58.242 37.500 0.00 0.00 0.00 1.94
622 674 4.320202 GCACAATATGTCTCACCACGTTTT 60.320 41.667 0.00 0.00 0.00 2.43
623 675 3.188460 GCACAATATGTCTCACCACGTTT 59.812 43.478 0.00 0.00 0.00 3.60
624 676 2.742053 GCACAATATGTCTCACCACGTT 59.258 45.455 0.00 0.00 0.00 3.99
625 677 2.028112 AGCACAATATGTCTCACCACGT 60.028 45.455 0.00 0.00 0.00 4.49
626 678 2.621338 AGCACAATATGTCTCACCACG 58.379 47.619 0.00 0.00 0.00 4.94
627 679 6.371548 TCTTTTAGCACAATATGTCTCACCAC 59.628 38.462 0.00 0.00 0.00 4.16
628 680 6.472016 TCTTTTAGCACAATATGTCTCACCA 58.528 36.000 0.00 0.00 0.00 4.17
629 681 6.985188 TCTTTTAGCACAATATGTCTCACC 57.015 37.500 0.00 0.00 0.00 4.02
630 682 8.201554 TGATCTTTTAGCACAATATGTCTCAC 57.798 34.615 0.00 0.00 0.00 3.51
631 683 8.969260 ATGATCTTTTAGCACAATATGTCTCA 57.031 30.769 0.00 0.00 0.00 3.27
632 684 9.270640 AGATGATCTTTTAGCACAATATGTCTC 57.729 33.333 0.00 0.00 0.00 3.36
633 685 9.270640 GAGATGATCTTTTAGCACAATATGTCT 57.729 33.333 0.00 0.00 0.00 3.41
634 686 9.270640 AGAGATGATCTTTTAGCACAATATGTC 57.729 33.333 0.00 0.00 32.99 3.06
635 687 9.624373 AAGAGATGATCTTTTAGCACAATATGT 57.376 29.630 0.00 0.00 46.49 2.29
636 688 9.880064 CAAGAGATGATCTTTTAGCACAATATG 57.120 33.333 0.00 0.00 46.49 1.78
637 689 9.624373 ACAAGAGATGATCTTTTAGCACAATAT 57.376 29.630 0.00 0.00 46.49 1.28
638 690 9.102757 GACAAGAGATGATCTTTTAGCACAATA 57.897 33.333 0.00 0.00 46.49 1.90
639 691 7.828223 AGACAAGAGATGATCTTTTAGCACAAT 59.172 33.333 0.00 0.00 46.49 2.71
640 692 7.164122 AGACAAGAGATGATCTTTTAGCACAA 58.836 34.615 0.00 0.00 46.49 3.33
641 693 6.705302 AGACAAGAGATGATCTTTTAGCACA 58.295 36.000 0.00 0.00 46.49 4.57
642 694 7.548780 AGAAGACAAGAGATGATCTTTTAGCAC 59.451 37.037 0.00 0.00 46.49 4.40
643 695 7.619050 AGAAGACAAGAGATGATCTTTTAGCA 58.381 34.615 0.00 0.00 46.49 3.49
644 696 7.981225 AGAGAAGACAAGAGATGATCTTTTAGC 59.019 37.037 0.00 0.00 46.49 3.09
645 697 9.874205 AAGAGAAGACAAGAGATGATCTTTTAG 57.126 33.333 0.00 0.00 46.49 1.85
665 717 9.574516 AGGCTTGTCTTTTCTTATTTAAGAGAA 57.425 29.630 0.71 2.51 42.66 2.87
666 718 9.574516 AAGGCTTGTCTTTTCTTATTTAAGAGA 57.425 29.630 0.00 0.00 42.66 3.10
679 731 9.481340 GAATTCATAAGAAAAGGCTTGTCTTTT 57.519 29.630 31.76 23.28 46.07 2.27
680 732 8.864087 AGAATTCATAAGAAAAGGCTTGTCTTT 58.136 29.630 31.76 19.05 37.29 2.52
681 733 8.414629 AGAATTCATAAGAAAAGGCTTGTCTT 57.585 30.769 30.04 30.04 37.29 3.01
682 734 7.887495 AGAGAATTCATAAGAAAAGGCTTGTCT 59.113 33.333 14.33 14.33 37.29 3.41
683 735 8.049655 AGAGAATTCATAAGAAAAGGCTTGTC 57.950 34.615 9.51 9.51 37.29 3.18
684 736 7.887495 AGAGAGAATTCATAAGAAAAGGCTTGT 59.113 33.333 8.44 0.00 37.29 3.16
685 737 8.278729 AGAGAGAATTCATAAGAAAAGGCTTG 57.721 34.615 8.44 0.00 37.29 4.01
686 738 7.555914 GGAGAGAGAATTCATAAGAAAAGGCTT 59.444 37.037 8.44 0.00 37.29 4.35
687 739 7.053498 GGAGAGAGAATTCATAAGAAAAGGCT 58.947 38.462 8.44 0.00 37.29 4.58
688 740 7.053498 AGGAGAGAGAATTCATAAGAAAAGGC 58.947 38.462 8.44 0.00 37.29 4.35
689 741 7.714813 GGAGGAGAGAGAATTCATAAGAAAAGG 59.285 40.741 8.44 0.00 37.29 3.11
690 742 8.263640 TGGAGGAGAGAGAATTCATAAGAAAAG 58.736 37.037 8.44 0.00 37.29 2.27
691 743 8.043710 GTGGAGGAGAGAGAATTCATAAGAAAA 58.956 37.037 8.44 0.00 37.29 2.29
692 744 7.180946 TGTGGAGGAGAGAGAATTCATAAGAAA 59.819 37.037 8.44 0.00 37.29 2.52
693 745 6.669591 TGTGGAGGAGAGAGAATTCATAAGAA 59.330 38.462 8.44 0.00 38.31 2.52
694 746 6.197903 TGTGGAGGAGAGAGAATTCATAAGA 58.802 40.000 8.44 0.00 0.00 2.10
695 747 6.477053 TGTGGAGGAGAGAGAATTCATAAG 57.523 41.667 8.44 0.00 0.00 1.73
696 748 6.612863 TGATGTGGAGGAGAGAGAATTCATAA 59.387 38.462 8.44 0.00 0.00 1.90
697 749 6.138967 TGATGTGGAGGAGAGAGAATTCATA 58.861 40.000 8.44 0.00 0.00 2.15
698 750 4.967442 TGATGTGGAGGAGAGAGAATTCAT 59.033 41.667 8.44 0.00 0.00 2.57
699 751 4.356436 TGATGTGGAGGAGAGAGAATTCA 58.644 43.478 8.44 0.00 0.00 2.57
700 752 5.070180 TGATGATGTGGAGGAGAGAGAATTC 59.930 44.000 0.00 0.00 0.00 2.17
701 753 4.967442 TGATGATGTGGAGGAGAGAGAATT 59.033 41.667 0.00 0.00 0.00 2.17
702 754 4.554683 TGATGATGTGGAGGAGAGAGAAT 58.445 43.478 0.00 0.00 0.00 2.40
703 755 3.986435 TGATGATGTGGAGGAGAGAGAA 58.014 45.455 0.00 0.00 0.00 2.87
704 756 3.677156 TGATGATGTGGAGGAGAGAGA 57.323 47.619 0.00 0.00 0.00 3.10
705 757 4.959560 AATGATGATGTGGAGGAGAGAG 57.040 45.455 0.00 0.00 0.00 3.20
706 758 6.013898 GGATAAATGATGATGTGGAGGAGAGA 60.014 42.308 0.00 0.00 0.00 3.10
707 759 6.013553 AGGATAAATGATGATGTGGAGGAGAG 60.014 42.308 0.00 0.00 0.00 3.20
708 760 5.848369 AGGATAAATGATGATGTGGAGGAGA 59.152 40.000 0.00 0.00 0.00 3.71
709 761 6.124316 AGGATAAATGATGATGTGGAGGAG 57.876 41.667 0.00 0.00 0.00 3.69
710 762 6.295292 CGTAGGATAAATGATGATGTGGAGGA 60.295 42.308 0.00 0.00 0.00 3.71
711 763 5.871524 CGTAGGATAAATGATGATGTGGAGG 59.128 44.000 0.00 0.00 0.00 4.30
712 764 6.367149 CACGTAGGATAAATGATGATGTGGAG 59.633 42.308 0.00 0.00 0.00 3.86
713 765 6.223120 CACGTAGGATAAATGATGATGTGGA 58.777 40.000 0.00 0.00 0.00 4.02
714 766 5.409520 CCACGTAGGATAAATGATGATGTGG 59.590 44.000 0.00 0.00 41.22 4.17
715 767 5.106948 GCCACGTAGGATAAATGATGATGTG 60.107 44.000 8.04 0.00 41.22 3.21
716 768 4.997395 GCCACGTAGGATAAATGATGATGT 59.003 41.667 8.04 0.00 41.22 3.06
717 769 4.996758 TGCCACGTAGGATAAATGATGATG 59.003 41.667 8.04 0.00 41.22 3.07
718 770 5.227569 TGCCACGTAGGATAAATGATGAT 57.772 39.130 8.04 0.00 41.22 2.45
719 771 4.681074 TGCCACGTAGGATAAATGATGA 57.319 40.909 8.04 0.00 41.22 2.92
720 772 5.692814 CAATGCCACGTAGGATAAATGATG 58.307 41.667 8.04 0.00 41.22 3.07
721 773 4.216257 GCAATGCCACGTAGGATAAATGAT 59.784 41.667 8.04 0.00 41.22 2.45
722 774 3.563808 GCAATGCCACGTAGGATAAATGA 59.436 43.478 8.04 0.00 41.22 2.57
723 775 3.565482 AGCAATGCCACGTAGGATAAATG 59.435 43.478 0.00 0.00 41.22 2.32
724 776 3.820557 AGCAATGCCACGTAGGATAAAT 58.179 40.909 0.00 0.00 41.22 1.40
725 777 3.275617 AGCAATGCCACGTAGGATAAA 57.724 42.857 0.00 0.00 41.22 1.40
726 778 4.100344 TCTTAGCAATGCCACGTAGGATAA 59.900 41.667 0.00 0.00 41.22 1.75
727 779 3.639561 TCTTAGCAATGCCACGTAGGATA 59.360 43.478 0.00 0.00 41.22 2.59
728 780 2.434336 TCTTAGCAATGCCACGTAGGAT 59.566 45.455 0.00 0.00 41.22 3.24
729 781 1.828595 TCTTAGCAATGCCACGTAGGA 59.171 47.619 0.00 0.00 41.22 2.94
730 782 2.309528 TCTTAGCAATGCCACGTAGG 57.690 50.000 0.00 0.00 41.84 3.18
731 783 4.871513 TCTATCTTAGCAATGCCACGTAG 58.128 43.478 0.00 0.00 0.00 3.51
732 784 4.929819 TCTATCTTAGCAATGCCACGTA 57.070 40.909 0.00 0.00 0.00 3.57
733 785 3.819564 TCTATCTTAGCAATGCCACGT 57.180 42.857 0.00 0.00 0.00 4.49
734 786 3.248602 GGTTCTATCTTAGCAATGCCACG 59.751 47.826 0.00 0.00 0.00 4.94
735 787 4.199310 TGGTTCTATCTTAGCAATGCCAC 58.801 43.478 0.00 0.00 0.00 5.01
736 788 4.502105 TGGTTCTATCTTAGCAATGCCA 57.498 40.909 0.00 0.00 0.00 4.92
737 789 5.300286 ACAATGGTTCTATCTTAGCAATGCC 59.700 40.000 0.00 0.00 0.00 4.40
738 790 6.382869 ACAATGGTTCTATCTTAGCAATGC 57.617 37.500 0.00 0.00 0.00 3.56
739 791 8.437360 TGTACAATGGTTCTATCTTAGCAATG 57.563 34.615 0.00 0.00 0.00 2.82
740 792 9.060347 CATGTACAATGGTTCTATCTTAGCAAT 57.940 33.333 0.00 0.00 0.00 3.56
741 793 8.046708 ACATGTACAATGGTTCTATCTTAGCAA 58.953 33.333 0.00 0.00 0.00 3.91
742 794 7.564793 ACATGTACAATGGTTCTATCTTAGCA 58.435 34.615 0.00 0.00 0.00 3.49
743 795 7.171678 GGACATGTACAATGGTTCTATCTTAGC 59.828 40.741 2.19 0.00 0.00 3.09
744 796 8.424918 AGGACATGTACAATGGTTCTATCTTAG 58.575 37.037 11.55 0.00 0.00 2.18
745 797 8.319057 AGGACATGTACAATGGTTCTATCTTA 57.681 34.615 11.55 0.00 0.00 2.10
746 798 7.200434 AGGACATGTACAATGGTTCTATCTT 57.800 36.000 11.55 0.00 0.00 2.40
747 799 6.814954 AGGACATGTACAATGGTTCTATCT 57.185 37.500 11.55 0.00 0.00 1.98
748 800 8.204836 ACTAAGGACATGTACAATGGTTCTATC 58.795 37.037 11.55 0.00 0.00 2.08
749 801 8.090788 ACTAAGGACATGTACAATGGTTCTAT 57.909 34.615 11.55 0.00 0.00 1.98
750 802 7.490657 ACTAAGGACATGTACAATGGTTCTA 57.509 36.000 11.55 0.00 0.00 2.10
751 803 6.374417 ACTAAGGACATGTACAATGGTTCT 57.626 37.500 11.55 0.00 0.00 3.01
752 804 7.328737 AGTACTAAGGACATGTACAATGGTTC 58.671 38.462 11.55 5.03 39.02 3.62
753 805 7.253905 AGTACTAAGGACATGTACAATGGTT 57.746 36.000 11.55 0.00 39.02 3.67
754 806 6.869206 AGTACTAAGGACATGTACAATGGT 57.131 37.500 11.55 9.29 39.02 3.55
755 807 6.916387 CGTAGTACTAAGGACATGTACAATGG 59.084 42.308 11.55 3.24 39.02 3.16
756 808 6.417044 GCGTAGTACTAAGGACATGTACAATG 59.583 42.308 11.55 1.74 39.02 2.82
757 809 6.460676 GGCGTAGTACTAAGGACATGTACAAT 60.461 42.308 11.55 0.82 39.02 2.71
758 810 5.163622 GGCGTAGTACTAAGGACATGTACAA 60.164 44.000 11.55 0.00 39.02 2.41
759 811 4.336433 GGCGTAGTACTAAGGACATGTACA 59.664 45.833 11.55 0.00 39.02 2.90
760 812 4.553547 CGGCGTAGTACTAAGGACATGTAC 60.554 50.000 16.18 0.00 37.42 2.90
761 813 3.561310 CGGCGTAGTACTAAGGACATGTA 59.439 47.826 16.18 0.00 0.00 2.29
762 814 2.357009 CGGCGTAGTACTAAGGACATGT 59.643 50.000 16.18 0.00 0.00 3.21
763 815 2.857489 GCGGCGTAGTACTAAGGACATG 60.857 54.545 16.18 0.00 0.00 3.21
764 816 1.336125 GCGGCGTAGTACTAAGGACAT 59.664 52.381 16.18 0.00 0.00 3.06
765 817 0.734889 GCGGCGTAGTACTAAGGACA 59.265 55.000 16.18 0.00 0.00 4.02
766 818 0.316524 CGCGGCGTAGTACTAAGGAC 60.317 60.000 15.36 7.79 0.00 3.85
767 819 0.744414 ACGCGGCGTAGTACTAAGGA 60.744 55.000 28.37 0.00 38.73 3.36
768 820 0.316524 GACGCGGCGTAGTACTAAGG 60.317 60.000 29.49 7.71 41.37 2.69
769 821 0.652751 CGACGCGGCGTAGTACTAAG 60.653 60.000 29.55 11.06 41.37 2.18
819 871 5.126545 TGGCTGAAAGATGGATCAATCAAAG 59.873 40.000 12.74 5.20 34.07 2.77
845 903 1.801913 GTGTAGCGAGACGTGGCTG 60.802 63.158 13.80 0.00 38.38 4.85
855 913 1.674441 CTCGGGTCTTATGTGTAGCGA 59.326 52.381 0.00 0.00 0.00 4.93
858 916 4.035792 CACTCTCTCGGGTCTTATGTGTAG 59.964 50.000 0.00 0.00 0.00 2.74
879 937 0.515564 CCCGTTTCGGTGTCAATCAC 59.484 55.000 7.40 0.00 46.80 3.06
898 956 8.381786 AATGGAATTATGGGACGCAGTTAGTAC 61.382 40.741 0.00 0.00 35.52 2.73
899 957 6.408776 AATGGAATTATGGGACGCAGTTAGTA 60.409 38.462 0.00 0.00 35.52 1.82
918 985 0.755686 GGGTGTTGTTGGCAATGGAA 59.244 50.000 1.92 0.00 36.92 3.53
919 986 0.397675 TGGGTGTTGTTGGCAATGGA 60.398 50.000 1.92 0.00 36.92 3.41
925 992 2.517402 TCGGTGGGTGTTGTTGGC 60.517 61.111 0.00 0.00 0.00 4.52
1248 1324 0.388263 GTCTGGACGGAGGAACGAAC 60.388 60.000 0.00 0.00 37.61 3.95
1256 1332 0.388649 CGGTTCTTGTCTGGACGGAG 60.389 60.000 0.00 0.00 0.00 4.63
1258 1334 2.027625 GCGGTTCTTGTCTGGACGG 61.028 63.158 0.00 0.00 0.00 4.79
1259 1335 2.027625 GGCGGTTCTTGTCTGGACG 61.028 63.158 0.00 0.00 0.00 4.79
1260 1336 2.027625 CGGCGGTTCTTGTCTGGAC 61.028 63.158 0.00 0.00 0.00 4.02
1261 1337 2.342279 CGGCGGTTCTTGTCTGGA 59.658 61.111 0.00 0.00 0.00 3.86
1262 1338 3.423154 GCGGCGGTTCTTGTCTGG 61.423 66.667 9.78 0.00 0.00 3.86
1304 1380 2.543687 AAGCGCGTACGTCAGCATCT 62.544 55.000 25.39 12.59 42.83 2.90
1315 1391 1.346197 CTACGACGAGAAGCGCGTA 59.654 57.895 8.43 0.00 45.60 4.42
1353 1442 0.391793 GGTGAGCCAGGAGTAGTTGC 60.392 60.000 0.00 0.00 34.09 4.17
1480 1569 3.078196 TGGGCGGCGATGGTAAGA 61.078 61.111 12.98 0.00 0.00 2.10
1481 1570 2.023414 TAGTGGGCGGCGATGGTAAG 62.023 60.000 12.98 0.00 0.00 2.34
1482 1571 2.023414 CTAGTGGGCGGCGATGGTAA 62.023 60.000 12.98 0.00 0.00 2.85
1483 1572 2.442458 TAGTGGGCGGCGATGGTA 60.442 61.111 12.98 0.00 0.00 3.25
1484 1573 3.849951 CTAGTGGGCGGCGATGGT 61.850 66.667 12.98 0.00 0.00 3.55
1486 1575 1.299926 GTACTAGTGGGCGGCGATG 60.300 63.158 12.98 0.00 0.00 3.84
1487 1576 1.453762 GAGTACTAGTGGGCGGCGAT 61.454 60.000 12.98 0.00 0.00 4.58
1488 1577 2.044650 AGTACTAGTGGGCGGCGA 60.045 61.111 12.98 0.00 0.00 5.54
1490 1579 1.321074 ACAGAGTACTAGTGGGCGGC 61.321 60.000 5.39 0.00 0.00 6.53
1523 1633 4.452733 GTTGGGGCGGACGGAGAG 62.453 72.222 0.00 0.00 0.00 3.20
1650 1767 0.394352 ATGGGGTTGCGGTGAGATTC 60.394 55.000 0.00 0.00 0.00 2.52
1665 1782 9.413734 AGGTAAAAAGATGAGATAGAAAATGGG 57.586 33.333 0.00 0.00 0.00 4.00
1756 1876 8.575589 CATCTAATCTGCACTGAGTCTAGTAAT 58.424 37.037 0.00 0.00 0.00 1.89
1757 1877 7.558081 ACATCTAATCTGCACTGAGTCTAGTAA 59.442 37.037 0.00 0.00 0.00 2.24
1758 1878 7.057264 ACATCTAATCTGCACTGAGTCTAGTA 58.943 38.462 0.00 0.00 0.00 1.82
1804 1930 4.293415 GCATTTTGGCATAGCTATGTGTC 58.707 43.478 29.62 20.65 36.11 3.67
1834 1960 1.144708 TGGATCAGTGAACAAGGGCAA 59.855 47.619 0.00 0.00 0.00 4.52
1904 2031 6.257849 TCGGTACATAACTGCAAGATTGAATC 59.742 38.462 0.00 0.00 37.43 2.52
1910 2037 3.741388 GCCTCGGTACATAACTGCAAGAT 60.741 47.826 0.00 0.00 37.43 2.40
1966 2093 7.227512 CCCATCACCAGTAGAGAAATGAAATAC 59.772 40.741 0.00 0.00 0.00 1.89
1967 2094 7.092444 ACCCATCACCAGTAGAGAAATGAAATA 60.092 37.037 0.00 0.00 0.00 1.40
2110 2237 0.826256 AAAGGGAAAAGGTCGGGCAC 60.826 55.000 0.00 0.00 0.00 5.01
2149 2276 2.098117 GCAGCAAGCTTTCGTGGATATT 59.902 45.455 0.00 0.00 41.15 1.28
2151 2278 1.086696 GCAGCAAGCTTTCGTGGATA 58.913 50.000 0.00 0.00 41.15 2.59
2217 2344 2.481952 CAGAAAACAGTGGAGCAGTAGC 59.518 50.000 0.00 0.00 42.56 3.58
2231 2358 5.592054 CAAGGGAAAAAGAGGACAGAAAAC 58.408 41.667 0.00 0.00 0.00 2.43
2243 2370 6.493449 TTCAAACAAAAGCAAGGGAAAAAG 57.507 33.333 0.00 0.00 0.00 2.27
2248 2375 5.350504 TGAATTCAAACAAAAGCAAGGGA 57.649 34.783 5.45 0.00 0.00 4.20
2281 2408 3.303938 TGGAAAAGGAAAACAGATGCCA 58.696 40.909 0.00 0.00 0.00 4.92
2427 2573 6.383726 ACTCTCTCTCTTTTCCATGCTCTATT 59.616 38.462 0.00 0.00 0.00 1.73
2443 2589 9.577222 AACTATTTATACCTGGTACTCTCTCTC 57.423 37.037 9.09 0.00 0.00 3.20
2593 2756 3.265737 TGGTGGCATCAGTTGTACCTAAT 59.734 43.478 0.00 0.00 36.35 1.73
2610 2773 3.423539 TCTTCAGATTTGAGGTGGTGG 57.576 47.619 0.00 0.00 34.15 4.61
2669 2832 5.525378 GGCCATACTTACAAGAATCTCTGTG 59.475 44.000 0.00 0.00 0.00 3.66
2670 2833 5.189736 TGGCCATACTTACAAGAATCTCTGT 59.810 40.000 0.00 4.17 0.00 3.41
2722 2887 2.874648 CTAGCCAGCCACCGCATGAA 62.875 60.000 0.00 0.00 37.52 2.57
2827 2992 9.250624 GCATCTTTATTCTACTACTCGTGAAAT 57.749 33.333 0.00 0.00 0.00 2.17
2833 3002 8.747666 GTTTCAGCATCTTTATTCTACTACTCG 58.252 37.037 0.00 0.00 0.00 4.18
2834 3003 9.036671 GGTTTCAGCATCTTTATTCTACTACTC 57.963 37.037 0.00 0.00 0.00 2.59
2854 3023 1.140852 CACCAGTGTCTGAGGGTTTCA 59.859 52.381 0.00 0.00 32.44 2.69
2905 3076 5.460646 ACAAATGAACCAAGTCTAATTGCG 58.539 37.500 0.00 0.00 0.00 4.85
2946 3118 0.981183 TGAGCACCGAACCACCTAAT 59.019 50.000 0.00 0.00 0.00 1.73
2966 3335 7.385752 TCAAGAATCCTTTCATTTTCAATGCAC 59.614 33.333 0.00 0.00 34.08 4.57
2975 3344 9.924650 CTTCAAGAATCAAGAATCCTTTCATTT 57.075 29.630 0.00 0.00 34.08 2.32
2978 3347 7.175641 GGACTTCAAGAATCAAGAATCCTTTCA 59.824 37.037 0.00 0.00 34.08 2.69
2979 3348 7.362487 GGGACTTCAAGAATCAAGAATCCTTTC 60.362 40.741 0.00 0.00 0.00 2.62
2980 3349 6.435591 GGGACTTCAAGAATCAAGAATCCTTT 59.564 38.462 0.00 0.00 0.00 3.11
2983 3352 5.356470 CAGGGACTTCAAGAATCAAGAATCC 59.644 44.000 0.00 0.00 34.60 3.01
2984 3353 6.176183 TCAGGGACTTCAAGAATCAAGAATC 58.824 40.000 0.00 0.00 34.60 2.52
2985 3354 6.131972 TCAGGGACTTCAAGAATCAAGAAT 57.868 37.500 0.00 0.00 34.60 2.40
2986 3355 5.567037 TCAGGGACTTCAAGAATCAAGAA 57.433 39.130 0.00 0.00 34.60 2.52
2987 3356 5.768980 ATCAGGGACTTCAAGAATCAAGA 57.231 39.130 0.00 0.00 34.60 3.02
2988 3357 5.392811 GCAATCAGGGACTTCAAGAATCAAG 60.393 44.000 0.00 0.00 34.60 3.02
2989 3358 4.460382 GCAATCAGGGACTTCAAGAATCAA 59.540 41.667 0.00 0.00 34.60 2.57
2990 3359 4.012374 GCAATCAGGGACTTCAAGAATCA 58.988 43.478 0.00 0.00 34.60 2.57
3013 3382 4.582701 TGATTACAACAAGGCCTGTTTG 57.417 40.909 20.32 20.32 46.49 2.93
3019 3388 5.186198 ACTAGACATGATTACAACAAGGCC 58.814 41.667 0.00 0.00 0.00 5.19
3057 3427 2.102925 CCAAAGCAATCAACACCTTGGT 59.897 45.455 0.00 0.00 34.76 3.67
3059 3429 3.068590 AGACCAAAGCAATCAACACCTTG 59.931 43.478 0.00 0.00 0.00 3.61
3067 3437 5.243730 CCTTTCCTTAAGACCAAAGCAATCA 59.756 40.000 3.36 0.00 35.80 2.57
3143 3513 6.226787 AGGTCTACTTTCAGAACATTGACTG 58.773 40.000 8.48 8.48 34.49 3.51
3144 3514 6.426646 AGGTCTACTTTCAGAACATTGACT 57.573 37.500 0.00 0.00 34.49 3.41
3145 3515 7.497925 AAAGGTCTACTTTCAGAACATTGAC 57.502 36.000 0.00 0.00 46.20 3.18
3182 3555 5.532406 ACACAAACACTGCATTGTAAGATCT 59.468 36.000 10.40 0.00 37.66 2.75
3183 3556 5.762045 ACACAAACACTGCATTGTAAGATC 58.238 37.500 10.40 0.00 37.66 2.75
3194 3567 3.715628 ATTCTCCAACACAAACACTGC 57.284 42.857 0.00 0.00 0.00 4.40
3202 3575 3.070446 ACGTACTCCAATTCTCCAACACA 59.930 43.478 0.00 0.00 0.00 3.72
3235 3608 6.204882 ACTTGTGAAGTGTGGCTAGAAATAAC 59.795 38.462 0.00 0.00 41.01 1.89
3244 3617 2.550830 CCTACTTGTGAAGTGTGGCT 57.449 50.000 0.00 0.00 42.84 4.75
3250 3623 5.470098 CACAATGTTAGCCTACTTGTGAAGT 59.530 40.000 12.39 0.00 45.93 3.01
3273 3646 5.105554 ACTGGTTTGTTTCATAACTGCAACA 60.106 36.000 0.00 0.00 36.85 3.33
3292 3665 5.013183 AGCAGAATACTTTAGGAACACTGGT 59.987 40.000 0.00 0.00 0.00 4.00
3425 3799 2.822561 TGTCTGCACACCAACAGAAAAA 59.177 40.909 0.00 0.00 44.14 1.94
3445 3819 8.663771 GCATTTTGCAGAAGGAAATTAAAATG 57.336 30.769 5.74 6.74 44.26 2.32
3714 4150 7.062605 GCATGAAAAGTGTTCAACTAATGATGG 59.937 37.037 0.00 0.00 38.56 3.51
3718 4154 6.919662 ACAGCATGAAAAGTGTTCAACTAATG 59.080 34.615 0.00 0.00 36.52 1.90
3721 4157 5.277297 CGACAGCATGAAAAGTGTTCAACTA 60.277 40.000 0.00 0.00 36.52 2.24
3729 4165 2.802247 TCTGACGACAGCATGAAAAGTG 59.198 45.455 10.15 0.00 43.17 3.16
3735 4171 0.533951 ATGCTCTGACGACAGCATGA 59.466 50.000 12.36 0.00 44.99 3.07
3780 4216 3.544615 GTTGCTGAACGGAACCAAC 57.455 52.632 0.00 0.00 37.93 3.77
3785 4221 1.896660 GGCAGGTTGCTGAACGGAA 60.897 57.895 0.67 0.00 44.28 4.30
3788 4224 1.236616 TGATGGCAGGTTGCTGAACG 61.237 55.000 0.00 0.00 44.28 3.95
4149 4585 0.320334 TCAACAGAGAATGGCGCGAA 60.320 50.000 12.10 0.00 0.00 4.70
4150 4586 0.108186 ATCAACAGAGAATGGCGCGA 60.108 50.000 12.10 0.00 0.00 5.87
4151 4587 1.570813 TATCAACAGAGAATGGCGCG 58.429 50.000 0.00 0.00 0.00 6.86
4152 4588 2.874701 ACATATCAACAGAGAATGGCGC 59.125 45.455 0.00 0.00 0.00 6.53
4153 4589 5.490139 AAACATATCAACAGAGAATGGCG 57.510 39.130 0.00 0.00 0.00 5.69
4154 4590 6.035327 GCAAAAACATATCAACAGAGAATGGC 59.965 38.462 0.00 0.00 0.00 4.40
4162 4602 7.754924 ACGGATAAAGCAAAAACATATCAACAG 59.245 33.333 0.00 0.00 0.00 3.16
4235 4675 4.181010 CCATGGCAGGGGACTCCG 62.181 72.222 11.07 0.00 40.21 4.63
4236 4676 1.649271 AATCCATGGCAGGGGACTCC 61.649 60.000 19.39 0.00 40.21 3.85
4333 4773 2.276732 AGCATGCTAACAAGTGGTGT 57.723 45.000 21.21 0.00 44.64 4.16
4441 4881 8.260550 CGACGACTAAATAAGCTTCATTTAGAC 58.739 37.037 30.19 26.22 43.82 2.59
4475 4915 7.821652 TGCGTGATTCAAATTATAAGAAACCA 58.178 30.769 0.00 0.00 0.00 3.67
4486 4926 2.421424 GCTCCTCTGCGTGATTCAAATT 59.579 45.455 0.00 0.00 0.00 1.82
4555 4995 4.498850 GCAATGTTGTCACAACCACATACA 60.499 41.667 18.17 0.00 39.99 2.29
4564 5004 3.963665 GCAGTAAGCAATGTTGTCACAA 58.036 40.909 0.00 0.00 44.79 3.33
4617 5057 4.019591 GGTGGTAGGAAATGTAACAGGACT 60.020 45.833 0.00 0.00 0.00 3.85
4632 5072 5.189934 AGGAGATCAAAAAGTAGGTGGTAGG 59.810 44.000 0.00 0.00 0.00 3.18
4708 5199 3.324117 CTCAGTCAGAGGTCACAACATG 58.676 50.000 0.00 0.00 40.84 3.21
4801 5292 0.673644 CTGGGCTCGTACCACCTTTG 60.674 60.000 0.00 0.00 33.63 2.77
4802 5293 1.677552 CTGGGCTCGTACCACCTTT 59.322 57.895 0.00 0.00 33.63 3.11
4803 5294 2.291043 CCTGGGCTCGTACCACCTT 61.291 63.158 0.00 0.00 33.63 3.50
4804 5295 2.683933 CCTGGGCTCGTACCACCT 60.684 66.667 0.00 0.00 33.63 4.00
4805 5296 4.468689 GCCTGGGCTCGTACCACC 62.469 72.222 4.12 0.00 38.26 4.61
4806 5297 4.814294 CGCCTGGGCTCGTACCAC 62.814 72.222 10.04 0.00 39.32 4.16
4863 5354 2.125350 CGAGGAAGCAGCTCCACC 60.125 66.667 11.98 8.79 38.02 4.61
4912 5403 0.952497 CTGAAGCAGAGCGCCTTCAA 60.952 55.000 21.76 10.38 44.04 2.69
4914 5405 0.952984 AACTGAAGCAGAGCGCCTTC 60.953 55.000 14.81 14.81 44.04 3.46
4916 5407 0.108424 CTAACTGAAGCAGAGCGCCT 60.108 55.000 2.29 0.00 44.04 5.52
4945 5436 1.975407 CAGAAGCAGCACAAGGGGG 60.975 63.158 0.00 0.00 0.00 5.40
4947 5438 2.633509 GGCAGAAGCAGCACAAGGG 61.634 63.158 0.00 0.00 44.61 3.95
4948 5439 1.248785 ATGGCAGAAGCAGCACAAGG 61.249 55.000 0.00 0.00 44.61 3.61
4980 5471 7.973944 ACCAACAAATGAAACTGAAGTAGAAAC 59.026 33.333 0.00 0.00 0.00 2.78
5324 6262 8.713271 CCTCTTCCGTCTCAAAATATATTAAGC 58.287 37.037 0.00 0.00 0.00 3.09
5328 6266 8.925338 ACTACCTCTTCCGTCTCAAAATATATT 58.075 33.333 0.00 0.00 0.00 1.28
5329 6267 8.480133 ACTACCTCTTCCGTCTCAAAATATAT 57.520 34.615 0.00 0.00 0.00 0.86
5359 6297 4.695928 CAGCACTCATTCAGATCCATATGG 59.304 45.833 16.25 16.25 0.00 2.74
5389 6331 0.692419 TCATGGGCCCTCCTCTCTTC 60.692 60.000 25.70 0.00 36.20 2.87
5413 6355 2.745492 GTCAGTCAGCCAGCCAGC 60.745 66.667 0.00 0.00 0.00 4.85
5417 6359 0.669932 CAGTCAGTCAGTCAGCCAGC 60.670 60.000 0.00 0.00 0.00 4.85
5421 6363 1.336702 CCTGTCAGTCAGTCAGTCAGC 60.337 57.143 0.00 0.00 42.19 4.26
5422 6364 1.959985 ACCTGTCAGTCAGTCAGTCAG 59.040 52.381 0.00 0.00 42.19 3.51
5474 6416 3.428999 GCATGATGCTGTCTGCTTGATTT 60.429 43.478 10.72 0.00 40.96 2.17
5525 6469 9.252962 GAAATTAATCAATCAATCCCATGTGAC 57.747 33.333 0.00 0.00 0.00 3.67
5555 6499 7.362401 GCATGGTTTCTTGTGTGAGAATAGATT 60.362 37.037 0.00 0.00 35.70 2.40
5558 6502 5.392380 GGCATGGTTTCTTGTGTGAGAATAG 60.392 44.000 0.00 0.00 35.70 1.73
5560 6504 3.256631 GGCATGGTTTCTTGTGTGAGAAT 59.743 43.478 0.00 0.00 35.70 2.40
5562 6506 2.229792 GGCATGGTTTCTTGTGTGAGA 58.770 47.619 0.00 0.00 0.00 3.27
5563 6507 1.270550 GGGCATGGTTTCTTGTGTGAG 59.729 52.381 0.00 0.00 0.00 3.51
5564 6508 1.327303 GGGCATGGTTTCTTGTGTGA 58.673 50.000 0.00 0.00 0.00 3.58
5566 6510 1.039856 GTGGGCATGGTTTCTTGTGT 58.960 50.000 0.00 0.00 0.00 3.72
5567 6511 1.331214 AGTGGGCATGGTTTCTTGTG 58.669 50.000 0.00 0.00 0.00 3.33
5568 6512 2.086610 AAGTGGGCATGGTTTCTTGT 57.913 45.000 0.00 0.00 0.00 3.16
5569 6513 3.157087 AGTAAGTGGGCATGGTTTCTTG 58.843 45.455 0.00 0.00 0.00 3.02
5570 6514 3.074538 AGAGTAAGTGGGCATGGTTTCTT 59.925 43.478 0.00 0.00 0.00 2.52
5572 6516 3.073274 AGAGTAAGTGGGCATGGTTTC 57.927 47.619 0.00 0.00 0.00 2.78
5573 6517 3.525800 AAGAGTAAGTGGGCATGGTTT 57.474 42.857 0.00 0.00 0.00 3.27
5577 6521 4.503991 GGAGGATAAGAGTAAGTGGGCATG 60.504 50.000 0.00 0.00 0.00 4.06
5587 6531 5.155905 GGGATTTCCTGGAGGATAAGAGTA 58.844 45.833 0.00 0.00 44.98 2.59
5588 6532 3.977326 GGGATTTCCTGGAGGATAAGAGT 59.023 47.826 0.00 0.00 44.98 3.24
5589 6533 3.976654 TGGGATTTCCTGGAGGATAAGAG 59.023 47.826 0.00 0.00 44.98 2.85
5590 6534 3.976654 CTGGGATTTCCTGGAGGATAAGA 59.023 47.826 0.00 0.00 44.98 2.10
5591 6535 4.363991 CTGGGATTTCCTGGAGGATAAG 57.636 50.000 0.00 0.00 44.98 1.73
5601 6545 1.279271 CACGAGAACCTGGGATTTCCT 59.721 52.381 0.00 0.00 36.20 3.36
5602 6546 1.679032 CCACGAGAACCTGGGATTTCC 60.679 57.143 0.00 0.00 0.00 3.13
5611 6555 5.421056 TGATCAGTAATAACCACGAGAACCT 59.579 40.000 0.00 0.00 0.00 3.50
5613 6557 7.168302 CAGATGATCAGTAATAACCACGAGAAC 59.832 40.741 0.09 0.00 0.00 3.01
5616 6560 5.923114 CCAGATGATCAGTAATAACCACGAG 59.077 44.000 0.09 0.00 0.00 4.18
5617 6561 5.362717 ACCAGATGATCAGTAATAACCACGA 59.637 40.000 0.09 0.00 0.00 4.35
5620 6564 6.611236 TCAGACCAGATGATCAGTAATAACCA 59.389 38.462 0.09 0.00 0.00 3.67
5621 6565 7.014711 TCTCAGACCAGATGATCAGTAATAACC 59.985 40.741 0.09 0.00 0.00 2.85
5623 6567 8.718158 ATCTCAGACCAGATGATCAGTAATAA 57.282 34.615 0.09 0.00 31.48 1.40
5713 6658 4.099633 TGGGAGGGAATATATGCTCTCAG 58.900 47.826 20.46 0.00 0.00 3.35
5751 6696 3.845775 CACGTTCACGATGCCAATAAAAG 59.154 43.478 6.30 0.00 43.02 2.27
5797 6742 6.084277 GGAAGAATACCAGCAAAAAGTAACG 58.916 40.000 0.00 0.00 0.00 3.18
5812 6757 3.247006 TCCTTGACGCTGGAAGAATAC 57.753 47.619 0.00 0.00 34.07 1.89
5890 6840 6.832520 TTGTCTATCTGGCAAAATGCTTAA 57.167 33.333 2.00 0.00 44.28 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.