Multiple sequence alignment - TraesCS7B01G226700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G226700 chr7B 100.000 4405 0 0 1 4405 427287838 427292242 0.000000e+00 8135.0
1 TraesCS7B01G226700 chr7B 92.955 582 40 1 4 584 179246150 179245569 0.000000e+00 846.0
2 TraesCS7B01G226700 chr7B 96.809 94 2 1 4025 4117 622831030 622831123 5.900000e-34 156.0
3 TraesCS7B01G226700 chr7B 93.137 102 5 1 4020 4119 8925167 8925268 9.870000e-32 148.0
4 TraesCS7B01G226700 chr7B 82.569 109 9 6 3914 4022 176738380 176738478 2.180000e-13 87.9
5 TraesCS7B01G226700 chr7B 81.818 110 10 4 3914 4023 286499593 286499692 2.820000e-12 84.2
6 TraesCS7B01G226700 chr7A 93.269 1753 74 24 2064 3803 474283133 474284854 0.000000e+00 2543.0
7 TraesCS7B01G226700 chr7A 95.036 685 24 5 887 1567 474281192 474281870 0.000000e+00 1068.0
8 TraesCS7B01G226700 chr7A 94.087 575 29 3 1 574 285571115 285570545 0.000000e+00 869.0
9 TraesCS7B01G226700 chr7A 94.828 464 18 1 1604 2061 474281965 474282428 0.000000e+00 719.0
10 TraesCS7B01G226700 chr7A 95.098 102 4 1 1467 1567 474281928 474282029 4.560000e-35 159.0
11 TraesCS7B01G226700 chr7A 77.961 304 27 11 4123 4399 474285068 474285358 2.120000e-33 154.0
12 TraesCS7B01G226700 chr7A 98.246 57 1 0 3824 3880 474284940 474284996 2.800000e-17 100.0
13 TraesCS7B01G226700 chr7D 91.367 1251 70 22 2687 3923 412873253 412874479 0.000000e+00 1677.0
14 TraesCS7B01G226700 chr7D 96.012 677 20 5 887 1559 412871413 412872086 0.000000e+00 1094.0
15 TraesCS7B01G226700 chr7D 97.162 458 13 0 1604 2061 412872178 412872635 0.000000e+00 774.0
16 TraesCS7B01G226700 chr7D 95.468 331 12 2 2360 2687 412872872 412873202 3.900000e-145 525.0
17 TraesCS7B01G226700 chr7D 82.162 370 25 16 4044 4399 412874489 412874831 3.350000e-71 279.0
18 TraesCS7B01G226700 chr7D 93.548 62 4 0 1604 1665 412872030 412872091 4.690000e-15 93.5
19 TraesCS7B01G226700 chr7D 82.569 109 9 4 3914 4022 615416760 615416662 2.180000e-13 87.9
20 TraesCS7B01G226700 chr7D 100.000 29 0 0 2659 2687 412873202 412873230 2.000000e-03 54.7
21 TraesCS7B01G226700 chr4B 93.919 592 29 7 1 588 377799250 377799838 0.000000e+00 887.0
22 TraesCS7B01G226700 chr4B 83.838 99 12 2 3927 4023 586903074 586903170 1.690000e-14 91.6
23 TraesCS7B01G226700 chr2D 93.697 587 32 5 4 587 520039724 520039140 0.000000e+00 874.0
24 TraesCS7B01G226700 chr2D 91.525 118 8 2 4000 4117 188886054 188886169 1.270000e-35 161.0
25 TraesCS7B01G226700 chr2D 88.393 112 9 4 4033 4142 411626357 411626248 9.940000e-27 132.0
26 TraesCS7B01G226700 chr2B 94.066 573 32 2 4 574 406114315 406113743 0.000000e+00 869.0
27 TraesCS7B01G226700 chr2B 94.306 562 30 2 4 563 158137813 158137252 0.000000e+00 859.0
28 TraesCS7B01G226700 chr2B 83.838 99 12 2 3927 4023 553847205 553847301 1.690000e-14 91.6
29 TraesCS7B01G226700 chr3B 93.576 576 35 2 1 574 829005438 829006013 0.000000e+00 857.0
30 TraesCS7B01G226700 chr3B 93.391 575 37 1 1 574 800070083 800070657 0.000000e+00 850.0
31 TraesCS7B01G226700 chr3B 92.796 583 40 2 6 587 35456529 35455948 0.000000e+00 843.0
32 TraesCS7B01G226700 chr3B 87.156 109 4 3 3914 4022 202387033 202387131 1.000000e-21 115.0
33 TraesCS7B01G226700 chr5A 90.741 162 14 1 1902 2063 463652164 463652324 9.600000e-52 215.0
34 TraesCS7B01G226700 chr5A 91.176 102 8 1 4029 4129 46707003 46707104 2.140000e-28 137.0
35 TraesCS7B01G226700 chr5A 94.937 79 4 0 2060 2138 463653015 463653093 1.660000e-24 124.0
36 TraesCS7B01G226700 chr3A 95.745 94 4 0 4025 4118 697619227 697619320 7.630000e-33 152.0
37 TraesCS7B01G226700 chr3A 90.476 105 10 0 4027 4131 403412175 403412071 5.940000e-29 139.0
38 TraesCS7B01G226700 chrUn 88.189 127 13 2 3992 4117 332204393 332204518 2.740000e-32 150.0
39 TraesCS7B01G226700 chrUn 88.189 127 13 2 3992 4117 332213849 332213724 2.740000e-32 150.0
40 TraesCS7B01G226700 chrUn 88.189 127 13 2 3992 4117 373754846 373754971 2.740000e-32 150.0
41 TraesCS7B01G226700 chrUn 83.495 103 13 3 3927 4028 38147124 38147223 4.690000e-15 93.5
42 TraesCS7B01G226700 chr4A 90.909 110 6 4 4026 4134 616405305 616405411 1.280000e-30 145.0
43 TraesCS7B01G226700 chr6D 90.090 111 9 2 4025 4134 206553860 206553969 4.590000e-30 143.0
44 TraesCS7B01G226700 chr4D 96.512 86 3 0 4032 4117 169119897 169119982 4.590000e-30 143.0
45 TraesCS7B01G226700 chr4D 81.818 110 10 6 3914 4023 461589819 461589720 2.820000e-12 84.2
46 TraesCS7B01G226700 chr6B 88.889 108 11 1 4029 4136 199740505 199740611 9.940000e-27 132.0
47 TraesCS7B01G226700 chr1A 86.290 124 11 6 4026 4149 395485019 395484902 3.580000e-26 130.0
48 TraesCS7B01G226700 chr5B 87.156 109 4 2 3914 4022 402870198 402870296 1.000000e-21 115.0
49 TraesCS7B01G226700 chr5B 85.455 110 6 2 3914 4023 331247235 331247334 6.030000e-19 106.0
50 TraesCS7B01G226700 chr5B 82.569 109 9 4 3914 4022 27354685 27354587 2.180000e-13 87.9
51 TraesCS7B01G226700 chr1B 82.569 109 9 7 3914 4022 204636843 204636941 2.180000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G226700 chr7B 427287838 427292242 4404 False 8135.000000 8135 100.000000 1 4405 1 chr7B.!!$F4 4404
1 TraesCS7B01G226700 chr7B 179245569 179246150 581 True 846.000000 846 92.955000 4 584 1 chr7B.!!$R1 580
2 TraesCS7B01G226700 chr7A 285570545 285571115 570 True 869.000000 869 94.087000 1 574 1 chr7A.!!$R1 573
3 TraesCS7B01G226700 chr7A 474281192 474285358 4166 False 790.500000 2543 92.406333 887 4399 6 chr7A.!!$F1 3512
4 TraesCS7B01G226700 chr7D 412871413 412874831 3418 False 642.457143 1677 93.674143 887 4399 7 chr7D.!!$F1 3512
5 TraesCS7B01G226700 chr4B 377799250 377799838 588 False 887.000000 887 93.919000 1 588 1 chr4B.!!$F1 587
6 TraesCS7B01G226700 chr2D 520039140 520039724 584 True 874.000000 874 93.697000 4 587 1 chr2D.!!$R2 583
7 TraesCS7B01G226700 chr2B 406113743 406114315 572 True 869.000000 869 94.066000 4 574 1 chr2B.!!$R2 570
8 TraesCS7B01G226700 chr2B 158137252 158137813 561 True 859.000000 859 94.306000 4 563 1 chr2B.!!$R1 559
9 TraesCS7B01G226700 chr3B 829005438 829006013 575 False 857.000000 857 93.576000 1 574 1 chr3B.!!$F3 573
10 TraesCS7B01G226700 chr3B 800070083 800070657 574 False 850.000000 850 93.391000 1 574 1 chr3B.!!$F2 573
11 TraesCS7B01G226700 chr3B 35455948 35456529 581 True 843.000000 843 92.796000 6 587 1 chr3B.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 881 0.961019 TTCAATCAAGTGTGCCAGGC 59.039 50.000 3.66 3.66 0.0 4.85 F
872 882 1.210931 CAATCAAGTGTGCCAGGCG 59.789 57.895 7.03 0.00 0.0 5.52 F
2488 3270 0.033504 TTTTCGAGCAGCTTCTCCGT 59.966 50.000 7.84 0.00 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2110 0.865111 TCCACGTCATGAGCAAAACG 59.135 50.0 0.00 0.00 40.77 3.60 R
2807 3643 1.172812 TCGGCCAGATCGACGATGAT 61.173 55.0 16.49 0.21 0.00 2.45 R
4249 5255 0.035439 TTCGCACCTTCCTTCCATCC 60.035 55.0 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 108 5.567423 GCAACTCTTCCTTTTACATGGCAAT 60.567 40.000 0.00 0.00 0.00 3.56
156 161 7.523380 GCAACTCTCTCAACTACCTAGTGTTAA 60.523 40.741 0.00 0.00 36.50 2.01
419 427 1.270412 TGTGGGCGTTATCAACTTCGT 60.270 47.619 0.00 0.00 0.00 3.85
450 458 1.817209 GTGTGAGAGGGATCGGGAC 59.183 63.158 0.00 0.00 0.00 4.46
551 561 1.550327 TGTGTGGGCAGACTCTCTAG 58.450 55.000 0.00 0.00 0.00 2.43
584 594 5.408356 GTGTGACACTTATTCACGTCCTAT 58.592 41.667 8.76 0.00 45.44 2.57
587 597 7.543172 GTGTGACACTTATTCACGTCCTATAAA 59.457 37.037 8.76 0.00 45.44 1.40
588 598 8.255206 TGTGACACTTATTCACGTCCTATAAAT 58.745 33.333 7.20 0.00 45.44 1.40
589 599 9.095065 GTGACACTTATTCACGTCCTATAAATT 57.905 33.333 0.00 0.00 34.41 1.82
590 600 9.661563 TGACACTTATTCACGTCCTATAAATTT 57.338 29.630 0.00 0.00 0.00 1.82
597 607 7.867305 TTCACGTCCTATAAATTTTATGGCA 57.133 32.000 11.16 0.00 0.00 4.92
598 608 8.458573 TTCACGTCCTATAAATTTTATGGCAT 57.541 30.769 4.88 4.88 0.00 4.40
599 609 9.562408 TTCACGTCCTATAAATTTTATGGCATA 57.438 29.630 11.16 2.32 0.00 3.14
600 610 8.995220 TCACGTCCTATAAATTTTATGGCATAC 58.005 33.333 6.72 6.43 0.00 2.39
601 611 8.779303 CACGTCCTATAAATTTTATGGCATACA 58.221 33.333 6.72 0.00 0.00 2.29
602 612 9.344772 ACGTCCTATAAATTTTATGGCATACAA 57.655 29.630 6.72 7.67 0.00 2.41
603 613 9.607285 CGTCCTATAAATTTTATGGCATACAAC 57.393 33.333 6.72 0.00 0.00 3.32
615 625 9.579768 TTTATGGCATACAACACATATTTCAAC 57.420 29.630 6.72 0.00 0.00 3.18
616 626 6.581171 TGGCATACAACACATATTTCAACA 57.419 33.333 0.00 0.00 0.00 3.33
617 627 6.619744 TGGCATACAACACATATTTCAACAG 58.380 36.000 0.00 0.00 0.00 3.16
618 628 6.208402 TGGCATACAACACATATTTCAACAGT 59.792 34.615 0.00 0.00 0.00 3.55
619 629 6.747280 GGCATACAACACATATTTCAACAGTC 59.253 38.462 0.00 0.00 0.00 3.51
620 630 7.304735 GCATACAACACATATTTCAACAGTCA 58.695 34.615 0.00 0.00 0.00 3.41
621 631 7.807433 GCATACAACACATATTTCAACAGTCAA 59.193 33.333 0.00 0.00 0.00 3.18
622 632 9.676195 CATACAACACATATTTCAACAGTCAAA 57.324 29.630 0.00 0.00 0.00 2.69
625 635 9.248291 ACAACACATATTTCAACAGTCAAAATC 57.752 29.630 0.00 0.00 0.00 2.17
626 636 8.419435 CAACACATATTTCAACAGTCAAAATCG 58.581 33.333 0.00 0.00 0.00 3.34
627 637 7.870826 ACACATATTTCAACAGTCAAAATCGA 58.129 30.769 0.00 0.00 0.00 3.59
628 638 8.017373 ACACATATTTCAACAGTCAAAATCGAG 58.983 33.333 0.00 0.00 0.00 4.04
629 639 7.482743 CACATATTTCAACAGTCAAAATCGAGG 59.517 37.037 0.00 0.00 0.00 4.63
630 640 7.390440 ACATATTTCAACAGTCAAAATCGAGGA 59.610 33.333 0.00 0.00 0.00 3.71
631 641 6.824305 ATTTCAACAGTCAAAATCGAGGAT 57.176 33.333 0.00 0.00 0.00 3.24
632 642 5.862924 TTCAACAGTCAAAATCGAGGATC 57.137 39.130 0.00 0.00 0.00 3.36
633 643 5.152623 TCAACAGTCAAAATCGAGGATCT 57.847 39.130 0.00 0.00 0.00 2.75
634 644 6.280855 TCAACAGTCAAAATCGAGGATCTA 57.719 37.500 0.00 0.00 0.00 1.98
635 645 6.697395 TCAACAGTCAAAATCGAGGATCTAA 58.303 36.000 0.00 0.00 0.00 2.10
636 646 7.158697 TCAACAGTCAAAATCGAGGATCTAAA 58.841 34.615 0.00 0.00 0.00 1.85
637 647 7.659799 TCAACAGTCAAAATCGAGGATCTAAAA 59.340 33.333 0.00 0.00 0.00 1.52
638 648 7.979444 ACAGTCAAAATCGAGGATCTAAAAA 57.021 32.000 0.00 0.00 0.00 1.94
639 649 7.807680 ACAGTCAAAATCGAGGATCTAAAAAC 58.192 34.615 0.00 0.00 0.00 2.43
640 650 7.094762 ACAGTCAAAATCGAGGATCTAAAAACC 60.095 37.037 0.00 0.00 0.00 3.27
641 651 7.119846 CAGTCAAAATCGAGGATCTAAAAACCT 59.880 37.037 0.00 0.00 36.68 3.50
642 652 7.119846 AGTCAAAATCGAGGATCTAAAAACCTG 59.880 37.037 0.00 0.00 33.89 4.00
643 653 6.940298 TCAAAATCGAGGATCTAAAAACCTGT 59.060 34.615 0.00 0.00 33.89 4.00
644 654 8.098286 TCAAAATCGAGGATCTAAAAACCTGTA 58.902 33.333 0.00 0.00 33.89 2.74
645 655 8.893727 CAAAATCGAGGATCTAAAAACCTGTAT 58.106 33.333 0.00 0.00 33.89 2.29
646 656 8.664211 AAATCGAGGATCTAAAAACCTGTATC 57.336 34.615 0.00 0.00 33.89 2.24
647 657 6.158023 TCGAGGATCTAAAAACCTGTATCC 57.842 41.667 0.00 0.00 33.89 2.59
648 658 4.982916 CGAGGATCTAAAAACCTGTATCCG 59.017 45.833 0.00 0.00 38.32 4.18
649 659 5.221185 CGAGGATCTAAAAACCTGTATCCGA 60.221 44.000 0.00 0.00 38.32 4.55
650 660 5.915175 AGGATCTAAAAACCTGTATCCGAC 58.085 41.667 0.00 0.00 38.32 4.79
651 661 5.661759 AGGATCTAAAAACCTGTATCCGACT 59.338 40.000 0.00 0.00 38.32 4.18
652 662 6.156429 AGGATCTAAAAACCTGTATCCGACTT 59.844 38.462 0.00 0.00 38.32 3.01
653 663 6.258068 GGATCTAAAAACCTGTATCCGACTTG 59.742 42.308 0.00 0.00 0.00 3.16
654 664 6.105397 TCTAAAAACCTGTATCCGACTTGT 57.895 37.500 0.00 0.00 0.00 3.16
655 665 7.230849 TCTAAAAACCTGTATCCGACTTGTA 57.769 36.000 0.00 0.00 0.00 2.41
656 666 7.844009 TCTAAAAACCTGTATCCGACTTGTAT 58.156 34.615 0.00 0.00 0.00 2.29
657 667 8.316214 TCTAAAAACCTGTATCCGACTTGTATT 58.684 33.333 0.00 0.00 0.00 1.89
658 668 6.980051 AAAACCTGTATCCGACTTGTATTC 57.020 37.500 0.00 0.00 0.00 1.75
659 669 4.667519 ACCTGTATCCGACTTGTATTCC 57.332 45.455 0.00 0.00 0.00 3.01
660 670 3.387050 ACCTGTATCCGACTTGTATTCCC 59.613 47.826 0.00 0.00 0.00 3.97
661 671 3.386726 CCTGTATCCGACTTGTATTCCCA 59.613 47.826 0.00 0.00 0.00 4.37
662 672 4.040461 CCTGTATCCGACTTGTATTCCCAT 59.960 45.833 0.00 0.00 0.00 4.00
663 673 5.209818 TGTATCCGACTTGTATTCCCATC 57.790 43.478 0.00 0.00 0.00 3.51
664 674 3.771577 ATCCGACTTGTATTCCCATCC 57.228 47.619 0.00 0.00 0.00 3.51
665 675 1.411246 TCCGACTTGTATTCCCATCCG 59.589 52.381 0.00 0.00 0.00 4.18
666 676 1.411246 CCGACTTGTATTCCCATCCGA 59.589 52.381 0.00 0.00 0.00 4.55
667 677 2.159014 CCGACTTGTATTCCCATCCGAA 60.159 50.000 0.00 0.00 0.00 4.30
668 678 3.123804 CGACTTGTATTCCCATCCGAAG 58.876 50.000 0.00 0.00 0.00 3.79
710 720 9.860898 AAAAAGATCTCCTATTTTTGTATGCAC 57.139 29.630 0.00 0.00 35.43 4.57
711 721 8.579850 AAAGATCTCCTATTTTTGTATGCACA 57.420 30.769 0.00 0.00 0.00 4.57
712 722 7.559590 AGATCTCCTATTTTTGTATGCACAC 57.440 36.000 0.00 0.00 33.30 3.82
713 723 7.112122 AGATCTCCTATTTTTGTATGCACACA 58.888 34.615 0.00 0.00 33.30 3.72
714 724 7.776969 AGATCTCCTATTTTTGTATGCACACAT 59.223 33.333 0.00 0.00 40.49 3.21
715 725 7.701539 TCTCCTATTTTTGTATGCACACATT 57.298 32.000 0.00 0.00 37.74 2.71
716 726 8.121305 TCTCCTATTTTTGTATGCACACATTT 57.879 30.769 0.00 0.00 37.74 2.32
717 727 8.584157 TCTCCTATTTTTGTATGCACACATTTT 58.416 29.630 0.00 0.00 37.74 1.82
718 728 8.531622 TCCTATTTTTGTATGCACACATTTTG 57.468 30.769 0.00 0.00 37.74 2.44
719 729 8.147058 TCCTATTTTTGTATGCACACATTTTGT 58.853 29.630 0.00 0.00 39.97 2.83
720 730 9.416794 CCTATTTTTGTATGCACACATTTTGTA 57.583 29.630 0.00 0.00 35.67 2.41
723 733 8.654230 TTTTTGTATGCACACATTTTGTATGT 57.346 26.923 0.00 0.00 35.67 2.29
724 734 7.865875 TTTGTATGCACACATTTTGTATGTC 57.134 32.000 0.00 0.00 35.67 3.06
725 735 6.816134 TGTATGCACACATTTTGTATGTCT 57.184 33.333 0.00 0.00 35.67 3.41
726 736 7.913674 TGTATGCACACATTTTGTATGTCTA 57.086 32.000 0.00 0.00 35.67 2.59
727 737 8.504812 TGTATGCACACATTTTGTATGTCTAT 57.495 30.769 0.00 0.00 35.67 1.98
728 738 8.397148 TGTATGCACACATTTTGTATGTCTATG 58.603 33.333 0.00 0.00 35.67 2.23
729 739 6.816134 TGCACACATTTTGTATGTCTATGT 57.184 33.333 0.00 0.00 35.67 2.29
730 740 6.841119 TGCACACATTTTGTATGTCTATGTC 58.159 36.000 0.00 0.00 35.67 3.06
731 741 6.429385 TGCACACATTTTGTATGTCTATGTCA 59.571 34.615 0.00 0.00 35.67 3.58
732 742 7.040823 TGCACACATTTTGTATGTCTATGTCAA 60.041 33.333 0.00 0.00 35.67 3.18
733 743 7.271223 GCACACATTTTGTATGTCTATGTCAAC 59.729 37.037 0.00 0.00 35.67 3.18
734 744 8.288913 CACACATTTTGTATGTCTATGTCAACA 58.711 33.333 0.00 0.00 35.67 3.33
735 745 8.289618 ACACATTTTGTATGTCTATGTCAACAC 58.710 33.333 0.00 0.00 36.32 3.32
736 746 8.506437 CACATTTTGTATGTCTATGTCAACACT 58.494 33.333 0.00 0.00 0.00 3.55
737 747 9.066892 ACATTTTGTATGTCTATGTCAACACTT 57.933 29.630 0.00 0.00 0.00 3.16
738 748 9.897744 CATTTTGTATGTCTATGTCAACACTTT 57.102 29.630 0.00 0.00 0.00 2.66
739 749 9.897744 ATTTTGTATGTCTATGTCAACACTTTG 57.102 29.630 0.00 0.00 0.00 2.77
740 750 8.445275 TTTGTATGTCTATGTCAACACTTTGT 57.555 30.769 0.00 0.00 34.02 2.83
741 751 9.549078 TTTGTATGTCTATGTCAACACTTTGTA 57.451 29.630 0.00 0.00 34.02 2.41
742 752 9.549078 TTGTATGTCTATGTCAACACTTTGTAA 57.451 29.630 0.00 0.00 34.02 2.41
743 753 8.984764 TGTATGTCTATGTCAACACTTTGTAAC 58.015 33.333 0.00 0.00 34.02 2.50
744 754 8.984764 GTATGTCTATGTCAACACTTTGTAACA 58.015 33.333 0.00 0.00 34.02 2.41
745 755 8.621532 ATGTCTATGTCAACACTTTGTAACAT 57.378 30.769 10.41 10.41 34.02 2.71
746 756 8.445275 TGTCTATGTCAACACTTTGTAACATT 57.555 30.769 10.69 0.59 34.02 2.71
747 757 9.549078 TGTCTATGTCAACACTTTGTAACATTA 57.451 29.630 10.69 1.62 34.02 1.90
801 811 9.148104 ACGAAGTGTATAAACTAAGAATGGAAC 57.852 33.333 0.00 0.00 42.51 3.62
802 812 9.367444 CGAAGTGTATAAACTAAGAATGGAACT 57.633 33.333 0.00 0.00 0.00 3.01
809 819 8.918202 ATAAACTAAGAATGGAACTGTTCACA 57.082 30.769 21.01 16.09 0.00 3.58
810 820 6.619801 AACTAAGAATGGAACTGTTCACAC 57.380 37.500 21.01 9.70 0.00 3.82
811 821 5.680619 ACTAAGAATGGAACTGTTCACACA 58.319 37.500 21.01 10.95 0.00 3.72
812 822 6.119536 ACTAAGAATGGAACTGTTCACACAA 58.880 36.000 21.01 2.83 30.36 3.33
813 823 5.913137 AAGAATGGAACTGTTCACACAAA 57.087 34.783 21.01 1.21 30.36 2.83
814 824 6.469782 AAGAATGGAACTGTTCACACAAAT 57.530 33.333 21.01 5.13 30.36 2.32
815 825 6.076981 AGAATGGAACTGTTCACACAAATC 57.923 37.500 21.01 12.26 30.36 2.17
816 826 4.853924 ATGGAACTGTTCACACAAATCC 57.146 40.909 21.01 2.88 37.87 3.01
817 827 3.897239 TGGAACTGTTCACACAAATCCT 58.103 40.909 21.01 0.00 38.07 3.24
818 828 3.631686 TGGAACTGTTCACACAAATCCTG 59.368 43.478 21.01 0.00 38.07 3.86
819 829 3.550842 GGAACTGTTCACACAAATCCTGC 60.551 47.826 21.01 0.00 35.88 4.85
820 830 1.603802 ACTGTTCACACAAATCCTGCG 59.396 47.619 0.00 0.00 30.36 5.18
821 831 1.603802 CTGTTCACACAAATCCTGCGT 59.396 47.619 0.00 0.00 30.36 5.24
822 832 2.805671 CTGTTCACACAAATCCTGCGTA 59.194 45.455 0.00 0.00 30.36 4.42
823 833 2.805671 TGTTCACACAAATCCTGCGTAG 59.194 45.455 0.00 0.00 0.00 3.51
824 834 3.064207 GTTCACACAAATCCTGCGTAGA 58.936 45.455 0.53 0.00 0.00 2.59
825 835 3.394674 TCACACAAATCCTGCGTAGAA 57.605 42.857 0.53 0.00 0.00 2.10
826 836 3.734463 TCACACAAATCCTGCGTAGAAA 58.266 40.909 0.53 0.00 0.00 2.52
827 837 4.323417 TCACACAAATCCTGCGTAGAAAT 58.677 39.130 0.53 0.00 0.00 2.17
828 838 4.759693 TCACACAAATCCTGCGTAGAAATT 59.240 37.500 0.53 0.00 0.00 1.82
829 839 4.853196 CACACAAATCCTGCGTAGAAATTG 59.147 41.667 0.53 6.36 0.00 2.32
830 840 4.518970 ACACAAATCCTGCGTAGAAATTGT 59.481 37.500 0.53 6.98 0.00 2.71
831 841 4.853196 CACAAATCCTGCGTAGAAATTGTG 59.147 41.667 20.90 20.90 0.00 3.33
832 842 4.759693 ACAAATCCTGCGTAGAAATTGTGA 59.240 37.500 0.53 0.00 0.00 3.58
833 843 5.240623 ACAAATCCTGCGTAGAAATTGTGAA 59.759 36.000 0.53 0.00 0.00 3.18
834 844 4.946784 ATCCTGCGTAGAAATTGTGAAC 57.053 40.909 0.53 0.00 0.00 3.18
835 845 3.071479 TCCTGCGTAGAAATTGTGAACC 58.929 45.455 0.53 0.00 0.00 3.62
836 846 2.811431 CCTGCGTAGAAATTGTGAACCA 59.189 45.455 0.53 0.00 0.00 3.67
837 847 3.440173 CCTGCGTAGAAATTGTGAACCAT 59.560 43.478 0.53 0.00 0.00 3.55
838 848 4.437390 CCTGCGTAGAAATTGTGAACCATC 60.437 45.833 0.53 0.00 0.00 3.51
839 849 4.323417 TGCGTAGAAATTGTGAACCATCT 58.677 39.130 0.00 0.00 0.00 2.90
840 850 4.154015 TGCGTAGAAATTGTGAACCATCTG 59.846 41.667 0.00 0.00 0.00 2.90
841 851 4.651994 CGTAGAAATTGTGAACCATCTGC 58.348 43.478 0.00 0.00 0.00 4.26
842 852 4.154015 CGTAGAAATTGTGAACCATCTGCA 59.846 41.667 0.00 0.00 0.00 4.41
843 853 5.163723 CGTAGAAATTGTGAACCATCTGCAT 60.164 40.000 0.00 0.00 0.00 3.96
844 854 5.320549 AGAAATTGTGAACCATCTGCATC 57.679 39.130 0.00 0.00 0.00 3.91
845 855 4.768448 AGAAATTGTGAACCATCTGCATCA 59.232 37.500 0.00 0.00 0.00 3.07
846 856 5.421056 AGAAATTGTGAACCATCTGCATCAT 59.579 36.000 0.00 0.00 0.00 2.45
847 857 4.913335 ATTGTGAACCATCTGCATCATC 57.087 40.909 0.00 0.00 0.00 2.92
848 858 3.639672 TGTGAACCATCTGCATCATCT 57.360 42.857 0.00 0.00 0.00 2.90
849 859 3.275999 TGTGAACCATCTGCATCATCTG 58.724 45.455 0.00 0.00 0.00 2.90
850 860 3.054948 TGTGAACCATCTGCATCATCTGA 60.055 43.478 0.00 0.00 0.00 3.27
851 861 4.135306 GTGAACCATCTGCATCATCTGAT 58.865 43.478 0.00 0.00 34.56 2.90
852 862 4.579340 GTGAACCATCTGCATCATCTGATT 59.421 41.667 0.00 0.00 31.21 2.57
853 863 5.067413 GTGAACCATCTGCATCATCTGATTT 59.933 40.000 0.00 0.00 31.21 2.17
854 864 5.298527 TGAACCATCTGCATCATCTGATTTC 59.701 40.000 0.00 0.00 31.21 2.17
855 865 4.788679 ACCATCTGCATCATCTGATTTCA 58.211 39.130 0.00 0.00 31.21 2.69
856 866 5.198207 ACCATCTGCATCATCTGATTTCAA 58.802 37.500 0.00 0.00 31.21 2.69
857 867 5.833667 ACCATCTGCATCATCTGATTTCAAT 59.166 36.000 0.00 0.00 31.21 2.57
858 868 6.016192 ACCATCTGCATCATCTGATTTCAATC 60.016 38.462 0.00 0.00 35.97 2.67
859 869 6.016276 CCATCTGCATCATCTGATTTCAATCA 60.016 38.462 2.29 2.29 42.78 2.57
860 870 7.425606 CATCTGCATCATCTGATTTCAATCAA 58.574 34.615 3.86 0.00 44.20 2.57
861 871 7.027778 TCTGCATCATCTGATTTCAATCAAG 57.972 36.000 3.86 0.00 44.20 3.02
862 872 6.602009 TCTGCATCATCTGATTTCAATCAAGT 59.398 34.615 3.86 0.00 44.20 3.16
863 873 6.560711 TGCATCATCTGATTTCAATCAAGTG 58.439 36.000 3.86 5.81 44.20 3.16
864 874 6.152154 TGCATCATCTGATTTCAATCAAGTGT 59.848 34.615 3.86 0.00 44.20 3.55
865 875 6.472486 GCATCATCTGATTTCAATCAAGTGTG 59.528 38.462 3.86 7.41 44.20 3.82
866 876 5.946298 TCATCTGATTTCAATCAAGTGTGC 58.054 37.500 3.86 0.00 44.20 4.57
867 877 4.771590 TCTGATTTCAATCAAGTGTGCC 57.228 40.909 3.86 0.00 44.20 5.01
868 878 4.143543 TCTGATTTCAATCAAGTGTGCCA 58.856 39.130 3.86 0.00 44.20 4.92
869 879 4.216902 TCTGATTTCAATCAAGTGTGCCAG 59.783 41.667 3.86 0.00 44.20 4.85
870 880 3.256383 TGATTTCAATCAAGTGTGCCAGG 59.744 43.478 0.00 0.00 42.11 4.45
871 881 0.961019 TTCAATCAAGTGTGCCAGGC 59.039 50.000 3.66 3.66 0.00 4.85
872 882 1.210931 CAATCAAGTGTGCCAGGCG 59.789 57.895 7.03 0.00 0.00 5.52
873 883 1.973281 AATCAAGTGTGCCAGGCGG 60.973 57.895 7.03 0.00 0.00 6.13
890 900 6.744112 CCAGGCGGCATTATTAAATTAAAGA 58.256 36.000 13.08 0.00 0.00 2.52
925 936 1.869767 CACTCGAAAGCAAAGCAGTCT 59.130 47.619 0.00 0.00 0.00 3.24
946 957 2.285977 GTCGTCAACACTGAAACCCTT 58.714 47.619 0.00 0.00 31.88 3.95
1167 1181 1.982958 TCCTTCCTACCACTCCCAAAC 59.017 52.381 0.00 0.00 0.00 2.93
1188 1202 1.364269 ACCACCGTTCCCCAATCTTA 58.636 50.000 0.00 0.00 0.00 2.10
1201 1215 2.681344 CCAATCTTACACGCCCCTAAAC 59.319 50.000 0.00 0.00 0.00 2.01
1235 1249 3.061322 TGAAATTCGATCGAAACACGGT 58.939 40.909 32.11 13.71 42.82 4.83
1496 1511 7.026631 TCTCCAATTGGTAAATGATAAAGCG 57.973 36.000 23.76 0.00 36.34 4.68
1562 1577 8.937634 TTTACTACTCCTTTCGTTCCATAATC 57.062 34.615 0.00 0.00 0.00 1.75
1567 1582 4.685924 TCCTTTCGTTCCATAATCCGTAC 58.314 43.478 0.00 0.00 0.00 3.67
1591 1634 3.485216 CCACGACAAGAATTATGGAACGC 60.485 47.826 0.00 0.00 0.00 4.84
1651 1724 9.868277 TTATTGCATTTTATTTACCACTCCTTG 57.132 29.630 0.00 0.00 0.00 3.61
1654 1727 4.428615 TTTTATTTACCACTCCTTGCGC 57.571 40.909 0.00 0.00 0.00 6.09
1672 1745 4.377021 TGCGCTCCATAATTCTTATCGTT 58.623 39.130 9.73 0.00 0.00 3.85
1691 1764 4.057432 CGTTGTTTTAGTTACGGAGGGAA 58.943 43.478 0.00 0.00 0.00 3.97
1761 1840 7.291411 ACTATTAGGCTAATACAGTGAGTGG 57.709 40.000 20.35 11.36 0.00 4.00
1768 1847 1.269958 ATACAGTGAGTGGCTGCTCA 58.730 50.000 0.00 7.96 42.56 4.26
1887 1966 2.380064 ACCATTTGGAGGCAAAGACA 57.620 45.000 3.01 0.00 38.94 3.41
2010 2089 3.828875 TTCAAAACCGGCCAAATTTCT 57.171 38.095 0.00 0.00 0.00 2.52
2014 2093 2.009681 AACCGGCCAAATTTCTTCCT 57.990 45.000 0.00 0.00 0.00 3.36
2031 2110 0.897621 CCTTGTCCCCAATCAAAGCC 59.102 55.000 0.00 0.00 0.00 4.35
2061 2140 3.443329 TCATGACGTGGAATGGATTTTGG 59.557 43.478 0.00 0.00 0.00 3.28
2062 2141 3.147553 TGACGTGGAATGGATTTTGGA 57.852 42.857 0.00 0.00 0.00 3.53
2097 2878 2.357952 GAGGGACGAAAAGCAAACAAGT 59.642 45.455 0.00 0.00 0.00 3.16
2219 3000 4.928661 TTCTGAATCTAAAGAAGCGTGC 57.071 40.909 0.00 0.00 0.00 5.34
2297 3078 7.230849 TGCAATTGTAAATGGAATCTTGAGT 57.769 32.000 7.40 0.00 0.00 3.41
2426 3207 7.288621 TCTGTGATGACTACTGATATGATGGTT 59.711 37.037 0.00 0.00 0.00 3.67
2444 3225 3.882888 TGGTTTCAGGCTCACTAAACTTG 59.117 43.478 9.69 0.00 33.40 3.16
2488 3270 0.033504 TTTTCGAGCAGCTTCTCCGT 59.966 50.000 7.84 0.00 0.00 4.69
2497 3279 1.874466 GCTTCTCCGTAGCAGCGAC 60.874 63.158 0.00 0.00 38.51 5.19
2789 3625 9.874205 AATGTGATCCAGTTTTAATTAATGTGG 57.126 29.630 11.98 11.98 0.00 4.17
3017 3853 0.882474 ACGACCTCAAGGAGAAGTCG 59.118 55.000 17.48 17.48 44.04 4.18
3168 4005 4.021925 GGCTGGGCGAGGTGAAGT 62.022 66.667 0.00 0.00 0.00 3.01
3455 4298 5.351948 AGATCAAAGGGAAGAAGCTACTC 57.648 43.478 0.00 0.00 0.00 2.59
3603 4458 7.760794 ACACCAATGTAATTATGCAAATGTGAG 59.239 33.333 0.00 0.00 37.26 3.51
3622 4477 3.706373 CGCTACTGGTGTGGGCCT 61.706 66.667 4.53 0.00 0.00 5.19
3630 4485 2.906897 GTGTGGGCCTGGTGTGTG 60.907 66.667 4.53 0.00 0.00 3.82
3631 4486 3.093172 TGTGGGCCTGGTGTGTGA 61.093 61.111 4.53 0.00 0.00 3.58
3632 4487 2.194597 GTGGGCCTGGTGTGTGAA 59.805 61.111 4.53 0.00 0.00 3.18
3633 4488 1.228552 GTGGGCCTGGTGTGTGAAT 60.229 57.895 4.53 0.00 0.00 2.57
3656 4511 4.638421 TGGTGTGTAAAGAAGTTTGTGAGG 59.362 41.667 0.00 0.00 0.00 3.86
3666 4521 2.643551 AGTTTGTGAGGAAGTGGTGTG 58.356 47.619 0.00 0.00 0.00 3.82
3694 4563 1.881973 GCTCTGTTGTCCAGCATGAAA 59.118 47.619 0.00 0.00 41.25 2.69
3757 4631 1.293062 ATGGAGTTGATCTGGCTGGT 58.707 50.000 0.00 0.00 0.00 4.00
3776 4652 2.427320 GTGCTGTGCCTGGTCTGA 59.573 61.111 0.00 0.00 0.00 3.27
3798 4674 6.679542 TGATCTAGAATTGGTCCTGGTAGTA 58.320 40.000 0.00 0.00 0.00 1.82
3799 4675 6.778069 TGATCTAGAATTGGTCCTGGTAGTAG 59.222 42.308 0.00 0.00 0.00 2.57
3800 4676 6.088541 TCTAGAATTGGTCCTGGTAGTAGT 57.911 41.667 0.00 0.00 0.00 2.73
3901 4893 5.355630 TGACAAAATTCGAGTTGTTCCTTGA 59.644 36.000 11.15 0.00 38.07 3.02
3938 4930 8.958119 ATACTAGTCCGAGAAATGCATAAAAA 57.042 30.769 0.00 0.00 0.00 1.94
3939 4931 7.865706 ACTAGTCCGAGAAATGCATAAAAAT 57.134 32.000 0.00 0.00 0.00 1.82
3940 4932 7.697691 ACTAGTCCGAGAAATGCATAAAAATG 58.302 34.615 0.00 0.00 0.00 2.32
3941 4933 5.894807 AGTCCGAGAAATGCATAAAAATGG 58.105 37.500 0.00 0.00 0.00 3.16
3942 4934 5.652014 AGTCCGAGAAATGCATAAAAATGGA 59.348 36.000 0.00 0.73 0.00 3.41
3943 4935 6.322201 AGTCCGAGAAATGCATAAAAATGGAT 59.678 34.615 0.00 0.00 33.93 3.41
3944 4936 6.418819 GTCCGAGAAATGCATAAAAATGGATG 59.581 38.462 0.00 0.00 32.82 3.51
3945 4937 6.096705 TCCGAGAAATGCATAAAAATGGATGT 59.903 34.615 0.00 0.00 32.82 3.06
3946 4938 7.284261 TCCGAGAAATGCATAAAAATGGATGTA 59.716 33.333 0.00 0.00 32.82 2.29
3947 4939 8.084073 CCGAGAAATGCATAAAAATGGATGTAT 58.916 33.333 0.00 0.00 32.82 2.29
3948 4940 9.121517 CGAGAAATGCATAAAAATGGATGTATC 57.878 33.333 0.00 0.00 32.82 2.24
3986 4978 9.915629 AATACGTCTAGATACATTCATTCCTTC 57.084 33.333 0.00 0.00 0.00 3.46
3987 4979 7.348080 ACGTCTAGATACATTCATTCCTTCA 57.652 36.000 0.00 0.00 0.00 3.02
3988 4980 7.957002 ACGTCTAGATACATTCATTCCTTCAT 58.043 34.615 0.00 0.00 0.00 2.57
3989 4981 8.424918 ACGTCTAGATACATTCATTCCTTCATT 58.575 33.333 0.00 0.00 0.00 2.57
3990 4982 8.920665 CGTCTAGATACATTCATTCCTTCATTC 58.079 37.037 0.00 0.00 0.00 2.67
3991 4983 9.213799 GTCTAGATACATTCATTCCTTCATTCC 57.786 37.037 0.00 0.00 0.00 3.01
3992 4984 9.163894 TCTAGATACATTCATTCCTTCATTCCT 57.836 33.333 0.00 0.00 0.00 3.36
3993 4985 9.434420 CTAGATACATTCATTCCTTCATTCCTC 57.566 37.037 0.00 0.00 0.00 3.71
3994 4986 7.230027 AGATACATTCATTCCTTCATTCCTCC 58.770 38.462 0.00 0.00 0.00 4.30
3995 4987 4.202441 ACATTCATTCCTTCATTCCTCCG 58.798 43.478 0.00 0.00 0.00 4.63
3996 4988 4.080356 ACATTCATTCCTTCATTCCTCCGA 60.080 41.667 0.00 0.00 0.00 4.55
3997 4989 3.543680 TCATTCCTTCATTCCTCCGAC 57.456 47.619 0.00 0.00 0.00 4.79
3998 4990 2.837591 TCATTCCTTCATTCCTCCGACA 59.162 45.455 0.00 0.00 0.00 4.35
3999 4991 3.263170 TCATTCCTTCATTCCTCCGACAA 59.737 43.478 0.00 0.00 0.00 3.18
4000 4992 3.334583 TTCCTTCATTCCTCCGACAAG 57.665 47.619 0.00 0.00 0.00 3.16
4001 4993 2.257207 TCCTTCATTCCTCCGACAAGT 58.743 47.619 0.00 0.00 0.00 3.16
4002 4994 3.437213 TCCTTCATTCCTCCGACAAGTA 58.563 45.455 0.00 0.00 0.00 2.24
4003 4995 4.030913 TCCTTCATTCCTCCGACAAGTAT 58.969 43.478 0.00 0.00 0.00 2.12
4004 4996 4.469945 TCCTTCATTCCTCCGACAAGTATT 59.530 41.667 0.00 0.00 0.00 1.89
4005 4997 5.045869 TCCTTCATTCCTCCGACAAGTATTT 60.046 40.000 0.00 0.00 0.00 1.40
4006 4998 5.294552 CCTTCATTCCTCCGACAAGTATTTC 59.705 44.000 0.00 0.00 0.00 2.17
4007 4999 4.766375 TCATTCCTCCGACAAGTATTTCC 58.234 43.478 0.00 0.00 0.00 3.13
4008 5000 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
4009 5001 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
4010 5002 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
4011 5003 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
4012 5004 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
4013 5005 1.135315 CCGACAAGTATTTCCGGACGA 60.135 52.381 1.83 0.00 42.49 4.20
4014 5006 2.598589 CGACAAGTATTTCCGGACGAA 58.401 47.619 1.83 0.00 0.00 3.85
4015 5007 2.597305 CGACAAGTATTTCCGGACGAAG 59.403 50.000 1.83 0.00 0.00 3.79
4016 5008 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
4017 5009 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
4018 5010 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
4019 5011 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
4020 5012 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
4021 5013 1.856629 ATTTCCGGACGAAGGGAGTA 58.143 50.000 1.83 0.00 33.01 2.59
4022 5014 1.180029 TTTCCGGACGAAGGGAGTAG 58.820 55.000 1.83 0.00 33.01 2.57
4023 5015 0.682209 TTCCGGACGAAGGGAGTAGG 60.682 60.000 1.83 0.00 33.01 3.18
4024 5016 1.077212 CCGGACGAAGGGAGTAGGA 60.077 63.158 0.00 0.00 0.00 2.94
4025 5017 0.682209 CCGGACGAAGGGAGTAGGAA 60.682 60.000 0.00 0.00 0.00 3.36
4026 5018 1.180029 CGGACGAAGGGAGTAGGAAA 58.820 55.000 0.00 0.00 0.00 3.13
4027 5019 1.755380 CGGACGAAGGGAGTAGGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
4028 5020 2.167900 CGGACGAAGGGAGTAGGAAATT 59.832 50.000 0.00 0.00 0.00 1.82
4029 5021 3.382546 CGGACGAAGGGAGTAGGAAATTA 59.617 47.826 0.00 0.00 0.00 1.40
4030 5022 4.038883 CGGACGAAGGGAGTAGGAAATTAT 59.961 45.833 0.00 0.00 0.00 1.28
4031 5023 5.242393 CGGACGAAGGGAGTAGGAAATTATA 59.758 44.000 0.00 0.00 0.00 0.98
4034 5026 8.249638 GGACGAAGGGAGTAGGAAATTATATAC 58.750 40.741 0.00 0.00 0.00 1.47
4059 5058 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4080 5079 8.304202 AGAGCATTTAGATCACTAAAATAGCG 57.696 34.615 0.00 0.00 46.90 4.26
4118 5124 9.294614 CTTATATTAGTTTACGGAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
4120 5126 8.860780 ATATTAGTTTACGGAGGGAGTAGTAG 57.139 38.462 0.00 0.00 0.00 2.57
4121 5127 3.286353 AGTTTACGGAGGGAGTAGTAGC 58.714 50.000 0.00 0.00 0.00 3.58
4125 5131 0.945813 CGGAGGGAGTAGTAGCGAAG 59.054 60.000 0.00 0.00 0.00 3.79
4126 5132 1.474677 CGGAGGGAGTAGTAGCGAAGA 60.475 57.143 0.00 0.00 0.00 2.87
4127 5133 2.652590 GGAGGGAGTAGTAGCGAAGAA 58.347 52.381 0.00 0.00 0.00 2.52
4128 5134 3.022406 GGAGGGAGTAGTAGCGAAGAAA 58.978 50.000 0.00 0.00 0.00 2.52
4129 5135 3.181488 GGAGGGAGTAGTAGCGAAGAAAC 60.181 52.174 0.00 0.00 0.00 2.78
4130 5136 3.428532 AGGGAGTAGTAGCGAAGAAACA 58.571 45.455 0.00 0.00 0.00 2.83
4131 5137 3.444388 AGGGAGTAGTAGCGAAGAAACAG 59.556 47.826 0.00 0.00 0.00 3.16
4194 5200 0.318784 GAAGAGTCGGTCGCTTGTGT 60.319 55.000 0.00 0.00 36.38 3.72
4240 5246 3.377485 CCATGGCAGACTGAATCTTCTTG 59.623 47.826 6.65 0.00 34.41 3.02
4249 5255 5.068460 AGACTGAATCTTCTTGGGATAGACG 59.932 44.000 0.00 0.00 31.62 4.18
4261 5267 2.300437 GGGATAGACGGATGGAAGGAAG 59.700 54.545 0.00 0.00 0.00 3.46
4269 5290 1.087501 GATGGAAGGAAGGTGCGAAC 58.912 55.000 0.00 0.00 0.00 3.95
4307 5331 1.416243 AAACGGTTTCCCTTTTCCCC 58.584 50.000 0.00 0.00 26.24 4.81
4318 5342 2.628178 CCCTTTTCCCCTGAAAACTGAC 59.372 50.000 0.00 0.00 43.68 3.51
4323 5352 3.208747 TCCCCTGAAAACTGACAGAAC 57.791 47.619 10.08 0.00 36.38 3.01
4328 5357 4.342772 CCTGAAAACTGACAGAACGTTTG 58.657 43.478 10.08 5.61 36.38 2.93
4352 5385 3.492311 GAGGAGAGATCGTGGGCGC 62.492 68.421 0.00 0.00 38.14 6.53
4363 5396 4.028490 TGGGCGCGGATGAAGGTT 62.028 61.111 8.83 0.00 0.00 3.50
4364 5397 2.188469 GGGCGCGGATGAAGGTTA 59.812 61.111 8.83 0.00 0.00 2.85
4365 5398 2.178235 GGGCGCGGATGAAGGTTAC 61.178 63.158 8.83 0.00 0.00 2.50
4366 5399 2.178235 GGCGCGGATGAAGGTTACC 61.178 63.158 8.83 0.00 0.00 2.85
4404 5437 4.351938 CGCGTTCGTGGGAGGACA 62.352 66.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.634757 TTGCCATCTGCTTACGTGCG 61.635 55.000 0.00 0.00 42.00 5.34
397 405 2.147958 GAAGTTGATAACGCCCACACA 58.852 47.619 0.00 0.00 36.23 3.72
459 469 4.151883 ACAAGTAATGCCCACACATCTTT 58.848 39.130 0.00 0.00 0.00 2.52
460 470 3.766545 ACAAGTAATGCCCACACATCTT 58.233 40.909 0.00 0.00 0.00 2.40
575 585 8.779303 TGTATGCCATAAAATTTATAGGACGTG 58.221 33.333 14.21 0.00 0.00 4.49
589 599 9.579768 GTTGAAATATGTGTTGTATGCCATAAA 57.420 29.630 0.00 0.00 0.00 1.40
590 600 8.743714 TGTTGAAATATGTGTTGTATGCCATAA 58.256 29.630 0.00 0.00 0.00 1.90
591 601 8.286191 TGTTGAAATATGTGTTGTATGCCATA 57.714 30.769 0.00 0.00 0.00 2.74
592 602 7.093814 ACTGTTGAAATATGTGTTGTATGCCAT 60.094 33.333 0.00 0.00 0.00 4.40
593 603 6.208402 ACTGTTGAAATATGTGTTGTATGCCA 59.792 34.615 0.00 0.00 0.00 4.92
594 604 6.620678 ACTGTTGAAATATGTGTTGTATGCC 58.379 36.000 0.00 0.00 0.00 4.40
595 605 7.304735 TGACTGTTGAAATATGTGTTGTATGC 58.695 34.615 0.00 0.00 0.00 3.14
596 606 9.676195 TTTGACTGTTGAAATATGTGTTGTATG 57.324 29.630 0.00 0.00 0.00 2.39
599 609 9.248291 GATTTTGACTGTTGAAATATGTGTTGT 57.752 29.630 3.36 0.00 0.00 3.32
600 610 8.419435 CGATTTTGACTGTTGAAATATGTGTTG 58.581 33.333 3.36 0.00 0.00 3.33
601 611 8.349245 TCGATTTTGACTGTTGAAATATGTGTT 58.651 29.630 3.36 0.00 0.00 3.32
602 612 7.870826 TCGATTTTGACTGTTGAAATATGTGT 58.129 30.769 3.36 0.00 0.00 3.72
603 613 7.482743 CCTCGATTTTGACTGTTGAAATATGTG 59.517 37.037 0.00 2.15 0.00 3.21
604 614 7.390440 TCCTCGATTTTGACTGTTGAAATATGT 59.610 33.333 0.00 0.00 0.00 2.29
605 615 7.751732 TCCTCGATTTTGACTGTTGAAATATG 58.248 34.615 0.00 1.34 0.00 1.78
606 616 7.921786 TCCTCGATTTTGACTGTTGAAATAT 57.078 32.000 0.00 0.00 0.00 1.28
607 617 7.824289 AGATCCTCGATTTTGACTGTTGAAATA 59.176 33.333 0.00 0.00 0.00 1.40
608 618 6.656693 AGATCCTCGATTTTGACTGTTGAAAT 59.343 34.615 0.00 3.09 0.00 2.17
609 619 5.997746 AGATCCTCGATTTTGACTGTTGAAA 59.002 36.000 0.00 0.00 0.00 2.69
610 620 5.551233 AGATCCTCGATTTTGACTGTTGAA 58.449 37.500 0.00 0.00 0.00 2.69
611 621 5.152623 AGATCCTCGATTTTGACTGTTGA 57.847 39.130 0.00 0.00 0.00 3.18
612 622 6.968131 TTAGATCCTCGATTTTGACTGTTG 57.032 37.500 0.00 0.00 0.00 3.33
613 623 7.979444 TTTTAGATCCTCGATTTTGACTGTT 57.021 32.000 0.00 0.00 0.00 3.16
614 624 7.094762 GGTTTTTAGATCCTCGATTTTGACTGT 60.095 37.037 0.00 0.00 0.00 3.55
615 625 7.119846 AGGTTTTTAGATCCTCGATTTTGACTG 59.880 37.037 0.00 0.00 0.00 3.51
616 626 7.119846 CAGGTTTTTAGATCCTCGATTTTGACT 59.880 37.037 0.00 0.00 0.00 3.41
617 627 7.094762 ACAGGTTTTTAGATCCTCGATTTTGAC 60.095 37.037 0.00 0.00 0.00 3.18
618 628 6.940298 ACAGGTTTTTAGATCCTCGATTTTGA 59.060 34.615 0.00 0.00 0.00 2.69
619 629 7.145932 ACAGGTTTTTAGATCCTCGATTTTG 57.854 36.000 0.00 0.00 0.00 2.44
620 630 9.110502 GATACAGGTTTTTAGATCCTCGATTTT 57.889 33.333 0.00 0.00 0.00 1.82
621 631 7.715686 GGATACAGGTTTTTAGATCCTCGATTT 59.284 37.037 0.00 0.00 31.88 2.17
622 632 7.217906 GGATACAGGTTTTTAGATCCTCGATT 58.782 38.462 0.00 0.00 31.88 3.34
623 633 6.516860 CGGATACAGGTTTTTAGATCCTCGAT 60.517 42.308 0.00 0.00 32.32 3.59
624 634 5.221185 CGGATACAGGTTTTTAGATCCTCGA 60.221 44.000 0.00 0.00 32.32 4.04
625 635 4.982916 CGGATACAGGTTTTTAGATCCTCG 59.017 45.833 0.00 0.00 32.32 4.63
626 636 5.984323 GTCGGATACAGGTTTTTAGATCCTC 59.016 44.000 0.00 0.00 32.32 3.71
627 637 5.661759 AGTCGGATACAGGTTTTTAGATCCT 59.338 40.000 0.00 0.00 32.32 3.24
628 638 5.915175 AGTCGGATACAGGTTTTTAGATCC 58.085 41.667 0.00 0.00 0.00 3.36
629 639 6.817140 ACAAGTCGGATACAGGTTTTTAGATC 59.183 38.462 0.00 0.00 0.00 2.75
630 640 6.708285 ACAAGTCGGATACAGGTTTTTAGAT 58.292 36.000 0.00 0.00 0.00 1.98
631 641 6.105397 ACAAGTCGGATACAGGTTTTTAGA 57.895 37.500 0.00 0.00 0.00 2.10
632 642 8.488651 AATACAAGTCGGATACAGGTTTTTAG 57.511 34.615 0.00 0.00 0.00 1.85
633 643 7.550196 GGAATACAAGTCGGATACAGGTTTTTA 59.450 37.037 0.00 0.00 0.00 1.52
634 644 6.373495 GGAATACAAGTCGGATACAGGTTTTT 59.627 38.462 0.00 0.00 0.00 1.94
635 645 5.878669 GGAATACAAGTCGGATACAGGTTTT 59.121 40.000 0.00 0.00 0.00 2.43
636 646 5.425630 GGAATACAAGTCGGATACAGGTTT 58.574 41.667 0.00 0.00 0.00 3.27
637 647 4.141779 GGGAATACAAGTCGGATACAGGTT 60.142 45.833 0.00 0.00 0.00 3.50
638 648 3.387050 GGGAATACAAGTCGGATACAGGT 59.613 47.826 0.00 0.00 0.00 4.00
639 649 3.386726 TGGGAATACAAGTCGGATACAGG 59.613 47.826 0.00 0.00 0.00 4.00
640 650 4.665833 TGGGAATACAAGTCGGATACAG 57.334 45.455 0.00 0.00 0.00 2.74
641 651 4.039973 GGATGGGAATACAAGTCGGATACA 59.960 45.833 0.00 0.00 0.00 2.29
642 652 4.566987 GGATGGGAATACAAGTCGGATAC 58.433 47.826 0.00 0.00 0.00 2.24
643 653 3.257375 CGGATGGGAATACAAGTCGGATA 59.743 47.826 0.00 0.00 0.00 2.59
644 654 2.037251 CGGATGGGAATACAAGTCGGAT 59.963 50.000 0.00 0.00 0.00 4.18
645 655 1.411246 CGGATGGGAATACAAGTCGGA 59.589 52.381 0.00 0.00 0.00 4.55
646 656 1.411246 TCGGATGGGAATACAAGTCGG 59.589 52.381 0.00 0.00 0.00 4.79
647 657 2.882927 TCGGATGGGAATACAAGTCG 57.117 50.000 0.00 0.00 0.00 4.18
648 658 3.467803 CCTTCGGATGGGAATACAAGTC 58.532 50.000 2.05 0.00 0.00 3.01
649 659 2.421529 GCCTTCGGATGGGAATACAAGT 60.422 50.000 11.46 0.00 0.00 3.16
650 660 2.222027 GCCTTCGGATGGGAATACAAG 58.778 52.381 11.46 0.00 0.00 3.16
651 661 1.562008 TGCCTTCGGATGGGAATACAA 59.438 47.619 11.46 0.00 0.00 2.41
652 662 1.140852 CTGCCTTCGGATGGGAATACA 59.859 52.381 11.46 0.65 0.00 2.29
653 663 1.141053 ACTGCCTTCGGATGGGAATAC 59.859 52.381 11.46 0.00 0.00 1.89
654 664 1.507140 ACTGCCTTCGGATGGGAATA 58.493 50.000 11.46 0.00 0.00 1.75
655 665 1.141053 GTACTGCCTTCGGATGGGAAT 59.859 52.381 11.46 1.58 0.00 3.01
656 666 0.539986 GTACTGCCTTCGGATGGGAA 59.460 55.000 11.46 0.00 0.00 3.97
657 667 0.616395 TGTACTGCCTTCGGATGGGA 60.616 55.000 11.46 7.88 0.00 4.37
658 668 0.469917 ATGTACTGCCTTCGGATGGG 59.530 55.000 11.46 3.03 0.00 4.00
659 669 1.138859 TCATGTACTGCCTTCGGATGG 59.861 52.381 5.59 5.59 0.00 3.51
660 670 2.159043 AGTCATGTACTGCCTTCGGATG 60.159 50.000 0.00 0.00 36.93 3.51
661 671 2.111384 AGTCATGTACTGCCTTCGGAT 58.889 47.619 0.00 0.00 36.93 4.18
662 672 1.557099 AGTCATGTACTGCCTTCGGA 58.443 50.000 0.00 0.00 36.93 4.55
663 673 3.520290 TTAGTCATGTACTGCCTTCGG 57.480 47.619 7.74 0.00 39.39 4.30
664 674 5.856126 TTTTTAGTCATGTACTGCCTTCG 57.144 39.130 7.74 0.00 39.39 3.79
684 694 9.860898 GTGCATACAAAAATAGGAGATCTTTTT 57.139 29.630 0.00 0.00 33.57 1.94
685 695 9.023962 TGTGCATACAAAAATAGGAGATCTTTT 57.976 29.630 0.00 0.00 32.88 2.27
686 696 8.462016 GTGTGCATACAAAAATAGGAGATCTTT 58.538 33.333 8.93 0.00 38.82 2.52
687 697 7.611467 TGTGTGCATACAAAAATAGGAGATCTT 59.389 33.333 14.48 0.00 38.82 2.40
688 698 7.112122 TGTGTGCATACAAAAATAGGAGATCT 58.888 34.615 14.48 0.00 38.82 2.75
689 699 7.320443 TGTGTGCATACAAAAATAGGAGATC 57.680 36.000 14.48 0.00 38.82 2.75
690 700 7.886629 ATGTGTGCATACAAAAATAGGAGAT 57.113 32.000 20.65 0.00 38.82 2.75
691 701 7.701539 AATGTGTGCATACAAAAATAGGAGA 57.298 32.000 20.65 0.00 38.82 3.71
692 702 8.649841 CAAAATGTGTGCATACAAAAATAGGAG 58.350 33.333 20.65 0.85 38.82 3.69
693 703 8.147058 ACAAAATGTGTGCATACAAAAATAGGA 58.853 29.630 20.65 0.00 39.72 2.94
694 704 8.309163 ACAAAATGTGTGCATACAAAAATAGG 57.691 30.769 20.65 8.91 39.72 2.57
697 707 9.270640 ACATACAAAATGTGTGCATACAAAAAT 57.729 25.926 20.65 7.96 42.26 1.82
698 708 8.654230 ACATACAAAATGTGTGCATACAAAAA 57.346 26.923 20.65 3.94 42.26 1.94
699 709 8.140628 AGACATACAAAATGTGTGCATACAAAA 58.859 29.630 20.65 0.00 42.26 2.44
700 710 7.656412 AGACATACAAAATGTGTGCATACAAA 58.344 30.769 20.65 0.00 42.26 2.83
701 711 7.213216 AGACATACAAAATGTGTGCATACAA 57.787 32.000 20.65 3.00 42.26 2.41
702 712 6.816134 AGACATACAAAATGTGTGCATACA 57.184 33.333 19.10 19.10 42.26 2.29
703 713 8.397906 ACATAGACATACAAAATGTGTGCATAC 58.602 33.333 6.65 6.65 42.26 2.39
704 714 8.504812 ACATAGACATACAAAATGTGTGCATA 57.495 30.769 7.08 0.00 42.26 3.14
705 715 7.121020 TGACATAGACATACAAAATGTGTGCAT 59.879 33.333 7.08 0.05 42.26 3.96
706 716 6.429385 TGACATAGACATACAAAATGTGTGCA 59.571 34.615 7.08 0.00 42.26 4.57
707 717 6.841119 TGACATAGACATACAAAATGTGTGC 58.159 36.000 7.08 1.66 42.26 4.57
708 718 8.288913 TGTTGACATAGACATACAAAATGTGTG 58.711 33.333 5.80 5.80 43.80 3.82
709 719 8.289618 GTGTTGACATAGACATACAAAATGTGT 58.710 33.333 0.00 0.00 44.82 3.72
710 720 8.506437 AGTGTTGACATAGACATACAAAATGTG 58.494 33.333 0.00 0.00 31.19 3.21
711 721 8.621532 AGTGTTGACATAGACATACAAAATGT 57.378 30.769 0.00 0.00 33.63 2.71
712 722 9.897744 AAAGTGTTGACATAGACATACAAAATG 57.102 29.630 0.00 0.00 0.00 2.32
713 723 9.897744 CAAAGTGTTGACATAGACATACAAAAT 57.102 29.630 0.00 0.00 36.83 1.82
714 724 8.898761 ACAAAGTGTTGACATAGACATACAAAA 58.101 29.630 0.00 0.00 38.20 2.44
715 725 8.445275 ACAAAGTGTTGACATAGACATACAAA 57.555 30.769 0.00 0.00 38.20 2.83
716 726 9.549078 TTACAAAGTGTTGACATAGACATACAA 57.451 29.630 0.00 0.00 38.20 2.41
717 727 8.984764 GTTACAAAGTGTTGACATAGACATACA 58.015 33.333 0.00 0.00 38.20 2.29
718 728 8.984764 TGTTACAAAGTGTTGACATAGACATAC 58.015 33.333 0.00 0.00 38.20 2.39
719 729 9.719355 ATGTTACAAAGTGTTGACATAGACATA 57.281 29.630 7.77 0.00 35.56 2.29
720 730 8.621532 ATGTTACAAAGTGTTGACATAGACAT 57.378 30.769 7.77 0.00 35.56 3.06
721 731 8.445275 AATGTTACAAAGTGTTGACATAGACA 57.555 30.769 9.21 0.00 35.97 3.41
764 774 9.953697 AGTTTATACACTTCGTGCATTTTAAAA 57.046 25.926 2.51 2.51 36.98 1.52
768 778 8.995220 TCTTAGTTTATACACTTCGTGCATTTT 58.005 29.630 0.00 0.00 36.98 1.82
769 779 8.542497 TCTTAGTTTATACACTTCGTGCATTT 57.458 30.769 0.00 0.00 36.98 2.32
770 780 8.542497 TTCTTAGTTTATACACTTCGTGCATT 57.458 30.769 0.00 0.00 36.98 3.56
771 781 8.604035 CATTCTTAGTTTATACACTTCGTGCAT 58.396 33.333 0.00 0.00 36.98 3.96
772 782 7.064134 CCATTCTTAGTTTATACACTTCGTGCA 59.936 37.037 0.00 0.00 36.98 4.57
773 783 7.277098 TCCATTCTTAGTTTATACACTTCGTGC 59.723 37.037 0.00 0.00 36.98 5.34
774 784 8.697846 TCCATTCTTAGTTTATACACTTCGTG 57.302 34.615 0.00 0.00 39.75 4.35
775 785 9.148104 GTTCCATTCTTAGTTTATACACTTCGT 57.852 33.333 0.00 0.00 0.00 3.85
776 786 9.367444 AGTTCCATTCTTAGTTTATACACTTCG 57.633 33.333 0.00 0.00 0.00 3.79
784 794 8.784043 GTGTGAACAGTTCCATTCTTAGTTTAT 58.216 33.333 10.93 0.00 0.00 1.40
785 795 7.771361 TGTGTGAACAGTTCCATTCTTAGTTTA 59.229 33.333 10.93 0.00 0.00 2.01
786 796 6.601613 TGTGTGAACAGTTCCATTCTTAGTTT 59.398 34.615 10.93 0.00 0.00 2.66
787 797 6.119536 TGTGTGAACAGTTCCATTCTTAGTT 58.880 36.000 10.93 0.00 0.00 2.24
788 798 5.680619 TGTGTGAACAGTTCCATTCTTAGT 58.319 37.500 10.93 0.00 0.00 2.24
789 799 6.618287 TTGTGTGAACAGTTCCATTCTTAG 57.382 37.500 10.93 0.00 0.00 2.18
790 800 7.255451 GGATTTGTGTGAACAGTTCCATTCTTA 60.255 37.037 10.93 0.00 0.00 2.10
791 801 5.913137 TTTGTGTGAACAGTTCCATTCTT 57.087 34.783 10.93 0.00 0.00 2.52
792 802 5.010012 GGATTTGTGTGAACAGTTCCATTCT 59.990 40.000 10.93 0.00 0.00 2.40
793 803 5.010012 AGGATTTGTGTGAACAGTTCCATTC 59.990 40.000 10.93 2.93 0.00 2.67
794 804 4.895297 AGGATTTGTGTGAACAGTTCCATT 59.105 37.500 10.93 0.00 0.00 3.16
795 805 4.279169 CAGGATTTGTGTGAACAGTTCCAT 59.721 41.667 10.93 0.00 0.00 3.41
796 806 3.631686 CAGGATTTGTGTGAACAGTTCCA 59.368 43.478 10.93 5.69 0.00 3.53
797 807 3.550842 GCAGGATTTGTGTGAACAGTTCC 60.551 47.826 10.93 3.14 0.00 3.62
798 808 3.632189 GCAGGATTTGTGTGAACAGTTC 58.368 45.455 6.32 6.32 0.00 3.01
799 809 2.033299 CGCAGGATTTGTGTGAACAGTT 59.967 45.455 0.00 0.00 32.55 3.16
800 810 1.603802 CGCAGGATTTGTGTGAACAGT 59.396 47.619 0.00 0.00 32.55 3.55
801 811 2.320805 CGCAGGATTTGTGTGAACAG 57.679 50.000 0.00 0.00 32.55 3.16
808 818 4.853196 CACAATTTCTACGCAGGATTTGTG 59.147 41.667 14.33 14.33 43.06 3.33
809 819 4.759693 TCACAATTTCTACGCAGGATTTGT 59.240 37.500 0.00 0.00 0.00 2.83
810 820 5.295431 TCACAATTTCTACGCAGGATTTG 57.705 39.130 0.00 0.00 0.00 2.32
811 821 5.335661 GGTTCACAATTTCTACGCAGGATTT 60.336 40.000 0.00 0.00 0.00 2.17
812 822 4.156008 GGTTCACAATTTCTACGCAGGATT 59.844 41.667 0.00 0.00 0.00 3.01
813 823 3.689649 GGTTCACAATTTCTACGCAGGAT 59.310 43.478 0.00 0.00 0.00 3.24
814 824 3.071479 GGTTCACAATTTCTACGCAGGA 58.929 45.455 0.00 0.00 0.00 3.86
815 825 2.811431 TGGTTCACAATTTCTACGCAGG 59.189 45.455 0.00 0.00 0.00 4.85
816 826 4.393062 AGATGGTTCACAATTTCTACGCAG 59.607 41.667 0.00 0.00 0.00 5.18
817 827 4.154015 CAGATGGTTCACAATTTCTACGCA 59.846 41.667 0.00 0.00 0.00 5.24
818 828 4.651994 CAGATGGTTCACAATTTCTACGC 58.348 43.478 0.00 0.00 0.00 4.42
819 829 4.154015 TGCAGATGGTTCACAATTTCTACG 59.846 41.667 0.00 0.00 0.00 3.51
820 830 5.627499 TGCAGATGGTTCACAATTTCTAC 57.373 39.130 0.00 0.00 0.00 2.59
821 831 5.945191 TGATGCAGATGGTTCACAATTTCTA 59.055 36.000 0.00 0.00 0.00 2.10
822 832 4.768448 TGATGCAGATGGTTCACAATTTCT 59.232 37.500 0.00 0.00 0.00 2.52
823 833 5.063180 TGATGCAGATGGTTCACAATTTC 57.937 39.130 0.00 0.00 0.00 2.17
824 834 5.421056 AGATGATGCAGATGGTTCACAATTT 59.579 36.000 0.00 0.00 0.00 1.82
825 835 4.954202 AGATGATGCAGATGGTTCACAATT 59.046 37.500 0.00 0.00 0.00 2.32
826 836 4.338400 CAGATGATGCAGATGGTTCACAAT 59.662 41.667 0.00 0.00 0.00 2.71
827 837 3.692593 CAGATGATGCAGATGGTTCACAA 59.307 43.478 0.00 0.00 0.00 3.33
828 838 3.054948 TCAGATGATGCAGATGGTTCACA 60.055 43.478 0.00 0.00 0.00 3.58
829 839 3.538591 TCAGATGATGCAGATGGTTCAC 58.461 45.455 0.00 0.00 0.00 3.18
830 840 3.918294 TCAGATGATGCAGATGGTTCA 57.082 42.857 0.00 0.00 0.00 3.18
831 841 5.298527 TGAAATCAGATGATGCAGATGGTTC 59.701 40.000 0.00 0.00 34.49 3.62
832 842 5.198207 TGAAATCAGATGATGCAGATGGTT 58.802 37.500 0.00 0.00 34.49 3.67
833 843 4.788679 TGAAATCAGATGATGCAGATGGT 58.211 39.130 0.00 0.00 34.49 3.55
834 844 5.767816 TTGAAATCAGATGATGCAGATGG 57.232 39.130 0.00 0.00 34.49 3.51
835 845 6.970484 TGATTGAAATCAGATGATGCAGATG 58.030 36.000 1.55 0.00 40.32 2.90
836 846 7.285629 ACTTGATTGAAATCAGATGATGCAGAT 59.714 33.333 5.90 0.00 45.35 2.90
837 847 6.602009 ACTTGATTGAAATCAGATGATGCAGA 59.398 34.615 5.90 0.00 45.35 4.26
838 848 6.693113 CACTTGATTGAAATCAGATGATGCAG 59.307 38.462 5.90 1.81 45.35 4.41
839 849 6.152154 ACACTTGATTGAAATCAGATGATGCA 59.848 34.615 18.28 0.00 45.35 3.96
840 850 6.472486 CACACTTGATTGAAATCAGATGATGC 59.528 38.462 18.28 0.00 45.35 3.91
841 851 6.472486 GCACACTTGATTGAAATCAGATGATG 59.528 38.462 18.28 14.50 45.35 3.07
842 852 6.405508 GGCACACTTGATTGAAATCAGATGAT 60.406 38.462 18.28 0.00 45.35 2.45
843 853 5.106038 GGCACACTTGATTGAAATCAGATGA 60.106 40.000 18.28 1.92 45.35 2.92
844 854 5.100259 GGCACACTTGATTGAAATCAGATG 58.900 41.667 5.90 10.20 45.35 2.90
845 855 4.768448 TGGCACACTTGATTGAAATCAGAT 59.232 37.500 5.90 0.00 45.35 2.90
846 856 4.143543 TGGCACACTTGATTGAAATCAGA 58.856 39.130 5.90 0.00 45.35 3.27
847 857 4.482386 CTGGCACACTTGATTGAAATCAG 58.518 43.478 5.90 4.11 45.35 2.90
848 858 3.256383 CCTGGCACACTTGATTGAAATCA 59.744 43.478 1.55 1.55 43.28 2.57
849 859 3.841643 CCTGGCACACTTGATTGAAATC 58.158 45.455 0.00 0.00 35.97 2.17
850 860 2.028748 GCCTGGCACACTTGATTGAAAT 60.029 45.455 15.17 0.00 0.00 2.17
851 861 1.340889 GCCTGGCACACTTGATTGAAA 59.659 47.619 15.17 0.00 0.00 2.69
852 862 0.961019 GCCTGGCACACTTGATTGAA 59.039 50.000 15.17 0.00 0.00 2.69
853 863 1.236616 CGCCTGGCACACTTGATTGA 61.237 55.000 20.29 0.00 0.00 2.57
854 864 1.210931 CGCCTGGCACACTTGATTG 59.789 57.895 20.29 0.00 0.00 2.67
855 865 1.973281 CCGCCTGGCACACTTGATT 60.973 57.895 20.29 0.00 0.00 2.57
856 866 2.360350 CCGCCTGGCACACTTGAT 60.360 61.111 20.29 0.00 0.00 2.57
866 876 6.744112 TCTTTAATTTAATAATGCCGCCTGG 58.256 36.000 0.00 0.00 38.77 4.45
867 877 8.641499 TTTCTTTAATTTAATAATGCCGCCTG 57.359 30.769 0.00 0.00 0.00 4.85
868 878 9.660180 TTTTTCTTTAATTTAATAATGCCGCCT 57.340 25.926 0.00 0.00 0.00 5.52
925 936 1.208535 AGGGTTTCAGTGTTGACGACA 59.791 47.619 0.00 0.00 35.42 4.35
1035 1049 3.197614 GAGATGGTCTCCACGCGA 58.802 61.111 15.93 0.00 37.55 5.87
1167 1181 0.909623 AGATTGGGGAACGGTGGTAG 59.090 55.000 0.00 0.00 0.00 3.18
1188 1202 0.993470 TATTGGGTTTAGGGGCGTGT 59.007 50.000 0.00 0.00 0.00 4.49
1201 1215 5.539582 TCGAATTTCACGAGTTTATTGGG 57.460 39.130 0.00 0.00 34.85 4.12
1235 1249 2.933906 GGGAAAACGACATCTAATCGCA 59.066 45.455 0.00 0.00 43.46 5.10
1567 1582 4.435518 CGTTCCATAATTCTTGTCGTGGTG 60.436 45.833 0.00 0.00 0.00 4.17
1591 1634 4.272018 GTGCTAGAAATGATGTGTAGCCTG 59.728 45.833 9.05 0.00 36.14 4.85
1651 1724 4.211374 ACAACGATAAGAATTATGGAGCGC 59.789 41.667 0.00 0.00 42.35 5.92
1672 1745 6.610075 ACTATTCCCTCCGTAACTAAAACA 57.390 37.500 0.00 0.00 0.00 2.83
1691 1764 4.202315 TGCAACCACACAGACAACTACTAT 60.202 41.667 0.00 0.00 0.00 2.12
2014 2093 6.769985 CAAAACGGCTTTGATTGGGGACAA 62.770 45.833 6.43 0.00 46.93 3.18
2031 2110 0.865111 TCCACGTCATGAGCAAAACG 59.135 50.000 0.00 0.00 40.77 3.60
2061 2140 3.679083 CGTCCCTCAACTCCTAAACCATC 60.679 52.174 0.00 0.00 0.00 3.51
2062 2141 2.236395 CGTCCCTCAACTCCTAAACCAT 59.764 50.000 0.00 0.00 0.00 3.55
2097 2878 2.534042 TTGGTCCCTGAACAAACCAA 57.466 45.000 1.83 1.83 46.65 3.67
2103 2884 3.020984 GTTCACTTTTGGTCCCTGAACA 58.979 45.455 9.35 0.00 35.59 3.18
2219 3000 6.317391 CCCTAGTTTGAGCTTCTCCTTATTTG 59.683 42.308 0.00 0.00 0.00 2.32
2297 3078 2.365293 TGAGATTATCGCCAAGCAGCTA 59.635 45.455 0.00 0.00 0.00 3.32
2426 3207 6.769512 AGTTATCAAGTTTAGTGAGCCTGAA 58.230 36.000 0.00 0.00 0.00 3.02
2488 3270 1.459209 CACACAAAATCGTCGCTGCTA 59.541 47.619 0.00 0.00 0.00 3.49
2497 3279 3.077229 TCAACTTGCCACACAAAATCG 57.923 42.857 0.00 0.00 37.96 3.34
2551 3333 3.601443 ATCTTCAGGTCCAAGAACTCG 57.399 47.619 0.00 0.00 33.57 4.18
2789 3625 2.012673 GATGATTCAGTGCCCTGTCAC 58.987 52.381 0.00 0.00 39.82 3.67
2807 3643 1.172812 TCGGCCAGATCGACGATGAT 61.173 55.000 16.49 0.21 0.00 2.45
2936 3772 2.671177 CGACTTGTGCGCCTTCAGG 61.671 63.158 4.18 4.90 38.53 3.86
2966 3802 3.934391 CTCGAACACCGGGGAGCAC 62.934 68.421 12.96 0.00 39.14 4.40
2972 3808 1.811266 CATGCTCTCGAACACCGGG 60.811 63.158 6.32 0.00 40.97 5.73
2975 3811 0.716108 CGAACATGCTCTCGAACACC 59.284 55.000 6.60 0.00 37.23 4.16
3071 3907 2.262603 GTCCCGTACACGAACCCC 59.737 66.667 2.76 0.00 43.02 4.95
3140 3977 2.038837 GCCCAGCCCGTACTTGTTC 61.039 63.158 0.00 0.00 0.00 3.18
3455 4298 3.623510 GGGCTATTCTTTCCACTCTTTCG 59.376 47.826 0.00 0.00 0.00 3.46
3603 4458 2.434359 GCCCACACCAGTAGCGAC 60.434 66.667 0.00 0.00 0.00 5.19
3622 4477 3.283259 TTACACACCATTCACACACCA 57.717 42.857 0.00 0.00 0.00 4.17
3630 4485 6.791303 TCACAAACTTCTTTACACACCATTC 58.209 36.000 0.00 0.00 0.00 2.67
3631 4486 6.183360 CCTCACAAACTTCTTTACACACCATT 60.183 38.462 0.00 0.00 0.00 3.16
3632 4487 5.299279 CCTCACAAACTTCTTTACACACCAT 59.701 40.000 0.00 0.00 0.00 3.55
3633 4488 4.638421 CCTCACAAACTTCTTTACACACCA 59.362 41.667 0.00 0.00 0.00 4.17
3666 4521 2.846193 TGGACAACAGAGCAAAGGTAC 58.154 47.619 0.00 0.00 0.00 3.34
3694 4563 2.537633 TACGTACCAGGGTTCAGGAT 57.462 50.000 0.00 0.00 0.00 3.24
3757 4631 3.233980 AGACCAGGCACAGCACGA 61.234 61.111 0.00 0.00 0.00 4.35
3776 4652 6.684538 ACTACTACCAGGACCAATTCTAGAT 58.315 40.000 0.00 0.00 0.00 1.98
3798 4674 4.796231 CCGCGCGCCTTGTCTACT 62.796 66.667 27.36 0.00 0.00 2.57
3799 4675 3.688475 TACCGCGCGCCTTGTCTAC 62.688 63.158 27.36 0.00 0.00 2.59
3800 4676 3.405592 CTACCGCGCGCCTTGTCTA 62.406 63.158 27.36 5.48 0.00 2.59
3820 4756 2.359975 GGCGAAACCCAGACCAGG 60.360 66.667 0.00 0.00 0.00 4.45
3916 4908 7.012327 TCCATTTTTATGCATTTCTCGGACTAG 59.988 37.037 3.54 0.00 0.00 2.57
3917 4909 6.826231 TCCATTTTTATGCATTTCTCGGACTA 59.174 34.615 3.54 0.00 0.00 2.59
3918 4910 5.652014 TCCATTTTTATGCATTTCTCGGACT 59.348 36.000 3.54 0.00 0.00 3.85
3919 4911 5.890334 TCCATTTTTATGCATTTCTCGGAC 58.110 37.500 3.54 0.00 0.00 4.79
3920 4912 6.096705 ACATCCATTTTTATGCATTTCTCGGA 59.903 34.615 3.54 5.20 0.00 4.55
3921 4913 6.275335 ACATCCATTTTTATGCATTTCTCGG 58.725 36.000 3.54 0.00 0.00 4.63
3922 4914 9.121517 GATACATCCATTTTTATGCATTTCTCG 57.878 33.333 3.54 0.00 0.00 4.04
3960 4952 9.915629 GAAGGAATGAATGTATCTAGACGTATT 57.084 33.333 0.00 0.00 0.00 1.89
3961 4953 9.078990 TGAAGGAATGAATGTATCTAGACGTAT 57.921 33.333 0.00 0.00 0.00 3.06
3962 4954 8.459911 TGAAGGAATGAATGTATCTAGACGTA 57.540 34.615 0.00 0.00 0.00 3.57
3963 4955 7.348080 TGAAGGAATGAATGTATCTAGACGT 57.652 36.000 0.00 0.00 0.00 4.34
3964 4956 8.824159 AATGAAGGAATGAATGTATCTAGACG 57.176 34.615 0.00 0.00 0.00 4.18
3965 4957 9.213799 GGAATGAAGGAATGAATGTATCTAGAC 57.786 37.037 0.00 0.00 0.00 2.59
3966 4958 9.163894 AGGAATGAAGGAATGAATGTATCTAGA 57.836 33.333 0.00 0.00 0.00 2.43
3967 4959 9.434420 GAGGAATGAAGGAATGAATGTATCTAG 57.566 37.037 0.00 0.00 0.00 2.43
3968 4960 8.378565 GGAGGAATGAAGGAATGAATGTATCTA 58.621 37.037 0.00 0.00 0.00 1.98
3969 4961 7.230027 GGAGGAATGAAGGAATGAATGTATCT 58.770 38.462 0.00 0.00 0.00 1.98
3970 4962 6.148480 CGGAGGAATGAAGGAATGAATGTATC 59.852 42.308 0.00 0.00 0.00 2.24
3971 4963 6.000219 CGGAGGAATGAAGGAATGAATGTAT 59.000 40.000 0.00 0.00 0.00 2.29
3972 4964 5.130311 TCGGAGGAATGAAGGAATGAATGTA 59.870 40.000 0.00 0.00 0.00 2.29
3973 4965 4.080356 TCGGAGGAATGAAGGAATGAATGT 60.080 41.667 0.00 0.00 0.00 2.71
3974 4966 4.274459 GTCGGAGGAATGAAGGAATGAATG 59.726 45.833 0.00 0.00 0.00 2.67
3975 4967 4.080356 TGTCGGAGGAATGAAGGAATGAAT 60.080 41.667 0.00 0.00 0.00 2.57
3976 4968 3.263170 TGTCGGAGGAATGAAGGAATGAA 59.737 43.478 0.00 0.00 0.00 2.57
3977 4969 2.837591 TGTCGGAGGAATGAAGGAATGA 59.162 45.455 0.00 0.00 0.00 2.57
3978 4970 3.266510 TGTCGGAGGAATGAAGGAATG 57.733 47.619 0.00 0.00 0.00 2.67
3979 4971 3.264450 ACTTGTCGGAGGAATGAAGGAAT 59.736 43.478 0.00 0.00 0.00 3.01
3980 4972 2.637872 ACTTGTCGGAGGAATGAAGGAA 59.362 45.455 0.00 0.00 0.00 3.36
3981 4973 2.257207 ACTTGTCGGAGGAATGAAGGA 58.743 47.619 0.00 0.00 0.00 3.36
3982 4974 2.770164 ACTTGTCGGAGGAATGAAGG 57.230 50.000 0.00 0.00 0.00 3.46
3983 4975 5.294552 GGAAATACTTGTCGGAGGAATGAAG 59.705 44.000 0.00 0.00 0.00 3.02
3984 4976 5.183228 GGAAATACTTGTCGGAGGAATGAA 58.817 41.667 0.00 0.00 0.00 2.57
3985 4977 4.679639 CGGAAATACTTGTCGGAGGAATGA 60.680 45.833 0.00 0.00 0.00 2.57
3986 4978 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
3987 4979 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
3988 4980 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
3989 4981 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
3990 4982 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
3991 4983 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3992 4984 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3993 4985 1.135315 TCGTCCGGAAATACTTGTCGG 60.135 52.381 5.23 0.00 41.80 4.79
3994 4986 2.267188 TCGTCCGGAAATACTTGTCG 57.733 50.000 5.23 1.58 0.00 4.35
3995 4987 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
3996 4988 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
3997 4989 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
3998 4990 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
3999 4991 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
4000 4992 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
4001 4993 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
4002 4994 1.755380 CTACTCCCTTCGTCCGGAAAT 59.245 52.381 5.23 0.00 33.34 2.17
4003 4995 1.180029 CTACTCCCTTCGTCCGGAAA 58.820 55.000 5.23 0.00 33.34 3.13
4004 4996 0.682209 CCTACTCCCTTCGTCCGGAA 60.682 60.000 5.23 0.00 0.00 4.30
4005 4997 1.077212 CCTACTCCCTTCGTCCGGA 60.077 63.158 0.00 0.00 0.00 5.14
4006 4998 0.682209 TTCCTACTCCCTTCGTCCGG 60.682 60.000 0.00 0.00 0.00 5.14
4007 4999 1.180029 TTTCCTACTCCCTTCGTCCG 58.820 55.000 0.00 0.00 0.00 4.79
4008 5000 3.908643 AATTTCCTACTCCCTTCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
4009 5001 9.022884 AGTATATAATTTCCTACTCCCTTCGTC 57.977 37.037 0.00 0.00 0.00 4.20
4010 5002 8.953223 AGTATATAATTTCCTACTCCCTTCGT 57.047 34.615 0.00 0.00 0.00 3.85
4017 5009 9.536510 ACAGAGGGAGTATATAATTTCCTACTC 57.463 37.037 6.17 10.34 39.44 2.59
4034 5026 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
4100 5101 3.286353 GCTACTACTCCCTCCGTAAACT 58.714 50.000 0.00 0.00 0.00 2.66
4118 5124 2.806244 GGCAACTTCTGTTTCTTCGCTA 59.194 45.455 0.00 0.00 33.52 4.26
4119 5125 1.604278 GGCAACTTCTGTTTCTTCGCT 59.396 47.619 0.00 0.00 33.52 4.93
4120 5126 1.333619 TGGCAACTTCTGTTTCTTCGC 59.666 47.619 0.00 0.00 33.52 4.70
4121 5127 3.003689 ACATGGCAACTTCTGTTTCTTCG 59.996 43.478 0.00 0.00 33.52 3.79
4125 5131 3.316308 ACAGACATGGCAACTTCTGTTTC 59.684 43.478 18.22 0.00 44.33 2.78
4126 5132 3.290710 ACAGACATGGCAACTTCTGTTT 58.709 40.909 18.22 0.23 44.33 2.83
4127 5133 2.936202 ACAGACATGGCAACTTCTGTT 58.064 42.857 18.22 7.49 44.33 3.16
4128 5134 2.645838 ACAGACATGGCAACTTCTGT 57.354 45.000 18.22 18.22 42.96 3.41
4129 5135 2.227388 GGAACAGACATGGCAACTTCTG 59.773 50.000 17.20 17.20 41.56 3.02
4130 5136 2.158623 TGGAACAGACATGGCAACTTCT 60.159 45.455 0.00 0.00 37.61 2.85
4131 5137 2.229792 TGGAACAGACATGGCAACTTC 58.770 47.619 0.00 0.00 37.61 3.01
4165 5171 1.742761 CCGACTCTTCTGGTACGGTA 58.257 55.000 0.00 0.00 36.38 4.02
4166 5172 0.251077 ACCGACTCTTCTGGTACGGT 60.251 55.000 0.00 0.00 46.69 4.83
4167 5173 0.450983 GACCGACTCTTCTGGTACGG 59.549 60.000 0.00 0.00 44.77 4.02
4168 5174 0.096628 CGACCGACTCTTCTGGTACG 59.903 60.000 0.00 0.00 35.75 3.67
4173 5179 0.039074 ACAAGCGACCGACTCTTCTG 60.039 55.000 0.00 0.00 0.00 3.02
4240 5246 2.011122 TCCTTCCATCCGTCTATCCC 57.989 55.000 0.00 0.00 0.00 3.85
4249 5255 0.035439 TTCGCACCTTCCTTCCATCC 60.035 55.000 0.00 0.00 0.00 3.51
4269 5290 1.560004 TTCGCTTCGCTGTGCTCTTG 61.560 55.000 0.00 0.00 0.00 3.02
4278 5299 0.041576 GAAACCGTTTTCGCTTCGCT 60.042 50.000 0.00 0.00 42.58 4.93
4307 5331 4.788100 CACAAACGTTCTGTCAGTTTTCAG 59.212 41.667 0.00 0.00 36.12 3.02
4318 5342 1.070134 TCCTCTCCCACAAACGTTCTG 59.930 52.381 0.00 5.10 0.00 3.02
4323 5352 1.257743 TCTCTCCTCTCCCACAAACG 58.742 55.000 0.00 0.00 0.00 3.60
4328 5357 1.028905 CACGATCTCTCCTCTCCCAC 58.971 60.000 0.00 0.00 0.00 4.61
4363 5396 4.841813 TCTTCCAGTTTGACATGGTAGGTA 59.158 41.667 0.00 0.00 35.37 3.08
4364 5397 3.650942 TCTTCCAGTTTGACATGGTAGGT 59.349 43.478 0.00 0.00 35.37 3.08
4365 5398 4.003648 GTCTTCCAGTTTGACATGGTAGG 58.996 47.826 0.00 0.00 35.37 3.18
4366 5399 3.679980 CGTCTTCCAGTTTGACATGGTAG 59.320 47.826 0.00 0.00 37.84 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.