Multiple sequence alignment - TraesCS7B01G226500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G226500 chr7B 100.000 3197 0 0 577 3773 426968389 426971585 0.000000e+00 5904.0
1 TraesCS7B01G226500 chr7B 100.000 337 0 0 1 337 426967813 426968149 1.150000e-174 623.0
2 TraesCS7B01G226500 chr7B 99.099 333 3 0 1 333 606381216 606381548 1.940000e-167 599.0
3 TraesCS7B01G226500 chr7D 93.521 2562 95 36 842 3367 412757041 412759567 0.000000e+00 3746.0
4 TraesCS7B01G226500 chr7D 88.889 108 12 0 3567 3674 140326124 140326017 2.360000e-27 134.0
5 TraesCS7B01G226500 chr7A 91.913 2263 121 27 842 3051 473916954 473919207 0.000000e+00 3109.0
6 TraesCS7B01G226500 chr7A 92.105 114 8 1 3659 3772 473919650 473919762 3.900000e-35 159.0
7 TraesCS7B01G226500 chr4D 90.349 487 24 5 1017 1490 434801513 434801989 5.350000e-173 617.0
8 TraesCS7B01G226500 chr4D 91.209 91 8 0 3568 3658 1652803 1652893 1.420000e-24 124.0
9 TraesCS7B01G226500 chr4D 88.119 101 12 0 3565 3665 507889160 507889260 1.840000e-23 121.0
10 TraesCS7B01G226500 chr4D 87.629 97 12 0 3568 3664 298252663 298252567 3.080000e-21 113.0
11 TraesCS7B01G226500 chr4D 88.172 93 10 1 3566 3658 110076279 110076188 3.980000e-20 110.0
12 TraesCS7B01G226500 chr4D 84.211 95 11 3 3568 3658 164011135 164011041 5.190000e-14 89.8
13 TraesCS7B01G226500 chr3B 99.405 336 2 0 1 336 142872482 142872147 8.960000e-171 610.0
14 TraesCS7B01G226500 chr3B 97.653 213 5 0 593 805 47250241 47250453 2.140000e-97 366.0
15 TraesCS7B01G226500 chr3B 89.423 104 10 1 3565 3668 74292872 74292770 3.060000e-26 130.0
16 TraesCS7B01G226500 chr6B 99.112 338 2 1 1 337 134385476 134385139 1.160000e-169 606.0
17 TraesCS7B01G226500 chr6B 99.099 333 3 0 1 333 599853112 599852780 1.940000e-167 599.0
18 TraesCS7B01G226500 chr6B 98.113 212 3 1 593 804 599873258 599873468 5.950000e-98 368.0
19 TraesCS7B01G226500 chr6B 97.642 212 5 0 593 804 134385310 134385099 7.700000e-97 364.0
20 TraesCS7B01G226500 chr6B 91.667 96 8 0 3562 3657 169481963 169482058 2.360000e-27 134.0
21 TraesCS7B01G226500 chr6B 87.736 106 13 0 3563 3668 160912381 160912486 1.420000e-24 124.0
22 TraesCS7B01G226500 chr1A 99.112 338 2 1 1 337 579987806 579988143 1.160000e-169 606.0
23 TraesCS7B01G226500 chr1A 99.112 338 2 1 1 337 579994362 579994699 1.160000e-169 606.0
24 TraesCS7B01G226500 chr1A 99.099 333 3 0 1 333 579995664 579995996 1.940000e-167 599.0
25 TraesCS7B01G226500 chr1A 97.642 212 5 0 593 804 579987972 579988183 7.700000e-97 364.0
26 TraesCS7B01G226500 chr1A 97.642 212 5 0 593 804 579994528 579994739 7.700000e-97 364.0
27 TraesCS7B01G226500 chr1A 87.156 109 12 2 3566 3674 264217590 264217484 5.120000e-24 122.0
28 TraesCS7B01G226500 chr6A 98.813 337 4 0 1 337 577742240 577741904 5.390000e-168 601.0
29 TraesCS7B01G226500 chr6A 98.592 213 3 0 593 805 577739900 577739688 9.890000e-101 377.0
30 TraesCS7B01G226500 chr6A 98.122 213 3 1 593 805 577742074 577741863 1.660000e-98 370.0
31 TraesCS7B01G226500 chr6A 96.053 228 6 2 577 804 577737433 577737209 5.950000e-98 368.0
32 TraesCS7B01G226500 chr2A 98.817 338 3 1 1 337 98892903 98893240 5.390000e-168 601.0
33 TraesCS7B01G226500 chr2A 90.291 103 9 1 3566 3667 195072237 195072339 2.360000e-27 134.0
34 TraesCS7B01G226500 chr4A 88.542 480 32 5 1017 1483 193109510 193109041 9.150000e-156 560.0
35 TraesCS7B01G226500 chr4A 88.333 480 33 5 1017 1483 585784034 585784503 4.260000e-154 555.0
36 TraesCS7B01G226500 chr4A 96.507 229 5 2 577 805 709913266 709913041 3.560000e-100 375.0
37 TraesCS7B01G226500 chrUn 93.814 97 6 0 3568 3664 45996764 45996668 3.040000e-31 147.0
38 TraesCS7B01G226500 chrUn 84.158 101 12 3 3568 3664 103106024 103105924 1.120000e-15 95.3
39 TraesCS7B01G226500 chrUn 84.000 100 8 5 3566 3664 95593972 95593880 5.190000e-14 89.8
40 TraesCS7B01G226500 chrUn 83.333 90 9 6 3568 3654 332851780 332851694 1.120000e-10 78.7
41 TraesCS7B01G226500 chr4B 92.233 103 8 0 3556 3658 621424684 621424786 3.040000e-31 147.0
42 TraesCS7B01G226500 chr3D 93.617 94 6 0 3564 3657 582933396 582933489 1.410000e-29 141.0
43 TraesCS7B01G226500 chr3D 87.826 115 12 2 3547 3659 605264154 605264268 2.360000e-27 134.0
44 TraesCS7B01G226500 chr3D 91.489 94 8 0 3564 3657 582927860 582927953 3.060000e-26 130.0
45 TraesCS7B01G226500 chr1B 88.462 104 11 1 3568 3670 572205775 572205672 1.420000e-24 124.0
46 TraesCS7B01G226500 chr5D 89.109 101 8 2 3567 3664 287787636 287787536 5.120000e-24 122.0
47 TraesCS7B01G226500 chr5D 88.660 97 11 0 3568 3664 119492170 119492074 6.620000e-23 119.0
48 TraesCS7B01G226500 chr1D 87.629 97 12 0 3568 3664 490104160 490104064 3.080000e-21 113.0
49 TraesCS7B01G226500 chr6D 86.869 99 11 2 3568 3664 14086271 14086173 3.980000e-20 110.0
50 TraesCS7B01G226500 chr6D 86.735 98 5 6 3568 3658 20087497 20087593 6.670000e-18 102.0
51 TraesCS7B01G226500 chr6D 81.188 101 13 6 3567 3664 104983082 104983179 4.040000e-10 76.8
52 TraesCS7B01G226500 chr6D 88.889 63 4 1 3568 3630 276835654 276835713 1.450000e-09 75.0
53 TraesCS7B01G226500 chr6D 100.000 35 0 0 3568 3602 58690819 58690853 8.750000e-07 65.8
54 TraesCS7B01G226500 chr6D 84.615 65 10 0 3593 3657 470963807 470963743 8.750000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G226500 chr7B 426967813 426971585 3772 False 3263.5 5904 100.000000 1 3773 2 chr7B.!!$F2 3772
1 TraesCS7B01G226500 chr7D 412757041 412759567 2526 False 3746.0 3746 93.521000 842 3367 1 chr7D.!!$F1 2525
2 TraesCS7B01G226500 chr7A 473916954 473919762 2808 False 1634.0 3109 92.009000 842 3772 2 chr7A.!!$F1 2930
3 TraesCS7B01G226500 chr1A 579994362 579995996 1634 False 523.0 606 98.617667 1 804 3 chr1A.!!$F2 803
4 TraesCS7B01G226500 chr6A 577737209 577742240 5031 True 429.0 601 97.895000 1 805 4 chr6A.!!$R1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 5288 1.533625 TGGAAATCAAAGGAGGTGCG 58.466 50.000 0.0 0.0 0.0 5.34 F
1697 6175 1.131883 AGTAATCGTCGTCCCTGTTCG 59.868 52.381 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 7124 1.123928 AGCTACGCATAAGGAAGGCT 58.876 50.0 0.0 0.0 0.0 4.58 R
3271 7820 0.107456 GTCCATGCATCACGAGGGAT 59.893 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 273 4.049186 CAGACGAGAAAGAGAAAAACCGA 58.951 43.478 0.00 0.00 0.00 4.69
698 4839 4.049186 CAGACGAGAAAGAGAAAAACCGA 58.951 43.478 0.00 0.00 0.00 4.69
787 5235 4.951715 GGGGGACTATTTAACCAATTCGTT 59.048 41.667 0.00 0.00 0.00 3.85
804 5252 7.928706 CCAATTCGTTCATTAGGAGTAGAGATT 59.071 37.037 0.00 0.00 0.00 2.40
805 5253 9.967346 CAATTCGTTCATTAGGAGTAGAGATTA 57.033 33.333 0.00 0.00 0.00 1.75
808 5256 8.975663 TCGTTCATTAGGAGTAGAGATTAAGA 57.024 34.615 0.00 0.00 0.00 2.10
809 5257 9.058174 TCGTTCATTAGGAGTAGAGATTAAGAG 57.942 37.037 0.00 0.00 0.00 2.85
810 5258 8.842280 CGTTCATTAGGAGTAGAGATTAAGAGT 58.158 37.037 0.00 0.00 0.00 3.24
837 5285 8.953665 AGAGATATATTGGAAATCAAAGGAGGT 58.046 33.333 0.00 0.00 39.05 3.85
838 5286 8.930846 AGATATATTGGAAATCAAAGGAGGTG 57.069 34.615 0.00 0.00 39.05 4.00
839 5287 5.859205 ATATTGGAAATCAAAGGAGGTGC 57.141 39.130 0.00 0.00 39.05 5.01
840 5288 1.533625 TGGAAATCAAAGGAGGTGCG 58.466 50.000 0.00 0.00 0.00 5.34
1435 5899 1.225704 CCACTGCCTCCTCATTCCC 59.774 63.158 0.00 0.00 0.00 3.97
1439 5903 2.190578 GCCTCCTCATTCCCGTGG 59.809 66.667 0.00 0.00 0.00 4.94
1448 5912 3.181478 CCTCATTCCCGTGGACTAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
1449 5913 3.433343 TCATTCCCGTGGACTAGTAACA 58.567 45.455 0.00 0.00 0.00 2.41
1450 5914 3.833650 TCATTCCCGTGGACTAGTAACAA 59.166 43.478 0.00 0.00 0.00 2.83
1451 5915 4.468510 TCATTCCCGTGGACTAGTAACAAT 59.531 41.667 0.00 0.00 0.00 2.71
1452 5916 4.460948 TTCCCGTGGACTAGTAACAATC 57.539 45.455 0.00 0.00 0.00 2.67
1462 5929 5.204409 ACTAGTAACAATCGAACACCACA 57.796 39.130 0.00 0.00 0.00 4.17
1463 5930 4.986659 ACTAGTAACAATCGAACACCACAC 59.013 41.667 0.00 0.00 0.00 3.82
1629 6104 3.179443 TCCTGAATCAACCGCTGTATC 57.821 47.619 0.00 0.00 0.00 2.24
1697 6175 1.131883 AGTAATCGTCGTCCCTGTTCG 59.868 52.381 0.00 0.00 0.00 3.95
1892 6373 2.291411 TGGCCTTCGGACTTCTAGTACT 60.291 50.000 3.32 0.00 0.00 2.73
1947 6429 7.709269 TTAATGTCATACTAGTTCCGAATGC 57.291 36.000 0.00 0.00 0.00 3.56
1952 6434 4.343814 TCATACTAGTTCCGAATGCCATGA 59.656 41.667 0.00 0.00 0.00 3.07
1965 6447 4.574674 ATGCCATGATATACCGACCATT 57.425 40.909 0.00 0.00 0.00 3.16
2011 6495 7.596749 TTCTGAGCTTAGCAGTTTTATGTAC 57.403 36.000 7.07 0.00 34.98 2.90
2083 6567 8.792830 TCTGTAAAGCTTATCTAATTTGCAGT 57.207 30.769 0.00 0.00 42.41 4.40
2124 6608 6.515272 ACTCCTGCATAAATGTTGGTTTAG 57.485 37.500 0.00 0.00 0.00 1.85
2178 6664 7.893124 TCTCTCCGGTTTCTAATTATGTACT 57.107 36.000 0.00 0.00 0.00 2.73
2237 6723 6.918022 GCTATTGTGCCTGTTATTTTACATCC 59.082 38.462 0.00 0.00 0.00 3.51
2238 6724 6.849085 ATTGTGCCTGTTATTTTACATCCA 57.151 33.333 0.00 0.00 0.00 3.41
2240 6726 7.946381 TTGTGCCTGTTATTTTACATCCATA 57.054 32.000 0.00 0.00 0.00 2.74
2345 6831 2.488204 TTCCATTCCGATGCAAGTCA 57.512 45.000 0.00 0.00 31.67 3.41
2429 6916 5.647589 TGCTTACCTGATGTACTTAACTCG 58.352 41.667 0.00 0.00 0.00 4.18
2609 7099 1.783711 GCGCATAGTCAGTCTCATTCG 59.216 52.381 0.30 0.00 0.00 3.34
2633 7124 0.615331 GTCAGTCTGCATCCCCTTCA 59.385 55.000 0.00 0.00 0.00 3.02
2650 7141 2.890808 TCAGCCTTCCTTATGCGTAG 57.109 50.000 0.00 0.00 0.00 3.51
2817 7319 0.535335 GGATCTGTTGTGCGGTAGGA 59.465 55.000 0.00 0.00 0.00 2.94
2868 7371 8.062065 AGTTTGATTGAACAGTAAAGTGGAAA 57.938 30.769 0.00 0.00 31.94 3.13
2905 7408 3.469899 TTTTGATTTGATGGTCTCGCG 57.530 42.857 0.00 0.00 0.00 5.87
2917 7420 0.039437 GTCTCGCGTTTGGTCTCTGA 60.039 55.000 5.77 0.00 0.00 3.27
2960 7463 2.609459 ACATGTATTAGCTGCTGTTCGC 59.391 45.455 13.43 0.00 39.77 4.70
2967 7470 1.533625 AGCTGCTGTTCGCCAAATTA 58.466 45.000 0.00 0.00 38.05 1.40
2969 7472 2.095059 AGCTGCTGTTCGCCAAATTAAG 60.095 45.455 0.00 0.00 38.05 1.85
2972 7475 1.816224 GCTGTTCGCCAAATTAAGGGA 59.184 47.619 0.00 0.00 0.00 4.20
2973 7476 2.427095 GCTGTTCGCCAAATTAAGGGAT 59.573 45.455 0.00 0.00 0.00 3.85
2985 7488 8.637986 GCCAAATTAAGGGATATATGTTTGTGA 58.362 33.333 0.00 0.00 0.00 3.58
3058 7568 7.440856 TCGTATATGCATTGCTTTGTCATCTAA 59.559 33.333 3.54 0.00 0.00 2.10
3062 7572 6.330004 TGCATTGCTTTGTCATCTAAAGAA 57.670 33.333 10.49 0.00 37.33 2.52
3089 7636 4.564821 CCTCTCCAAAACCTCGGTTTCATA 60.565 45.833 13.97 2.86 46.22 2.15
3096 7643 6.373216 CCAAAACCTCGGTTTCATATGTTCTA 59.627 38.462 13.97 0.00 46.22 2.10
3097 7644 7.094549 CCAAAACCTCGGTTTCATATGTTCTAA 60.095 37.037 13.97 0.00 46.22 2.10
3098 7645 6.980051 AACCTCGGTTTCATATGTTCTAAC 57.020 37.500 1.90 3.91 34.22 2.34
3099 7646 6.295719 ACCTCGGTTTCATATGTTCTAACT 57.704 37.500 1.90 0.00 0.00 2.24
3100 7647 6.708285 ACCTCGGTTTCATATGTTCTAACTT 58.292 36.000 1.90 0.00 0.00 2.66
3101 7648 6.817140 ACCTCGGTTTCATATGTTCTAACTTC 59.183 38.462 1.90 0.00 0.00 3.01
3102 7649 7.042335 CCTCGGTTTCATATGTTCTAACTTCT 58.958 38.462 1.90 0.00 0.00 2.85
3103 7650 8.195436 CCTCGGTTTCATATGTTCTAACTTCTA 58.805 37.037 1.90 0.00 0.00 2.10
3104 7651 8.922058 TCGGTTTCATATGTTCTAACTTCTAC 57.078 34.615 1.90 0.00 0.00 2.59
3105 7652 8.746530 TCGGTTTCATATGTTCTAACTTCTACT 58.253 33.333 1.90 0.00 0.00 2.57
3152 7700 4.280174 AGTTACTTGAGACGGCAGTTTAGA 59.720 41.667 0.00 0.00 0.00 2.10
3158 7706 3.007506 TGAGACGGCAGTTTAGATTGGAA 59.992 43.478 0.00 0.00 0.00 3.53
3191 7740 1.268999 TGGTTTGAGTTGATGTTGCGC 60.269 47.619 0.00 0.00 0.00 6.09
3234 7783 0.034337 GCACGTCACTCCACCCTTTA 59.966 55.000 0.00 0.00 0.00 1.85
3238 7787 3.188460 CACGTCACTCCACCCTTTATTTG 59.812 47.826 0.00 0.00 0.00 2.32
3246 7795 5.777732 ACTCCACCCTTTATTTGTTTATGCA 59.222 36.000 0.00 0.00 0.00 3.96
3272 7821 3.411517 CTCTCACCCCCGGCCAAT 61.412 66.667 2.24 0.00 0.00 3.16
3307 7856 3.391382 CGTCCTCGGGCCTCCTTT 61.391 66.667 0.84 0.00 0.00 3.11
3309 7858 2.687566 TCCTCGGGCCTCCTTTCC 60.688 66.667 0.84 0.00 0.00 3.13
3310 7859 2.689034 CCTCGGGCCTCCTTTCCT 60.689 66.667 0.84 0.00 0.00 3.36
3313 7862 3.798511 CGGGCCTCCTTTCCTCCC 61.799 72.222 0.84 0.00 0.00 4.30
3315 7864 2.379459 GGGCCTCCTTTCCTCCCTC 61.379 68.421 0.84 0.00 34.19 4.30
3316 7865 2.736826 GGCCTCCTTTCCTCCCTCG 61.737 68.421 0.00 0.00 0.00 4.63
3318 7867 1.687493 CCTCCTTTCCTCCCTCGCT 60.687 63.158 0.00 0.00 0.00 4.93
3353 7902 4.225573 CTGATCTCTCCTTTCCTCATCCT 58.774 47.826 0.00 0.00 0.00 3.24
3385 7936 2.909140 CCCCCTTCTGTCTCTCCTC 58.091 63.158 0.00 0.00 0.00 3.71
3398 7949 3.562557 GTCTCTCCTCTGATCTACCGTTC 59.437 52.174 0.00 0.00 0.00 3.95
3400 7951 3.546724 TCTCCTCTGATCTACCGTTCTG 58.453 50.000 0.00 0.00 0.00 3.02
3402 7953 3.280295 TCCTCTGATCTACCGTTCTGTC 58.720 50.000 0.00 0.00 0.00 3.51
3417 7968 3.388552 TCTGTCCCTGATCAAGCTCTA 57.611 47.619 0.00 0.00 0.00 2.43
3439 8006 2.507407 TGACCCTCCACCTTATTTGC 57.493 50.000 0.00 0.00 0.00 3.68
3443 8010 1.106285 CCTCCACCTTATTTGCCAGC 58.894 55.000 0.00 0.00 0.00 4.85
3464 8034 1.210722 CCCTTCCTCCTTGCCTACTTC 59.789 57.143 0.00 0.00 0.00 3.01
3467 8037 2.930109 TCCTCCTTGCCTACTTCTCT 57.070 50.000 0.00 0.00 0.00 3.10
3485 8055 1.133325 TCTACTGCTCATCTCCTCCCC 60.133 57.143 0.00 0.00 0.00 4.81
3487 8057 0.252881 ACTGCTCATCTCCTCCCCAA 60.253 55.000 0.00 0.00 0.00 4.12
3525 8095 1.589716 GCGCCCTGAGCACAAAATCT 61.590 55.000 0.00 0.00 44.04 2.40
3533 8103 5.507315 CCCTGAGCACAAAATCTAAACGTTT 60.507 40.000 18.90 18.90 0.00 3.60
3542 8112 5.874895 AAATCTAAACGTTTGCTCCCTAC 57.125 39.130 23.46 0.00 0.00 3.18
3543 8113 4.820894 ATCTAAACGTTTGCTCCCTACT 57.179 40.909 23.46 0.00 0.00 2.57
3556 8139 4.202673 TGCTCCCTACTTTTCCAAGGAAAT 60.203 41.667 14.54 4.28 42.71 2.17
3572 8155 9.020731 TCCAAGGAAATAGAAAACAAATACTCC 57.979 33.333 0.00 0.00 0.00 3.85
3574 8157 9.025041 CAAGGAAATAGAAAACAAATACTCCCT 57.975 33.333 0.00 0.00 0.00 4.20
3575 8158 8.809468 AGGAAATAGAAAACAAATACTCCCTC 57.191 34.615 0.00 0.00 0.00 4.30
3576 8159 7.834681 AGGAAATAGAAAACAAATACTCCCTCC 59.165 37.037 0.00 0.00 0.00 4.30
3577 8160 7.201705 GGAAATAGAAAACAAATACTCCCTCCG 60.202 40.741 0.00 0.00 0.00 4.63
3578 8161 4.635699 AGAAAACAAATACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
3579 8162 4.981812 AGAAAACAAATACTCCCTCCGTT 58.018 39.130 0.00 0.00 0.00 4.44
3580 8163 5.382616 AGAAAACAAATACTCCCTCCGTTT 58.617 37.500 0.00 0.00 0.00 3.60
3581 8164 5.472478 AGAAAACAAATACTCCCTCCGTTTC 59.528 40.000 0.00 0.00 0.00 2.78
3582 8165 4.360951 AACAAATACTCCCTCCGTTTCA 57.639 40.909 0.00 0.00 0.00 2.69
3583 8166 4.360951 ACAAATACTCCCTCCGTTTCAA 57.639 40.909 0.00 0.00 0.00 2.69
3584 8167 4.721132 ACAAATACTCCCTCCGTTTCAAA 58.279 39.130 0.00 0.00 0.00 2.69
3585 8168 5.134661 ACAAATACTCCCTCCGTTTCAAAA 58.865 37.500 0.00 0.00 0.00 2.44
3586 8169 5.773176 ACAAATACTCCCTCCGTTTCAAAAT 59.227 36.000 0.00 0.00 0.00 1.82
3587 8170 6.943718 ACAAATACTCCCTCCGTTTCAAAATA 59.056 34.615 0.00 0.00 0.00 1.40
3588 8171 7.449086 ACAAATACTCCCTCCGTTTCAAAATAA 59.551 33.333 0.00 0.00 0.00 1.40
3589 8172 7.625828 AATACTCCCTCCGTTTCAAAATAAG 57.374 36.000 0.00 0.00 0.00 1.73
3590 8173 4.981812 ACTCCCTCCGTTTCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
3591 8174 4.760204 ACTCCCTCCGTTTCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
3592 8175 4.721132 TCCCTCCGTTTCAAAATAAGTGT 58.279 39.130 0.00 0.00 0.00 3.55
3593 8176 4.758165 TCCCTCCGTTTCAAAATAAGTGTC 59.242 41.667 0.00 0.00 0.00 3.67
3594 8177 4.760204 CCCTCCGTTTCAAAATAAGTGTCT 59.240 41.667 0.00 0.00 0.00 3.41
3595 8178 5.106673 CCCTCCGTTTCAAAATAAGTGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
3596 8179 5.468746 CCTCCGTTTCAAAATAAGTGTCTCA 59.531 40.000 0.00 0.00 0.00 3.27
3597 8180 6.017440 CCTCCGTTTCAAAATAAGTGTCTCAA 60.017 38.462 0.00 0.00 0.00 3.02
3598 8181 6.721321 TCCGTTTCAAAATAAGTGTCTCAAC 58.279 36.000 0.00 0.00 0.00 3.18
3599 8182 6.540914 TCCGTTTCAAAATAAGTGTCTCAACT 59.459 34.615 0.00 0.00 0.00 3.16
3600 8183 7.066525 TCCGTTTCAAAATAAGTGTCTCAACTT 59.933 33.333 0.00 0.00 42.89 2.66
3601 8184 7.700656 CCGTTTCAAAATAAGTGTCTCAACTTT 59.299 33.333 0.00 0.00 40.77 2.66
3602 8185 8.523464 CGTTTCAAAATAAGTGTCTCAACTTTG 58.477 33.333 0.00 0.00 40.77 2.77
3603 8186 9.353999 GTTTCAAAATAAGTGTCTCAACTTTGT 57.646 29.630 0.00 0.00 40.77 2.83
3605 8188 9.997482 TTCAAAATAAGTGTCTCAACTTTGTAC 57.003 29.630 0.00 0.00 40.77 2.90
3606 8189 8.617809 TCAAAATAAGTGTCTCAACTTTGTACC 58.382 33.333 0.00 0.00 40.77 3.34
3607 8190 8.402472 CAAAATAAGTGTCTCAACTTTGTACCA 58.598 33.333 0.00 0.00 40.77 3.25
3608 8191 8.514330 AAATAAGTGTCTCAACTTTGTACCAA 57.486 30.769 0.00 0.00 40.77 3.67
3609 8192 5.813080 AAGTGTCTCAACTTTGTACCAAC 57.187 39.130 0.00 0.00 37.05 3.77
3610 8193 5.099042 AGTGTCTCAACTTTGTACCAACT 57.901 39.130 0.00 0.00 0.00 3.16
3611 8194 5.497474 AGTGTCTCAACTTTGTACCAACTT 58.503 37.500 0.00 0.00 0.00 2.66
3612 8195 6.646267 AGTGTCTCAACTTTGTACCAACTTA 58.354 36.000 0.00 0.00 0.00 2.24
3613 8196 7.107542 AGTGTCTCAACTTTGTACCAACTTAA 58.892 34.615 0.00 0.00 0.00 1.85
3614 8197 7.280205 AGTGTCTCAACTTTGTACCAACTTAAG 59.720 37.037 0.00 0.00 0.00 1.85
3615 8198 7.065443 GTGTCTCAACTTTGTACCAACTTAAGT 59.935 37.037 1.12 1.12 34.67 2.24
3616 8199 7.065324 TGTCTCAACTTTGTACCAACTTAAGTG 59.935 37.037 9.34 0.00 33.99 3.16
3617 8200 6.037830 TCTCAACTTTGTACCAACTTAAGTGC 59.962 38.462 9.34 0.00 33.99 4.40
3618 8201 5.648526 TCAACTTTGTACCAACTTAAGTGCA 59.351 36.000 9.34 1.36 33.99 4.57
3619 8202 6.151312 TCAACTTTGTACCAACTTAAGTGCAA 59.849 34.615 9.34 7.20 36.91 4.08
3620 8203 6.518208 ACTTTGTACCAACTTAAGTGCAAA 57.482 33.333 9.34 13.40 43.33 3.68
3621 8204 6.926313 ACTTTGTACCAACTTAAGTGCAAAA 58.074 32.000 9.34 4.36 44.33 2.44
3622 8205 7.552459 ACTTTGTACCAACTTAAGTGCAAAAT 58.448 30.769 9.34 3.96 44.33 1.82
3623 8206 8.038351 ACTTTGTACCAACTTAAGTGCAAAATT 58.962 29.630 9.34 4.19 44.33 1.82
3624 8207 7.763172 TTGTACCAACTTAAGTGCAAAATTG 57.237 32.000 9.34 1.48 35.96 2.32
3625 8208 6.868622 TGTACCAACTTAAGTGCAAAATTGT 58.131 32.000 9.34 0.00 0.00 2.71
3626 8209 7.997482 TGTACCAACTTAAGTGCAAAATTGTA 58.003 30.769 9.34 0.00 0.00 2.41
3627 8210 7.916450 TGTACCAACTTAAGTGCAAAATTGTAC 59.084 33.333 9.34 9.04 42.99 2.90
3639 8222 8.270026 GTGCAAAATTGTACTAAGTTTGAGAC 57.730 34.615 22.93 17.18 40.10 3.36
3640 8223 7.913297 GTGCAAAATTGTACTAAGTTTGAGACA 59.087 33.333 22.93 14.33 40.10 3.41
3641 8224 7.913297 TGCAAAATTGTACTAAGTTTGAGACAC 59.087 33.333 22.93 12.37 37.38 3.67
3642 8225 8.129211 GCAAAATTGTACTAAGTTTGAGACACT 58.871 33.333 22.93 0.00 37.38 3.55
3651 8234 8.166422 ACTAAGTTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 36.39 4.12
3652 8235 7.996644 ACTAAGTTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 36.39 4.37
3653 8236 6.635030 AGTTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
3654 8237 5.238650 AGTTTGAGACACTTATTTTGGGACG 59.761 40.000 0.00 0.00 0.00 4.79
3655 8238 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3656 8239 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3657 8240 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3658 8241 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
3659 8242 4.041198 AGACACTTATTTTGGGACGGAGAA 59.959 41.667 0.00 0.00 0.00 2.87
3660 8243 4.721132 ACACTTATTTTGGGACGGAGAAA 58.279 39.130 0.00 0.00 0.00 2.52
3661 8244 4.760204 ACACTTATTTTGGGACGGAGAAAG 59.240 41.667 0.00 0.00 0.00 2.62
3662 8245 4.760204 CACTTATTTTGGGACGGAGAAAGT 59.240 41.667 0.00 0.00 0.00 2.66
3663 8246 5.935789 CACTTATTTTGGGACGGAGAAAGTA 59.064 40.000 0.00 0.00 0.00 2.24
3664 8247 6.092259 CACTTATTTTGGGACGGAGAAAGTAG 59.908 42.308 0.00 0.00 0.00 2.57
3665 8248 4.635699 ATTTTGGGACGGAGAAAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
3666 8249 5.750352 ATTTTGGGACGGAGAAAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
3667 8250 5.549742 TTTTGGGACGGAGAAAGTAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
3668 8251 5.750352 TTTGGGACGGAGAAAGTAGTAAT 57.250 39.130 0.00 0.00 0.00 1.89
3671 8254 4.081309 TGGGACGGAGAAAGTAGTAATTGG 60.081 45.833 0.00 0.00 0.00 3.16
3683 8266 9.994432 GAAAGTAGTAATTGGATGACTTTGATG 57.006 33.333 2.76 0.00 37.28 3.07
3688 8271 8.408043 AGTAATTGGATGACTTTGATGTTTCA 57.592 30.769 0.00 0.00 0.00 2.69
3747 8330 2.158593 AGCGCACTCCCTTATCTCTCTA 60.159 50.000 11.47 0.00 0.00 2.43
3761 8344 8.348507 CCTTATCTCTCTATTTTCAAACCATGC 58.651 37.037 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
749 5183 2.518933 CCCCCACTTTCAACCGGT 59.481 61.111 0.00 0.00 0.00 5.28
775 5223 8.070034 TCTACTCCTAATGAACGAATTGGTTA 57.930 34.615 5.77 0.00 0.00 2.85
811 5259 8.953665 ACCTCCTTTGATTTCCAATATATCTCT 58.046 33.333 0.00 0.00 34.23 3.10
812 5260 9.007901 CACCTCCTTTGATTTCCAATATATCTC 57.992 37.037 0.00 0.00 34.23 2.75
813 5261 7.449704 GCACCTCCTTTGATTTCCAATATATCT 59.550 37.037 0.00 0.00 34.23 1.98
814 5262 7.573843 CGCACCTCCTTTGATTTCCAATATATC 60.574 40.741 0.00 0.00 34.23 1.63
815 5263 6.207417 CGCACCTCCTTTGATTTCCAATATAT 59.793 38.462 0.00 0.00 34.23 0.86
816 5264 5.530915 CGCACCTCCTTTGATTTCCAATATA 59.469 40.000 0.00 0.00 34.23 0.86
817 5265 4.339247 CGCACCTCCTTTGATTTCCAATAT 59.661 41.667 0.00 0.00 34.23 1.28
818 5266 3.694072 CGCACCTCCTTTGATTTCCAATA 59.306 43.478 0.00 0.00 34.23 1.90
819 5267 2.493278 CGCACCTCCTTTGATTTCCAAT 59.507 45.455 0.00 0.00 34.23 3.16
820 5268 1.885887 CGCACCTCCTTTGATTTCCAA 59.114 47.619 0.00 0.00 0.00 3.53
821 5269 1.073125 TCGCACCTCCTTTGATTTCCA 59.927 47.619 0.00 0.00 0.00 3.53
822 5270 1.740025 CTCGCACCTCCTTTGATTTCC 59.260 52.381 0.00 0.00 0.00 3.13
823 5271 1.131315 GCTCGCACCTCCTTTGATTTC 59.869 52.381 0.00 0.00 0.00 2.17
824 5272 1.168714 GCTCGCACCTCCTTTGATTT 58.831 50.000 0.00 0.00 0.00 2.17
825 5273 0.678048 GGCTCGCACCTCCTTTGATT 60.678 55.000 0.00 0.00 0.00 2.57
826 5274 1.078143 GGCTCGCACCTCCTTTGAT 60.078 57.895 0.00 0.00 0.00 2.57
827 5275 2.347490 GGCTCGCACCTCCTTTGA 59.653 61.111 0.00 0.00 0.00 2.69
828 5276 2.747855 GGGCTCGCACCTCCTTTG 60.748 66.667 0.00 0.00 0.00 2.77
829 5277 3.249189 TGGGCTCGCACCTCCTTT 61.249 61.111 0.00 0.00 0.00 3.11
830 5278 3.710722 CTGGGCTCGCACCTCCTT 61.711 66.667 0.00 0.00 0.00 3.36
838 5286 3.622060 TTAACTGGGCTGGGCTCGC 62.622 63.158 0.00 0.00 0.00 5.03
839 5287 1.450312 CTTAACTGGGCTGGGCTCG 60.450 63.158 0.00 0.00 0.00 5.03
840 5288 1.077429 CCTTAACTGGGCTGGGCTC 60.077 63.158 0.00 0.00 0.00 4.70
1153 5603 1.183030 TGGAAGAAGCCGACGAAGGA 61.183 55.000 0.00 0.00 0.00 3.36
1155 5605 1.344942 CGTGGAAGAAGCCGACGAAG 61.345 60.000 0.00 0.00 35.75 3.79
1289 5752 1.154225 CAGCGTCCGTTGGATTTGC 60.154 57.895 0.00 0.00 32.73 3.68
1290 5753 0.110238 CACAGCGTCCGTTGGATTTG 60.110 55.000 8.36 0.00 32.73 2.32
1376 5840 4.435518 CCACATGAAATTGTTCGTCCTACG 60.436 45.833 0.00 0.00 44.19 3.51
1435 5899 4.322804 GTGTTCGATTGTTACTAGTCCACG 59.677 45.833 0.00 0.00 0.00 4.94
1439 5903 5.118203 GTGTGGTGTTCGATTGTTACTAGTC 59.882 44.000 0.00 0.00 0.00 2.59
1448 5912 1.206578 GCGGTGTGGTGTTCGATTG 59.793 57.895 0.00 0.00 0.00 2.67
1449 5913 1.070786 AGCGGTGTGGTGTTCGATT 59.929 52.632 0.00 0.00 0.00 3.34
1450 5914 1.667830 CAGCGGTGTGGTGTTCGAT 60.668 57.895 6.41 0.00 41.21 3.59
1451 5915 2.279851 CAGCGGTGTGGTGTTCGA 60.280 61.111 6.41 0.00 41.21 3.71
1462 5929 2.621055 CTCTACTCTTAGATGCAGCGGT 59.379 50.000 0.00 0.00 33.66 5.68
1463 5930 2.621055 ACTCTACTCTTAGATGCAGCGG 59.379 50.000 0.00 0.00 33.66 5.52
1600 6075 3.563808 CGGTTGATTCAGGAAAACAGTGA 59.436 43.478 0.00 0.00 0.00 3.41
1603 6078 2.554032 AGCGGTTGATTCAGGAAAACAG 59.446 45.455 0.00 0.00 0.00 3.16
1697 6175 4.810191 AGGAACAGATCAGTCAAGGTAC 57.190 45.455 0.00 0.00 0.00 3.34
1857 6335 4.262249 CCGAAGGCCAAATAAAAAGGAACA 60.262 41.667 5.01 0.00 46.14 3.18
1947 6429 7.012989 TCGATACTAATGGTCGGTATATCATGG 59.987 40.741 0.00 0.00 36.14 3.66
1988 6472 6.813649 CAGTACATAAAACTGCTAAGCTCAGA 59.186 38.462 7.84 0.00 38.08 3.27
2011 6495 2.135933 GACGGTTTCAAGGAGACACAG 58.864 52.381 0.00 0.00 0.00 3.66
2124 6608 2.560542 ACACTGAGACCTCTGACATGAC 59.439 50.000 0.00 0.00 33.48 3.06
2178 6664 3.262660 AGGTCTTCTCATCTCACATGCAA 59.737 43.478 0.00 0.00 0.00 4.08
2305 6791 7.334090 TGGAAAGAGGAAACATTATCTCTCAG 58.666 38.462 0.00 0.00 35.76 3.35
2345 6831 2.654749 GCGCTTTGCCTTTAAATCCT 57.345 45.000 0.00 0.00 37.76 3.24
2429 6916 3.821033 AGGAATACACCAGAAACTGCAAC 59.179 43.478 0.00 0.00 0.00 4.17
2609 7099 2.103042 GGATGCAGACTGACACGGC 61.103 63.158 6.65 0.00 0.00 5.68
2633 7124 1.123928 AGCTACGCATAAGGAAGGCT 58.876 50.000 0.00 0.00 0.00 4.58
2650 7141 4.774503 AAGCGCAGAGGAGGCAGC 62.775 66.667 11.47 0.00 0.00 5.25
2817 7319 4.342378 TCCGTTAGATCAGCAGCTTAATCT 59.658 41.667 17.43 17.43 33.27 2.40
2893 7396 0.669318 GACCAAACGCGAGACCATCA 60.669 55.000 15.93 0.00 0.00 3.07
2905 7408 4.390297 GTGCTTCAGTATCAGAGACCAAAC 59.610 45.833 0.00 0.00 0.00 2.93
2917 7420 4.212636 GTGTAAAACCGTGTGCTTCAGTAT 59.787 41.667 0.00 0.00 0.00 2.12
2967 7470 6.590656 TCCCTTCACAAACATATATCCCTT 57.409 37.500 0.00 0.00 0.00 3.95
2969 7472 4.762251 GCTCCCTTCACAAACATATATCCC 59.238 45.833 0.00 0.00 0.00 3.85
2972 7475 6.100279 TCAGAGCTCCCTTCACAAACATATAT 59.900 38.462 10.93 0.00 0.00 0.86
2973 7476 5.425217 TCAGAGCTCCCTTCACAAACATATA 59.575 40.000 10.93 0.00 0.00 0.86
2985 7488 4.952335 CCAAATAACATTCAGAGCTCCCTT 59.048 41.667 10.93 0.00 0.00 3.95
3058 7568 3.829026 GAGGTTTTGGAGAGGCAATTCTT 59.171 43.478 0.00 0.00 0.00 2.52
3062 7572 1.614317 CCGAGGTTTTGGAGAGGCAAT 60.614 52.381 0.00 0.00 0.00 3.56
3152 7700 8.428063 TCAAACCAAATCACTTTATGTTCCAAT 58.572 29.630 0.00 0.00 0.00 3.16
3158 7706 8.006298 TCAACTCAAACCAAATCACTTTATGT 57.994 30.769 0.00 0.00 0.00 2.29
3191 7740 0.905357 AGGTTCAGGAATGGACTCCG 59.095 55.000 0.00 0.00 40.75 4.63
3234 7783 5.044846 AGAGGTAGGGAGTGCATAAACAAAT 60.045 40.000 0.00 0.00 0.00 2.32
3238 7787 3.451178 TGAGAGGTAGGGAGTGCATAAAC 59.549 47.826 0.00 0.00 0.00 2.01
3246 7795 1.704704 GGGGTGAGAGGTAGGGAGT 59.295 63.158 0.00 0.00 0.00 3.85
3270 7819 0.839277 TCCATGCATCACGAGGGATT 59.161 50.000 0.00 0.00 0.00 3.01
3271 7820 0.107456 GTCCATGCATCACGAGGGAT 59.893 55.000 0.00 0.00 0.00 3.85
3272 7821 1.522092 GTCCATGCATCACGAGGGA 59.478 57.895 0.00 0.00 0.00 4.20
3307 7856 1.146485 CTACTCGAGCGAGGGAGGA 59.854 63.158 22.11 3.43 45.88 3.71
3309 7858 3.027292 GCTACTCGAGCGAGGGAG 58.973 66.667 22.11 18.42 45.88 4.30
3318 7867 2.107378 AGAGATCAGGATGGCTACTCGA 59.893 50.000 0.00 0.00 36.16 4.04
3353 7902 3.922364 GGGGGAAGGGGGCACAAA 61.922 66.667 0.00 0.00 0.00 2.83
3385 7936 2.099921 CAGGGACAGAACGGTAGATCAG 59.900 54.545 0.00 0.00 0.00 2.90
3398 7949 3.030291 AGTAGAGCTTGATCAGGGACAG 58.970 50.000 6.99 0.00 0.00 3.51
3417 7968 3.814316 GCAAATAAGGTGGAGGGTCAAGT 60.814 47.826 0.00 0.00 0.00 3.16
3439 8006 2.679716 CAAGGAGGAAGGGGCTGG 59.320 66.667 0.00 0.00 0.00 4.85
3443 8010 0.621862 AGTAGGCAAGGAGGAAGGGG 60.622 60.000 0.00 0.00 0.00 4.79
3464 8034 2.238521 GGGAGGAGATGAGCAGTAGAG 58.761 57.143 0.00 0.00 0.00 2.43
3467 8037 0.636647 TGGGGAGGAGATGAGCAGTA 59.363 55.000 0.00 0.00 0.00 2.74
3487 8057 1.011574 GACACGCTGCGACGTTTTT 60.012 52.632 30.47 0.16 45.75 1.94
3525 8095 4.516321 GGAAAAGTAGGGAGCAAACGTTTA 59.484 41.667 14.20 0.00 0.00 2.01
3533 8103 2.344592 TCCTTGGAAAAGTAGGGAGCA 58.655 47.619 0.00 0.00 0.00 4.26
3556 8139 5.750352 ACGGAGGGAGTATTTGTTTTCTA 57.250 39.130 0.00 0.00 0.00 2.10
3569 8152 4.760204 ACACTTATTTTGAAACGGAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
3571 8154 4.760204 AGACACTTATTTTGAAACGGAGGG 59.240 41.667 0.00 0.00 0.00 4.30
3572 8155 5.468746 TGAGACACTTATTTTGAAACGGAGG 59.531 40.000 0.00 0.00 0.00 4.30
3574 8157 6.540914 AGTTGAGACACTTATTTTGAAACGGA 59.459 34.615 0.00 0.00 0.00 4.69
3575 8158 6.725246 AGTTGAGACACTTATTTTGAAACGG 58.275 36.000 0.00 0.00 0.00 4.44
3576 8159 8.523464 CAAAGTTGAGACACTTATTTTGAAACG 58.477 33.333 0.00 0.00 35.87 3.60
3577 8160 9.353999 ACAAAGTTGAGACACTTATTTTGAAAC 57.646 29.630 0.00 0.00 35.87 2.78
3579 8162 9.997482 GTACAAAGTTGAGACACTTATTTTGAA 57.003 29.630 0.00 0.00 35.87 2.69
3580 8163 8.617809 GGTACAAAGTTGAGACACTTATTTTGA 58.382 33.333 0.00 0.00 35.87 2.69
3581 8164 8.402472 TGGTACAAAGTTGAGACACTTATTTTG 58.598 33.333 0.00 0.00 35.87 2.44
3582 8165 8.514330 TGGTACAAAGTTGAGACACTTATTTT 57.486 30.769 0.00 0.00 35.87 1.82
3601 8184 6.868622 ACAATTTTGCACTTAAGTTGGTACA 58.131 32.000 5.07 0.00 0.00 2.90
3602 8185 8.132995 AGTACAATTTTGCACTTAAGTTGGTAC 58.867 33.333 5.07 8.60 30.84 3.34
3603 8186 8.228035 AGTACAATTTTGCACTTAAGTTGGTA 57.772 30.769 5.07 0.00 30.84 3.25
3604 8187 7.107639 AGTACAATTTTGCACTTAAGTTGGT 57.892 32.000 5.07 0.00 30.84 3.67
3605 8188 9.180678 CTTAGTACAATTTTGCACTTAAGTTGG 57.819 33.333 5.07 0.00 36.29 3.77
3606 8189 9.730420 ACTTAGTACAATTTTGCACTTAAGTTG 57.270 29.630 5.07 2.46 36.29 3.16
3611 8194 9.944663 CTCAAACTTAGTACAATTTTGCACTTA 57.055 29.630 1.73 0.00 36.29 2.24
3612 8195 8.682710 TCTCAAACTTAGTACAATTTTGCACTT 58.317 29.630 1.73 0.00 36.29 3.16
3613 8196 8.129211 GTCTCAAACTTAGTACAATTTTGCACT 58.871 33.333 0.00 2.03 38.32 4.40
3614 8197 7.913297 TGTCTCAAACTTAGTACAATTTTGCAC 59.087 33.333 0.00 5.99 0.00 4.57
3615 8198 7.913297 GTGTCTCAAACTTAGTACAATTTTGCA 59.087 33.333 0.00 0.00 0.00 4.08
3616 8199 8.129211 AGTGTCTCAAACTTAGTACAATTTTGC 58.871 33.333 0.00 0.00 0.00 3.68
3625 8208 9.280174 CCCAAAATAAGTGTCTCAAACTTAGTA 57.720 33.333 2.85 0.00 41.95 1.82
3626 8209 7.996644 TCCCAAAATAAGTGTCTCAAACTTAGT 59.003 33.333 2.85 0.00 41.95 2.24
3627 8210 8.290325 GTCCCAAAATAAGTGTCTCAAACTTAG 58.710 37.037 2.85 0.00 41.95 2.18
3628 8211 7.041644 CGTCCCAAAATAAGTGTCTCAAACTTA 60.042 37.037 0.00 0.00 42.63 2.24
3629 8212 6.238648 CGTCCCAAAATAAGTGTCTCAAACTT 60.239 38.462 0.00 0.00 40.82 2.66
3630 8213 5.238650 CGTCCCAAAATAAGTGTCTCAAACT 59.761 40.000 0.00 0.00 0.00 2.66
3631 8214 5.449304 CGTCCCAAAATAAGTGTCTCAAAC 58.551 41.667 0.00 0.00 0.00 2.93
3632 8215 4.517453 CCGTCCCAAAATAAGTGTCTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
3633 8216 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3634 8217 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3635 8218 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3636 8219 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
3637 8220 3.934068 TCTCCGTCCCAAAATAAGTGTC 58.066 45.455 0.00 0.00 0.00 3.67
3638 8221 4.360951 TTCTCCGTCCCAAAATAAGTGT 57.639 40.909 0.00 0.00 0.00 3.55
3639 8222 4.760204 ACTTTCTCCGTCCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
3640 8223 4.981812 ACTTTCTCCGTCCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
3641 8224 6.171213 ACTACTTTCTCCGTCCCAAAATAAG 58.829 40.000 0.00 0.00 0.00 1.73
3642 8225 6.117975 ACTACTTTCTCCGTCCCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
3643 8226 5.750352 ACTACTTTCTCCGTCCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
3644 8227 4.635699 ACTACTTTCTCCGTCCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
3645 8228 5.549742 TTACTACTTTCTCCGTCCCAAAA 57.450 39.130 0.00 0.00 0.00 2.44
3646 8229 5.750352 ATTACTACTTTCTCCGTCCCAAA 57.250 39.130 0.00 0.00 0.00 3.28
3647 8230 5.484715 CAATTACTACTTTCTCCGTCCCAA 58.515 41.667 0.00 0.00 0.00 4.12
3648 8231 4.081309 CCAATTACTACTTTCTCCGTCCCA 60.081 45.833 0.00 0.00 0.00 4.37
3649 8232 4.161001 TCCAATTACTACTTTCTCCGTCCC 59.839 45.833 0.00 0.00 0.00 4.46
3650 8233 5.334724 TCCAATTACTACTTTCTCCGTCC 57.665 43.478 0.00 0.00 0.00 4.79
3651 8234 6.476053 GTCATCCAATTACTACTTTCTCCGTC 59.524 42.308 0.00 0.00 0.00 4.79
3652 8235 6.154706 AGTCATCCAATTACTACTTTCTCCGT 59.845 38.462 0.00 0.00 0.00 4.69
3653 8236 6.574350 AGTCATCCAATTACTACTTTCTCCG 58.426 40.000 0.00 0.00 0.00 4.63
3654 8237 8.669243 CAAAGTCATCCAATTACTACTTTCTCC 58.331 37.037 0.00 0.00 35.57 3.71
3655 8238 9.436957 TCAAAGTCATCCAATTACTACTTTCTC 57.563 33.333 0.00 0.00 35.57 2.87
3656 8239 9.965902 ATCAAAGTCATCCAATTACTACTTTCT 57.034 29.630 0.00 0.00 35.57 2.52
3657 8240 9.994432 CATCAAAGTCATCCAATTACTACTTTC 57.006 33.333 0.00 0.00 35.57 2.62
3658 8241 9.520515 ACATCAAAGTCATCCAATTACTACTTT 57.479 29.630 0.00 0.00 37.58 2.66
3659 8242 9.520515 AACATCAAAGTCATCCAATTACTACTT 57.479 29.630 0.00 0.00 0.00 2.24
3660 8243 9.520515 AAACATCAAAGTCATCCAATTACTACT 57.479 29.630 0.00 0.00 0.00 2.57
3661 8244 9.774742 GAAACATCAAAGTCATCCAATTACTAC 57.225 33.333 0.00 0.00 0.00 2.73
3662 8245 9.513906 TGAAACATCAAAGTCATCCAATTACTA 57.486 29.630 0.00 0.00 0.00 1.82
3663 8246 8.408043 TGAAACATCAAAGTCATCCAATTACT 57.592 30.769 0.00 0.00 0.00 2.24
3697 8280 7.241376 CCTCTACAACCGTTTGTATTGAAATC 58.759 38.462 5.98 0.00 45.25 2.17
3707 8290 1.535462 CTTGGCCTCTACAACCGTTTG 59.465 52.381 3.32 0.00 38.83 2.93
3747 8330 3.612479 GCTCTCGTGCATGGTTTGAAAAT 60.612 43.478 5.98 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.