Multiple sequence alignment - TraesCS7B01G226400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G226400 chr7B 100.000 5036 0 0 1 5036 426885383 426880348 0.000000e+00 9300.0
1 TraesCS7B01G226400 chr7B 97.531 81 2 0 1344 1424 426883751 426883671 6.800000e-29 139.0
2 TraesCS7B01G226400 chr7B 97.531 81 2 0 1633 1713 426884040 426883960 6.800000e-29 139.0
3 TraesCS7B01G226400 chr7D 94.735 3381 122 21 1633 4973 412675230 412671866 0.000000e+00 5206.0
4 TraesCS7B01G226400 chr7D 89.244 1441 91 27 10 1424 412676552 412675150 0.000000e+00 1744.0
5 TraesCS7B01G226400 chr7D 97.619 42 1 0 1672 1713 412675232 412675191 6.990000e-09 73.1
6 TraesCS7B01G226400 chr7A 95.285 2460 82 16 1753 4192 473912533 473910088 0.000000e+00 3869.0
7 TraesCS7B01G226400 chr7A 86.477 1442 81 52 1 1424 473913889 473912544 0.000000e+00 1478.0
8 TraesCS7B01G226400 chr7A 90.566 424 32 5 4619 5036 473909783 473909362 5.700000e-154 555.0
9 TraesCS7B01G226400 chr7A 95.793 309 8 2 4241 4546 473910089 473909783 1.260000e-135 494.0
10 TraesCS7B01G226400 chr7A 97.872 94 2 0 1633 1726 473912624 473912531 4.030000e-36 163.0
11 TraesCS7B01G226400 chr4A 96.364 220 6 2 1415 1633 177219965 177219747 1.330000e-95 361.0
12 TraesCS7B01G226400 chr6D 97.170 212 6 0 1423 1634 238848481 238848692 4.790000e-95 359.0
13 TraesCS7B01G226400 chr6D 95.455 220 10 0 1414 1633 255814885 255814666 8.020000e-93 351.0
14 TraesCS7B01G226400 chr1D 97.619 210 4 1 1425 1634 115744397 115744189 4.790000e-95 359.0
15 TraesCS7B01G226400 chr1D 96.364 220 5 3 1415 1634 419639847 419639631 4.790000e-95 359.0
16 TraesCS7B01G226400 chr3D 97.170 212 5 1 1423 1634 257339540 257339750 1.720000e-94 357.0
17 TraesCS7B01G226400 chr2D 95.890 219 9 0 1415 1633 375699400 375699618 6.200000e-94 355.0
18 TraesCS7B01G226400 chr2D 96.296 216 8 0 1415 1630 421923571 421923786 6.200000e-94 355.0
19 TraesCS7B01G226400 chr2D 93.750 48 2 1 4795 4841 525905010 525904963 2.520000e-08 71.3
20 TraesCS7B01G226400 chr2D 100.000 35 0 0 4795 4829 134452786 134452752 1.170000e-06 65.8
21 TraesCS7B01G226400 chr4D 96.667 210 7 0 1424 1633 67998644 67998435 2.890000e-92 350.0
22 TraesCS7B01G226400 chr3B 78.102 137 18 8 4795 4925 598123863 598123733 5.410000e-10 76.8
23 TraesCS7B01G226400 chr3A 97.619 42 1 0 4795 4836 597325118 597325077 6.990000e-09 73.1
24 TraesCS7B01G226400 chr3A 88.136 59 6 1 4795 4852 508380791 508380733 9.050000e-08 69.4
25 TraesCS7B01G226400 chr2A 88.889 45 4 1 4801 4844 651094127 651094083 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G226400 chr7B 426880348 426885383 5035 True 3192.666667 9300 98.3540 1 5036 3 chr7B.!!$R1 5035
1 TraesCS7B01G226400 chr7D 412671866 412676552 4686 True 2341.033333 5206 93.8660 10 4973 3 chr7D.!!$R1 4963
2 TraesCS7B01G226400 chr7A 473909362 473913889 4527 True 1311.800000 3869 93.1986 1 5036 5 chr7A.!!$R1 5035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 661 0.538516 TTTCACCACCCACGGATTGG 60.539 55.0 2.9 2.9 46.47 3.16 F
1524 1567 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.0 0.0 0.0 0.00 5.69 F
1597 1640 0.038599 ATTGCAGGATGGCAGTCACA 59.961 50.0 0.0 0.0 45.88 3.58 F
1865 1908 0.465824 GATGCTTGCAGCCCTCTGAT 60.466 55.0 0.0 0.0 42.95 2.90 F
3644 3699 0.036010 ACTCTGAACCTTGCATCCGG 60.036 55.0 0.0 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1625 0.034767 ATGGTGTGACTGCCATCCTG 60.035 55.000 6.46 0.0 41.24 3.86 R
3355 3410 2.359355 GGGTAGACTCTGATGGAGGGAA 60.359 54.545 0.00 0.0 45.83 3.97 R
3530 3585 0.908910 ACATCTGCATGGGTTACGGA 59.091 50.000 0.00 0.0 33.82 4.69 R
3694 3749 0.984230 GGGGAGACTTGTGGTGATGA 59.016 55.000 0.00 0.0 0.00 2.92 R
4973 5113 0.667487 CATTGTGCAGACCGTCGAGT 60.667 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.812922 CTGGAGCGGCACACAGATC 60.813 63.158 11.53 0.00 32.86 2.75
53 66 4.680237 CACCGCCGCTGGTTCTGA 62.680 66.667 4.42 0.00 41.38 3.27
54 67 3.706373 ACCGCCGCTGGTTCTGAT 61.706 61.111 1.62 0.00 39.99 2.90
55 68 2.892425 CCGCCGCTGGTTCTGATC 60.892 66.667 0.00 0.00 0.00 2.92
56 69 2.892425 CGCCGCTGGTTCTGATCC 60.892 66.667 0.00 0.00 0.00 3.36
57 70 2.268920 GCCGCTGGTTCTGATCCA 59.731 61.111 7.22 7.22 0.00 3.41
101 114 0.958382 TGCCGACAGCCATGGTAAAC 60.958 55.000 14.67 2.49 42.71 2.01
103 116 1.529226 CCGACAGCCATGGTAAACAA 58.471 50.000 14.67 0.00 0.00 2.83
104 117 1.199097 CCGACAGCCATGGTAAACAAC 59.801 52.381 14.67 0.00 0.00 3.32
105 118 2.151202 CGACAGCCATGGTAAACAACT 58.849 47.619 14.67 0.00 0.00 3.16
106 119 2.095768 CGACAGCCATGGTAAACAACTG 60.096 50.000 14.67 12.27 35.74 3.16
107 120 1.613437 ACAGCCATGGTAAACAACTGC 59.387 47.619 14.67 0.00 34.03 4.40
108 121 1.612950 CAGCCATGGTAAACAACTGCA 59.387 47.619 14.67 0.00 0.00 4.41
109 122 1.888512 AGCCATGGTAAACAACTGCAG 59.111 47.619 13.48 13.48 0.00 4.41
110 123 1.067635 GCCATGGTAAACAACTGCAGG 60.068 52.381 19.93 3.21 0.00 4.85
111 124 1.545582 CCATGGTAAACAACTGCAGGG 59.454 52.381 19.93 12.40 0.00 4.45
112 125 1.067635 CATGGTAAACAACTGCAGGGC 60.068 52.381 19.93 0.00 0.00 5.19
113 126 0.825840 TGGTAAACAACTGCAGGGCC 60.826 55.000 19.93 9.21 0.00 5.80
146 159 2.251818 CCCACGGATAGAGATGGATGT 58.748 52.381 0.00 0.00 33.80 3.06
163 176 4.034626 TGGATGTGCGGAAAACATTATACG 59.965 41.667 0.00 0.00 38.37 3.06
272 285 1.484240 CTGTCTCCTCCCCACTGAATC 59.516 57.143 0.00 0.00 0.00 2.52
282 295 1.635663 CCACTGAATCCGCCGTCAAC 61.636 60.000 0.00 0.00 0.00 3.18
358 371 3.458163 GCCGACGTCTCCATCCCA 61.458 66.667 14.70 0.00 0.00 4.37
364 377 3.785859 GTCTCCATCCCAGCGCCA 61.786 66.667 2.29 0.00 0.00 5.69
380 393 2.583520 CACCTCTCTGCCCTCTGC 59.416 66.667 0.00 0.00 41.77 4.26
419 432 4.747529 AGTAACGCCGCCGGTTCC 62.748 66.667 4.45 0.00 39.22 3.62
452 467 5.532779 GTCTTCTCTGTTTCCAGGTGAAAAT 59.467 40.000 0.00 0.00 44.30 1.82
492 515 2.911484 AGATTCGAAAGCCAGGCTAAG 58.089 47.619 16.56 9.43 38.25 2.18
559 582 9.483062 CTATTAGTTTCTTTTCAGCTGAATTCG 57.517 33.333 28.89 19.03 33.54 3.34
568 592 2.932614 TCAGCTGAATTCGAGCTAAAGC 59.067 45.455 23.23 14.87 45.24 3.51
586 610 1.809207 CGCAATCCTTTGGCCGAAT 59.191 52.632 5.69 0.00 33.22 3.34
612 636 5.648092 TGCTTTTCTCTCTAAGTTATTGGGC 59.352 40.000 0.00 0.00 0.00 5.36
637 661 0.538516 TTTCACCACCCACGGATTGG 60.539 55.000 2.90 2.90 46.47 3.16
649 673 3.877508 CCACGGATTGGTAGGATTCTTTC 59.122 47.826 0.00 0.00 41.10 2.62
650 674 3.555956 CACGGATTGGTAGGATTCTTTCG 59.444 47.826 0.00 0.00 0.00 3.46
675 700 4.950050 CTCCGCATATTTTGGAGTCTACT 58.050 43.478 6.52 0.00 43.48 2.57
680 705 4.513318 GCATATTTTGGAGTCTACTGAGGC 59.487 45.833 0.00 0.00 0.00 4.70
686 711 1.406205 GGAGTCTACTGAGGCTTTGGC 60.406 57.143 0.00 0.00 37.93 4.52
722 747 1.133025 GCGTCCTCCCATGAAAACATG 59.867 52.381 0.00 0.00 0.00 3.21
734 759 6.421801 CCCATGAAAACATGTTCTTTTGTCTC 59.578 38.462 12.39 0.23 0.00 3.36
748 780 9.803315 GTTCTTTTGTCTCAATTTTAGAGGTTT 57.197 29.630 0.00 0.00 33.92 3.27
766 798 3.748568 GGTTTCTCTCCTTTGTGTGCTAG 59.251 47.826 0.00 0.00 0.00 3.42
767 799 4.381411 GTTTCTCTCCTTTGTGTGCTAGT 58.619 43.478 0.00 0.00 0.00 2.57
768 800 5.510861 GGTTTCTCTCCTTTGTGTGCTAGTA 60.511 44.000 0.00 0.00 0.00 1.82
779 811 5.295431 TGTGTGCTAGTACATTTGAATGC 57.705 39.130 17.01 2.26 40.04 3.56
780 812 5.003160 TGTGTGCTAGTACATTTGAATGCT 58.997 37.500 17.01 0.00 40.04 3.79
781 813 6.169800 TGTGTGCTAGTACATTTGAATGCTA 58.830 36.000 17.01 0.00 40.04 3.49
782 814 6.823182 TGTGTGCTAGTACATTTGAATGCTAT 59.177 34.615 17.01 0.00 40.04 2.97
783 815 7.984617 TGTGTGCTAGTACATTTGAATGCTATA 59.015 33.333 17.01 0.00 40.04 1.31
814 853 7.715265 AAATACGTAGATATTGTTCCTGCTG 57.285 36.000 0.08 0.00 0.00 4.41
843 882 5.339990 CAGTTACACTGTTCCTGGTTTTTG 58.660 41.667 0.00 0.00 41.19 2.44
857 896 3.198635 TGGTTTTTGGTTTGATGGCTCAA 59.801 39.130 0.00 0.00 39.62 3.02
860 899 5.049474 GGTTTTTGGTTTGATGGCTCAATTC 60.049 40.000 1.23 0.00 40.95 2.17
862 901 4.524316 TTGGTTTGATGGCTCAATTCTG 57.476 40.909 1.23 0.00 40.95 3.02
892 931 2.478872 TGCAGGGCTAGTAGAGGATT 57.521 50.000 0.00 0.00 0.00 3.01
930 969 1.541670 GGGTGTTGTCTCGCAGGTTTA 60.542 52.381 0.00 0.00 0.00 2.01
931 970 1.529865 GGTGTTGTCTCGCAGGTTTAC 59.470 52.381 0.00 0.00 0.00 2.01
946 985 3.826729 AGGTTTACAGTTCTCATTTGGCC 59.173 43.478 0.00 0.00 0.00 5.36
947 986 3.056821 GGTTTACAGTTCTCATTTGGCCC 60.057 47.826 0.00 0.00 0.00 5.80
969 1008 3.650139 GTCGGTGTTTGCTCTTCTCTTA 58.350 45.455 0.00 0.00 0.00 2.10
999 1039 4.644685 CCAAAGGAAAGGAAGTCTGACAAA 59.355 41.667 10.88 0.00 0.00 2.83
1034 1074 6.409120 GCAAGAAGAGGAGGGAGATTATTTCT 60.409 42.308 0.00 0.00 37.41 2.52
1110 1150 1.006086 TGCTGATGGCGAATAACACG 58.994 50.000 0.00 0.00 45.43 4.49
1226 1269 8.922676 CAACTCACTACTATGTTTCGTTGTTAT 58.077 33.333 0.00 0.00 0.00 1.89
1277 1320 6.356556 TCCATAATTTGAGTCATCACCGATT 58.643 36.000 0.00 0.00 34.35 3.34
1284 1327 5.551305 TGAGTCATCACCGATTAATGGAT 57.449 39.130 9.93 0.00 0.00 3.41
1297 1340 5.622448 CGATTAATGGATTGATTGCTTGTCG 59.378 40.000 0.00 0.00 0.00 4.35
1298 1341 5.895636 TTAATGGATTGATTGCTTGTCGT 57.104 34.783 0.00 0.00 0.00 4.34
1316 1359 2.563620 TCGTGTGCATCCTGGTAGTTAA 59.436 45.455 0.00 0.00 0.00 2.01
1326 1369 7.230913 TGCATCCTGGTAGTTAAGACTAGTATC 59.769 40.741 0.00 0.00 38.98 2.24
1330 1373 7.128418 TCCTGGTAGTTAAGACTAGTATCTGGA 59.872 40.741 0.00 0.00 38.98 3.86
1402 1445 9.860650 ATAATGTTATTACCTCTTGTATGGCAA 57.139 29.630 0.00 0.00 35.50 4.52
1403 1446 8.766994 AATGTTATTACCTCTTGTATGGCAAT 57.233 30.769 0.00 0.00 36.36 3.56
1404 1447 8.766994 ATGTTATTACCTCTTGTATGGCAATT 57.233 30.769 0.00 0.00 36.36 2.32
1405 1448 8.588290 TGTTATTACCTCTTGTATGGCAATTT 57.412 30.769 0.00 0.00 36.36 1.82
1406 1449 8.465999 TGTTATTACCTCTTGTATGGCAATTTG 58.534 33.333 0.00 0.00 36.36 2.32
1407 1450 8.466798 GTTATTACCTCTTGTATGGCAATTTGT 58.533 33.333 0.00 0.00 36.36 2.83
1408 1451 9.688091 TTATTACCTCTTGTATGGCAATTTGTA 57.312 29.630 0.00 0.00 36.36 2.41
1409 1452 5.897377 ACCTCTTGTATGGCAATTTGTAC 57.103 39.130 0.00 0.00 36.36 2.90
1410 1453 5.321102 ACCTCTTGTATGGCAATTTGTACA 58.679 37.500 0.00 0.00 36.36 2.90
1411 1454 5.951747 ACCTCTTGTATGGCAATTTGTACAT 59.048 36.000 0.00 11.55 36.36 2.29
1412 1455 6.127647 ACCTCTTGTATGGCAATTTGTACATG 60.128 38.462 14.77 10.13 36.36 3.21
1413 1456 5.649557 TCTTGTATGGCAATTTGTACATGC 58.350 37.500 10.80 10.80 36.36 4.06
1414 1457 5.418524 TCTTGTATGGCAATTTGTACATGCT 59.581 36.000 17.09 3.99 39.94 3.79
1415 1458 5.657826 TGTATGGCAATTTGTACATGCTT 57.342 34.783 17.09 9.47 39.94 3.91
1416 1459 6.035368 TGTATGGCAATTTGTACATGCTTT 57.965 33.333 17.09 9.18 39.94 3.51
1417 1460 7.163001 TGTATGGCAATTTGTACATGCTTTA 57.837 32.000 17.09 8.40 39.94 1.85
1418 1461 7.780064 TGTATGGCAATTTGTACATGCTTTAT 58.220 30.769 17.09 12.25 39.94 1.40
1419 1462 8.907885 TGTATGGCAATTTGTACATGCTTTATA 58.092 29.630 17.09 11.51 39.94 0.98
1420 1463 9.743057 GTATGGCAATTTGTACATGCTTTATAA 57.257 29.630 17.09 0.00 39.94 0.98
1422 1465 8.645730 TGGCAATTTGTACATGCTTTATAATG 57.354 30.769 17.09 0.00 39.94 1.90
1423 1466 8.256605 TGGCAATTTGTACATGCTTTATAATGT 58.743 29.630 17.09 0.00 39.94 2.71
1424 1467 9.097257 GGCAATTTGTACATGCTTTATAATGTT 57.903 29.630 17.09 0.00 39.94 2.71
1431 1474 9.825109 TGTACATGCTTTATAATGTTACTAGCA 57.175 29.630 7.91 7.91 40.88 3.49
1434 1477 9.613428 ACATGCTTTATAATGTTACTAGCAAGA 57.387 29.630 12.66 0.00 40.14 3.02
1437 1480 8.559536 TGCTTTATAATGTTACTAGCAAGATGC 58.440 33.333 3.80 0.00 45.46 3.91
1438 1481 8.017946 GCTTTATAATGTTACTAGCAAGATGCC 58.982 37.037 0.00 0.00 46.52 4.40
1439 1482 7.979444 TTATAATGTTACTAGCAAGATGCCC 57.021 36.000 0.00 0.00 46.52 5.36
1440 1483 2.309528 TGTTACTAGCAAGATGCCCG 57.690 50.000 0.00 0.00 46.52 6.13
1441 1484 1.553248 TGTTACTAGCAAGATGCCCGT 59.447 47.619 0.00 0.00 46.52 5.28
1442 1485 1.933853 GTTACTAGCAAGATGCCCGTG 59.066 52.381 0.00 0.00 46.52 4.94
1443 1486 0.179084 TACTAGCAAGATGCCCGTGC 60.179 55.000 6.11 6.11 46.52 5.34
1446 1489 3.737172 GCAAGATGCCCGTGCGTT 61.737 61.111 0.00 0.00 40.20 4.84
1447 1490 2.176546 CAAGATGCCCGTGCGTTG 59.823 61.111 0.00 0.00 41.78 4.10
1448 1491 3.737172 AAGATGCCCGTGCGTTGC 61.737 61.111 0.00 0.00 41.78 4.17
1451 1494 4.118995 ATGCCCGTGCGTTGCATG 62.119 61.111 14.78 4.04 43.66 4.06
1471 1514 3.689347 TGGAACATCAAGATCTTGTGGG 58.311 45.455 29.80 22.43 41.16 4.61
1472 1515 3.330405 TGGAACATCAAGATCTTGTGGGA 59.670 43.478 29.80 14.89 41.16 4.37
1473 1516 3.944015 GGAACATCAAGATCTTGTGGGAG 59.056 47.826 29.80 19.24 41.16 4.30
1474 1517 4.323792 GGAACATCAAGATCTTGTGGGAGA 60.324 45.833 29.80 13.87 41.16 3.71
1475 1518 4.916041 ACATCAAGATCTTGTGGGAGAA 57.084 40.909 29.80 13.20 41.16 2.87
1476 1519 5.246981 ACATCAAGATCTTGTGGGAGAAA 57.753 39.130 29.80 12.52 41.16 2.52
1477 1520 5.634118 ACATCAAGATCTTGTGGGAGAAAA 58.366 37.500 29.80 11.86 41.16 2.29
1478 1521 5.709164 ACATCAAGATCTTGTGGGAGAAAAG 59.291 40.000 29.80 11.54 41.16 2.27
1479 1522 4.655963 TCAAGATCTTGTGGGAGAAAAGG 58.344 43.478 29.80 4.99 41.16 3.11
1480 1523 4.350816 TCAAGATCTTGTGGGAGAAAAGGA 59.649 41.667 29.80 7.78 41.16 3.36
1481 1524 5.014544 TCAAGATCTTGTGGGAGAAAAGGAT 59.985 40.000 29.80 0.00 41.16 3.24
1482 1525 4.853007 AGATCTTGTGGGAGAAAAGGATG 58.147 43.478 0.00 0.00 0.00 3.51
1483 1526 4.537688 AGATCTTGTGGGAGAAAAGGATGA 59.462 41.667 0.00 0.00 0.00 2.92
1484 1527 4.722526 TCTTGTGGGAGAAAAGGATGAA 57.277 40.909 0.00 0.00 0.00 2.57
1485 1528 4.655963 TCTTGTGGGAGAAAAGGATGAAG 58.344 43.478 0.00 0.00 0.00 3.02
1486 1529 3.439857 TGTGGGAGAAAAGGATGAAGG 57.560 47.619 0.00 0.00 0.00 3.46
1487 1530 2.986019 TGTGGGAGAAAAGGATGAAGGA 59.014 45.455 0.00 0.00 0.00 3.36
1488 1531 3.009473 TGTGGGAGAAAAGGATGAAGGAG 59.991 47.826 0.00 0.00 0.00 3.69
1489 1532 2.578021 TGGGAGAAAAGGATGAAGGAGG 59.422 50.000 0.00 0.00 0.00 4.30
1490 1533 2.092158 GGGAGAAAAGGATGAAGGAGGG 60.092 54.545 0.00 0.00 0.00 4.30
1491 1534 2.846827 GGAGAAAAGGATGAAGGAGGGA 59.153 50.000 0.00 0.00 0.00 4.20
1492 1535 3.267031 GGAGAAAAGGATGAAGGAGGGAA 59.733 47.826 0.00 0.00 0.00 3.97
1493 1536 4.522114 GAGAAAAGGATGAAGGAGGGAAG 58.478 47.826 0.00 0.00 0.00 3.46
1494 1537 3.268072 AGAAAAGGATGAAGGAGGGAAGG 59.732 47.826 0.00 0.00 0.00 3.46
1495 1538 0.922626 AAGGATGAAGGAGGGAAGGC 59.077 55.000 0.00 0.00 0.00 4.35
1496 1539 0.990818 AGGATGAAGGAGGGAAGGCC 60.991 60.000 0.00 0.00 0.00 5.19
1497 1540 0.990818 GGATGAAGGAGGGAAGGCCT 60.991 60.000 0.00 0.00 35.61 5.19
1498 1541 0.922626 GATGAAGGAGGGAAGGCCTT 59.077 55.000 20.65 20.65 46.74 4.35
1499 1542 2.127708 GATGAAGGAGGGAAGGCCTTA 58.872 52.381 20.54 0.00 44.23 2.69
1500 1543 2.286935 TGAAGGAGGGAAGGCCTTAT 57.713 50.000 20.54 7.60 44.23 1.73
1501 1544 2.127708 TGAAGGAGGGAAGGCCTTATC 58.872 52.381 20.54 16.41 44.23 1.75
1502 1545 2.293856 TGAAGGAGGGAAGGCCTTATCT 60.294 50.000 20.54 18.47 44.23 1.98
1503 1546 1.813102 AGGAGGGAAGGCCTTATCTG 58.187 55.000 20.54 0.00 0.00 2.90
1504 1547 0.109532 GGAGGGAAGGCCTTATCTGC 59.890 60.000 20.54 19.24 0.00 4.26
1505 1548 0.839946 GAGGGAAGGCCTTATCTGCA 59.160 55.000 20.54 0.00 0.00 4.41
1506 1549 1.212935 GAGGGAAGGCCTTATCTGCAA 59.787 52.381 20.54 0.00 0.00 4.08
1507 1550 1.640670 AGGGAAGGCCTTATCTGCAAA 59.359 47.619 20.54 0.00 0.00 3.68
1508 1551 2.245806 AGGGAAGGCCTTATCTGCAAAT 59.754 45.455 20.54 0.00 0.00 2.32
1509 1552 2.363359 GGGAAGGCCTTATCTGCAAATG 59.637 50.000 20.54 0.00 0.00 2.32
1510 1553 3.026694 GGAAGGCCTTATCTGCAAATGT 58.973 45.455 20.54 0.00 0.00 2.71
1511 1554 3.181483 GGAAGGCCTTATCTGCAAATGTG 60.181 47.826 20.54 0.00 0.00 3.21
1512 1555 2.381911 AGGCCTTATCTGCAAATGTGG 58.618 47.619 0.00 0.00 0.00 4.17
1513 1556 2.025037 AGGCCTTATCTGCAAATGTGGA 60.025 45.455 0.00 0.00 0.00 4.02
1514 1557 2.360165 GGCCTTATCTGCAAATGTGGAG 59.640 50.000 0.00 0.00 44.23 3.86
1519 1562 2.775911 TCTGCAAATGTGGAGAGGAG 57.224 50.000 2.39 0.00 46.25 3.69
1520 1563 1.980765 TCTGCAAATGTGGAGAGGAGT 59.019 47.619 2.39 0.00 46.25 3.85
1521 1564 2.082231 CTGCAAATGTGGAGAGGAGTG 58.918 52.381 0.00 0.00 45.65 3.51
1522 1565 0.807496 GCAAATGTGGAGAGGAGTGC 59.193 55.000 0.00 0.00 0.00 4.40
1523 1566 1.081892 CAAATGTGGAGAGGAGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
1524 1567 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
1525 1568 1.903877 AATGTGGAGAGGAGTGCGGG 61.904 60.000 0.00 0.00 0.00 6.13
1526 1569 2.997897 GTGGAGAGGAGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
1527 1570 1.681327 GTGGAGAGGAGTGCGGGTA 60.681 63.158 0.00 0.00 0.00 3.69
1528 1571 1.077805 TGGAGAGGAGTGCGGGTAA 59.922 57.895 0.00 0.00 0.00 2.85
1529 1572 0.543410 TGGAGAGGAGTGCGGGTAAA 60.543 55.000 0.00 0.00 0.00 2.01
1530 1573 0.831307 GGAGAGGAGTGCGGGTAAAT 59.169 55.000 0.00 0.00 0.00 1.40
1531 1574 1.209747 GGAGAGGAGTGCGGGTAAATT 59.790 52.381 0.00 0.00 0.00 1.82
1532 1575 2.280628 GAGAGGAGTGCGGGTAAATTG 58.719 52.381 0.00 0.00 0.00 2.32
1533 1576 1.628846 AGAGGAGTGCGGGTAAATTGT 59.371 47.619 0.00 0.00 0.00 2.71
1534 1577 2.007608 GAGGAGTGCGGGTAAATTGTC 58.992 52.381 0.00 0.00 0.00 3.18
1535 1578 1.349688 AGGAGTGCGGGTAAATTGTCA 59.650 47.619 0.00 0.00 0.00 3.58
1536 1579 2.026262 AGGAGTGCGGGTAAATTGTCAT 60.026 45.455 0.00 0.00 0.00 3.06
1537 1580 3.199071 AGGAGTGCGGGTAAATTGTCATA 59.801 43.478 0.00 0.00 0.00 2.15
1538 1581 3.560068 GGAGTGCGGGTAAATTGTCATAG 59.440 47.826 0.00 0.00 0.00 2.23
1539 1582 4.189231 GAGTGCGGGTAAATTGTCATAGT 58.811 43.478 0.00 0.00 0.00 2.12
1540 1583 4.585879 AGTGCGGGTAAATTGTCATAGTT 58.414 39.130 0.00 0.00 0.00 2.24
1541 1584 5.007682 AGTGCGGGTAAATTGTCATAGTTT 58.992 37.500 0.00 0.00 0.00 2.66
1542 1585 5.475564 AGTGCGGGTAAATTGTCATAGTTTT 59.524 36.000 0.00 0.00 0.00 2.43
1543 1586 5.798434 GTGCGGGTAAATTGTCATAGTTTTC 59.202 40.000 0.00 0.00 0.00 2.29
1544 1587 5.708230 TGCGGGTAAATTGTCATAGTTTTCT 59.292 36.000 0.00 0.00 0.00 2.52
1545 1588 6.207810 TGCGGGTAAATTGTCATAGTTTTCTT 59.792 34.615 0.00 0.00 0.00 2.52
1546 1589 6.745907 GCGGGTAAATTGTCATAGTTTTCTTC 59.254 38.462 0.00 0.00 0.00 2.87
1547 1590 7.248437 CGGGTAAATTGTCATAGTTTTCTTCC 58.752 38.462 0.00 0.00 0.00 3.46
1548 1591 7.120726 CGGGTAAATTGTCATAGTTTTCTTCCT 59.879 37.037 0.00 0.00 0.00 3.36
1549 1592 9.457436 GGGTAAATTGTCATAGTTTTCTTCCTA 57.543 33.333 0.00 0.00 0.00 2.94
1553 1596 8.438676 AATTGTCATAGTTTTCTTCCTATCCG 57.561 34.615 0.00 0.00 0.00 4.18
1554 1597 6.540438 TGTCATAGTTTTCTTCCTATCCGT 57.460 37.500 0.00 0.00 0.00 4.69
1555 1598 6.942976 TGTCATAGTTTTCTTCCTATCCGTT 58.057 36.000 0.00 0.00 0.00 4.44
1556 1599 8.070034 TGTCATAGTTTTCTTCCTATCCGTTA 57.930 34.615 0.00 0.00 0.00 3.18
1557 1600 8.195436 TGTCATAGTTTTCTTCCTATCCGTTAG 58.805 37.037 0.00 0.00 0.00 2.34
1558 1601 8.411683 GTCATAGTTTTCTTCCTATCCGTTAGA 58.588 37.037 0.00 0.00 0.00 2.10
1559 1602 9.144298 TCATAGTTTTCTTCCTATCCGTTAGAT 57.856 33.333 0.00 0.00 39.15 1.98
1567 1610 8.890124 TCTTCCTATCCGTTAGATATAGATCG 57.110 38.462 0.00 0.00 36.84 3.69
1568 1611 7.932491 TCTTCCTATCCGTTAGATATAGATCGG 59.068 40.741 0.00 0.00 36.84 4.18
1573 1616 3.937874 CGTTAGATATAGATCGGACGGC 58.062 50.000 15.93 0.00 39.49 5.68
1574 1617 3.242673 CGTTAGATATAGATCGGACGGCC 60.243 52.174 15.93 0.00 39.49 6.13
1575 1618 2.810870 AGATATAGATCGGACGGCCT 57.189 50.000 5.33 0.00 37.15 5.19
1576 1619 3.928005 AGATATAGATCGGACGGCCTA 57.072 47.619 5.33 0.00 37.15 3.93
1577 1620 4.440826 AGATATAGATCGGACGGCCTAT 57.559 45.455 5.33 0.00 37.15 2.57
1578 1621 5.563876 AGATATAGATCGGACGGCCTATA 57.436 43.478 5.33 0.25 37.15 1.31
1579 1622 6.129414 AGATATAGATCGGACGGCCTATAT 57.871 41.667 5.33 6.08 37.45 0.86
1580 1623 6.544650 AGATATAGATCGGACGGCCTATATT 58.455 40.000 5.33 0.00 35.87 1.28
1581 1624 4.920640 ATAGATCGGACGGCCTATATTG 57.079 45.455 5.33 0.00 0.00 1.90
1582 1625 1.204941 AGATCGGACGGCCTATATTGC 59.795 52.381 5.33 0.00 0.00 3.56
1583 1626 0.973632 ATCGGACGGCCTATATTGCA 59.026 50.000 5.33 0.00 0.00 4.08
1584 1627 0.317160 TCGGACGGCCTATATTGCAG 59.683 55.000 5.33 0.00 0.00 4.41
1585 1628 0.670546 CGGACGGCCTATATTGCAGG 60.671 60.000 5.33 0.00 36.16 4.85
1586 1629 0.685097 GGACGGCCTATATTGCAGGA 59.315 55.000 0.00 0.00 34.91 3.86
1587 1630 1.279271 GGACGGCCTATATTGCAGGAT 59.721 52.381 0.00 0.00 34.91 3.24
1588 1631 2.350522 GACGGCCTATATTGCAGGATG 58.649 52.381 0.00 0.00 34.91 3.51
1589 1632 1.003580 ACGGCCTATATTGCAGGATGG 59.996 52.381 0.00 0.00 34.91 3.51
1590 1633 1.467920 GGCCTATATTGCAGGATGGC 58.532 55.000 0.00 10.13 34.91 4.40
1591 1634 1.272092 GGCCTATATTGCAGGATGGCA 60.272 52.381 17.22 0.00 43.19 4.92
1592 1635 2.089980 GCCTATATTGCAGGATGGCAG 58.910 52.381 12.68 0.00 45.88 4.85
1593 1636 2.553904 GCCTATATTGCAGGATGGCAGT 60.554 50.000 12.68 0.00 45.88 4.40
1594 1637 3.341823 CCTATATTGCAGGATGGCAGTC 58.658 50.000 0.00 0.00 45.88 3.51
1595 1638 3.244665 CCTATATTGCAGGATGGCAGTCA 60.245 47.826 0.00 0.00 45.88 3.41
1596 1639 2.042686 TATTGCAGGATGGCAGTCAC 57.957 50.000 0.00 0.00 45.88 3.67
1597 1640 0.038599 ATTGCAGGATGGCAGTCACA 59.961 50.000 0.00 0.00 45.88 3.58
1598 1641 0.890542 TTGCAGGATGGCAGTCACAC 60.891 55.000 0.00 0.00 45.88 3.82
1599 1642 2.042831 GCAGGATGGCAGTCACACC 61.043 63.158 0.00 0.00 35.86 4.16
1600 1643 1.376086 CAGGATGGCAGTCACACCA 59.624 57.895 0.00 0.00 41.06 4.17
1605 1648 2.048444 ATGGCAGTCACACCATCATC 57.952 50.000 0.00 0.00 43.26 2.92
1606 1649 0.691904 TGGCAGTCACACCATCATCA 59.308 50.000 0.00 0.00 0.00 3.07
1607 1650 1.089920 GGCAGTCACACCATCATCAC 58.910 55.000 0.00 0.00 0.00 3.06
1608 1651 1.089920 GCAGTCACACCATCATCACC 58.910 55.000 0.00 0.00 0.00 4.02
1609 1652 1.611410 GCAGTCACACCATCATCACCA 60.611 52.381 0.00 0.00 0.00 4.17
1610 1653 2.781923 CAGTCACACCATCATCACCAA 58.218 47.619 0.00 0.00 0.00 3.67
1611 1654 2.485426 CAGTCACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
1612 1655 2.373169 AGTCACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
1613 1656 2.744202 GTCACACCATCATCACCAACTC 59.256 50.000 0.00 0.00 0.00 3.01
1614 1657 2.639347 TCACACCATCATCACCAACTCT 59.361 45.455 0.00 0.00 0.00 3.24
1615 1658 2.745821 CACACCATCATCACCAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
1616 1659 1.741706 CACCATCATCACCAACTCTGC 59.258 52.381 0.00 0.00 0.00 4.26
1617 1660 1.632409 ACCATCATCACCAACTCTGCT 59.368 47.619 0.00 0.00 0.00 4.24
1618 1661 2.040813 ACCATCATCACCAACTCTGCTT 59.959 45.455 0.00 0.00 0.00 3.91
1619 1662 3.087031 CCATCATCACCAACTCTGCTTT 58.913 45.455 0.00 0.00 0.00 3.51
1620 1663 3.508793 CCATCATCACCAACTCTGCTTTT 59.491 43.478 0.00 0.00 0.00 2.27
1621 1664 4.021719 CCATCATCACCAACTCTGCTTTTT 60.022 41.667 0.00 0.00 0.00 1.94
1622 1665 5.183713 CCATCATCACCAACTCTGCTTTTTA 59.816 40.000 0.00 0.00 0.00 1.52
1623 1666 6.127535 CCATCATCACCAACTCTGCTTTTTAT 60.128 38.462 0.00 0.00 0.00 1.40
1624 1667 7.067372 CCATCATCACCAACTCTGCTTTTTATA 59.933 37.037 0.00 0.00 0.00 0.98
1625 1668 7.994425 TCATCACCAACTCTGCTTTTTATAA 57.006 32.000 0.00 0.00 0.00 0.98
1626 1669 8.044060 TCATCACCAACTCTGCTTTTTATAAG 57.956 34.615 0.00 0.00 0.00 1.73
1627 1670 7.882791 TCATCACCAACTCTGCTTTTTATAAGA 59.117 33.333 0.00 0.00 0.00 2.10
1628 1671 7.672983 TCACCAACTCTGCTTTTTATAAGAG 57.327 36.000 0.00 0.00 41.59 2.85
1630 1673 8.372459 TCACCAACTCTGCTTTTTATAAGAGTA 58.628 33.333 4.72 0.00 46.64 2.59
1631 1674 8.660373 CACCAACTCTGCTTTTTATAAGAGTAG 58.340 37.037 4.72 6.39 46.64 2.57
1632 1675 8.594550 ACCAACTCTGCTTTTTATAAGAGTAGA 58.405 33.333 13.89 13.89 46.64 2.59
1633 1676 9.606631 CCAACTCTGCTTTTTATAAGAGTAGAT 57.393 33.333 14.55 4.11 46.64 1.98
1648 1691 6.658188 AGAGTAGATTACCTCTTGTATGGC 57.342 41.667 0.00 0.00 35.28 4.40
1649 1692 6.136857 AGAGTAGATTACCTCTTGTATGGCA 58.863 40.000 0.00 0.00 35.28 4.92
1650 1693 6.611642 AGAGTAGATTACCTCTTGTATGGCAA 59.388 38.462 0.00 0.00 35.28 4.52
1651 1694 7.291182 AGAGTAGATTACCTCTTGTATGGCAAT 59.709 37.037 0.00 0.00 36.36 3.56
1652 1695 7.806180 AGTAGATTACCTCTTGTATGGCAATT 58.194 34.615 0.00 0.00 36.36 2.32
1653 1696 8.275040 AGTAGATTACCTCTTGTATGGCAATTT 58.725 33.333 0.00 0.00 36.36 1.82
1654 1697 7.338800 AGATTACCTCTTGTATGGCAATTTG 57.661 36.000 0.00 0.00 36.36 2.32
1655 1698 3.874392 ACCTCTTGTATGGCAATTTGC 57.126 42.857 13.04 13.04 44.08 3.68
1671 1714 7.007313 GCAATTTGCACATGCTTTATAATGT 57.993 32.000 16.35 0.00 44.26 2.71
1672 1715 7.465989 GCAATTTGCACATGCTTTATAATGTT 58.534 30.769 16.35 0.00 44.26 2.71
1673 1716 8.602328 GCAATTTGCACATGCTTTATAATGTTA 58.398 29.630 16.35 0.00 44.26 2.41
1678 1721 9.743057 TTGCACATGCTTTATAATGTTATTACC 57.257 29.630 5.31 0.00 42.66 2.85
1679 1722 9.130661 TGCACATGCTTTATAATGTTATTACCT 57.869 29.630 5.31 0.00 42.66 3.08
1680 1723 9.612620 GCACATGCTTTATAATGTTATTACCTC 57.387 33.333 0.00 0.00 34.81 3.85
1713 1756 9.299963 GACAATTTGCACATGCTTTATAATGTA 57.700 29.630 5.31 0.00 42.66 2.29
1786 1829 9.995003 AGAACTTATTGGCATTTCAACATTTTA 57.005 25.926 0.00 0.00 0.00 1.52
1857 1900 0.886563 AACCTCTTGATGCTTGCAGC 59.113 50.000 3.72 3.72 42.82 5.25
1865 1908 0.465824 GATGCTTGCAGCCCTCTGAT 60.466 55.000 0.00 0.00 42.95 2.90
1884 1927 4.894784 TGATAAAGAAAGCAGTCGAAGGT 58.105 39.130 0.00 0.00 0.00 3.50
1902 1945 0.889994 GTCCTGCATCACCATTTGCA 59.110 50.000 0.00 0.00 46.03 4.08
2031 2074 7.259290 TGTTTCAAGTAATGTTCCTTGACTC 57.741 36.000 0.91 0.00 44.88 3.36
2053 2096 3.077359 CTCCTTTTGGTCCTGACATCAC 58.923 50.000 0.00 0.00 41.38 3.06
2158 2201 6.869206 TGGTAGCTAAACATTAGAGAGGTT 57.131 37.500 0.00 0.00 0.00 3.50
2160 2203 8.370266 TGGTAGCTAAACATTAGAGAGGTTAA 57.630 34.615 0.00 0.00 0.00 2.01
2384 2431 2.342354 GTGCGCACATATTTTCAACAGC 59.658 45.455 34.52 1.23 0.00 4.40
2442 2489 4.887655 TCATCCGGTATCGACATATATGCT 59.112 41.667 12.79 0.27 39.00 3.79
2480 2527 2.483013 CGTCAGGAGAGGTGTTGAAACA 60.483 50.000 0.00 0.00 36.38 2.83
2592 2639 2.746362 GCTTGCTATGTCTGCTGTTCTT 59.254 45.455 0.00 0.00 0.00 2.52
2944 2994 7.615403 TCTGTCTACTAGTCATTGCTGATTTT 58.385 34.615 0.00 0.00 32.98 1.82
2947 2997 9.719355 TGTCTACTAGTCATTGCTGATTTTAAA 57.281 29.630 0.00 0.00 32.98 1.52
3068 3120 8.405531 CACATAATACCCCTTTGTATGTTTGAG 58.594 37.037 0.00 0.00 34.07 3.02
3069 3121 8.333235 ACATAATACCCCTTTGTATGTTTGAGA 58.667 33.333 0.00 0.00 32.77 3.27
3234 3289 7.555965 AGCTTTCTTTATTTTTCAACCAGTGT 58.444 30.769 0.00 0.00 0.00 3.55
3355 3410 4.643463 TGCAAATGCTGGAATGTCAAATT 58.357 34.783 6.97 0.00 42.66 1.82
3402 3457 4.012374 TGCTTTCTTCTGCTATTCCCTTG 58.988 43.478 0.00 0.00 0.00 3.61
3530 3585 4.047166 TCCAATTCCAGTATCCTCCACAT 58.953 43.478 0.00 0.00 0.00 3.21
3551 3606 1.401552 CCGTAACCCATGCAGATGTTG 59.598 52.381 7.54 0.00 0.00 3.33
3629 3684 1.557099 TCGCCATGGTCTAACACTCT 58.443 50.000 14.67 0.00 0.00 3.24
3631 3686 1.204704 CGCCATGGTCTAACACTCTGA 59.795 52.381 14.67 0.00 0.00 3.27
3644 3699 0.036010 ACTCTGAACCTTGCATCCGG 60.036 55.000 0.00 0.00 0.00 5.14
3694 3749 1.067985 CGCCGATCAGCATCAGATACT 60.068 52.381 1.15 0.00 0.00 2.12
3705 3760 4.162888 AGCATCAGATACTCATCACCACAA 59.837 41.667 0.00 0.00 33.21 3.33
3748 3803 7.308435 CAGATTTTCTGGACAATTTGTAGGTC 58.692 38.462 1.15 0.00 40.71 3.85
3794 3849 5.777732 AGAACGGATCTCCAAGCTATTATCT 59.222 40.000 0.00 0.00 30.46 1.98
3837 3892 1.148157 CTTACCTGAGGCATCGCACG 61.148 60.000 0.00 0.00 0.00 5.34
3939 3994 3.243334 CGAGTCTATCAGCTTCAGCATCA 60.243 47.826 0.75 0.00 45.16 3.07
4000 4055 5.047731 CCCGATTCTGATGTGAGCTTATCTA 60.048 44.000 0.00 0.00 0.00 1.98
4060 4115 3.081804 CCCTTACAGGTTCACCATTGAC 58.918 50.000 0.00 0.00 38.89 3.18
4097 4152 6.085555 TGTTACCATAGAATAAGCTCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
4098 4153 3.669251 ACCATAGAATAAGCTCTCCGC 57.331 47.619 0.00 0.00 39.57 5.54
4100 4155 2.600731 CATAGAATAAGCTCTCCGCGG 58.399 52.381 22.12 22.12 45.59 6.46
4101 4156 0.314302 TAGAATAAGCTCTCCGCGGC 59.686 55.000 23.51 8.95 45.59 6.53
4102 4157 1.956678 GAATAAGCTCTCCGCGGCC 60.957 63.158 23.51 8.62 45.59 6.13
4103 4158 3.792053 AATAAGCTCTCCGCGGCCG 62.792 63.158 24.05 24.05 45.59 6.13
4133 4203 2.421073 TGAAGCGGATTTGAATGAGCAG 59.579 45.455 0.00 0.00 0.00 4.24
4151 4221 1.077858 GAAGGGAGCTGCCTGGAAG 60.078 63.158 29.25 0.00 36.66 3.46
4154 4224 1.077858 GGGAGCTGCCTGGAAGAAG 60.078 63.158 18.47 0.00 34.07 2.85
4191 4314 5.351740 GTGACCTTTAATCTGACCAACTAGC 59.648 44.000 0.00 0.00 0.00 3.42
4192 4315 5.248477 TGACCTTTAATCTGACCAACTAGCT 59.752 40.000 0.00 0.00 0.00 3.32
4193 4316 5.491982 ACCTTTAATCTGACCAACTAGCTG 58.508 41.667 0.00 0.00 0.00 4.24
4194 4317 4.878397 CCTTTAATCTGACCAACTAGCTGG 59.122 45.833 10.75 10.75 42.68 4.85
4195 4318 4.487714 TTAATCTGACCAACTAGCTGGG 57.512 45.455 16.48 5.32 41.16 4.45
4196 4319 2.254152 ATCTGACCAACTAGCTGGGA 57.746 50.000 16.48 4.76 41.16 4.37
4197 4320 2.024176 TCTGACCAACTAGCTGGGAA 57.976 50.000 16.48 3.32 41.16 3.97
4198 4321 1.623811 TCTGACCAACTAGCTGGGAAC 59.376 52.381 16.48 7.95 41.16 3.62
4213 4336 2.951229 GGAACCTTGGAAGACTGGAA 57.049 50.000 0.00 0.00 0.00 3.53
4214 4337 3.223674 GGAACCTTGGAAGACTGGAAA 57.776 47.619 0.00 0.00 0.00 3.13
4215 4338 3.767711 GGAACCTTGGAAGACTGGAAAT 58.232 45.455 0.00 0.00 0.00 2.17
4216 4339 3.507622 GGAACCTTGGAAGACTGGAAATG 59.492 47.826 0.00 0.00 0.00 2.32
4217 4340 4.398319 GAACCTTGGAAGACTGGAAATGA 58.602 43.478 0.00 0.00 0.00 2.57
4218 4341 3.756117 ACCTTGGAAGACTGGAAATGAC 58.244 45.455 0.00 0.00 0.00 3.06
4219 4342 3.395941 ACCTTGGAAGACTGGAAATGACT 59.604 43.478 0.00 0.00 0.00 3.41
4220 4343 4.006319 CCTTGGAAGACTGGAAATGACTC 58.994 47.826 0.00 0.00 0.00 3.36
4221 4344 4.263243 CCTTGGAAGACTGGAAATGACTCT 60.263 45.833 0.00 0.00 0.00 3.24
4222 4345 4.277515 TGGAAGACTGGAAATGACTCTG 57.722 45.455 0.00 0.00 0.00 3.35
4223 4346 3.006247 GGAAGACTGGAAATGACTCTGC 58.994 50.000 0.00 0.00 0.00 4.26
4224 4347 3.307339 GGAAGACTGGAAATGACTCTGCT 60.307 47.826 0.00 0.00 0.00 4.24
4225 4348 3.331478 AGACTGGAAATGACTCTGCTG 57.669 47.619 0.00 0.00 0.00 4.41
4226 4349 2.902486 AGACTGGAAATGACTCTGCTGA 59.098 45.455 0.00 0.00 0.00 4.26
4227 4350 2.999355 GACTGGAAATGACTCTGCTGAC 59.001 50.000 0.00 0.00 0.00 3.51
4228 4351 2.289945 ACTGGAAATGACTCTGCTGACC 60.290 50.000 0.00 0.00 0.00 4.02
4229 4352 1.699083 TGGAAATGACTCTGCTGACCA 59.301 47.619 0.00 0.00 0.00 4.02
4230 4353 2.079925 GGAAATGACTCTGCTGACCAC 58.920 52.381 0.00 0.00 0.00 4.16
4231 4354 2.550855 GGAAATGACTCTGCTGACCACA 60.551 50.000 0.00 0.00 0.00 4.17
4232 4355 2.175878 AATGACTCTGCTGACCACAC 57.824 50.000 0.00 0.00 0.00 3.82
4233 4356 1.346062 ATGACTCTGCTGACCACACT 58.654 50.000 0.00 0.00 0.00 3.55
4234 4357 0.390492 TGACTCTGCTGACCACACTG 59.610 55.000 0.00 0.00 0.00 3.66
4235 4358 0.676184 GACTCTGCTGACCACACTGA 59.324 55.000 0.00 0.00 0.00 3.41
4236 4359 0.678395 ACTCTGCTGACCACACTGAG 59.322 55.000 0.00 0.00 0.00 3.35
4237 4360 0.678395 CTCTGCTGACCACACTGAGT 59.322 55.000 0.00 0.00 0.00 3.41
4238 4361 1.069823 CTCTGCTGACCACACTGAGTT 59.930 52.381 0.00 0.00 0.00 3.01
4239 4362 1.486310 TCTGCTGACCACACTGAGTTT 59.514 47.619 0.00 0.00 0.00 2.66
4240 4363 1.600957 CTGCTGACCACACTGAGTTTG 59.399 52.381 0.00 0.00 0.00 2.93
4355 4481 3.676324 GCCTTGTGCTAGTAAGATGACGT 60.676 47.826 0.00 0.00 36.87 4.34
4356 4482 4.439700 GCCTTGTGCTAGTAAGATGACGTA 60.440 45.833 0.00 0.00 36.87 3.57
4546 4672 0.878523 GGTTTTTGGTTGCCTTCGCC 60.879 55.000 0.00 0.00 0.00 5.54
4551 4677 0.827368 TTGGTTGCCTTCGCCTTTTT 59.173 45.000 0.00 0.00 0.00 1.94
4561 4687 3.506067 CCTTCGCCTTTTTGTATTGGAGT 59.494 43.478 0.00 0.00 0.00 3.85
4562 4688 4.022329 CCTTCGCCTTTTTGTATTGGAGTT 60.022 41.667 0.00 0.00 0.00 3.01
4563 4689 5.508994 CCTTCGCCTTTTTGTATTGGAGTTT 60.509 40.000 0.00 0.00 0.00 2.66
4636 4770 6.457799 CCCTAACCATACATAAAGAACGCAAC 60.458 42.308 0.00 0.00 0.00 4.17
4704 4840 7.370905 AGGTACACCTAAGACTGTAAAAAGT 57.629 36.000 0.00 0.00 46.48 2.66
4735 4871 1.986882 AAGAGTTTGGGGCAACTGAG 58.013 50.000 0.00 0.00 0.00 3.35
4744 4880 2.747855 GCAACTGAGGCTTCCCCG 60.748 66.667 0.00 0.00 39.21 5.73
4889 5029 3.822940 ACTTTCGTTGGTGTTGGGAATA 58.177 40.909 0.00 0.00 0.00 1.75
4902 5042 6.127897 GGTGTTGGGAATAAAGATGTCTTCTG 60.128 42.308 0.00 0.00 34.61 3.02
4928 5068 0.251916 GATGAACGGGTCCCACATGA 59.748 55.000 9.12 0.00 0.00 3.07
4973 5113 4.320202 GGCGATTCTAACTTTGCACTTTGA 60.320 41.667 0.00 0.00 0.00 2.69
4982 5122 0.179094 TTGCACTTTGACTCGACGGT 60.179 50.000 0.00 0.00 0.00 4.83
5004 5144 2.074547 GCACAATGCATATGGGATGC 57.925 50.000 13.24 2.55 44.26 3.91
5016 5156 3.616956 ATGGGATGCACTCCATATACG 57.383 47.619 18.00 0.00 46.98 3.06
5023 5163 3.431415 TGCACTCCATATACGAGGCTAT 58.569 45.455 0.00 0.00 0.00 2.97
5024 5164 3.444034 TGCACTCCATATACGAGGCTATC 59.556 47.826 0.00 0.00 0.00 2.08
5030 5170 8.079203 CACTCCATATACGAGGCTATCATTATC 58.921 40.741 0.00 0.00 0.00 1.75
5033 5173 2.264109 ACGAGGCTATCATTATCGCG 57.736 50.000 0.00 0.00 36.89 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.227674 GCGGTGCCTCTAGGGATTG 60.228 63.158 0.00 0.00 38.01 2.67
53 66 0.684805 GACCTCGTCCTGGACTGGAT 60.685 60.000 29.72 19.09 38.52 3.41
54 67 1.304217 GACCTCGTCCTGGACTGGA 60.304 63.158 29.72 18.80 31.75 3.86
55 68 2.701780 CGACCTCGTCCTGGACTGG 61.702 68.421 23.49 24.15 32.86 4.00
56 69 2.701780 CCGACCTCGTCCTGGACTG 61.702 68.421 23.49 16.69 37.74 3.51
57 70 2.361357 CCGACCTCGTCCTGGACT 60.361 66.667 23.49 5.63 37.74 3.85
58 71 3.450115 CCCGACCTCGTCCTGGAC 61.450 72.222 16.99 16.99 37.74 4.02
101 114 2.489938 TTAACTAGGCCCTGCAGTTG 57.510 50.000 13.81 4.44 34.48 3.16
103 116 3.518992 TTTTTAACTAGGCCCTGCAGT 57.481 42.857 13.81 0.00 0.00 4.40
104 117 3.381590 GGATTTTTAACTAGGCCCTGCAG 59.618 47.826 6.78 6.78 0.00 4.41
105 118 3.361786 GGATTTTTAACTAGGCCCTGCA 58.638 45.455 0.00 0.00 0.00 4.41
106 119 2.693591 GGGATTTTTAACTAGGCCCTGC 59.306 50.000 0.00 0.00 0.00 4.85
107 120 3.296854 GGGGATTTTTAACTAGGCCCTG 58.703 50.000 0.00 0.00 34.52 4.45
108 121 2.930405 TGGGGATTTTTAACTAGGCCCT 59.070 45.455 0.00 0.00 34.52 5.19
109 122 3.028850 GTGGGGATTTTTAACTAGGCCC 58.971 50.000 0.00 0.00 0.00 5.80
110 123 2.686405 CGTGGGGATTTTTAACTAGGCC 59.314 50.000 0.00 0.00 0.00 5.19
111 124 2.686405 CCGTGGGGATTTTTAACTAGGC 59.314 50.000 0.00 0.00 34.06 3.93
112 125 4.224991 TCCGTGGGGATTTTTAACTAGG 57.775 45.455 0.00 0.00 37.43 3.02
163 176 2.410053 GCTCGATCCGATATTTCAGTGC 59.590 50.000 0.00 0.00 34.61 4.40
193 206 0.388520 GAAATCGCAGGTTTGGTGGC 60.389 55.000 0.00 0.00 0.00 5.01
194 207 0.958091 TGAAATCGCAGGTTTGGTGG 59.042 50.000 0.00 0.00 0.00 4.61
195 208 2.791383 TTGAAATCGCAGGTTTGGTG 57.209 45.000 0.00 0.00 0.00 4.17
196 209 3.306019 GGAATTGAAATCGCAGGTTTGGT 60.306 43.478 0.00 0.00 0.00 3.67
375 388 1.516892 GGCTGTGAGGAGAGCAGAG 59.483 63.158 0.00 0.00 40.34 3.35
452 467 9.174166 CGAATCTAATCTTTAAAAAGGAGGGAA 57.826 33.333 2.77 0.00 36.67 3.97
492 515 3.924073 CGGCTATAAAAACTTGGCCAAAC 59.076 43.478 20.91 0.00 39.53 2.93
520 543 1.630244 CTAATAGCGGCGGCATCTGC 61.630 60.000 19.21 3.80 43.41 4.26
559 582 2.478539 CCAAAGGATTGCGCTTTAGCTC 60.479 50.000 9.73 0.00 38.13 4.09
568 592 0.173255 AATTCGGCCAAAGGATTGCG 59.827 50.000 2.24 0.00 35.10 4.85
571 595 1.901833 AGCAAATTCGGCCAAAGGATT 59.098 42.857 2.24 0.00 0.00 3.01
586 610 7.309194 GCCCAATAACTTAGAGAGAAAAGCAAA 60.309 37.037 0.00 0.00 0.00 3.68
686 711 3.373565 GCAACCTCGGCCCAAAGG 61.374 66.667 11.11 11.11 38.70 3.11
687 712 3.737172 CGCAACCTCGGCCCAAAG 61.737 66.667 0.00 0.00 0.00 2.77
688 713 4.572571 ACGCAACCTCGGCCCAAA 62.573 61.111 0.00 0.00 0.00 3.28
722 747 9.803315 AAACCTCTAAAATTGAGACAAAAGAAC 57.197 29.630 0.00 0.00 33.68 3.01
734 759 8.078596 CACAAAGGAGAGAAACCTCTAAAATTG 58.921 37.037 0.00 0.00 40.89 2.32
748 780 4.149598 TGTACTAGCACACAAAGGAGAGA 58.850 43.478 0.00 0.00 0.00 3.10
749 781 4.521130 TGTACTAGCACACAAAGGAGAG 57.479 45.455 0.00 0.00 0.00 3.20
791 826 5.696724 GCAGCAGGAACAATATCTACGTATT 59.303 40.000 0.00 0.00 0.00 1.89
795 830 3.492383 CAGCAGCAGGAACAATATCTACG 59.508 47.826 0.00 0.00 0.00 3.51
799 834 2.770699 GCAGCAGCAGGAACAATATC 57.229 50.000 0.00 0.00 41.58 1.63
826 865 3.885724 AACCAAAAACCAGGAACAGTG 57.114 42.857 0.00 0.00 0.00 3.66
833 872 2.104622 AGCCATCAAACCAAAAACCAGG 59.895 45.455 0.00 0.00 0.00 4.45
911 950 1.529865 GTAAACCTGCGAGACAACACC 59.470 52.381 0.00 0.00 0.00 4.16
930 969 0.110486 ACGGGCCAAATGAGAACTGT 59.890 50.000 4.39 0.00 0.00 3.55
931 970 0.804989 GACGGGCCAAATGAGAACTG 59.195 55.000 4.39 0.00 0.00 3.16
946 985 0.600255 AGAAGAGCAAACACCGACGG 60.600 55.000 13.61 13.61 0.00 4.79
947 986 0.784778 GAGAAGAGCAAACACCGACG 59.215 55.000 0.00 0.00 0.00 5.12
969 1008 2.452600 TCCTTTCCTTTGGTGCAACT 57.547 45.000 2.04 0.00 36.74 3.16
999 1039 2.154462 CCTCTTCTTGCACGGTTCATT 58.846 47.619 0.00 0.00 0.00 2.57
1034 1074 0.108186 CACTGCGCATAACCAGAGGA 60.108 55.000 12.24 0.00 33.40 3.71
1277 1320 4.699735 ACACGACAAGCAATCAATCCATTA 59.300 37.500 0.00 0.00 0.00 1.90
1284 1327 1.020437 TGCACACGACAAGCAATCAA 58.980 45.000 0.00 0.00 34.97 2.57
1297 1340 3.933332 GTCTTAACTACCAGGATGCACAC 59.067 47.826 0.00 0.00 31.97 3.82
1298 1341 3.838317 AGTCTTAACTACCAGGATGCACA 59.162 43.478 0.00 0.00 32.59 4.57
1316 1359 3.383185 GCAGCACTTCCAGATACTAGTCT 59.617 47.826 0.00 0.00 0.00 3.24
1326 1369 4.702131 AGGTAATAAAAGCAGCACTTCCAG 59.298 41.667 0.00 0.00 37.75 3.86
1330 1373 5.770162 ACAAGAGGTAATAAAAGCAGCACTT 59.230 36.000 0.00 0.00 41.70 3.16
1397 1440 8.256605 ACATTATAAAGCATGTACAAATTGCCA 58.743 29.630 14.73 3.38 37.07 4.92
1398 1441 8.647143 ACATTATAAAGCATGTACAAATTGCC 57.353 30.769 14.73 0.19 37.07 4.52
1405 1448 9.825109 TGCTAGTAACATTATAAAGCATGTACA 57.175 29.630 0.00 0.00 33.84 2.90
1408 1451 9.613428 TCTTGCTAGTAACATTATAAAGCATGT 57.387 29.630 13.96 2.50 38.21 3.21
1411 1454 8.559536 GCATCTTGCTAGTAACATTATAAAGCA 58.440 33.333 2.38 2.38 40.96 3.91
1412 1455 8.017946 GGCATCTTGCTAGTAACATTATAAAGC 58.982 37.037 0.00 0.00 44.28 3.51
1413 1456 8.507249 GGGCATCTTGCTAGTAACATTATAAAG 58.493 37.037 0.00 0.00 44.28 1.85
1414 1457 7.172532 CGGGCATCTTGCTAGTAACATTATAAA 59.827 37.037 0.00 0.00 44.28 1.40
1415 1458 6.649141 CGGGCATCTTGCTAGTAACATTATAA 59.351 38.462 0.00 0.00 44.28 0.98
1416 1459 6.163476 CGGGCATCTTGCTAGTAACATTATA 58.837 40.000 0.00 0.00 44.28 0.98
1417 1460 4.997395 CGGGCATCTTGCTAGTAACATTAT 59.003 41.667 0.00 0.00 44.28 1.28
1418 1461 4.141801 ACGGGCATCTTGCTAGTAACATTA 60.142 41.667 0.00 0.00 44.28 1.90
1419 1462 3.206150 CGGGCATCTTGCTAGTAACATT 58.794 45.455 0.00 0.00 44.28 2.71
1420 1463 2.170607 ACGGGCATCTTGCTAGTAACAT 59.829 45.455 0.00 0.00 44.28 2.71
1421 1464 1.553248 ACGGGCATCTTGCTAGTAACA 59.447 47.619 0.00 0.00 44.28 2.41
1422 1465 1.933853 CACGGGCATCTTGCTAGTAAC 59.066 52.381 0.00 0.00 44.28 2.50
1423 1466 1.742411 GCACGGGCATCTTGCTAGTAA 60.742 52.381 3.77 0.00 44.28 2.24
1424 1467 0.179084 GCACGGGCATCTTGCTAGTA 60.179 55.000 3.77 0.00 44.28 1.82
1425 1468 1.450312 GCACGGGCATCTTGCTAGT 60.450 57.895 3.77 0.00 44.28 2.57
1426 1469 2.528743 CGCACGGGCATCTTGCTAG 61.529 63.158 11.77 0.00 44.28 3.42
1427 1470 2.511373 CGCACGGGCATCTTGCTA 60.511 61.111 11.77 0.00 44.28 3.49
1428 1471 4.704833 ACGCACGGGCATCTTGCT 62.705 61.111 11.77 0.00 44.28 3.91
1429 1472 3.737172 AACGCACGGGCATCTTGC 61.737 61.111 11.77 0.00 44.08 4.01
1430 1473 2.176546 CAACGCACGGGCATCTTG 59.823 61.111 11.77 3.62 41.24 3.02
1431 1474 3.737172 GCAACGCACGGGCATCTT 61.737 61.111 11.77 0.00 41.24 2.40
1433 1476 3.814268 ATGCAACGCACGGGCATC 61.814 61.111 11.77 0.00 44.41 3.91
1437 1480 3.361158 TTCCATGCAACGCACGGG 61.361 61.111 0.72 1.92 42.60 5.28
1438 1481 2.126888 GTTCCATGCAACGCACGG 60.127 61.111 0.00 0.00 43.82 4.94
1439 1482 0.794229 GATGTTCCATGCAACGCACG 60.794 55.000 0.00 0.00 43.04 5.34
1440 1483 0.240678 TGATGTTCCATGCAACGCAC 59.759 50.000 0.00 0.00 43.04 5.34
1441 1484 0.957362 TTGATGTTCCATGCAACGCA 59.043 45.000 0.00 0.00 44.86 5.24
1442 1485 1.199789 TCTTGATGTTCCATGCAACGC 59.800 47.619 0.00 0.00 0.00 4.84
1443 1486 3.376234 AGATCTTGATGTTCCATGCAACG 59.624 43.478 0.00 0.00 0.00 4.10
1444 1487 4.978083 AGATCTTGATGTTCCATGCAAC 57.022 40.909 0.00 0.00 0.00 4.17
1445 1488 4.768448 ACAAGATCTTGATGTTCCATGCAA 59.232 37.500 36.15 0.00 42.93 4.08
1446 1489 4.157105 CACAAGATCTTGATGTTCCATGCA 59.843 41.667 36.15 0.00 42.93 3.96
1447 1490 4.439700 CCACAAGATCTTGATGTTCCATGC 60.440 45.833 36.15 0.00 42.93 4.06
1448 1491 4.097437 CCCACAAGATCTTGATGTTCCATG 59.903 45.833 36.15 22.22 42.93 3.66
1449 1492 4.018141 TCCCACAAGATCTTGATGTTCCAT 60.018 41.667 36.15 13.01 42.93 3.41
1450 1493 3.330405 TCCCACAAGATCTTGATGTTCCA 59.670 43.478 36.15 13.76 42.93 3.53
1451 1494 3.944015 CTCCCACAAGATCTTGATGTTCC 59.056 47.826 36.15 0.00 42.93 3.62
1452 1495 4.836825 TCTCCCACAAGATCTTGATGTTC 58.163 43.478 36.15 0.00 42.93 3.18
1453 1496 4.916041 TCTCCCACAAGATCTTGATGTT 57.084 40.909 36.15 15.47 42.93 2.71
1454 1497 4.916041 TTCTCCCACAAGATCTTGATGT 57.084 40.909 36.15 16.75 42.93 3.06
1455 1498 5.125097 CCTTTTCTCCCACAAGATCTTGATG 59.875 44.000 36.15 27.70 42.93 3.07
1456 1499 5.014544 TCCTTTTCTCCCACAAGATCTTGAT 59.985 40.000 36.15 20.22 42.93 2.57
1457 1500 4.350816 TCCTTTTCTCCCACAAGATCTTGA 59.649 41.667 36.15 16.73 42.93 3.02
1458 1501 4.655963 TCCTTTTCTCCCACAAGATCTTG 58.344 43.478 29.74 29.74 45.58 3.02
1459 1502 5.014544 TCATCCTTTTCTCCCACAAGATCTT 59.985 40.000 0.88 0.88 0.00 2.40
1460 1503 4.537688 TCATCCTTTTCTCCCACAAGATCT 59.462 41.667 0.00 0.00 0.00 2.75
1461 1504 4.848357 TCATCCTTTTCTCCCACAAGATC 58.152 43.478 0.00 0.00 0.00 2.75
1462 1505 4.934797 TCATCCTTTTCTCCCACAAGAT 57.065 40.909 0.00 0.00 0.00 2.40
1463 1506 4.507335 CCTTCATCCTTTTCTCCCACAAGA 60.507 45.833 0.00 0.00 0.00 3.02
1464 1507 3.760684 CCTTCATCCTTTTCTCCCACAAG 59.239 47.826 0.00 0.00 0.00 3.16
1465 1508 3.397618 TCCTTCATCCTTTTCTCCCACAA 59.602 43.478 0.00 0.00 0.00 3.33
1466 1509 2.986019 TCCTTCATCCTTTTCTCCCACA 59.014 45.455 0.00 0.00 0.00 4.17
1467 1510 3.615155 CTCCTTCATCCTTTTCTCCCAC 58.385 50.000 0.00 0.00 0.00 4.61
1468 1511 2.578021 CCTCCTTCATCCTTTTCTCCCA 59.422 50.000 0.00 0.00 0.00 4.37
1469 1512 2.092158 CCCTCCTTCATCCTTTTCTCCC 60.092 54.545 0.00 0.00 0.00 4.30
1470 1513 2.846827 TCCCTCCTTCATCCTTTTCTCC 59.153 50.000 0.00 0.00 0.00 3.71
1471 1514 4.522114 CTTCCCTCCTTCATCCTTTTCTC 58.478 47.826 0.00 0.00 0.00 2.87
1472 1515 3.268072 CCTTCCCTCCTTCATCCTTTTCT 59.732 47.826 0.00 0.00 0.00 2.52
1473 1516 3.625853 CCTTCCCTCCTTCATCCTTTTC 58.374 50.000 0.00 0.00 0.00 2.29
1474 1517 2.291865 GCCTTCCCTCCTTCATCCTTTT 60.292 50.000 0.00 0.00 0.00 2.27
1475 1518 1.286257 GCCTTCCCTCCTTCATCCTTT 59.714 52.381 0.00 0.00 0.00 3.11
1476 1519 0.922626 GCCTTCCCTCCTTCATCCTT 59.077 55.000 0.00 0.00 0.00 3.36
1477 1520 0.990818 GGCCTTCCCTCCTTCATCCT 60.991 60.000 0.00 0.00 0.00 3.24
1478 1521 0.990818 AGGCCTTCCCTCCTTCATCC 60.991 60.000 0.00 0.00 41.21 3.51
1479 1522 0.922626 AAGGCCTTCCCTCCTTCATC 59.077 55.000 13.78 0.00 45.62 2.92
1480 1523 2.286935 TAAGGCCTTCCCTCCTTCAT 57.713 50.000 24.49 0.00 45.62 2.57
1481 1524 2.127708 GATAAGGCCTTCCCTCCTTCA 58.872 52.381 24.49 0.18 45.62 3.02
1482 1525 2.105649 CAGATAAGGCCTTCCCTCCTTC 59.894 54.545 24.49 8.68 45.62 3.46
1483 1526 2.131023 CAGATAAGGCCTTCCCTCCTT 58.869 52.381 24.49 0.00 45.62 3.36
1484 1527 1.813102 CAGATAAGGCCTTCCCTCCT 58.187 55.000 24.49 10.05 45.62 3.69
1485 1528 0.109532 GCAGATAAGGCCTTCCCTCC 59.890 60.000 24.49 6.76 45.62 4.30
1486 1529 0.839946 TGCAGATAAGGCCTTCCCTC 59.160 55.000 24.49 17.06 45.62 4.30
1488 1531 2.143876 TTTGCAGATAAGGCCTTCCC 57.856 50.000 24.49 15.04 0.00 3.97
1489 1532 3.026694 ACATTTGCAGATAAGGCCTTCC 58.973 45.455 24.49 15.44 0.00 3.46
1490 1533 3.181483 CCACATTTGCAGATAAGGCCTTC 60.181 47.826 24.49 9.18 0.00 3.46
1491 1534 2.762327 CCACATTTGCAGATAAGGCCTT 59.238 45.455 24.18 24.18 0.00 4.35
1492 1535 2.025037 TCCACATTTGCAGATAAGGCCT 60.025 45.455 0.00 0.00 0.00 5.19
1493 1536 2.360165 CTCCACATTTGCAGATAAGGCC 59.640 50.000 0.00 0.00 0.00 5.19
1494 1537 3.282021 TCTCCACATTTGCAGATAAGGC 58.718 45.455 0.00 0.00 0.00 4.35
1495 1538 3.881688 CCTCTCCACATTTGCAGATAAGG 59.118 47.826 0.00 0.00 0.00 2.69
1496 1539 4.774124 TCCTCTCCACATTTGCAGATAAG 58.226 43.478 0.00 0.00 0.00 1.73
1497 1540 4.225942 ACTCCTCTCCACATTTGCAGATAA 59.774 41.667 0.00 0.00 0.00 1.75
1498 1541 3.776969 ACTCCTCTCCACATTTGCAGATA 59.223 43.478 0.00 0.00 0.00 1.98
1499 1542 2.575279 ACTCCTCTCCACATTTGCAGAT 59.425 45.455 0.00 0.00 0.00 2.90
1500 1543 1.980765 ACTCCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
1501 1544 2.082231 CACTCCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
1502 1545 1.883638 GCACTCCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
1503 1546 0.807496 GCACTCCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
1504 1547 1.081892 CGCACTCCTCTCCACATTTG 58.918 55.000 0.00 0.00 0.00 2.32
1505 1548 0.036010 CCGCACTCCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32
1506 1549 1.599047 CCGCACTCCTCTCCACATT 59.401 57.895 0.00 0.00 0.00 2.71
1507 1550 2.362369 CCCGCACTCCTCTCCACAT 61.362 63.158 0.00 0.00 0.00 3.21
1508 1551 2.435120 TACCCGCACTCCTCTCCACA 62.435 60.000 0.00 0.00 0.00 4.17
1509 1552 1.255667 TTACCCGCACTCCTCTCCAC 61.256 60.000 0.00 0.00 0.00 4.02
1510 1553 0.543410 TTTACCCGCACTCCTCTCCA 60.543 55.000 0.00 0.00 0.00 3.86
1511 1554 0.831307 ATTTACCCGCACTCCTCTCC 59.169 55.000 0.00 0.00 0.00 3.71
1512 1555 2.280628 CAATTTACCCGCACTCCTCTC 58.719 52.381 0.00 0.00 0.00 3.20
1513 1556 1.628846 ACAATTTACCCGCACTCCTCT 59.371 47.619 0.00 0.00 0.00 3.69
1514 1557 2.007608 GACAATTTACCCGCACTCCTC 58.992 52.381 0.00 0.00 0.00 3.71
1515 1558 1.349688 TGACAATTTACCCGCACTCCT 59.650 47.619 0.00 0.00 0.00 3.69
1516 1559 1.816074 TGACAATTTACCCGCACTCC 58.184 50.000 0.00 0.00 0.00 3.85
1517 1560 4.189231 ACTATGACAATTTACCCGCACTC 58.811 43.478 0.00 0.00 0.00 3.51
1518 1561 4.216411 ACTATGACAATTTACCCGCACT 57.784 40.909 0.00 0.00 0.00 4.40
1519 1562 4.957759 AACTATGACAATTTACCCGCAC 57.042 40.909 0.00 0.00 0.00 5.34
1520 1563 5.708230 AGAAAACTATGACAATTTACCCGCA 59.292 36.000 0.00 0.00 0.00 5.69
1521 1564 6.190954 AGAAAACTATGACAATTTACCCGC 57.809 37.500 0.00 0.00 0.00 6.13
1522 1565 7.120726 AGGAAGAAAACTATGACAATTTACCCG 59.879 37.037 0.00 0.00 0.00 5.28
1523 1566 8.349568 AGGAAGAAAACTATGACAATTTACCC 57.650 34.615 0.00 0.00 0.00 3.69
1527 1570 8.893727 CGGATAGGAAGAAAACTATGACAATTT 58.106 33.333 0.00 0.00 30.43 1.82
1528 1571 8.047310 ACGGATAGGAAGAAAACTATGACAATT 58.953 33.333 0.00 0.00 30.43 2.32
1529 1572 7.565680 ACGGATAGGAAGAAAACTATGACAAT 58.434 34.615 0.00 0.00 30.43 2.71
1530 1573 6.942976 ACGGATAGGAAGAAAACTATGACAA 58.057 36.000 0.00 0.00 30.43 3.18
1531 1574 6.540438 ACGGATAGGAAGAAAACTATGACA 57.460 37.500 0.00 0.00 30.43 3.58
1532 1575 8.411683 TCTAACGGATAGGAAGAAAACTATGAC 58.588 37.037 0.00 0.00 30.43 3.06
1533 1576 8.529424 TCTAACGGATAGGAAGAAAACTATGA 57.471 34.615 0.00 0.00 30.43 2.15
1541 1584 9.327628 CGATCTATATCTAACGGATAGGAAGAA 57.672 37.037 0.00 0.00 39.89 2.52
1542 1585 7.932491 CCGATCTATATCTAACGGATAGGAAGA 59.068 40.741 0.00 0.00 42.40 2.87
1543 1586 7.932491 TCCGATCTATATCTAACGGATAGGAAG 59.068 40.741 0.00 0.00 43.30 3.46
1544 1587 7.799081 TCCGATCTATATCTAACGGATAGGAA 58.201 38.462 0.00 0.00 43.30 3.36
1545 1588 7.370905 TCCGATCTATATCTAACGGATAGGA 57.629 40.000 0.00 0.00 43.30 2.94
1551 1594 4.533225 CCGTCCGATCTATATCTAACGG 57.467 50.000 13.15 13.15 44.34 4.44
1552 1595 3.242673 GGCCGTCCGATCTATATCTAACG 60.243 52.174 0.00 5.63 37.40 3.18
1553 1596 3.946558 AGGCCGTCCGATCTATATCTAAC 59.053 47.826 0.00 0.00 37.47 2.34
1554 1597 4.232188 AGGCCGTCCGATCTATATCTAA 57.768 45.455 0.00 0.00 37.47 2.10
1555 1598 3.928005 AGGCCGTCCGATCTATATCTA 57.072 47.619 0.00 0.00 37.47 1.98
1556 1599 2.810870 AGGCCGTCCGATCTATATCT 57.189 50.000 0.00 0.00 37.47 1.98
1557 1600 6.613233 CAATATAGGCCGTCCGATCTATATC 58.387 44.000 15.29 0.00 35.53 1.63
1558 1601 5.047943 GCAATATAGGCCGTCCGATCTATAT 60.048 44.000 0.00 11.98 37.13 0.86
1559 1602 4.277672 GCAATATAGGCCGTCCGATCTATA 59.722 45.833 0.00 9.58 37.47 1.31
1560 1603 3.068307 GCAATATAGGCCGTCCGATCTAT 59.932 47.826 0.00 0.00 37.47 1.98
1561 1604 2.426024 GCAATATAGGCCGTCCGATCTA 59.574 50.000 0.00 0.00 37.47 1.98
1562 1605 1.204941 GCAATATAGGCCGTCCGATCT 59.795 52.381 0.00 0.00 37.47 2.75
1563 1606 1.067142 TGCAATATAGGCCGTCCGATC 60.067 52.381 0.00 0.00 37.47 3.69
1564 1607 0.973632 TGCAATATAGGCCGTCCGAT 59.026 50.000 0.00 0.00 37.47 4.18
1565 1608 0.317160 CTGCAATATAGGCCGTCCGA 59.683 55.000 0.00 0.00 37.47 4.55
1566 1609 0.670546 CCTGCAATATAGGCCGTCCG 60.671 60.000 0.00 0.00 37.47 4.79
1567 1610 0.685097 TCCTGCAATATAGGCCGTCC 59.315 55.000 0.00 0.00 35.23 4.79
1568 1611 2.350522 CATCCTGCAATATAGGCCGTC 58.649 52.381 0.00 0.00 35.23 4.79
1569 1612 1.003580 CCATCCTGCAATATAGGCCGT 59.996 52.381 0.00 0.00 35.23 5.68
1570 1613 1.742761 CCATCCTGCAATATAGGCCG 58.257 55.000 0.00 0.00 35.23 6.13
1571 1614 1.272092 TGCCATCCTGCAATATAGGCC 60.272 52.381 12.50 0.00 38.56 5.19
1572 1615 2.089980 CTGCCATCCTGCAATATAGGC 58.910 52.381 9.23 9.23 41.51 3.93
1573 1616 3.244665 TGACTGCCATCCTGCAATATAGG 60.245 47.826 0.00 0.00 41.51 2.57
1574 1617 3.750130 GTGACTGCCATCCTGCAATATAG 59.250 47.826 0.00 0.00 41.51 1.31
1575 1618 3.136260 TGTGACTGCCATCCTGCAATATA 59.864 43.478 0.00 0.00 41.51 0.86
1576 1619 2.092267 TGTGACTGCCATCCTGCAATAT 60.092 45.455 0.00 0.00 41.51 1.28
1577 1620 1.281577 TGTGACTGCCATCCTGCAATA 59.718 47.619 0.00 0.00 41.51 1.90
1578 1621 0.038599 TGTGACTGCCATCCTGCAAT 59.961 50.000 0.00 0.00 41.51 3.56
1579 1622 0.890542 GTGTGACTGCCATCCTGCAA 60.891 55.000 0.00 0.00 41.51 4.08
1580 1623 1.302752 GTGTGACTGCCATCCTGCA 60.303 57.895 0.00 0.00 39.37 4.41
1581 1624 2.042831 GGTGTGACTGCCATCCTGC 61.043 63.158 0.00 0.00 0.00 4.85
1582 1625 0.034767 ATGGTGTGACTGCCATCCTG 60.035 55.000 6.46 0.00 41.24 3.86
1583 1626 2.391226 ATGGTGTGACTGCCATCCT 58.609 52.632 6.46 0.00 41.24 3.24
1587 1630 0.691904 TGATGATGGTGTGACTGCCA 59.308 50.000 2.36 2.36 39.33 4.92
1588 1631 1.089920 GTGATGATGGTGTGACTGCC 58.910 55.000 0.00 0.00 0.00 4.85
1589 1632 1.089920 GGTGATGATGGTGTGACTGC 58.910 55.000 0.00 0.00 0.00 4.40
1590 1633 2.477845 TGGTGATGATGGTGTGACTG 57.522 50.000 0.00 0.00 0.00 3.51
1591 1634 2.373169 AGTTGGTGATGATGGTGTGACT 59.627 45.455 0.00 0.00 0.00 3.41
1592 1635 2.744202 GAGTTGGTGATGATGGTGTGAC 59.256 50.000 0.00 0.00 0.00 3.67
1593 1636 2.639347 AGAGTTGGTGATGATGGTGTGA 59.361 45.455 0.00 0.00 0.00 3.58
1594 1637 2.745821 CAGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
1595 1638 2.877300 GCAGAGTTGGTGATGATGGTGT 60.877 50.000 0.00 0.00 0.00 4.16
1596 1639 1.741706 GCAGAGTTGGTGATGATGGTG 59.258 52.381 0.00 0.00 0.00 4.17
1597 1640 1.632409 AGCAGAGTTGGTGATGATGGT 59.368 47.619 0.00 0.00 32.86 3.55
1598 1641 2.414994 AGCAGAGTTGGTGATGATGG 57.585 50.000 0.00 0.00 32.86 3.51
1599 1642 4.778534 AAAAGCAGAGTTGGTGATGATG 57.221 40.909 0.00 0.00 34.72 3.07
1600 1643 8.579850 TTATAAAAAGCAGAGTTGGTGATGAT 57.420 30.769 0.00 0.00 34.72 2.45
1601 1644 7.882791 TCTTATAAAAAGCAGAGTTGGTGATGA 59.117 33.333 0.00 0.00 34.72 2.92
1602 1645 8.044060 TCTTATAAAAAGCAGAGTTGGTGATG 57.956 34.615 0.00 0.00 34.72 3.07
1603 1646 7.885399 ACTCTTATAAAAAGCAGAGTTGGTGAT 59.115 33.333 0.00 0.00 42.79 3.06
1604 1647 7.224297 ACTCTTATAAAAAGCAGAGTTGGTGA 58.776 34.615 0.00 0.00 42.79 4.02
1605 1648 7.440523 ACTCTTATAAAAAGCAGAGTTGGTG 57.559 36.000 0.00 0.00 42.79 4.17
1606 1649 8.594550 TCTACTCTTATAAAAAGCAGAGTTGGT 58.405 33.333 7.61 0.00 42.79 3.67
1607 1650 9.606631 ATCTACTCTTATAAAAAGCAGAGTTGG 57.393 33.333 7.61 3.42 42.79 3.77
1625 1668 6.136857 TGCCATACAAGAGGTAATCTACTCT 58.863 40.000 0.00 0.00 45.51 3.24
1626 1669 6.406692 TGCCATACAAGAGGTAATCTACTC 57.593 41.667 0.00 0.00 37.23 2.59
1627 1670 6.808321 TTGCCATACAAGAGGTAATCTACT 57.192 37.500 0.00 0.00 37.23 2.57
1628 1671 8.345565 CAAATTGCCATACAAGAGGTAATCTAC 58.654 37.037 0.00 0.00 42.87 2.59
1629 1672 7.013274 GCAAATTGCCATACAAGAGGTAATCTA 59.987 37.037 6.72 0.00 42.87 1.98
1630 1673 6.183360 GCAAATTGCCATACAAGAGGTAATCT 60.183 38.462 6.72 0.00 42.87 2.40
1631 1674 5.979517 GCAAATTGCCATACAAGAGGTAATC 59.020 40.000 6.72 0.00 42.87 1.75
1632 1675 5.421693 TGCAAATTGCCATACAAGAGGTAAT 59.578 36.000 15.98 0.00 44.23 1.89
1633 1676 4.769488 TGCAAATTGCCATACAAGAGGTAA 59.231 37.500 15.98 0.00 44.23 2.85
1634 1677 4.157656 GTGCAAATTGCCATACAAGAGGTA 59.842 41.667 15.98 0.00 44.23 3.08
1635 1678 3.056607 GTGCAAATTGCCATACAAGAGGT 60.057 43.478 15.98 0.00 44.23 3.85
1636 1679 3.056678 TGTGCAAATTGCCATACAAGAGG 60.057 43.478 15.98 0.00 44.23 3.69
1637 1680 4.177165 TGTGCAAATTGCCATACAAGAG 57.823 40.909 15.98 0.00 44.23 2.85
1638 1681 4.496360 CATGTGCAAATTGCCATACAAGA 58.504 39.130 15.98 0.00 44.23 3.02
1639 1682 3.062909 GCATGTGCAAATTGCCATACAAG 59.937 43.478 15.98 11.01 44.23 3.16
1640 1683 3.001414 GCATGTGCAAATTGCCATACAA 58.999 40.909 15.98 0.00 44.23 2.41
1641 1684 2.234168 AGCATGTGCAAATTGCCATACA 59.766 40.909 15.98 13.29 44.23 2.29
1642 1685 2.896168 AGCATGTGCAAATTGCCATAC 58.104 42.857 15.98 12.29 44.23 2.39
1643 1686 3.613494 AAGCATGTGCAAATTGCCATA 57.387 38.095 15.98 1.95 44.23 2.74
1644 1687 2.483014 AAGCATGTGCAAATTGCCAT 57.517 40.000 15.98 14.54 44.23 4.40
1645 1688 2.257691 AAAGCATGTGCAAATTGCCA 57.742 40.000 15.98 12.90 44.23 4.92
1646 1689 6.037391 ACATTATAAAGCATGTGCAAATTGCC 59.963 34.615 15.98 7.45 44.23 4.52
1647 1690 7.007313 ACATTATAAAGCATGTGCAAATTGC 57.993 32.000 11.58 11.58 45.16 3.56
1652 1695 9.743057 GGTAATAACATTATAAAGCATGTGCAA 57.257 29.630 7.83 0.00 45.16 4.08
1653 1696 9.130661 AGGTAATAACATTATAAAGCATGTGCA 57.869 29.630 7.83 0.00 45.16 4.57
1654 1697 9.612620 GAGGTAATAACATTATAAAGCATGTGC 57.387 33.333 0.00 0.00 42.49 4.57
1670 1713 9.503427 GCAAATTGTCATACAAGAGGTAATAAC 57.497 33.333 0.00 0.00 41.94 1.89
1671 1714 9.237187 TGCAAATTGTCATACAAGAGGTAATAA 57.763 29.630 0.00 0.00 41.94 1.40
1672 1715 8.673711 GTGCAAATTGTCATACAAGAGGTAATA 58.326 33.333 0.00 0.00 41.94 0.98
1673 1716 7.176515 TGTGCAAATTGTCATACAAGAGGTAAT 59.823 33.333 0.00 0.00 41.94 1.89
1674 1717 6.488344 TGTGCAAATTGTCATACAAGAGGTAA 59.512 34.615 0.00 0.00 41.94 2.85
1675 1718 6.000840 TGTGCAAATTGTCATACAAGAGGTA 58.999 36.000 0.00 0.00 41.94 3.08
1676 1719 4.826733 TGTGCAAATTGTCATACAAGAGGT 59.173 37.500 0.00 0.00 41.94 3.85
1677 1720 5.375417 TGTGCAAATTGTCATACAAGAGG 57.625 39.130 0.00 0.00 41.94 3.69
1678 1721 5.287752 GCATGTGCAAATTGTCATACAAGAG 59.712 40.000 0.00 0.00 40.30 2.85
1679 1722 5.047872 AGCATGTGCAAATTGTCATACAAGA 60.048 36.000 7.83 0.00 41.90 3.02
1680 1723 5.165676 AGCATGTGCAAATTGTCATACAAG 58.834 37.500 7.83 0.00 41.90 3.16
1681 1724 5.136816 AGCATGTGCAAATTGTCATACAA 57.863 34.783 7.83 0.00 42.43 2.41
1682 1725 4.787260 AGCATGTGCAAATTGTCATACA 57.213 36.364 7.83 0.00 45.16 2.29
1683 1726 7.760131 ATAAAGCATGTGCAAATTGTCATAC 57.240 32.000 7.83 0.00 45.16 2.39
1685 1728 8.822855 CATTATAAAGCATGTGCAAATTGTCAT 58.177 29.630 7.83 0.00 45.16 3.06
1713 1756 3.152341 AGCAGCATCAACTTAGCTTTGT 58.848 40.909 0.00 0.00 36.26 2.83
1772 1815 6.680810 TCTGGAGCTGTAAAATGTTGAAATG 58.319 36.000 0.00 0.00 0.00 2.32
1786 1829 1.771255 ACCTTTCACTTCTGGAGCTGT 59.229 47.619 0.00 0.00 0.00 4.40
1857 1900 3.868077 CGACTGCTTTCTTTATCAGAGGG 59.132 47.826 0.00 0.00 31.12 4.30
1865 1908 3.323979 AGGACCTTCGACTGCTTTCTTTA 59.676 43.478 0.00 0.00 0.00 1.85
1884 1927 3.360296 TGCAAATGGTGATGCAGGA 57.640 47.368 0.00 0.00 46.87 3.86
1902 1945 2.099756 GCAGCCGCCTCTTAAAATCAAT 59.900 45.455 0.00 0.00 0.00 2.57
1997 2040 2.702592 ACTTGAAACAAGGACACCGA 57.297 45.000 14.51 0.00 0.00 4.69
2031 2074 2.040278 TGATGTCAGGACCAAAAGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
2220 2263 0.165295 GAAAAAGGTCGTAGGTGCGC 59.835 55.000 0.00 0.00 0.00 6.09
2228 2271 3.387050 AGGTGTAGTCTGAAAAAGGTCGT 59.613 43.478 0.00 0.00 0.00 4.34
2341 2388 9.817365 CGCACAATAGATAATATTGGAGAAAAG 57.183 33.333 11.21 0.00 38.77 2.27
2366 2413 5.766702 AAATGCTGTTGAAAATATGTGCG 57.233 34.783 0.00 0.00 0.00 5.34
2384 2431 8.504005 CCACTGTTAACACTTCCTAGTTAAATG 58.496 37.037 3.59 0.00 40.62 2.32
2480 2527 6.182627 TGAGCATCACTTTGACCTGAATATT 58.817 36.000 0.00 0.00 42.56 1.28
2592 2639 3.351740 TCTCACAAAGAAACAAGTGGCA 58.648 40.909 0.00 0.00 33.01 4.92
2947 2997 7.725397 TGCAGCAAGTATATTCTAATTCCCAAT 59.275 33.333 0.00 0.00 0.00 3.16
3051 3101 7.461182 TTTGTATCTCAAACATACAAAGGGG 57.539 36.000 12.00 0.00 45.43 4.79
3096 3148 6.569610 GCGACCAGGAAACAAATGAAATCTAA 60.570 38.462 0.00 0.00 0.00 2.10
3234 3289 6.299805 AGATGAAACAGCCAAGTATCAGTA 57.700 37.500 0.00 0.00 0.00 2.74
3355 3410 2.359355 GGGTAGACTCTGATGGAGGGAA 60.359 54.545 0.00 0.00 45.83 3.97
3530 3585 0.908910 ACATCTGCATGGGTTACGGA 59.091 50.000 0.00 0.00 33.82 4.69
3551 3606 3.265791 CTGATAGCAGGTGAGTTGGAAC 58.734 50.000 0.00 0.00 38.51 3.62
3629 3684 2.361104 GCCCGGATGCAAGGTTCA 60.361 61.111 0.73 0.00 0.00 3.18
3631 3686 2.676471 GTGCCCGGATGCAAGGTT 60.676 61.111 0.73 0.00 44.11 3.50
3694 3749 0.984230 GGGGAGACTTGTGGTGATGA 59.016 55.000 0.00 0.00 0.00 2.92
3794 3849 2.034687 GCTGCCCTGAAGAGCCAA 59.965 61.111 0.00 0.00 0.00 4.52
3837 3892 1.403687 ATAAGCTCGGCCCTGACTCC 61.404 60.000 0.00 0.00 0.00 3.85
3939 3994 2.915659 TGACGGAGCGACTGGGTT 60.916 61.111 0.00 0.00 0.00 4.11
4000 4055 4.363990 CTGGGCTGACGTCGCAGT 62.364 66.667 25.67 0.00 38.98 4.40
4060 4115 2.559668 TGGTAACAGGTCTAACTGGACG 59.440 50.000 0.00 0.00 46.17 4.79
4097 4152 4.830765 TCACTATGGTGCGGCCGC 62.831 66.667 42.35 42.35 42.72 6.53
4098 4153 2.125310 TTCACTATGGTGCGGCCG 60.125 61.111 24.05 24.05 42.72 6.13
4100 4155 2.813179 CGCTTCACTATGGTGCGGC 61.813 63.158 3.97 9.77 42.72 6.53
4101 4156 3.398920 CGCTTCACTATGGTGCGG 58.601 61.111 3.97 0.91 42.72 5.69
4102 4157 0.530650 ATCCGCTTCACTATGGTGCG 60.531 55.000 3.97 4.88 42.72 5.34
4103 4158 1.668419 AATCCGCTTCACTATGGTGC 58.332 50.000 3.97 0.00 42.72 5.01
4104 4159 3.270027 TCAAATCCGCTTCACTATGGTG 58.730 45.455 2.16 2.16 44.23 4.17
4105 4160 3.627395 TCAAATCCGCTTCACTATGGT 57.373 42.857 0.00 0.00 0.00 3.55
4106 4161 4.576053 TCATTCAAATCCGCTTCACTATGG 59.424 41.667 0.00 0.00 0.00 2.74
4133 4203 1.077858 CTTCCAGGCAGCTCCCTTC 60.078 63.158 0.00 0.00 31.24 3.46
4151 4221 3.952967 AGGTCACCGGTTCTAGTATCTTC 59.047 47.826 2.97 0.00 0.00 2.87
4154 4224 4.732672 AAAGGTCACCGGTTCTAGTATC 57.267 45.455 2.97 0.00 0.00 2.24
4191 4314 1.271597 CCAGTCTTCCAAGGTTCCCAG 60.272 57.143 0.00 0.00 0.00 4.45
4192 4315 0.771127 CCAGTCTTCCAAGGTTCCCA 59.229 55.000 0.00 0.00 0.00 4.37
4193 4316 1.064825 TCCAGTCTTCCAAGGTTCCC 58.935 55.000 0.00 0.00 0.00 3.97
4194 4317 2.951229 TTCCAGTCTTCCAAGGTTCC 57.049 50.000 0.00 0.00 0.00 3.62
4195 4318 4.216472 GTCATTTCCAGTCTTCCAAGGTTC 59.784 45.833 0.00 0.00 0.00 3.62
4196 4319 4.141158 AGTCATTTCCAGTCTTCCAAGGTT 60.141 41.667 0.00 0.00 0.00 3.50
4197 4320 3.395941 AGTCATTTCCAGTCTTCCAAGGT 59.604 43.478 0.00 0.00 0.00 3.50
4198 4321 4.006319 GAGTCATTTCCAGTCTTCCAAGG 58.994 47.826 0.00 0.00 0.00 3.61
4199 4322 4.694509 CAGAGTCATTTCCAGTCTTCCAAG 59.305 45.833 0.00 0.00 0.00 3.61
4200 4323 4.645535 CAGAGTCATTTCCAGTCTTCCAA 58.354 43.478 0.00 0.00 0.00 3.53
4201 4324 3.557898 GCAGAGTCATTTCCAGTCTTCCA 60.558 47.826 0.00 0.00 0.00 3.53
4202 4325 3.006247 GCAGAGTCATTTCCAGTCTTCC 58.994 50.000 0.00 0.00 0.00 3.46
4203 4326 3.683822 CAGCAGAGTCATTTCCAGTCTTC 59.316 47.826 0.00 0.00 0.00 2.87
4204 4327 3.326006 TCAGCAGAGTCATTTCCAGTCTT 59.674 43.478 0.00 0.00 0.00 3.01
4205 4328 2.902486 TCAGCAGAGTCATTTCCAGTCT 59.098 45.455 0.00 0.00 0.00 3.24
4206 4329 2.999355 GTCAGCAGAGTCATTTCCAGTC 59.001 50.000 0.00 0.00 0.00 3.51
4207 4330 2.289945 GGTCAGCAGAGTCATTTCCAGT 60.290 50.000 0.00 0.00 0.00 4.00
4208 4331 2.289882 TGGTCAGCAGAGTCATTTCCAG 60.290 50.000 0.00 0.00 0.00 3.86
4209 4332 1.699083 TGGTCAGCAGAGTCATTTCCA 59.301 47.619 0.00 0.00 0.00 3.53
4210 4333 2.079925 GTGGTCAGCAGAGTCATTTCC 58.920 52.381 0.00 0.00 0.00 3.13
4211 4334 2.481952 GTGTGGTCAGCAGAGTCATTTC 59.518 50.000 0.00 0.00 0.00 2.17
4212 4335 2.105477 AGTGTGGTCAGCAGAGTCATTT 59.895 45.455 0.00 0.00 0.00 2.32
4213 4336 1.696336 AGTGTGGTCAGCAGAGTCATT 59.304 47.619 0.00 0.00 0.00 2.57
4214 4337 1.001746 CAGTGTGGTCAGCAGAGTCAT 59.998 52.381 0.00 0.00 0.00 3.06
4215 4338 0.390492 CAGTGTGGTCAGCAGAGTCA 59.610 55.000 0.00 0.00 0.00 3.41
4216 4339 0.676184 TCAGTGTGGTCAGCAGAGTC 59.324 55.000 0.00 0.00 0.00 3.36
4217 4340 0.678395 CTCAGTGTGGTCAGCAGAGT 59.322 55.000 0.00 0.00 0.00 3.24
4218 4341 0.678395 ACTCAGTGTGGTCAGCAGAG 59.322 55.000 0.00 0.00 0.00 3.35
4219 4342 1.123077 AACTCAGTGTGGTCAGCAGA 58.877 50.000 0.00 0.00 0.00 4.26
4220 4343 1.600957 CAAACTCAGTGTGGTCAGCAG 59.399 52.381 0.00 0.00 0.00 4.24
4221 4344 1.667236 CAAACTCAGTGTGGTCAGCA 58.333 50.000 0.00 0.00 0.00 4.41
4222 4345 0.308993 GCAAACTCAGTGTGGTCAGC 59.691 55.000 0.00 0.00 0.00 4.26
4223 4346 1.667236 TGCAAACTCAGTGTGGTCAG 58.333 50.000 0.00 0.00 0.00 3.51
4224 4347 2.016318 CTTGCAAACTCAGTGTGGTCA 58.984 47.619 0.00 0.00 0.00 4.02
4225 4348 1.334869 CCTTGCAAACTCAGTGTGGTC 59.665 52.381 0.00 0.00 0.00 4.02
4226 4349 1.064758 TCCTTGCAAACTCAGTGTGGT 60.065 47.619 0.00 0.00 0.00 4.16
4227 4350 1.679139 TCCTTGCAAACTCAGTGTGG 58.321 50.000 0.00 0.00 0.00 4.17
4228 4351 3.067180 ACAATCCTTGCAAACTCAGTGTG 59.933 43.478 0.00 0.00 0.00 3.82
4229 4352 3.290710 ACAATCCTTGCAAACTCAGTGT 58.709 40.909 0.00 0.00 0.00 3.55
4230 4353 3.567164 AGACAATCCTTGCAAACTCAGTG 59.433 43.478 0.00 0.00 0.00 3.66
4231 4354 3.825328 AGACAATCCTTGCAAACTCAGT 58.175 40.909 0.00 0.00 0.00 3.41
4232 4355 4.276678 TCAAGACAATCCTTGCAAACTCAG 59.723 41.667 0.00 0.00 42.34 3.35
4233 4356 4.206375 TCAAGACAATCCTTGCAAACTCA 58.794 39.130 0.00 0.00 42.34 3.41
4234 4357 4.320788 CCTCAAGACAATCCTTGCAAACTC 60.321 45.833 0.00 0.00 42.34 3.01
4235 4358 3.571401 CCTCAAGACAATCCTTGCAAACT 59.429 43.478 0.00 0.00 42.34 2.66
4236 4359 3.858503 GCCTCAAGACAATCCTTGCAAAC 60.859 47.826 0.00 0.00 42.34 2.93
4237 4360 2.297033 GCCTCAAGACAATCCTTGCAAA 59.703 45.455 0.00 0.00 42.34 3.68
4238 4361 1.888512 GCCTCAAGACAATCCTTGCAA 59.111 47.619 0.00 0.00 42.34 4.08
4239 4362 1.538047 GCCTCAAGACAATCCTTGCA 58.462 50.000 0.00 0.00 42.34 4.08
4240 4363 0.449388 CGCCTCAAGACAATCCTTGC 59.551 55.000 0.00 0.00 42.34 4.01
4394 4520 4.747108 ACAGAGTGAGAACGAACAAGATTG 59.253 41.667 0.00 0.00 0.00 2.67
4481 4607 4.039124 AGCCAGACCAAAAACCAATAACAG 59.961 41.667 0.00 0.00 0.00 3.16
4546 4672 5.547465 GGGGGAAAACTCCAATACAAAAAG 58.453 41.667 0.00 0.00 0.00 2.27
4636 4770 4.619760 TCTCTCGTTGTATTTTGTACTGCG 59.380 41.667 0.00 0.00 0.00 5.18
4704 4840 8.024145 TGCCCCAAACTCTTTTTCTATTTTAA 57.976 30.769 0.00 0.00 0.00 1.52
4721 4857 0.827507 GAAGCCTCAGTTGCCCCAAA 60.828 55.000 0.00 0.00 0.00 3.28
4744 4880 1.112113 TGGAAGTGATCTCGTAGGCC 58.888 55.000 0.00 0.00 0.00 5.19
4874 5014 5.476945 AGACATCTTTATTCCCAACACCAAC 59.523 40.000 0.00 0.00 0.00 3.77
4882 5022 4.526970 GCCAGAAGACATCTTTATTCCCA 58.473 43.478 0.00 0.00 35.73 4.37
4889 5029 4.038271 TCAATGGCCAGAAGACATCTTT 57.962 40.909 13.05 0.00 35.73 2.52
4902 5042 1.384222 GGACCCGTTCATCAATGGCC 61.384 60.000 0.00 0.00 37.36 5.36
4928 5068 5.388654 CCATATTGGCTACCTCCAGAAATT 58.611 41.667 0.00 0.00 37.44 1.82
4959 5099 2.030457 CGTCGAGTCAAAGTGCAAAGTT 59.970 45.455 0.00 0.00 0.00 2.66
4973 5113 0.667487 CATTGTGCAGACCGTCGAGT 60.667 55.000 0.00 0.00 0.00 4.18
5000 5140 2.232452 AGCCTCGTATATGGAGTGCATC 59.768 50.000 0.00 0.00 33.15 3.91
5002 5142 1.704641 AGCCTCGTATATGGAGTGCA 58.295 50.000 15.00 0.00 33.15 4.57
5004 5144 5.843673 ATGATAGCCTCGTATATGGAGTG 57.156 43.478 5.28 0.00 0.00 3.51
5005 5145 7.041030 CGATAATGATAGCCTCGTATATGGAGT 60.041 40.741 5.28 0.00 0.00 3.85
5007 5147 6.294010 GCGATAATGATAGCCTCGTATATGGA 60.294 42.308 0.00 0.00 0.00 3.41
5014 5154 1.810755 TCGCGATAATGATAGCCTCGT 59.189 47.619 3.71 0.00 30.42 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.