Multiple sequence alignment - TraesCS7B01G226100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G226100 chr7B 100.000 2858 0 0 1 2858 426787558 426790415 0.000000e+00 5278.0
1 TraesCS7B01G226100 chr7B 91.803 305 25 0 1249 1553 426833518 426833822 2.630000e-115 425.0
2 TraesCS7B01G226100 chr7A 92.029 1932 95 28 680 2581 473673981 473675883 0.000000e+00 2660.0
3 TraesCS7B01G226100 chr7A 92.131 305 24 0 1249 1553 473807678 473807982 5.660000e-117 431.0
4 TraesCS7B01G226100 chr7A 94.783 230 10 2 2630 2858 473675898 473676126 9.740000e-95 357.0
5 TraesCS7B01G226100 chr7A 92.340 235 18 0 203 437 473669931 473670165 4.560000e-88 335.0
6 TraesCS7B01G226100 chr7A 89.370 254 22 3 432 681 473670247 473670499 5.940000e-82 315.0
7 TraesCS7B01G226100 chr7D 90.885 1130 48 22 874 1977 412234622 412235722 0.000000e+00 1465.0
8 TraesCS7B01G226100 chr7D 91.511 483 26 4 204 681 412229155 412229627 0.000000e+00 651.0
9 TraesCS7B01G226100 chr7D 92.131 305 24 0 1249 1553 412394869 412395173 5.660000e-117 431.0
10 TraesCS7B01G226100 chr7D 91.617 167 7 2 718 877 412232646 412232812 1.030000e-54 224.0
11 TraesCS7B01G226100 chr7D 93.333 135 8 1 68 202 18848912 18848779 6.250000e-47 198.0
12 TraesCS7B01G226100 chr3D 87.879 198 22 2 6 202 23558263 23558067 6.160000e-57 231.0
13 TraesCS7B01G226100 chr1B 83.886 211 24 9 1 210 670406748 670406949 2.910000e-45 193.0
14 TraesCS7B01G226100 chr1D 82.323 198 30 3 6 202 392761613 392761420 1.760000e-37 167.0
15 TraesCS7B01G226100 chr2B 95.000 60 3 0 83 142 692783989 692784048 8.430000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G226100 chr7B 426787558 426790415 2857 False 5278.00 5278 100.000000 1 2858 1 chr7B.!!$F1 2857
1 TraesCS7B01G226100 chr7A 473669931 473676126 6195 False 916.75 2660 92.130500 203 2858 4 chr7A.!!$F2 2655
2 TraesCS7B01G226100 chr7D 412229155 412235722 6567 False 780.00 1465 91.337667 204 1977 3 chr7D.!!$F2 1773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.036306 AAAAAGACGATCGTGCCCCT 59.964 50.0 28.12 13.68 0.00 4.79 F
172 173 0.250727 TTTCTCCCCCTTGCGTTCAG 60.251 55.0 0.00 0.00 0.00 3.02 F
292 302 0.386100 CATCTACCATCTCGTCGGCG 60.386 60.0 1.15 1.15 39.92 6.46 F
1612 9614 0.611062 CGGACCCTGAGACCTGTGTA 60.611 60.0 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 9591 0.972983 CAGGTCTCAGGGTCCGTGAT 60.973 60.000 14.50 0.00 0.00 3.06 R
1597 9599 1.003233 GGGTTTACACAGGTCTCAGGG 59.997 57.143 0.00 0.00 0.00 4.45 R
1625 9627 1.132834 GTCCGTGCATGCATGAAATCA 59.867 47.619 35.91 15.32 35.09 2.57 R
2607 10652 0.111253 CCAAGTCCACCAGCTTCCTT 59.889 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.281102 ACCATACGGTCGGGCATA 57.719 55.556 2.03 0.00 44.71 3.14
35 36 2.754648 ACCATACGGTCGGGCATAT 58.245 52.632 2.03 0.00 44.71 1.78
36 37 0.320374 ACCATACGGTCGGGCATATG 59.680 55.000 0.00 0.00 44.71 1.78
37 38 0.606096 CCATACGGTCGGGCATATGA 59.394 55.000 6.97 0.00 0.00 2.15
38 39 1.001520 CCATACGGTCGGGCATATGAA 59.998 52.381 6.97 0.00 0.00 2.57
39 40 2.066262 CATACGGTCGGGCATATGAAC 58.934 52.381 6.97 0.00 0.00 3.18
40 41 1.405872 TACGGTCGGGCATATGAACT 58.594 50.000 6.97 0.00 0.00 3.01
41 42 1.405872 ACGGTCGGGCATATGAACTA 58.594 50.000 6.97 0.00 0.00 2.24
42 43 1.758280 ACGGTCGGGCATATGAACTAA 59.242 47.619 6.97 0.00 0.00 2.24
43 44 2.367567 ACGGTCGGGCATATGAACTAAT 59.632 45.455 6.97 0.00 0.00 1.73
44 45 2.993899 CGGTCGGGCATATGAACTAATC 59.006 50.000 6.97 0.00 0.00 1.75
45 46 2.993899 GGTCGGGCATATGAACTAATCG 59.006 50.000 6.97 0.00 0.00 3.34
46 47 2.993899 GTCGGGCATATGAACTAATCGG 59.006 50.000 6.97 0.00 0.00 4.18
47 48 2.028476 TCGGGCATATGAACTAATCGGG 60.028 50.000 6.97 0.00 0.00 5.14
48 49 2.289444 CGGGCATATGAACTAATCGGGT 60.289 50.000 6.97 0.00 0.00 5.28
49 50 3.335579 GGGCATATGAACTAATCGGGTC 58.664 50.000 6.97 0.00 0.00 4.46
50 51 2.993899 GGCATATGAACTAATCGGGTCG 59.006 50.000 6.97 0.00 0.00 4.79
51 52 3.554337 GGCATATGAACTAATCGGGTCGT 60.554 47.826 6.97 0.00 0.00 4.34
52 53 4.321452 GGCATATGAACTAATCGGGTCGTA 60.321 45.833 6.97 0.00 0.00 3.43
53 54 4.620184 GCATATGAACTAATCGGGTCGTAC 59.380 45.833 6.97 0.00 0.00 3.67
54 55 2.830772 TGAACTAATCGGGTCGTACG 57.169 50.000 9.53 9.53 0.00 3.67
55 56 1.401552 TGAACTAATCGGGTCGTACGG 59.598 52.381 16.52 0.00 0.00 4.02
56 57 0.740737 AACTAATCGGGTCGTACGGG 59.259 55.000 16.52 2.89 0.00 5.28
57 58 1.008079 CTAATCGGGTCGTACGGGC 60.008 63.158 16.52 8.76 0.00 6.13
58 59 2.412037 CTAATCGGGTCGTACGGGCC 62.412 65.000 16.52 17.12 0.00 5.80
64 65 4.446413 GTCGTACGGGCCCCACAG 62.446 72.222 18.66 4.11 0.00 3.66
68 69 4.326227 TACGGGCCCCACAGGACT 62.326 66.667 18.66 0.00 46.87 3.85
72 73 3.403558 GGCCCCACAGGACTCCTC 61.404 72.222 0.00 0.00 42.61 3.71
73 74 3.775654 GCCCCACAGGACTCCTCG 61.776 72.222 0.00 0.00 38.24 4.63
74 75 2.037367 CCCCACAGGACTCCTCGA 59.963 66.667 0.00 0.00 38.24 4.04
75 76 2.352032 CCCCACAGGACTCCTCGAC 61.352 68.421 0.00 0.00 38.24 4.20
76 77 1.606601 CCCACAGGACTCCTCGACA 60.607 63.158 0.00 0.00 33.47 4.35
77 78 1.599606 CCCACAGGACTCCTCGACAG 61.600 65.000 0.00 0.00 33.47 3.51
78 79 1.214062 CACAGGACTCCTCGACAGC 59.786 63.158 0.00 0.00 0.00 4.40
79 80 1.075836 ACAGGACTCCTCGACAGCT 59.924 57.895 0.00 0.00 0.00 4.24
80 81 0.328592 ACAGGACTCCTCGACAGCTA 59.671 55.000 0.00 0.00 0.00 3.32
81 82 1.064314 ACAGGACTCCTCGACAGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
82 83 2.172930 ACAGGACTCCTCGACAGCTATA 59.827 50.000 0.00 0.00 0.00 1.31
83 84 2.550606 CAGGACTCCTCGACAGCTATAC 59.449 54.545 0.00 0.00 0.00 1.47
84 85 2.172930 AGGACTCCTCGACAGCTATACA 59.827 50.000 0.00 0.00 0.00 2.29
85 86 2.291190 GGACTCCTCGACAGCTATACAC 59.709 54.545 0.00 0.00 0.00 2.90
86 87 2.943690 GACTCCTCGACAGCTATACACA 59.056 50.000 0.00 0.00 0.00 3.72
87 88 2.683867 ACTCCTCGACAGCTATACACAC 59.316 50.000 0.00 0.00 0.00 3.82
88 89 1.669265 TCCTCGACAGCTATACACACG 59.331 52.381 0.00 0.00 0.00 4.49
89 90 1.268589 CCTCGACAGCTATACACACGG 60.269 57.143 0.00 0.00 0.00 4.94
90 91 0.736636 TCGACAGCTATACACACGGG 59.263 55.000 0.00 0.00 0.00 5.28
91 92 0.870307 CGACAGCTATACACACGGGC 60.870 60.000 0.00 0.00 0.00 6.13
92 93 0.174845 GACAGCTATACACACGGGCA 59.825 55.000 0.00 0.00 0.00 5.36
93 94 0.611200 ACAGCTATACACACGGGCAA 59.389 50.000 0.00 0.00 0.00 4.52
94 95 1.002659 ACAGCTATACACACGGGCAAA 59.997 47.619 0.00 0.00 0.00 3.68
95 96 2.080693 CAGCTATACACACGGGCAAAA 58.919 47.619 0.00 0.00 0.00 2.44
96 97 2.486203 CAGCTATACACACGGGCAAAAA 59.514 45.455 0.00 0.00 0.00 1.94
111 112 2.551644 AAAAAGACGATCGTGCCCC 58.448 52.632 28.12 11.29 0.00 5.80
112 113 0.036306 AAAAAGACGATCGTGCCCCT 59.964 50.000 28.12 13.68 0.00 4.79
113 114 0.391263 AAAAGACGATCGTGCCCCTC 60.391 55.000 28.12 10.05 0.00 4.30
114 115 2.558554 AAAGACGATCGTGCCCCTCG 62.559 60.000 28.12 0.00 38.34 4.63
116 117 3.352338 GACGATCGTGCCCCTCGTT 62.352 63.158 28.12 0.00 44.89 3.85
117 118 2.125673 CGATCGTGCCCCTCGTTT 60.126 61.111 7.03 0.00 0.00 3.60
118 119 2.165301 CGATCGTGCCCCTCGTTTC 61.165 63.158 7.03 0.00 0.00 2.78
119 120 2.125673 ATCGTGCCCCTCGTTTCG 60.126 61.111 0.00 0.00 0.00 3.46
120 121 2.552585 GATCGTGCCCCTCGTTTCGA 62.553 60.000 0.00 0.00 0.00 3.71
121 122 2.162338 ATCGTGCCCCTCGTTTCGAA 62.162 55.000 0.00 0.00 34.74 3.71
122 123 2.664436 CGTGCCCCTCGTTTCGAAC 61.664 63.158 0.00 0.00 34.74 3.95
123 124 2.031465 TGCCCCTCGTTTCGAACC 59.969 61.111 0.00 0.00 34.74 3.62
124 125 3.116531 GCCCCTCGTTTCGAACCG 61.117 66.667 9.00 9.00 34.74 4.44
125 126 2.341176 CCCCTCGTTTCGAACCGT 59.659 61.111 14.89 0.00 34.74 4.83
126 127 1.301165 CCCCTCGTTTCGAACCGTT 60.301 57.895 14.89 0.00 34.74 4.44
127 128 0.881600 CCCCTCGTTTCGAACCGTTT 60.882 55.000 14.89 0.00 34.74 3.60
128 129 0.939419 CCCTCGTTTCGAACCGTTTT 59.061 50.000 14.89 0.00 34.74 2.43
129 130 1.331447 CCCTCGTTTCGAACCGTTTTT 59.669 47.619 14.89 0.00 34.74 1.94
130 131 2.368685 CCTCGTTTCGAACCGTTTTTG 58.631 47.619 14.89 2.29 34.74 2.44
131 132 2.368685 CTCGTTTCGAACCGTTTTTGG 58.631 47.619 14.89 0.00 34.74 3.28
132 133 1.736681 TCGTTTCGAACCGTTTTTGGT 59.263 42.857 14.89 0.00 46.67 3.67
142 143 2.297880 ACCGTTTTTGGTTAATCCTGGC 59.702 45.455 0.00 0.00 39.99 4.85
143 144 2.560981 CCGTTTTTGGTTAATCCTGGCT 59.439 45.455 0.00 0.00 37.07 4.75
144 145 3.574614 CGTTTTTGGTTAATCCTGGCTG 58.425 45.455 0.00 0.00 37.07 4.85
145 146 3.005367 CGTTTTTGGTTAATCCTGGCTGT 59.995 43.478 0.00 0.00 37.07 4.40
146 147 4.556233 GTTTTTGGTTAATCCTGGCTGTC 58.444 43.478 0.00 0.00 37.07 3.51
147 148 2.507407 TTGGTTAATCCTGGCTGTCC 57.493 50.000 0.00 0.00 37.07 4.02
148 149 1.668826 TGGTTAATCCTGGCTGTCCT 58.331 50.000 0.00 0.00 37.07 3.85
149 150 1.992557 TGGTTAATCCTGGCTGTCCTT 59.007 47.619 0.00 0.00 37.07 3.36
150 151 2.290896 TGGTTAATCCTGGCTGTCCTTG 60.291 50.000 0.00 0.00 37.07 3.61
151 152 2.290960 GGTTAATCCTGGCTGTCCTTGT 60.291 50.000 0.00 0.00 0.00 3.16
152 153 2.749621 GTTAATCCTGGCTGTCCTTGTG 59.250 50.000 0.00 0.00 0.00 3.33
153 154 0.773644 AATCCTGGCTGTCCTTGTGT 59.226 50.000 0.00 0.00 0.00 3.72
154 155 0.773644 ATCCTGGCTGTCCTTGTGTT 59.226 50.000 0.00 0.00 0.00 3.32
155 156 0.550914 TCCTGGCTGTCCTTGTGTTT 59.449 50.000 0.00 0.00 0.00 2.83
156 157 0.954452 CCTGGCTGTCCTTGTGTTTC 59.046 55.000 0.00 0.00 0.00 2.78
157 158 1.477558 CCTGGCTGTCCTTGTGTTTCT 60.478 52.381 0.00 0.00 0.00 2.52
158 159 1.876156 CTGGCTGTCCTTGTGTTTCTC 59.124 52.381 0.00 0.00 0.00 2.87
159 160 1.239347 GGCTGTCCTTGTGTTTCTCC 58.761 55.000 0.00 0.00 0.00 3.71
160 161 1.239347 GCTGTCCTTGTGTTTCTCCC 58.761 55.000 0.00 0.00 0.00 4.30
161 162 1.897560 CTGTCCTTGTGTTTCTCCCC 58.102 55.000 0.00 0.00 0.00 4.81
162 163 0.476771 TGTCCTTGTGTTTCTCCCCC 59.523 55.000 0.00 0.00 0.00 5.40
163 164 0.771755 GTCCTTGTGTTTCTCCCCCT 59.228 55.000 0.00 0.00 0.00 4.79
164 165 1.145119 GTCCTTGTGTTTCTCCCCCTT 59.855 52.381 0.00 0.00 0.00 3.95
165 166 1.144913 TCCTTGTGTTTCTCCCCCTTG 59.855 52.381 0.00 0.00 0.00 3.61
166 167 0.961753 CTTGTGTTTCTCCCCCTTGC 59.038 55.000 0.00 0.00 0.00 4.01
167 168 0.821711 TTGTGTTTCTCCCCCTTGCG 60.822 55.000 0.00 0.00 0.00 4.85
168 169 1.228154 GTGTTTCTCCCCCTTGCGT 60.228 57.895 0.00 0.00 0.00 5.24
169 170 0.822121 GTGTTTCTCCCCCTTGCGTT 60.822 55.000 0.00 0.00 0.00 4.84
170 171 0.536460 TGTTTCTCCCCCTTGCGTTC 60.536 55.000 0.00 0.00 0.00 3.95
171 172 0.536460 GTTTCTCCCCCTTGCGTTCA 60.536 55.000 0.00 0.00 0.00 3.18
172 173 0.250727 TTTCTCCCCCTTGCGTTCAG 60.251 55.000 0.00 0.00 0.00 3.02
198 199 4.329545 GGGTGCACCGGAGCAGAA 62.330 66.667 27.57 1.95 46.69 3.02
199 200 2.281484 GGTGCACCGGAGCAGAAA 60.281 61.111 27.57 1.52 46.69 2.52
200 201 2.617274 GGTGCACCGGAGCAGAAAC 61.617 63.158 27.57 14.84 46.69 2.78
201 202 2.664851 TGCACCGGAGCAGAAACG 60.665 61.111 23.37 0.00 40.11 3.60
213 214 3.643763 AGCAGAAACGAGTGTTCACTAG 58.356 45.455 5.40 8.31 37.31 2.57
215 216 3.802685 GCAGAAACGAGTGTTCACTAGTT 59.197 43.478 19.92 19.92 37.31 2.24
223 224 4.748102 CGAGTGTTCACTAGTTTGGCTAAA 59.252 41.667 5.40 0.00 0.00 1.85
292 302 0.386100 CATCTACCATCTCGTCGGCG 60.386 60.000 1.15 1.15 39.92 6.46
293 303 0.818445 ATCTACCATCTCGTCGGCGT 60.818 55.000 10.18 0.00 39.49 5.68
294 304 1.009900 CTACCATCTCGTCGGCGTC 60.010 63.158 10.18 0.00 39.49 5.19
295 305 2.697250 CTACCATCTCGTCGGCGTCG 62.697 65.000 19.85 19.85 39.49 5.12
296 306 4.907034 CCATCTCGTCGGCGTCGG 62.907 72.222 24.52 15.72 39.49 4.79
297 307 3.872728 CATCTCGTCGGCGTCGGA 61.873 66.667 24.52 19.87 39.49 4.55
298 308 3.574445 ATCTCGTCGGCGTCGGAG 61.574 66.667 24.52 19.19 39.49 4.63
299 309 4.747529 TCTCGTCGGCGTCGGAGA 62.748 66.667 24.52 20.90 39.49 3.71
328 338 3.059099 TGGCACATGAGCACGAGA 58.941 55.556 17.11 0.00 35.83 4.04
417 427 2.280404 ATAGGACCTCCTCGCCGACA 62.280 60.000 0.00 0.00 44.77 4.35
517 614 2.208619 TCCCGTTCGGTAGTTGGCA 61.209 57.895 10.36 0.00 0.00 4.92
549 646 2.380064 AGTTTGAAAGTGCATCCCCA 57.620 45.000 0.00 0.00 0.00 4.96
651 749 6.278363 ACTATGACTAATTTTCGTATGCCGT 58.722 36.000 0.00 0.00 37.94 5.68
654 752 4.117685 GACTAATTTTCGTATGCCGTCCT 58.882 43.478 0.00 0.00 37.94 3.85
655 753 4.510571 ACTAATTTTCGTATGCCGTCCTT 58.489 39.130 0.00 0.00 37.94 3.36
661 763 1.611977 TCGTATGCCGTCCTTGATAGG 59.388 52.381 0.00 0.00 37.92 2.57
707 4303 9.622004 TTACTGTTACATTTTTCGTTCAAACAA 57.378 25.926 0.00 0.00 0.00 2.83
713 6891 9.622004 TTACATTTTTCGTTCAAACAAGTTACA 57.378 25.926 0.00 0.00 0.00 2.41
714 6892 8.168681 ACATTTTTCGTTCAAACAAGTTACAG 57.831 30.769 0.00 0.00 0.00 2.74
715 6893 7.274686 ACATTTTTCGTTCAAACAAGTTACAGG 59.725 33.333 0.00 0.00 0.00 4.00
716 6894 4.886247 TTCGTTCAAACAAGTTACAGGG 57.114 40.909 0.00 0.00 0.00 4.45
723 6901 3.697619 AACAAGTTACAGGGAGCTACC 57.302 47.619 6.98 6.98 38.08 3.18
752 6930 5.705441 TGCCACCTCAAAAGAAGTAATACTG 59.295 40.000 0.00 0.00 0.00 2.74
827 7012 8.853345 CAATTAAAGTTTCGTGAATCTTCCATG 58.147 33.333 6.43 0.00 31.28 3.66
883 8881 0.611200 TGGTGACCACTTATGTCCCG 59.389 55.000 0.00 0.00 31.60 5.14
1091 9089 2.348998 CACCTCCTCAGCCACACC 59.651 66.667 0.00 0.00 0.00 4.16
1092 9090 2.205462 ACCTCCTCAGCCACACCT 59.795 61.111 0.00 0.00 0.00 4.00
1098 9100 1.260538 CCTCAGCCACACCTAGAGCA 61.261 60.000 0.00 0.00 0.00 4.26
1322 9324 2.444895 GAGCTGGAGGTCCCCGAT 60.445 66.667 0.00 0.00 36.62 4.18
1585 9587 6.765512 GCTTTACCTATCTCTCTTTGCAAGAT 59.234 38.462 0.00 0.74 36.82 2.40
1586 9588 7.928706 GCTTTACCTATCTCTCTTTGCAAGATA 59.071 37.037 0.00 2.03 36.82 1.98
1594 9596 7.936950 TCTCTCTTTGCAAGATAATATCACG 57.063 36.000 0.00 0.00 36.82 4.35
1597 9599 6.701841 TCTCTTTGCAAGATAATATCACGGAC 59.298 38.462 0.00 0.00 36.82 4.79
1598 9600 5.758296 TCTTTGCAAGATAATATCACGGACC 59.242 40.000 0.00 0.00 31.20 4.46
1599 9601 4.002906 TGCAAGATAATATCACGGACCC 57.997 45.455 2.84 0.00 0.00 4.46
1600 9602 3.646162 TGCAAGATAATATCACGGACCCT 59.354 43.478 2.84 0.00 0.00 4.34
1601 9603 3.997021 GCAAGATAATATCACGGACCCTG 59.003 47.826 2.84 0.00 0.00 4.45
1602 9604 4.262463 GCAAGATAATATCACGGACCCTGA 60.262 45.833 2.84 0.00 0.00 3.86
1603 9605 5.473931 CAAGATAATATCACGGACCCTGAG 58.526 45.833 2.84 0.00 0.00 3.35
1604 9606 4.999310 AGATAATATCACGGACCCTGAGA 58.001 43.478 2.84 0.00 0.00 3.27
1605 9607 4.767928 AGATAATATCACGGACCCTGAGAC 59.232 45.833 2.84 0.00 0.00 3.36
1606 9608 1.705873 ATATCACGGACCCTGAGACC 58.294 55.000 0.00 0.00 0.00 3.85
1608 9610 0.972983 ATCACGGACCCTGAGACCTG 60.973 60.000 0.00 0.00 0.00 4.00
1610 9612 1.908793 ACGGACCCTGAGACCTGTG 60.909 63.158 0.00 0.00 0.00 3.66
1611 9613 1.908793 CGGACCCTGAGACCTGTGT 60.909 63.158 0.00 0.00 0.00 3.72
1612 9614 0.611062 CGGACCCTGAGACCTGTGTA 60.611 60.000 0.00 0.00 0.00 2.90
1614 9616 1.975680 GGACCCTGAGACCTGTGTAAA 59.024 52.381 0.00 0.00 0.00 2.01
1615 9617 2.289506 GGACCCTGAGACCTGTGTAAAC 60.290 54.545 0.00 0.00 0.00 2.01
1616 9618 1.697982 ACCCTGAGACCTGTGTAAACC 59.302 52.381 0.00 0.00 0.00 3.27
1617 9619 1.003233 CCCTGAGACCTGTGTAAACCC 59.997 57.143 0.00 0.00 0.00 4.11
1618 9620 1.978580 CCTGAGACCTGTGTAAACCCT 59.021 52.381 0.00 0.00 0.00 4.34
1619 9621 2.289694 CCTGAGACCTGTGTAAACCCTG 60.290 54.545 0.00 0.00 0.00 4.45
1620 9622 2.632996 CTGAGACCTGTGTAAACCCTGA 59.367 50.000 0.00 0.00 0.00 3.86
1621 9623 2.632996 TGAGACCTGTGTAAACCCTGAG 59.367 50.000 0.00 0.00 0.00 3.35
1622 9624 2.897969 GAGACCTGTGTAAACCCTGAGA 59.102 50.000 0.00 0.00 0.00 3.27
1623 9625 2.900546 AGACCTGTGTAAACCCTGAGAG 59.099 50.000 0.00 0.00 0.00 3.20
1624 9626 1.348036 ACCTGTGTAAACCCTGAGAGC 59.652 52.381 0.00 0.00 0.00 4.09
1625 9627 1.625818 CCTGTGTAAACCCTGAGAGCT 59.374 52.381 0.00 0.00 0.00 4.09
1626 9628 2.613977 CCTGTGTAAACCCTGAGAGCTG 60.614 54.545 0.00 0.00 0.00 4.24
1627 9629 2.300152 CTGTGTAAACCCTGAGAGCTGA 59.700 50.000 0.00 0.00 0.00 4.26
1628 9630 2.906389 TGTGTAAACCCTGAGAGCTGAT 59.094 45.455 0.00 0.00 0.00 2.90
1629 9631 3.327757 TGTGTAAACCCTGAGAGCTGATT 59.672 43.478 0.00 0.00 0.00 2.57
1641 9643 2.099263 AGAGCTGATTTCATGCATGCAC 59.901 45.455 25.37 9.84 0.00 4.57
1648 9650 1.175654 TTCATGCATGCACGGACATT 58.824 45.000 25.37 1.29 0.00 2.71
1663 9669 2.627945 GACATTGCCAGATACACCGAA 58.372 47.619 0.00 0.00 0.00 4.30
1758 9768 9.520204 TTTTTGTACCGTAAGATATACTACTGC 57.480 33.333 0.00 0.00 43.02 4.40
1907 9933 7.844779 ACATCTTACCTGGGACTTTCTTCTATA 59.155 37.037 0.00 0.00 0.00 1.31
1908 9934 8.875168 CATCTTACCTGGGACTTTCTTCTATAT 58.125 37.037 0.00 0.00 0.00 0.86
1909 9935 8.480133 TCTTACCTGGGACTTTCTTCTATATC 57.520 38.462 0.00 0.00 0.00 1.63
1951 9977 7.815549 TGCTACGACTTGTTTCAATATGAGTTA 59.184 33.333 0.00 0.00 0.00 2.24
1979 10012 9.719355 ACAATTTCCTCATTATTTTGTTTACCC 57.281 29.630 0.00 0.00 0.00 3.69
1991 10024 2.414612 TGTTTACCCACAAGGAGACCT 58.585 47.619 0.00 0.00 39.89 3.85
1995 10028 1.821088 ACCCACAAGGAGACCTCTTT 58.179 50.000 0.00 0.00 39.89 2.52
1999 10032 2.417719 CACAAGGAGACCTCTTTTCCG 58.582 52.381 0.00 0.00 36.11 4.30
2020 10053 3.745975 CGCACTCATTTTTGTCCTCACTA 59.254 43.478 0.00 0.00 0.00 2.74
2043 10076 5.727434 ACTGATTTGCTCCAATCCATTTTC 58.273 37.500 0.00 0.00 0.00 2.29
2067 10100 6.258287 TCAATGAAGCTTTGGACAACAATTTG 59.742 34.615 0.00 0.00 39.21 2.32
2072 10105 6.029346 AGCTTTGGACAACAATTTGATAGG 57.971 37.500 2.79 0.00 39.21 2.57
2089 10122 6.508030 TGATAGGTTTGCCCATTATCACTA 57.492 37.500 0.00 0.00 29.69 2.74
2091 10124 6.998074 TGATAGGTTTGCCCATTATCACTAAG 59.002 38.462 0.00 0.00 29.69 2.18
2094 10127 6.435164 AGGTTTGCCCATTATCACTAAGAAT 58.565 36.000 0.00 0.00 34.66 2.40
2125 10159 9.160496 GAGATTTCCTTATAATCCAGTATGCAG 57.840 37.037 0.00 0.00 33.45 4.41
2126 10160 8.884323 AGATTTCCTTATAATCCAGTATGCAGA 58.116 33.333 0.00 0.00 33.45 4.26
2130 10164 7.615403 TCCTTATAATCCAGTATGCAGATGAC 58.385 38.462 0.00 0.00 31.97 3.06
2133 10167 2.988010 TCCAGTATGCAGATGACACC 57.012 50.000 0.00 0.00 31.97 4.16
2147 10181 6.016860 GCAGATGACACCATTATTATCTTGCA 60.017 38.462 0.00 0.00 32.09 4.08
2182 10216 5.718146 TGCAAATTCAACAAGTTCAGAACA 58.282 33.333 15.85 0.00 0.00 3.18
2196 10230 9.146984 CAAGTTCAGAACATATTGATGCATTTT 57.853 29.630 15.85 0.00 36.43 1.82
2197 10231 8.922058 AGTTCAGAACATATTGATGCATTTTC 57.078 30.769 15.85 0.00 36.43 2.29
2250 10284 3.707611 ACAAATCCATGATGGTTCCCATG 59.292 43.478 11.87 6.20 45.26 3.66
2255 10289 3.052717 TCCATGATGGTTCCCATGAATGT 60.053 43.478 11.87 0.00 45.26 2.71
2268 10302 4.516698 CCCATGAATGTACCTGCTCATAAC 59.483 45.833 0.00 0.00 0.00 1.89
2272 10306 5.988287 TGAATGTACCTGCTCATAACATCA 58.012 37.500 0.00 0.00 30.71 3.07
2295 10329 5.428184 AGCAACTCTCAGCTATTTTAGGT 57.572 39.130 0.00 0.00 39.78 3.08
2297 10331 5.645497 AGCAACTCTCAGCTATTTTAGGTTG 59.355 40.000 0.00 0.00 39.78 3.77
2298 10332 5.412904 GCAACTCTCAGCTATTTTAGGTTGT 59.587 40.000 0.00 0.00 35.45 3.32
2302 10336 3.352648 TCAGCTATTTTAGGTTGTGCCC 58.647 45.455 0.00 0.00 38.26 5.36
2304 10338 3.089284 AGCTATTTTAGGTTGTGCCCAC 58.911 45.455 0.00 0.00 38.26 4.61
2305 10339 2.823154 GCTATTTTAGGTTGTGCCCACA 59.177 45.455 0.00 0.00 39.98 4.17
2309 10343 2.851263 TTAGGTTGTGCCCACAGTAG 57.149 50.000 1.02 0.00 42.94 2.57
2313 10347 2.028876 GGTTGTGCCCACAGTAGTTTT 58.971 47.619 1.02 0.00 42.94 2.43
2359 10393 3.831911 TCTTGGCATTTCTAAACCCAAGG 59.168 43.478 23.15 13.00 43.64 3.61
2365 10399 5.230182 GCATTTCTAAACCCAAGGTTGAAG 58.770 41.667 0.00 1.72 46.20 3.02
2400 10445 3.616956 TGGATCTAGACTTGCTGGTTG 57.383 47.619 0.00 0.00 0.00 3.77
2419 10464 2.715046 TGCTCCACAATGCTTTCCTAG 58.285 47.619 0.00 0.00 0.00 3.02
2448 10493 6.675987 AGAAACTCATTCTTGTGAAATCTGC 58.324 36.000 0.00 0.00 46.39 4.26
2469 10514 4.159879 TGCTTTCACTAGCCTACCTACTTC 59.840 45.833 0.00 0.00 40.49 3.01
2477 10522 3.995636 AGCCTACCTACTTCCTTCATGA 58.004 45.455 0.00 0.00 0.00 3.07
2491 10536 4.081420 TCCTTCATGAGCAGTTTAGACCTC 60.081 45.833 0.00 0.00 0.00 3.85
2496 10541 1.840635 GAGCAGTTTAGACCTCCCCAT 59.159 52.381 0.00 0.00 0.00 4.00
2512 10557 1.063717 CCCATAGGAGTTGTTGGCCAT 60.064 52.381 6.09 0.00 33.47 4.40
2560 10605 4.453480 TTGGAGGAAATATGGGATGGAC 57.547 45.455 0.00 0.00 0.00 4.02
2562 10607 2.637872 GGAGGAAATATGGGATGGACGA 59.362 50.000 0.00 0.00 0.00 4.20
2563 10608 3.557264 GGAGGAAATATGGGATGGACGAC 60.557 52.174 0.00 0.00 0.00 4.34
2567 10612 3.753294 AATATGGGATGGACGACAGAC 57.247 47.619 0.00 0.00 0.00 3.51
2585 10630 7.853524 CGACAGACGTACTTCTCTTATATTCT 58.146 38.462 0.00 0.00 37.22 2.40
2586 10631 8.336806 CGACAGACGTACTTCTCTTATATTCTT 58.663 37.037 0.00 0.00 37.22 2.52
2587 10632 9.440784 GACAGACGTACTTCTCTTATATTCTTG 57.559 37.037 0.00 0.00 0.00 3.02
2589 10634 7.863375 CAGACGTACTTCTCTTATATTCTTGGG 59.137 40.741 0.00 0.00 0.00 4.12
2590 10635 7.778853 AGACGTACTTCTCTTATATTCTTGGGA 59.221 37.037 0.00 0.00 0.00 4.37
2591 10636 8.480133 ACGTACTTCTCTTATATTCTTGGGAT 57.520 34.615 0.00 0.00 0.00 3.85
2605 10650 4.831107 TCTTGGGATAAAATTTGCCTTGC 58.169 39.130 0.00 0.00 0.00 4.01
2606 10651 4.531732 TCTTGGGATAAAATTTGCCTTGCT 59.468 37.500 0.00 0.00 0.00 3.91
2607 10652 5.719085 TCTTGGGATAAAATTTGCCTTGCTA 59.281 36.000 0.00 0.00 0.00 3.49
2608 10653 6.212388 TCTTGGGATAAAATTTGCCTTGCTAA 59.788 34.615 0.00 0.00 0.00 3.09
2609 10654 5.976458 TGGGATAAAATTTGCCTTGCTAAG 58.024 37.500 0.00 0.00 0.00 2.18
2625 10670 2.704572 CTAAGGAAGCTGGTGGACTTG 58.295 52.381 0.00 0.00 0.00 3.16
2626 10671 0.111253 AAGGAAGCTGGTGGACTTGG 59.889 55.000 0.00 0.00 0.00 3.61
2627 10672 0.768221 AGGAAGCTGGTGGACTTGGA 60.768 55.000 0.00 0.00 0.00 3.53
2628 10673 0.322008 GGAAGCTGGTGGACTTGGAG 60.322 60.000 0.00 0.00 0.00 3.86
2720 10765 1.212935 CTCCCTTGGGTGGACCTTATG 59.787 57.143 5.51 0.00 41.11 1.90
2747 10792 4.044444 AGCTCCTACTATACTTCTACCCCC 59.956 50.000 0.00 0.00 0.00 5.40
2753 10798 4.060192 ACTATACTTCTACCCCCTCCTCA 58.940 47.826 0.00 0.00 0.00 3.86
2759 10804 1.123928 CTACCCCCTCCTCATGTCAC 58.876 60.000 0.00 0.00 0.00 3.67
2767 10812 2.420642 CTCCTCATGTCACACCTGTTG 58.579 52.381 0.00 0.00 0.00 3.33
2803 10848 9.803315 GGTGGAAGTTTATTCTCAAATTAATCC 57.197 33.333 0.00 0.00 0.00 3.01
2835 10881 1.309950 CCATCTCTTCCTGCAGCATG 58.690 55.000 8.66 0.00 40.87 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.606096 TCATATGCCCGACCGTATGG 59.394 55.000 0.00 0.00 42.84 2.74
19 20 2.066262 GTTCATATGCCCGACCGTATG 58.934 52.381 0.00 7.69 36.49 2.39
20 21 1.968493 AGTTCATATGCCCGACCGTAT 59.032 47.619 0.00 0.00 0.00 3.06
21 22 1.405872 AGTTCATATGCCCGACCGTA 58.594 50.000 0.00 0.00 0.00 4.02
22 23 1.405872 TAGTTCATATGCCCGACCGT 58.594 50.000 0.00 0.00 0.00 4.83
23 24 2.519377 TTAGTTCATATGCCCGACCG 57.481 50.000 0.00 0.00 0.00 4.79
24 25 2.993899 CGATTAGTTCATATGCCCGACC 59.006 50.000 0.00 0.00 0.00 4.79
25 26 2.993899 CCGATTAGTTCATATGCCCGAC 59.006 50.000 0.00 0.00 0.00 4.79
26 27 2.028476 CCCGATTAGTTCATATGCCCGA 60.028 50.000 0.00 0.00 0.00 5.14
27 28 2.289444 ACCCGATTAGTTCATATGCCCG 60.289 50.000 0.00 0.00 0.00 6.13
28 29 3.335579 GACCCGATTAGTTCATATGCCC 58.664 50.000 0.00 0.00 0.00 5.36
29 30 2.993899 CGACCCGATTAGTTCATATGCC 59.006 50.000 0.00 0.00 0.00 4.40
30 31 3.650139 ACGACCCGATTAGTTCATATGC 58.350 45.455 0.00 0.00 0.00 3.14
31 32 4.849926 CGTACGACCCGATTAGTTCATATG 59.150 45.833 10.44 0.00 0.00 1.78
32 33 4.083110 CCGTACGACCCGATTAGTTCATAT 60.083 45.833 18.76 0.00 0.00 1.78
33 34 3.250762 CCGTACGACCCGATTAGTTCATA 59.749 47.826 18.76 0.00 0.00 2.15
34 35 2.033801 CCGTACGACCCGATTAGTTCAT 59.966 50.000 18.76 0.00 0.00 2.57
35 36 1.401552 CCGTACGACCCGATTAGTTCA 59.598 52.381 18.76 0.00 0.00 3.18
36 37 1.268743 CCCGTACGACCCGATTAGTTC 60.269 57.143 18.76 0.00 0.00 3.01
37 38 0.740737 CCCGTACGACCCGATTAGTT 59.259 55.000 18.76 0.00 0.00 2.24
38 39 1.728490 GCCCGTACGACCCGATTAGT 61.728 60.000 18.76 0.00 0.00 2.24
39 40 1.008079 GCCCGTACGACCCGATTAG 60.008 63.158 18.76 0.00 0.00 1.73
40 41 2.489275 GGCCCGTACGACCCGATTA 61.489 63.158 18.76 0.00 0.00 1.75
41 42 3.841758 GGCCCGTACGACCCGATT 61.842 66.667 18.76 0.00 0.00 3.34
47 48 4.446413 CTGTGGGGCCCGTACGAC 62.446 72.222 19.83 10.81 0.00 4.34
50 51 4.091939 GTCCTGTGGGGCCCGTAC 62.092 72.222 19.83 18.12 34.39 3.67
51 52 4.326227 AGTCCTGTGGGGCCCGTA 62.326 66.667 19.83 8.37 38.13 4.02
55 56 3.403558 GAGGAGTCCTGTGGGGCC 61.404 72.222 18.90 0.00 38.13 5.80
56 57 3.775654 CGAGGAGTCCTGTGGGGC 61.776 72.222 18.90 0.00 37.52 5.80
57 58 2.037367 TCGAGGAGTCCTGTGGGG 59.963 66.667 18.90 0.32 31.76 4.96
58 59 1.599606 CTGTCGAGGAGTCCTGTGGG 61.600 65.000 18.90 3.01 31.76 4.61
59 60 1.886585 CTGTCGAGGAGTCCTGTGG 59.113 63.158 18.90 5.75 31.76 4.17
60 61 1.214062 GCTGTCGAGGAGTCCTGTG 59.786 63.158 18.90 9.17 31.76 3.66
61 62 0.328592 TAGCTGTCGAGGAGTCCTGT 59.671 55.000 18.90 0.00 31.76 4.00
62 63 1.686355 ATAGCTGTCGAGGAGTCCTG 58.314 55.000 18.90 9.34 31.76 3.86
63 64 2.172930 TGTATAGCTGTCGAGGAGTCCT 59.827 50.000 12.85 12.85 36.03 3.85
64 65 2.291190 GTGTATAGCTGTCGAGGAGTCC 59.709 54.545 0.00 0.00 0.00 3.85
65 66 2.943690 TGTGTATAGCTGTCGAGGAGTC 59.056 50.000 0.00 0.00 0.00 3.36
66 67 2.683867 GTGTGTATAGCTGTCGAGGAGT 59.316 50.000 0.00 0.00 0.00 3.85
67 68 2.286477 CGTGTGTATAGCTGTCGAGGAG 60.286 54.545 0.00 0.00 0.00 3.69
68 69 1.669265 CGTGTGTATAGCTGTCGAGGA 59.331 52.381 0.00 0.00 0.00 3.71
69 70 1.268589 CCGTGTGTATAGCTGTCGAGG 60.269 57.143 0.00 0.00 0.00 4.63
70 71 1.268589 CCCGTGTGTATAGCTGTCGAG 60.269 57.143 0.00 0.00 0.00 4.04
71 72 0.736636 CCCGTGTGTATAGCTGTCGA 59.263 55.000 0.00 0.00 0.00 4.20
72 73 0.870307 GCCCGTGTGTATAGCTGTCG 60.870 60.000 0.00 0.00 0.00 4.35
73 74 0.174845 TGCCCGTGTGTATAGCTGTC 59.825 55.000 0.00 0.00 0.00 3.51
74 75 0.611200 TTGCCCGTGTGTATAGCTGT 59.389 50.000 0.00 0.00 0.00 4.40
75 76 1.732941 TTTGCCCGTGTGTATAGCTG 58.267 50.000 0.00 0.00 0.00 4.24
76 77 2.483014 TTTTGCCCGTGTGTATAGCT 57.517 45.000 0.00 0.00 0.00 3.32
93 94 0.036306 AGGGGCACGATCGTCTTTTT 59.964 50.000 19.84 1.27 0.00 1.94
94 95 0.391263 GAGGGGCACGATCGTCTTTT 60.391 55.000 19.84 3.01 0.00 2.27
95 96 1.218316 GAGGGGCACGATCGTCTTT 59.782 57.895 19.84 2.22 0.00 2.52
96 97 2.893398 GAGGGGCACGATCGTCTT 59.107 61.111 19.84 3.44 0.00 3.01
97 98 3.518998 CGAGGGGCACGATCGTCT 61.519 66.667 19.84 12.61 0.00 4.18
98 99 3.823330 ACGAGGGGCACGATCGTC 61.823 66.667 19.84 13.04 45.92 4.20
100 101 2.125673 AAACGAGGGGCACGATCG 60.126 61.111 14.88 14.88 42.04 3.69
101 102 2.165301 CGAAACGAGGGGCACGATC 61.165 63.158 0.00 0.00 34.70 3.69
102 103 2.125673 CGAAACGAGGGGCACGAT 60.126 61.111 0.00 0.00 34.70 3.73
103 104 2.858862 TTCGAAACGAGGGGCACGA 61.859 57.895 0.00 0.00 37.14 4.35
104 105 2.356553 TTCGAAACGAGGGGCACG 60.357 61.111 0.00 0.00 37.14 5.34
105 106 2.322830 GGTTCGAAACGAGGGGCAC 61.323 63.158 0.00 0.00 37.14 5.01
106 107 2.031465 GGTTCGAAACGAGGGGCA 59.969 61.111 0.00 0.00 37.14 5.36
107 108 3.116531 CGGTTCGAAACGAGGGGC 61.117 66.667 30.97 0.00 37.14 5.80
108 109 0.881600 AAACGGTTCGAAACGAGGGG 60.882 55.000 39.48 12.99 37.14 4.79
109 110 0.939419 AAAACGGTTCGAAACGAGGG 59.061 50.000 39.48 13.39 37.14 4.30
110 111 2.368685 CAAAAACGGTTCGAAACGAGG 58.631 47.619 39.48 19.61 37.14 4.63
111 112 2.223089 ACCAAAAACGGTTCGAAACGAG 60.223 45.455 39.48 21.91 34.91 4.18
112 113 1.736681 ACCAAAAACGGTTCGAAACGA 59.263 42.857 39.48 0.00 34.91 3.85
113 114 2.177001 ACCAAAAACGGTTCGAAACG 57.823 45.000 32.45 32.45 34.91 3.60
114 115 5.173673 GGATTAACCAAAAACGGTTCGAAAC 59.826 40.000 2.16 2.16 46.60 2.78
115 116 5.067544 AGGATTAACCAAAAACGGTTCGAAA 59.932 36.000 0.00 0.00 46.60 3.46
116 117 4.579753 AGGATTAACCAAAAACGGTTCGAA 59.420 37.500 0.00 0.00 46.60 3.71
117 118 4.023878 CAGGATTAACCAAAAACGGTTCGA 60.024 41.667 0.00 0.00 46.60 3.71
118 119 4.223659 CAGGATTAACCAAAAACGGTTCG 58.776 43.478 0.00 0.00 46.60 3.95
119 120 4.552355 CCAGGATTAACCAAAAACGGTTC 58.448 43.478 0.00 0.00 46.60 3.62
121 122 2.297880 GCCAGGATTAACCAAAAACGGT 59.702 45.455 0.00 0.00 42.71 4.83
122 123 2.560981 AGCCAGGATTAACCAAAAACGG 59.439 45.455 0.00 0.00 42.04 4.44
123 124 3.005367 ACAGCCAGGATTAACCAAAAACG 59.995 43.478 0.00 0.00 42.04 3.60
124 125 4.556233 GACAGCCAGGATTAACCAAAAAC 58.444 43.478 0.00 0.00 42.04 2.43
125 126 3.576550 GGACAGCCAGGATTAACCAAAAA 59.423 43.478 0.00 0.00 42.04 1.94
126 127 3.161866 GGACAGCCAGGATTAACCAAAA 58.838 45.455 0.00 0.00 42.04 2.44
127 128 2.378547 AGGACAGCCAGGATTAACCAAA 59.621 45.455 0.00 0.00 42.04 3.28
128 129 1.992557 AGGACAGCCAGGATTAACCAA 59.007 47.619 0.00 0.00 42.04 3.67
129 130 1.668826 AGGACAGCCAGGATTAACCA 58.331 50.000 0.00 0.00 42.04 3.67
130 131 2.290960 ACAAGGACAGCCAGGATTAACC 60.291 50.000 0.00 0.00 36.29 2.85
131 132 2.749621 CACAAGGACAGCCAGGATTAAC 59.250 50.000 0.00 0.00 36.29 2.01
132 133 2.375174 ACACAAGGACAGCCAGGATTAA 59.625 45.455 0.00 0.00 36.29 1.40
133 134 1.985159 ACACAAGGACAGCCAGGATTA 59.015 47.619 0.00 0.00 36.29 1.75
134 135 0.773644 ACACAAGGACAGCCAGGATT 59.226 50.000 0.00 0.00 36.29 3.01
135 136 0.773644 AACACAAGGACAGCCAGGAT 59.226 50.000 0.00 0.00 36.29 3.24
136 137 0.550914 AAACACAAGGACAGCCAGGA 59.449 50.000 0.00 0.00 36.29 3.86
137 138 0.954452 GAAACACAAGGACAGCCAGG 59.046 55.000 0.00 0.00 36.29 4.45
138 139 1.876156 GAGAAACACAAGGACAGCCAG 59.124 52.381 0.00 0.00 36.29 4.85
139 140 1.476833 GGAGAAACACAAGGACAGCCA 60.477 52.381 0.00 0.00 36.29 4.75
140 141 1.239347 GGAGAAACACAAGGACAGCC 58.761 55.000 0.00 0.00 0.00 4.85
141 142 1.239347 GGGAGAAACACAAGGACAGC 58.761 55.000 0.00 0.00 0.00 4.40
142 143 1.545651 GGGGGAGAAACACAAGGACAG 60.546 57.143 0.00 0.00 0.00 3.51
143 144 0.476771 GGGGGAGAAACACAAGGACA 59.523 55.000 0.00 0.00 0.00 4.02
144 145 0.771755 AGGGGGAGAAACACAAGGAC 59.228 55.000 0.00 0.00 0.00 3.85
145 146 1.144913 CAAGGGGGAGAAACACAAGGA 59.855 52.381 0.00 0.00 0.00 3.36
146 147 1.620822 CAAGGGGGAGAAACACAAGG 58.379 55.000 0.00 0.00 0.00 3.61
147 148 0.961753 GCAAGGGGGAGAAACACAAG 59.038 55.000 0.00 0.00 0.00 3.16
148 149 0.821711 CGCAAGGGGGAGAAACACAA 60.822 55.000 0.00 0.00 0.00 3.33
149 150 1.228124 CGCAAGGGGGAGAAACACA 60.228 57.895 0.00 0.00 0.00 3.72
150 151 0.822121 AACGCAAGGGGGAGAAACAC 60.822 55.000 0.00 0.00 46.39 3.32
151 152 0.536460 GAACGCAAGGGGGAGAAACA 60.536 55.000 0.00 0.00 46.39 2.83
152 153 0.536460 TGAACGCAAGGGGGAGAAAC 60.536 55.000 0.00 0.00 46.39 2.78
153 154 0.250727 CTGAACGCAAGGGGGAGAAA 60.251 55.000 0.00 0.00 46.39 2.52
154 155 1.374947 CTGAACGCAAGGGGGAGAA 59.625 57.895 0.00 0.00 46.39 2.87
155 156 3.068881 CTGAACGCAAGGGGGAGA 58.931 61.111 0.00 0.00 46.39 3.71
156 157 2.747855 GCTGAACGCAAGGGGGAG 60.748 66.667 0.00 0.00 46.39 4.30
157 158 4.344865 GGCTGAACGCAAGGGGGA 62.345 66.667 0.00 0.00 46.39 4.81
159 160 4.659172 TGGGCTGAACGCAAGGGG 62.659 66.667 0.00 0.00 46.39 4.79
160 161 3.058160 CTGGGCTGAACGCAAGGG 61.058 66.667 0.00 0.00 41.26 3.95
161 162 3.058160 CCTGGGCTGAACGCAAGG 61.058 66.667 0.00 0.00 41.26 3.61
162 163 3.058160 CCCTGGGCTGAACGCAAG 61.058 66.667 0.00 0.00 41.26 4.01
163 164 4.659172 CCCCTGGGCTGAACGCAA 62.659 66.667 7.39 0.00 41.26 4.85
181 182 3.842925 TTTCTGCTCCGGTGCACCC 62.843 63.158 29.95 16.24 38.12 4.61
182 183 2.281484 TTTCTGCTCCGGTGCACC 60.281 61.111 26.46 26.78 38.12 5.01
183 184 2.946762 GTTTCTGCTCCGGTGCAC 59.053 61.111 26.46 13.54 38.12 4.57
184 185 2.664851 CGTTTCTGCTCCGGTGCA 60.665 61.111 27.98 27.98 41.05 4.57
185 186 2.357034 TCGTTTCTGCTCCGGTGC 60.357 61.111 21.41 21.41 0.00 5.01
186 187 1.006102 ACTCGTTTCTGCTCCGGTG 60.006 57.895 0.00 0.00 0.00 4.94
187 188 1.006102 CACTCGTTTCTGCTCCGGT 60.006 57.895 0.00 0.00 0.00 5.28
188 189 0.600255 AACACTCGTTTCTGCTCCGG 60.600 55.000 0.00 0.00 28.09 5.14
189 190 0.784778 GAACACTCGTTTCTGCTCCG 59.215 55.000 0.00 0.00 34.75 4.63
190 191 1.527311 GTGAACACTCGTTTCTGCTCC 59.473 52.381 0.00 0.00 34.75 4.70
191 192 2.474816 AGTGAACACTCGTTTCTGCTC 58.525 47.619 1.32 0.00 36.92 4.26
192 193 2.604046 AGTGAACACTCGTTTCTGCT 57.396 45.000 1.32 0.00 36.92 4.24
193 194 3.381949 ACTAGTGAACACTCGTTTCTGC 58.618 45.455 10.81 0.00 42.54 4.26
198 199 2.870411 GCCAAACTAGTGAACACTCGTT 59.130 45.455 15.62 15.62 45.47 3.85
199 200 2.102588 AGCCAAACTAGTGAACACTCGT 59.897 45.455 10.81 8.37 42.54 4.18
200 201 2.755650 AGCCAAACTAGTGAACACTCG 58.244 47.619 10.81 7.74 42.54 4.18
201 202 6.613755 TTTTAGCCAAACTAGTGAACACTC 57.386 37.500 10.81 0.00 42.54 3.51
213 214 9.346725 CATTGAGACTATTCTTTTTAGCCAAAC 57.653 33.333 0.00 0.00 29.47 2.93
215 216 7.362920 GGCATTGAGACTATTCTTTTTAGCCAA 60.363 37.037 0.00 0.00 34.66 4.52
223 224 9.851686 TTGTATATGGCATTGAGACTATTCTTT 57.148 29.630 4.78 0.00 29.47 2.52
292 302 2.939103 CCATCTTTTCCATGTCTCCGAC 59.061 50.000 0.00 0.00 0.00 4.79
293 303 2.680805 GCCATCTTTTCCATGTCTCCGA 60.681 50.000 0.00 0.00 0.00 4.55
294 304 1.672881 GCCATCTTTTCCATGTCTCCG 59.327 52.381 0.00 0.00 0.00 4.63
295 305 2.424956 GTGCCATCTTTTCCATGTCTCC 59.575 50.000 0.00 0.00 0.00 3.71
296 306 3.084039 TGTGCCATCTTTTCCATGTCTC 58.916 45.455 0.00 0.00 0.00 3.36
297 307 3.159213 TGTGCCATCTTTTCCATGTCT 57.841 42.857 0.00 0.00 0.00 3.41
298 308 3.444742 TCATGTGCCATCTTTTCCATGTC 59.555 43.478 0.00 0.00 33.27 3.06
299 309 3.433343 TCATGTGCCATCTTTTCCATGT 58.567 40.909 0.00 0.00 33.27 3.21
300 310 3.737047 GCTCATGTGCCATCTTTTCCATG 60.737 47.826 8.59 0.00 0.00 3.66
390 400 0.106116 AGGAGGTCCTATGGTCGTCC 60.106 60.000 12.33 12.33 46.48 4.79
417 427 0.541863 CCCTAGTCATGGCTCGGTTT 59.458 55.000 16.06 0.00 0.00 3.27
517 614 7.040478 TGCACTTTCAAACTATTAATCAGCACT 60.040 33.333 0.00 0.00 0.00 4.40
654 752 6.661777 TCATCATTGATGTTCCACCTATCAA 58.338 36.000 22.64 0.00 42.83 2.57
655 753 6.251255 TCATCATTGATGTTCCACCTATCA 57.749 37.500 22.64 0.28 40.55 2.15
692 4288 6.072064 TCCCTGTAACTTGTTTGAACGAAAAA 60.072 34.615 0.00 0.00 0.00 1.94
707 4303 2.320681 TGTGGTAGCTCCCTGTAACT 57.679 50.000 0.00 0.00 34.77 2.24
713 6891 1.207488 TGGCAATGTGGTAGCTCCCT 61.207 55.000 0.00 0.00 34.77 4.20
714 6892 1.032114 GTGGCAATGTGGTAGCTCCC 61.032 60.000 0.00 0.00 34.77 4.30
715 6893 1.032114 GGTGGCAATGTGGTAGCTCC 61.032 60.000 0.00 0.00 0.00 4.70
716 6894 0.035056 AGGTGGCAATGTGGTAGCTC 60.035 55.000 0.00 0.00 0.00 4.09
723 6901 3.068590 ACTTCTTTTGAGGTGGCAATGTG 59.931 43.478 0.00 0.00 37.37 3.21
752 6930 2.101082 GTGTGGCTACTAGCTAGGAACC 59.899 54.545 24.35 20.83 41.99 3.62
827 7012 0.312102 GCGAGGCCAAATGAATAGCC 59.688 55.000 5.01 0.00 46.13 3.93
857 7042 1.541310 TAAGTGGTCACCAGAGCCGG 61.541 60.000 0.00 0.00 41.53 6.13
914 8912 1.431440 GCTGCTCATCTCGTCGTCT 59.569 57.895 0.00 0.00 0.00 4.18
1115 9117 2.254464 GGCGGCCATTGCTAGCTAC 61.254 63.158 15.62 0.46 39.69 3.58
1259 9261 1.736645 CACCTTGTACGTCGCCTGG 60.737 63.158 0.00 0.00 0.00 4.45
1322 9324 1.339342 TGGTCGAGGATGTAGACGTCA 60.339 52.381 19.50 0.00 35.87 4.35
1585 9587 3.117246 AGGTCTCAGGGTCCGTGATATTA 60.117 47.826 14.50 0.00 0.00 0.98
1586 9588 2.040178 GGTCTCAGGGTCCGTGATATT 58.960 52.381 14.50 0.00 0.00 1.28
1589 9591 0.972983 CAGGTCTCAGGGTCCGTGAT 60.973 60.000 14.50 0.00 0.00 3.06
1590 9592 1.606601 CAGGTCTCAGGGTCCGTGA 60.607 63.158 13.51 13.51 0.00 4.35
1591 9593 1.908793 ACAGGTCTCAGGGTCCGTG 60.909 63.158 5.13 5.13 0.00 4.94
1592 9594 1.908793 CACAGGTCTCAGGGTCCGT 60.909 63.158 0.00 0.00 0.00 4.69
1594 9596 1.640917 TTACACAGGTCTCAGGGTCC 58.359 55.000 0.00 0.00 0.00 4.46
1597 9599 1.003233 GGGTTTACACAGGTCTCAGGG 59.997 57.143 0.00 0.00 0.00 4.45
1598 9600 1.978580 AGGGTTTACACAGGTCTCAGG 59.021 52.381 0.00 0.00 0.00 3.86
1599 9601 2.632996 TCAGGGTTTACACAGGTCTCAG 59.367 50.000 0.00 0.00 0.00 3.35
1600 9602 2.632996 CTCAGGGTTTACACAGGTCTCA 59.367 50.000 0.00 0.00 0.00 3.27
1601 9603 2.897969 TCTCAGGGTTTACACAGGTCTC 59.102 50.000 0.00 0.00 0.00 3.36
1602 9604 2.900546 CTCTCAGGGTTTACACAGGTCT 59.099 50.000 0.00 0.00 0.00 3.85
1603 9605 2.613223 GCTCTCAGGGTTTACACAGGTC 60.613 54.545 0.00 0.00 0.00 3.85
1604 9606 1.348036 GCTCTCAGGGTTTACACAGGT 59.652 52.381 0.00 0.00 0.00 4.00
1605 9607 1.625818 AGCTCTCAGGGTTTACACAGG 59.374 52.381 0.00 0.00 0.00 4.00
1606 9608 2.300152 TCAGCTCTCAGGGTTTACACAG 59.700 50.000 0.00 0.00 0.00 3.66
1608 9610 3.618690 ATCAGCTCTCAGGGTTTACAC 57.381 47.619 0.00 0.00 0.00 2.90
1610 9612 4.579869 TGAAATCAGCTCTCAGGGTTTAC 58.420 43.478 0.00 0.00 0.00 2.01
1611 9613 4.908601 TGAAATCAGCTCTCAGGGTTTA 57.091 40.909 0.00 0.00 0.00 2.01
1612 9614 3.795688 TGAAATCAGCTCTCAGGGTTT 57.204 42.857 0.00 0.00 0.00 3.27
1614 9616 2.683152 GCATGAAATCAGCTCTCAGGGT 60.683 50.000 0.00 0.00 0.00 4.34
1615 9617 1.948145 GCATGAAATCAGCTCTCAGGG 59.052 52.381 0.00 0.00 0.00 4.45
1616 9618 2.640184 TGCATGAAATCAGCTCTCAGG 58.360 47.619 0.00 0.00 0.00 3.86
1617 9619 3.549019 GCATGCATGAAATCAGCTCTCAG 60.549 47.826 30.64 0.00 0.00 3.35
1618 9620 2.357952 GCATGCATGAAATCAGCTCTCA 59.642 45.455 30.64 0.00 0.00 3.27
1619 9621 2.357952 TGCATGCATGAAATCAGCTCTC 59.642 45.455 30.64 8.14 0.00 3.20
1620 9622 2.099263 GTGCATGCATGAAATCAGCTCT 59.901 45.455 30.64 0.00 0.00 4.09
1621 9623 2.460918 GTGCATGCATGAAATCAGCTC 58.539 47.619 30.64 9.82 0.00 4.09
1622 9624 1.202256 CGTGCATGCATGAAATCAGCT 60.202 47.619 31.95 0.00 35.09 4.24
1623 9625 1.197055 CGTGCATGCATGAAATCAGC 58.803 50.000 31.95 13.27 35.09 4.26
1624 9626 1.402613 TCCGTGCATGCATGAAATCAG 59.597 47.619 35.91 20.37 35.09 2.90
1625 9627 1.132834 GTCCGTGCATGCATGAAATCA 59.867 47.619 35.91 15.32 35.09 2.57
1626 9628 1.132834 TGTCCGTGCATGCATGAAATC 59.867 47.619 35.91 22.67 35.09 2.17
1627 9629 1.175654 TGTCCGTGCATGCATGAAAT 58.824 45.000 35.91 0.00 35.09 2.17
1628 9630 1.175654 ATGTCCGTGCATGCATGAAA 58.824 45.000 35.91 24.29 35.09 2.69
1629 9631 1.135344 CAATGTCCGTGCATGCATGAA 60.135 47.619 35.91 18.73 35.09 2.57
1641 9643 1.299541 GGTGTATCTGGCAATGTCCG 58.700 55.000 0.00 0.00 0.00 4.79
1648 9650 2.779755 ACAATTCGGTGTATCTGGCA 57.220 45.000 0.00 0.00 0.00 4.92
1663 9669 4.386652 GCAATTCATTCGAGCACAAACAAT 59.613 37.500 0.00 0.00 0.00 2.71
1758 9768 4.201950 ACAAGGTACACGCTAGTATTACGG 60.202 45.833 0.00 0.00 0.00 4.02
1907 9933 4.923516 AGCATGCACCTATTATCTGGAT 57.076 40.909 21.98 0.00 0.00 3.41
1908 9934 4.321974 CGTAGCATGCACCTATTATCTGGA 60.322 45.833 21.98 0.00 0.00 3.86
1909 9935 3.928992 CGTAGCATGCACCTATTATCTGG 59.071 47.826 21.98 0.00 0.00 3.86
1979 10012 2.417719 CGGAAAAGAGGTCTCCTTGTG 58.582 52.381 0.00 0.00 31.76 3.33
1991 10024 4.499019 GGACAAAAATGAGTGCGGAAAAGA 60.499 41.667 0.00 0.00 0.00 2.52
1995 10028 2.552315 GAGGACAAAAATGAGTGCGGAA 59.448 45.455 0.00 0.00 0.00 4.30
1999 10032 4.757149 AGTAGTGAGGACAAAAATGAGTGC 59.243 41.667 0.00 0.00 0.00 4.40
2020 10053 5.246656 TGAAAATGGATTGGAGCAAATCAGT 59.753 36.000 8.48 0.00 38.14 3.41
2043 10076 6.258287 TCAAATTGTTGTCCAAAGCTTCATTG 59.742 34.615 0.00 0.00 36.44 2.82
2067 10100 7.224297 TCTTAGTGATAATGGGCAAACCTATC 58.776 38.462 0.00 0.00 35.79 2.08
2072 10105 8.682710 TGTTATTCTTAGTGATAATGGGCAAAC 58.317 33.333 0.00 0.00 0.00 2.93
2108 10141 7.161404 GGTGTCATCTGCATACTGGATTATAA 58.839 38.462 0.00 0.00 0.00 0.98
2118 10152 8.783833 AGATAATAATGGTGTCATCTGCATAC 57.216 34.615 0.00 0.00 32.24 2.39
2125 10159 6.805271 GCATGCAAGATAATAATGGTGTCATC 59.195 38.462 14.21 0.00 32.24 2.92
2126 10160 6.265876 TGCATGCAAGATAATAATGGTGTCAT 59.734 34.615 20.30 0.00 34.56 3.06
2130 10164 6.452242 ACATGCATGCAAGATAATAATGGTG 58.548 36.000 28.20 17.11 0.00 4.17
2133 10167 6.071560 AGGGACATGCATGCAAGATAATAATG 60.072 38.462 28.20 18.49 0.00 1.90
2182 10216 6.978080 GTGTAAACCCGAAAATGCATCAATAT 59.022 34.615 0.00 0.00 0.00 1.28
2196 10230 1.616865 CTGAGACCTGTGTAAACCCGA 59.383 52.381 0.00 0.00 0.00 5.14
2197 10231 1.337823 CCTGAGACCTGTGTAAACCCG 60.338 57.143 0.00 0.00 0.00 5.28
2250 10284 6.512415 GCTTGATGTTATGAGCAGGTACATTC 60.512 42.308 0.00 0.00 35.29 2.67
2255 10289 4.486125 TGCTTGATGTTATGAGCAGGTA 57.514 40.909 0.00 0.00 39.97 3.08
2268 10302 5.814764 AAATAGCTGAGAGTTGCTTGATG 57.185 39.130 0.00 0.00 40.35 3.07
2272 10306 5.810095 ACCTAAAATAGCTGAGAGTTGCTT 58.190 37.500 0.00 0.00 40.35 3.91
2295 10329 2.303175 GGAAAACTACTGTGGGCACAA 58.697 47.619 0.00 0.00 41.33 3.33
2297 10331 1.202891 AGGGAAAACTACTGTGGGCAC 60.203 52.381 0.00 0.00 0.00 5.01
2298 10332 1.145571 AGGGAAAACTACTGTGGGCA 58.854 50.000 0.00 0.00 0.00 5.36
2302 10336 7.222161 AGGTAAGTAAAGGGAAAACTACTGTG 58.778 38.462 0.00 0.00 0.00 3.66
2304 10338 7.174426 CCAAGGTAAGTAAAGGGAAAACTACTG 59.826 40.741 0.00 0.00 0.00 2.74
2305 10339 7.072834 TCCAAGGTAAGTAAAGGGAAAACTACT 59.927 37.037 0.00 0.00 0.00 2.57
2309 10343 6.066690 AGTCCAAGGTAAGTAAAGGGAAAAC 58.933 40.000 0.00 0.00 0.00 2.43
2313 10347 4.287845 GGAAGTCCAAGGTAAGTAAAGGGA 59.712 45.833 0.00 0.00 35.64 4.20
2359 10393 8.837788 ATCCAATCCTTTTCAAAATCTTCAAC 57.162 30.769 0.00 0.00 0.00 3.18
2365 10399 9.183368 AGTCTAGATCCAATCCTTTTCAAAATC 57.817 33.333 0.00 0.00 0.00 2.17
2400 10445 2.019984 CCTAGGAAAGCATTGTGGAGC 58.980 52.381 1.05 0.00 0.00 4.70
2419 10464 4.899502 TCACAAGAATGAGTTTCTCTCCC 58.100 43.478 0.00 0.00 44.09 4.30
2443 10488 3.379452 AGGTAGGCTAGTGAAAGCAGAT 58.621 45.455 0.00 0.00 44.64 2.90
2447 10492 4.441773 GGAAGTAGGTAGGCTAGTGAAAGC 60.442 50.000 0.00 0.00 41.99 3.51
2448 10493 4.957327 AGGAAGTAGGTAGGCTAGTGAAAG 59.043 45.833 0.00 0.00 0.00 2.62
2469 10514 4.187694 GAGGTCTAAACTGCTCATGAAGG 58.812 47.826 0.00 0.00 0.00 3.46
2477 10522 1.972588 ATGGGGAGGTCTAAACTGCT 58.027 50.000 0.00 0.00 0.00 4.24
2491 10536 0.395724 GGCCAACAACTCCTATGGGG 60.396 60.000 0.00 0.00 33.45 4.96
2496 10541 9.875708 ATTTATTAATATGGCCAACAACTCCTA 57.124 29.630 10.96 0.00 0.00 2.94
2560 10605 7.853524 AGAATATAAGAGAAGTACGTCTGTCG 58.146 38.462 16.38 0.00 46.00 4.35
2562 10607 8.407064 CCAAGAATATAAGAGAAGTACGTCTGT 58.593 37.037 16.38 9.43 0.00 3.41
2563 10608 7.863375 CCCAAGAATATAAGAGAAGTACGTCTG 59.137 40.741 16.38 0.00 0.00 3.51
2581 10626 5.882000 GCAAGGCAAATTTTATCCCAAGAAT 59.118 36.000 0.00 0.00 0.00 2.40
2582 10627 5.012975 AGCAAGGCAAATTTTATCCCAAGAA 59.987 36.000 0.00 0.00 0.00 2.52
2583 10628 4.531732 AGCAAGGCAAATTTTATCCCAAGA 59.468 37.500 0.00 0.00 0.00 3.02
2585 10630 4.906747 AGCAAGGCAAATTTTATCCCAA 57.093 36.364 0.00 0.00 0.00 4.12
2586 10631 5.104982 CCTTAGCAAGGCAAATTTTATCCCA 60.105 40.000 2.58 0.00 42.78 4.37
2587 10632 5.359756 CCTTAGCAAGGCAAATTTTATCCC 58.640 41.667 2.58 0.00 42.78 3.85
2605 10650 2.616510 CCAAGTCCACCAGCTTCCTTAG 60.617 54.545 0.00 0.00 0.00 2.18
2606 10651 1.351017 CCAAGTCCACCAGCTTCCTTA 59.649 52.381 0.00 0.00 0.00 2.69
2607 10652 0.111253 CCAAGTCCACCAGCTTCCTT 59.889 55.000 0.00 0.00 0.00 3.36
2608 10653 0.768221 TCCAAGTCCACCAGCTTCCT 60.768 55.000 0.00 0.00 0.00 3.36
2609 10654 0.322008 CTCCAAGTCCACCAGCTTCC 60.322 60.000 0.00 0.00 0.00 3.46
2610 10655 0.398318 ACTCCAAGTCCACCAGCTTC 59.602 55.000 0.00 0.00 0.00 3.86
2611 10656 0.846693 AACTCCAAGTCCACCAGCTT 59.153 50.000 0.00 0.00 0.00 3.74
2612 10657 0.398318 GAACTCCAAGTCCACCAGCT 59.602 55.000 0.00 0.00 0.00 4.24
2613 10658 0.398318 AGAACTCCAAGTCCACCAGC 59.602 55.000 0.00 0.00 0.00 4.85
2614 10659 2.104792 TCAAGAACTCCAAGTCCACCAG 59.895 50.000 0.00 0.00 0.00 4.00
2615 10660 2.123589 TCAAGAACTCCAAGTCCACCA 58.876 47.619 0.00 0.00 0.00 4.17
2616 10661 2.930826 TCAAGAACTCCAAGTCCACC 57.069 50.000 0.00 0.00 0.00 4.61
2617 10662 3.499918 CACATCAAGAACTCCAAGTCCAC 59.500 47.826 0.00 0.00 0.00 4.02
2618 10663 3.743521 CACATCAAGAACTCCAAGTCCA 58.256 45.455 0.00 0.00 0.00 4.02
2619 10664 2.485814 GCACATCAAGAACTCCAAGTCC 59.514 50.000 0.00 0.00 0.00 3.85
2620 10665 3.141398 TGCACATCAAGAACTCCAAGTC 58.859 45.455 0.00 0.00 0.00 3.01
2621 10666 3.213206 TGCACATCAAGAACTCCAAGT 57.787 42.857 0.00 0.00 0.00 3.16
2622 10667 4.037208 AGTTTGCACATCAAGAACTCCAAG 59.963 41.667 0.00 0.00 35.84 3.61
2623 10668 3.953612 AGTTTGCACATCAAGAACTCCAA 59.046 39.130 0.00 0.00 35.84 3.53
2624 10669 3.554934 AGTTTGCACATCAAGAACTCCA 58.445 40.909 0.00 0.00 35.84 3.86
2625 10670 3.565482 TGAGTTTGCACATCAAGAACTCC 59.435 43.478 17.98 5.64 39.82 3.85
2626 10671 4.512944 TCTGAGTTTGCACATCAAGAACTC 59.487 41.667 15.20 15.20 40.46 3.01
2627 10672 4.454678 TCTGAGTTTGCACATCAAGAACT 58.545 39.130 0.00 0.00 35.84 3.01
2628 10673 4.818534 TCTGAGTTTGCACATCAAGAAC 57.181 40.909 0.00 0.00 35.84 3.01
2695 10740 1.538876 TCCACCCAAGGGAGGTCAG 60.539 63.158 19.34 0.00 44.76 3.51
2720 10765 5.706833 GGTAGAAGTATAGTAGGAGCTCCAC 59.293 48.000 33.90 26.57 38.89 4.02
2747 10792 2.420642 CAACAGGTGTGACATGAGGAG 58.579 52.381 0.00 0.00 33.56 3.69
2753 10798 1.494721 AGGAACCAACAGGTGTGACAT 59.505 47.619 0.00 0.00 35.32 3.06
2759 10804 1.133792 ACCAGAAGGAACCAACAGGTG 60.134 52.381 0.00 0.00 38.69 4.00
2803 10848 5.890419 AGGAAGAGATGGCTTTAAAATCAGG 59.110 40.000 2.15 0.00 0.00 3.86
2812 10857 1.954258 GCTGCAGGAAGAGATGGCTTT 60.954 52.381 17.12 0.00 0.00 3.51
2835 10881 1.285078 AGAACATAGTTCCCTTGCCCC 59.715 52.381 6.29 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.