Multiple sequence alignment - TraesCS7B01G225700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G225700 chr7B 100.000 3377 0 0 1 3377 426308638 426305262 0.000000e+00 6237.0
1 TraesCS7B01G225700 chr5B 83.134 2419 292 79 276 2642 55042425 55040071 0.000000e+00 2100.0
2 TraesCS7B01G225700 chr5B 78.393 560 63 29 2720 3278 55039566 55039064 9.100000e-81 311.0
3 TraesCS7B01G225700 chr7A 91.979 1359 80 11 258 1596 473011167 473009818 0.000000e+00 1879.0
4 TraesCS7B01G225700 chr7A 93.297 731 40 6 1991 2714 473003228 473002500 0.000000e+00 1070.0
5 TraesCS7B01G225700 chr7A 92.029 414 22 5 2722 3133 473002437 473002033 3.780000e-159 571.0
6 TraesCS7B01G225700 chr7A 86.998 423 37 14 1586 2006 473003650 473003244 8.540000e-126 460.0
7 TraesCS7B01G225700 chr7A 96.135 207 6 1 3074 3278 473002050 473001844 1.500000e-88 337.0
8 TraesCS7B01G225700 chr7A 92.308 52 4 0 57 108 46524619 46524568 1.300000e-09 75.0
9 TraesCS7B01G225700 chr7A 90.385 52 5 0 57 108 46476203 46476152 6.050000e-08 69.4
10 TraesCS7B01G225700 chr7D 90.502 1316 77 19 1441 2714 411893138 411891829 0.000000e+00 1694.0
11 TraesCS7B01G225700 chr7D 90.310 1259 92 17 197 1435 411894785 411893537 0.000000e+00 1622.0
12 TraesCS7B01G225700 chr7D 91.136 361 17 4 2918 3278 411891632 411891287 3.050000e-130 475.0
13 TraesCS7B01G225700 chr7D 93.662 142 9 0 2720 2861 411891769 411891628 2.640000e-51 213.0
14 TraesCS7B01G225700 chr7D 83.851 161 12 1 1 161 411924421 411924275 1.260000e-29 141.0
15 TraesCS7B01G225700 chr5D 85.178 985 118 18 276 1240 51923257 51922281 0.000000e+00 985.0
16 TraesCS7B01G225700 chr5D 83.380 1083 135 29 1599 2643 51922250 51921175 0.000000e+00 961.0
17 TraesCS7B01G225700 chr5D 79.159 571 70 24 2720 3278 51920995 51920462 1.930000e-92 350.0
18 TraesCS7B01G225700 chr6B 92.308 52 4 0 57 108 356961091 356961142 1.300000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G225700 chr7B 426305262 426308638 3376 True 6237.000000 6237 100.000000 1 3377 1 chr7B.!!$R1 3376
1 TraesCS7B01G225700 chr5B 55039064 55042425 3361 True 1205.500000 2100 80.763500 276 3278 2 chr5B.!!$R1 3002
2 TraesCS7B01G225700 chr7A 473009818 473011167 1349 True 1879.000000 1879 91.979000 258 1596 1 chr7A.!!$R3 1338
3 TraesCS7B01G225700 chr7A 473001844 473003650 1806 True 609.500000 1070 92.114750 1586 3278 4 chr7A.!!$R4 1692
4 TraesCS7B01G225700 chr7D 411891287 411894785 3498 True 1001.000000 1694 91.402500 197 3278 4 chr7D.!!$R2 3081
5 TraesCS7B01G225700 chr5D 51920462 51923257 2795 True 765.333333 985 82.572333 276 3278 3 chr5D.!!$R1 3002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.103937 GCCTTCATCTCTCACCTCCG 59.896 60.0 0.0 0.0 0.00 4.63 F
173 174 0.187361 CCCAACAGAAGAACCCCCAA 59.813 55.0 0.0 0.0 0.00 4.12 F
1846 2343 0.251121 TACGTCTGGTAACACGGGGA 60.251 55.0 0.0 0.0 46.17 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 2026 0.182061 ACTGGAGTATGCATGCAGGG 59.818 55.000 26.69 12.05 40.14 4.45 R
2127 2667 1.202076 GCTGGCAACGAGATAGTTTGC 60.202 52.381 0.00 0.00 42.51 3.68 R
2827 3813 0.902048 TCTGGGCAGTCAGGTCTGAG 60.902 60.000 0.28 0.00 40.75 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.803279 AAATAGAAATCCATTCCTACGAACC 57.197 36.000 0.00 0.00 38.94 3.62
42 43 4.837093 AGAAATCCATTCCTACGAACCA 57.163 40.909 0.00 0.00 38.94 3.67
43 44 5.174037 AGAAATCCATTCCTACGAACCAA 57.826 39.130 0.00 0.00 38.94 3.67
44 45 5.566469 AGAAATCCATTCCTACGAACCAAA 58.434 37.500 0.00 0.00 38.94 3.28
45 46 5.414765 AGAAATCCATTCCTACGAACCAAAC 59.585 40.000 0.00 0.00 38.94 2.93
46 47 2.690786 TCCATTCCTACGAACCAAACG 58.309 47.619 0.00 0.00 0.00 3.60
47 48 2.299582 TCCATTCCTACGAACCAAACGA 59.700 45.455 0.00 0.00 34.70 3.85
48 49 3.055675 TCCATTCCTACGAACCAAACGAT 60.056 43.478 0.00 0.00 34.70 3.73
49 50 3.687698 CCATTCCTACGAACCAAACGATT 59.312 43.478 0.00 0.00 34.70 3.34
50 51 4.155280 CCATTCCTACGAACCAAACGATTT 59.845 41.667 0.00 0.00 34.70 2.17
51 52 5.335348 CCATTCCTACGAACCAAACGATTTT 60.335 40.000 0.00 0.00 34.70 1.82
52 53 5.754543 TTCCTACGAACCAAACGATTTTT 57.245 34.783 0.00 0.00 34.70 1.94
53 54 5.098218 TCCTACGAACCAAACGATTTTTG 57.902 39.130 0.00 0.00 34.70 2.44
54 55 4.815308 TCCTACGAACCAAACGATTTTTGA 59.185 37.500 0.00 0.00 34.70 2.69
55 56 5.296283 TCCTACGAACCAAACGATTTTTGAA 59.704 36.000 0.00 0.00 34.70 2.69
56 57 5.623673 CCTACGAACCAAACGATTTTTGAAG 59.376 40.000 0.00 0.00 34.70 3.02
57 58 4.356289 ACGAACCAAACGATTTTTGAAGG 58.644 39.130 0.00 0.00 34.70 3.46
58 59 3.181575 CGAACCAAACGATTTTTGAAGGC 59.818 43.478 0.00 0.00 0.00 4.35
59 60 4.368315 GAACCAAACGATTTTTGAAGGCT 58.632 39.130 0.00 0.00 0.00 4.58
60 61 4.400529 ACCAAACGATTTTTGAAGGCTT 57.599 36.364 0.00 0.00 0.00 4.35
61 62 4.368315 ACCAAACGATTTTTGAAGGCTTC 58.632 39.130 20.27 20.27 0.00 3.86
62 63 4.142049 ACCAAACGATTTTTGAAGGCTTCA 60.142 37.500 25.38 25.38 38.04 3.02
130 131 9.920946 ACAATAAAATATTTCTAGAGGCCTTCA 57.079 29.630 6.77 0.00 0.00 3.02
134 135 8.916628 AAAATATTTCTAGAGGCCTTCATCTC 57.083 34.615 6.77 0.00 0.00 2.75
135 136 7.870426 AATATTTCTAGAGGCCTTCATCTCT 57.130 36.000 6.77 0.00 42.37 3.10
136 137 5.806654 ATTTCTAGAGGCCTTCATCTCTC 57.193 43.478 6.77 0.00 40.45 3.20
137 138 3.961484 TCTAGAGGCCTTCATCTCTCA 57.039 47.619 6.77 0.00 40.45 3.27
138 139 3.561143 TCTAGAGGCCTTCATCTCTCAC 58.439 50.000 6.77 0.00 40.45 3.51
139 140 1.494960 AGAGGCCTTCATCTCTCACC 58.505 55.000 6.77 0.00 35.65 4.02
140 141 1.008206 AGAGGCCTTCATCTCTCACCT 59.992 52.381 6.77 0.00 35.65 4.00
141 142 1.412343 GAGGCCTTCATCTCTCACCTC 59.588 57.143 6.77 0.00 35.83 3.85
142 143 0.467804 GGCCTTCATCTCTCACCTCC 59.532 60.000 0.00 0.00 0.00 4.30
143 144 0.103937 GCCTTCATCTCTCACCTCCG 59.896 60.000 0.00 0.00 0.00 4.63
144 145 1.479709 CCTTCATCTCTCACCTCCGT 58.520 55.000 0.00 0.00 0.00 4.69
145 146 1.407258 CCTTCATCTCTCACCTCCGTC 59.593 57.143 0.00 0.00 0.00 4.79
146 147 1.064803 CTTCATCTCTCACCTCCGTCG 59.935 57.143 0.00 0.00 0.00 5.12
147 148 0.748367 TCATCTCTCACCTCCGTCGG 60.748 60.000 4.39 4.39 0.00 4.79
148 149 2.122167 ATCTCTCACCTCCGTCGGC 61.122 63.158 6.34 0.00 0.00 5.54
149 150 3.827898 CTCTCACCTCCGTCGGCC 61.828 72.222 6.34 0.00 0.00 6.13
164 165 2.677875 GCCCAGGCCCAACAGAAG 60.678 66.667 0.00 0.00 34.56 2.85
165 166 3.170362 CCCAGGCCCAACAGAAGA 58.830 61.111 0.00 0.00 0.00 2.87
166 167 1.460255 CCCAGGCCCAACAGAAGAA 59.540 57.895 0.00 0.00 0.00 2.52
167 168 0.895559 CCCAGGCCCAACAGAAGAAC 60.896 60.000 0.00 0.00 0.00 3.01
168 169 0.895559 CCAGGCCCAACAGAAGAACC 60.896 60.000 0.00 0.00 0.00 3.62
169 170 0.895559 CAGGCCCAACAGAAGAACCC 60.896 60.000 0.00 0.00 0.00 4.11
170 171 1.606601 GGCCCAACAGAAGAACCCC 60.607 63.158 0.00 0.00 0.00 4.95
171 172 1.606601 GCCCAACAGAAGAACCCCC 60.607 63.158 0.00 0.00 0.00 5.40
172 173 1.850549 CCCAACAGAAGAACCCCCA 59.149 57.895 0.00 0.00 0.00 4.96
173 174 0.187361 CCCAACAGAAGAACCCCCAA 59.813 55.000 0.00 0.00 0.00 4.12
174 175 1.203174 CCCAACAGAAGAACCCCCAAT 60.203 52.381 0.00 0.00 0.00 3.16
175 176 2.608623 CCAACAGAAGAACCCCCAATT 58.391 47.619 0.00 0.00 0.00 2.32
176 177 2.562738 CCAACAGAAGAACCCCCAATTC 59.437 50.000 0.00 0.00 0.00 2.17
177 178 2.562738 CAACAGAAGAACCCCCAATTCC 59.437 50.000 0.00 0.00 0.00 3.01
178 179 2.073776 ACAGAAGAACCCCCAATTCCT 58.926 47.619 0.00 0.00 0.00 3.36
179 180 2.041755 ACAGAAGAACCCCCAATTCCTC 59.958 50.000 0.00 0.00 0.00 3.71
180 181 2.310052 CAGAAGAACCCCCAATTCCTCT 59.690 50.000 0.00 0.00 28.77 3.69
181 182 2.996742 AGAAGAACCCCCAATTCCTCTT 59.003 45.455 0.00 0.00 0.00 2.85
182 183 3.402708 AGAAGAACCCCCAATTCCTCTTT 59.597 43.478 0.00 0.00 0.00 2.52
183 184 3.175438 AGAACCCCCAATTCCTCTTTG 57.825 47.619 0.00 0.00 0.00 2.77
184 185 1.550524 GAACCCCCAATTCCTCTTTGC 59.449 52.381 0.00 0.00 0.00 3.68
185 186 0.252239 ACCCCCAATTCCTCTTTGCC 60.252 55.000 0.00 0.00 0.00 4.52
186 187 0.252193 CCCCCAATTCCTCTTTGCCA 60.252 55.000 0.00 0.00 0.00 4.92
187 188 1.188863 CCCCAATTCCTCTTTGCCAG 58.811 55.000 0.00 0.00 0.00 4.85
188 189 0.533951 CCCAATTCCTCTTTGCCAGC 59.466 55.000 0.00 0.00 0.00 4.85
189 190 0.533951 CCAATTCCTCTTTGCCAGCC 59.466 55.000 0.00 0.00 0.00 4.85
190 191 0.533951 CAATTCCTCTTTGCCAGCCC 59.466 55.000 0.00 0.00 0.00 5.19
191 192 0.411058 AATTCCTCTTTGCCAGCCCT 59.589 50.000 0.00 0.00 0.00 5.19
192 193 1.298953 ATTCCTCTTTGCCAGCCCTA 58.701 50.000 0.00 0.00 0.00 3.53
193 194 1.072266 TTCCTCTTTGCCAGCCCTAA 58.928 50.000 0.00 0.00 0.00 2.69
194 195 1.072266 TCCTCTTTGCCAGCCCTAAA 58.928 50.000 0.00 0.00 0.00 1.85
195 196 1.427368 TCCTCTTTGCCAGCCCTAAAA 59.573 47.619 0.00 0.00 0.00 1.52
196 197 2.158385 TCCTCTTTGCCAGCCCTAAAAA 60.158 45.455 0.00 0.00 0.00 1.94
249 250 4.758251 CATGTCTCCGTGCGCCCA 62.758 66.667 4.18 0.00 0.00 5.36
250 251 4.015406 ATGTCTCCGTGCGCCCAA 62.015 61.111 4.18 0.00 0.00 4.12
251 252 4.980805 TGTCTCCGTGCGCCCAAC 62.981 66.667 4.18 0.00 0.00 3.77
522 539 4.560856 CGAGCTCTCCTTCCGCGG 62.561 72.222 22.12 22.12 0.00 6.46
717 742 4.004982 TGCGGGAACTTTAAAGATGGTAC 58.995 43.478 21.92 7.47 0.00 3.34
775 800 0.725686 CGATCAAGCTGGAAGTGCAG 59.274 55.000 0.00 0.00 35.30 4.41
927 955 2.838225 CGGCTGGGGTCTCGGTAT 60.838 66.667 0.00 0.00 0.00 2.73
1090 1119 1.603172 CGCCGATGGTGGAGAATCTAC 60.603 57.143 0.00 0.00 46.97 2.59
1122 1153 8.301730 ACATCTATTGCAACTTTCAAAATGTG 57.698 30.769 0.00 0.00 0.00 3.21
1141 1172 2.189499 GGGATTGATGTCTGGCGCC 61.189 63.158 22.73 22.73 0.00 6.53
1198 1229 6.202188 CGTCAATACCCTATGGTTGTTCATAC 59.798 42.308 0.00 0.00 44.75 2.39
1210 1244 1.277842 TGTTCATACATGCTCCGGTGT 59.722 47.619 0.00 0.00 0.00 4.16
1240 1280 3.758554 GTCCTGCTTTATTTTCCTCTGCA 59.241 43.478 0.00 0.00 0.00 4.41
1241 1281 4.012374 TCCTGCTTTATTTTCCTCTGCAG 58.988 43.478 7.63 7.63 43.92 4.41
1242 1282 3.760684 CCTGCTTTATTTTCCTCTGCAGT 59.239 43.478 14.67 0.00 43.12 4.40
1243 1283 4.142513 CCTGCTTTATTTTCCTCTGCAGTC 60.143 45.833 14.67 0.00 43.12 3.51
1244 1284 4.655963 TGCTTTATTTTCCTCTGCAGTCT 58.344 39.130 14.67 0.00 0.00 3.24
1245 1285 4.456911 TGCTTTATTTTCCTCTGCAGTCTG 59.543 41.667 14.67 5.43 0.00 3.51
1246 1286 4.673841 GCTTTATTTTCCTCTGCAGTCTGC 60.674 45.833 18.32 18.32 45.29 4.26
1260 1307 4.142622 TGCAGTCTGCTCCAAAATTATTCG 60.143 41.667 24.76 0.00 45.31 3.34
1287 1335 5.068234 AGAATGTTCAATTGGTGCATGAG 57.932 39.130 5.42 0.00 0.00 2.90
1326 1374 2.502142 AGCTGATGAAACCATGCAGA 57.498 45.000 0.00 0.00 0.00 4.26
1374 1424 6.756542 GGTATTGGACAAAACTTAATCCATGC 59.243 38.462 0.00 0.00 40.87 4.06
1404 1454 8.582657 TGCCCAACTAAAATAAATTACTGCTA 57.417 30.769 0.00 0.00 0.00 3.49
1435 1485 1.618343 GGCCACCAACACTGCTATTTT 59.382 47.619 0.00 0.00 0.00 1.82
1436 1486 2.823154 GGCCACCAACACTGCTATTTTA 59.177 45.455 0.00 0.00 0.00 1.52
1437 1487 3.257127 GGCCACCAACACTGCTATTTTAA 59.743 43.478 0.00 0.00 0.00 1.52
1443 1886 6.636850 CACCAACACTGCTATTTTAAGTTGAC 59.363 38.462 0.00 0.00 37.62 3.18
1551 2011 2.638330 AATGCATGCATCGCCCTTGC 62.638 55.000 32.25 8.60 40.55 4.01
1555 2015 4.653893 TGCATCGCCCTTGCATAA 57.346 50.000 0.00 0.00 44.73 1.90
1564 2026 2.293170 GCCCTTGCATAAGAGGTCTTC 58.707 52.381 1.58 0.00 35.92 2.87
1576 2038 1.141657 GAGGTCTTCCCTGCATGCATA 59.858 52.381 22.97 7.16 46.51 3.14
1616 2091 3.840890 TCGTGGTATGTTGCCAAATTC 57.159 42.857 0.00 0.00 37.81 2.17
1652 2130 8.712228 ACTGTTCTTTTTCCTATTTCCTTCAT 57.288 30.769 0.00 0.00 0.00 2.57
1659 2137 8.421249 TTTTTCCTATTTCCTTCATGACATGT 57.579 30.769 14.98 0.00 0.00 3.21
1707 2185 6.265196 ACCAGATGCAATTCTTGTTCTTGTAA 59.735 34.615 0.00 0.00 0.00 2.41
1708 2186 6.805271 CCAGATGCAATTCTTGTTCTTGTAAG 59.195 38.462 0.00 0.00 0.00 2.34
1709 2187 7.365741 CAGATGCAATTCTTGTTCTTGTAAGT 58.634 34.615 0.00 0.00 0.00 2.24
1710 2188 8.506437 CAGATGCAATTCTTGTTCTTGTAAGTA 58.494 33.333 0.00 0.00 0.00 2.24
1711 2189 9.236006 AGATGCAATTCTTGTTCTTGTAAGTAT 57.764 29.630 0.00 0.00 0.00 2.12
1712 2190 9.282247 GATGCAATTCTTGTTCTTGTAAGTATG 57.718 33.333 0.00 0.00 0.00 2.39
1846 2343 0.251121 TACGTCTGGTAACACGGGGA 60.251 55.000 0.00 0.00 46.17 4.81
1890 2387 4.842531 TGAATCTACTTGGGATCTGCAA 57.157 40.909 0.00 0.00 0.00 4.08
1903 2400 5.650266 TGGGATCTGCAACGTAATACAAAAT 59.350 36.000 0.00 0.00 0.00 1.82
1913 2410 8.231837 GCAACGTAATACAAAATCTTAAGGTGA 58.768 33.333 1.85 0.00 0.00 4.02
2127 2667 1.963515 CAACCCCAAAACTGGAGAAGG 59.036 52.381 0.00 0.00 0.00 3.46
2203 2743 2.911819 TGGCGACGAAATTGATTTCC 57.088 45.000 0.00 0.00 42.34 3.13
2408 2948 6.544928 TGCTTCTGGTTGTAATCAGAGATA 57.455 37.500 7.56 0.00 40.55 1.98
2409 2949 6.341316 TGCTTCTGGTTGTAATCAGAGATAC 58.659 40.000 7.56 1.24 40.55 2.24
2410 2950 5.755861 GCTTCTGGTTGTAATCAGAGATACC 59.244 44.000 7.56 0.00 40.55 2.73
2439 2986 1.070134 TGTCTAAGCTTGAACGCCTGT 59.930 47.619 9.86 0.00 0.00 4.00
2445 2992 0.941542 GCTTGAACGCCTGTTGTGTA 59.058 50.000 0.00 0.00 38.78 2.90
2453 3000 5.406175 TGAACGCCTGTTGTGTATTACTTAC 59.594 40.000 0.00 0.00 38.78 2.34
2499 3047 9.300681 TGAAGATTCCAGAACAGTTCAATTAAT 57.699 29.630 15.85 8.97 0.00 1.40
2613 3162 6.018433 ACCTGCATATTCCTTAGGTTGAAT 57.982 37.500 0.00 0.00 38.56 2.57
2683 3383 6.001460 TGGTGGTAGAGGTATTGTCTTTTTG 58.999 40.000 0.00 0.00 0.00 2.44
2714 3417 4.402793 GCAGAGGTATAGTCAGGTGAAGAA 59.597 45.833 0.00 0.00 0.00 2.52
2715 3418 5.451242 GCAGAGGTATAGTCAGGTGAAGAAG 60.451 48.000 0.00 0.00 0.00 2.85
2716 3419 4.647399 AGAGGTATAGTCAGGTGAAGAAGC 59.353 45.833 0.00 0.00 0.00 3.86
2717 3420 3.381908 AGGTATAGTCAGGTGAAGAAGCG 59.618 47.826 0.00 0.00 0.00 4.68
2761 3746 4.102838 ACTTCCAGGACTACTCTATCGCTA 59.897 45.833 0.00 0.00 0.00 4.26
2772 3757 8.630054 ACTACTCTATCGCTAAAGAAGATCAT 57.370 34.615 0.00 0.00 0.00 2.45
2827 3813 5.304686 TCCCACCATGTTATCACTTATCC 57.695 43.478 0.00 0.00 0.00 2.59
2837 3823 6.194967 TGTTATCACTTATCCTCAGACCTGA 58.805 40.000 0.00 0.00 38.06 3.86
2869 3857 9.525409 CAGAAAGAAATGAAGTTCTTGTGATTT 57.475 29.630 6.52 1.38 45.09 2.17
2962 3957 2.180276 GTAGTCCTGAGCTTCCCTTGA 58.820 52.381 0.00 0.00 0.00 3.02
3032 4027 2.464459 GCACTGCACTGGCCGATAC 61.464 63.158 0.00 0.00 40.13 2.24
3200 4256 1.207570 TGCATGTTCATGGAATTGGGC 59.792 47.619 13.55 0.00 0.00 5.36
3202 4258 1.113788 ATGTTCATGGAATTGGGCGG 58.886 50.000 0.00 0.00 0.00 6.13
3236 4292 5.192522 AGAGAAGAGCCAATTCCAATTCCTA 59.807 40.000 0.00 0.00 0.00 2.94
3286 4342 8.231304 TGTAATTCTTAAAGAGTACCGTTTCG 57.769 34.615 0.00 0.00 0.00 3.46
3287 4343 8.081633 TGTAATTCTTAAAGAGTACCGTTTCGA 58.918 33.333 0.00 0.00 0.00 3.71
3288 4344 7.951530 AATTCTTAAAGAGTACCGTTTCGAA 57.048 32.000 0.00 0.00 0.00 3.71
3289 4345 7.951530 ATTCTTAAAGAGTACCGTTTCGAAA 57.048 32.000 6.47 6.47 0.00 3.46
3290 4346 7.769272 TTCTTAAAGAGTACCGTTTCGAAAA 57.231 32.000 13.10 0.00 0.00 2.29
3291 4347 7.769272 TCTTAAAGAGTACCGTTTCGAAAAA 57.231 32.000 13.10 0.00 0.00 1.94
3356 4412 8.684386 TGTTTGAAAATGTATTCTCCACTACA 57.316 30.769 0.00 0.00 32.75 2.74
3357 4413 8.783093 TGTTTGAAAATGTATTCTCCACTACAG 58.217 33.333 0.00 0.00 31.79 2.74
3358 4414 8.784043 GTTTGAAAATGTATTCTCCACTACAGT 58.216 33.333 0.00 0.00 31.79 3.55
3359 4415 7.905604 TGAAAATGTATTCTCCACTACAGTG 57.094 36.000 2.23 2.23 45.23 3.66
3360 4416 7.450074 TGAAAATGTATTCTCCACTACAGTGT 58.550 34.615 0.00 0.00 44.21 3.55
3361 4417 7.936847 TGAAAATGTATTCTCCACTACAGTGTT 59.063 33.333 0.00 0.00 44.21 3.32
3362 4418 8.691661 AAAATGTATTCTCCACTACAGTGTTT 57.308 30.769 0.00 0.00 44.21 2.83
3363 4419 7.672983 AATGTATTCTCCACTACAGTGTTTG 57.327 36.000 0.00 0.00 44.21 2.93
3364 4420 6.169557 TGTATTCTCCACTACAGTGTTTGT 57.830 37.500 0.00 0.00 44.21 2.83
3365 4421 7.292713 TGTATTCTCCACTACAGTGTTTGTA 57.707 36.000 0.00 0.00 44.21 2.41
3366 4422 7.903145 TGTATTCTCCACTACAGTGTTTGTAT 58.097 34.615 0.00 0.00 44.21 2.29
3367 4423 8.372459 TGTATTCTCCACTACAGTGTTTGTATT 58.628 33.333 0.00 0.00 44.21 1.89
3368 4424 9.865321 GTATTCTCCACTACAGTGTTTGTATTA 57.135 33.333 0.00 0.00 44.21 0.98
3370 4426 9.959721 ATTCTCCACTACAGTGTTTGTATTATT 57.040 29.630 0.00 0.00 44.21 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.683615 GGTTCGTAGGAATGGATTTCTATTTTT 58.316 33.333 0.50 0.00 30.96 1.94
16 17 7.832187 TGGTTCGTAGGAATGGATTTCTATTTT 59.168 33.333 0.50 0.00 30.96 1.82
17 18 7.343357 TGGTTCGTAGGAATGGATTTCTATTT 58.657 34.615 0.50 0.00 30.96 1.40
18 19 6.895782 TGGTTCGTAGGAATGGATTTCTATT 58.104 36.000 0.50 0.00 30.96 1.73
19 20 6.494666 TGGTTCGTAGGAATGGATTTCTAT 57.505 37.500 0.50 0.00 30.96 1.98
20 21 5.943349 TGGTTCGTAGGAATGGATTTCTA 57.057 39.130 0.50 0.00 34.05 2.10
21 22 4.837093 TGGTTCGTAGGAATGGATTTCT 57.163 40.909 0.50 0.00 34.05 2.52
22 23 5.637809 GTTTGGTTCGTAGGAATGGATTTC 58.362 41.667 0.50 0.00 34.05 2.17
23 24 4.155280 CGTTTGGTTCGTAGGAATGGATTT 59.845 41.667 0.50 0.00 34.05 2.17
24 25 3.687698 CGTTTGGTTCGTAGGAATGGATT 59.312 43.478 0.50 0.00 34.05 3.01
25 26 3.055675 TCGTTTGGTTCGTAGGAATGGAT 60.056 43.478 0.50 0.00 34.05 3.41
26 27 2.299582 TCGTTTGGTTCGTAGGAATGGA 59.700 45.455 0.50 0.00 34.05 3.41
27 28 2.690786 TCGTTTGGTTCGTAGGAATGG 58.309 47.619 0.50 0.00 34.05 3.16
28 29 4.939509 AATCGTTTGGTTCGTAGGAATG 57.060 40.909 0.50 0.00 34.05 2.67
29 30 5.952526 AAAATCGTTTGGTTCGTAGGAAT 57.047 34.783 0.50 0.00 34.05 3.01
30 31 5.296283 TCAAAAATCGTTTGGTTCGTAGGAA 59.704 36.000 0.00 0.00 0.00 3.36
31 32 4.815308 TCAAAAATCGTTTGGTTCGTAGGA 59.185 37.500 0.00 0.00 0.00 2.94
32 33 5.098218 TCAAAAATCGTTTGGTTCGTAGG 57.902 39.130 0.00 0.00 0.00 3.18
33 34 5.623673 CCTTCAAAAATCGTTTGGTTCGTAG 59.376 40.000 0.00 0.00 0.00 3.51
34 35 5.512473 CCTTCAAAAATCGTTTGGTTCGTA 58.488 37.500 0.00 0.00 0.00 3.43
35 36 4.356289 CCTTCAAAAATCGTTTGGTTCGT 58.644 39.130 0.00 0.00 0.00 3.85
36 37 3.181575 GCCTTCAAAAATCGTTTGGTTCG 59.818 43.478 0.00 0.00 0.00 3.95
37 38 4.368315 AGCCTTCAAAAATCGTTTGGTTC 58.632 39.130 0.00 0.00 0.00 3.62
38 39 4.400529 AGCCTTCAAAAATCGTTTGGTT 57.599 36.364 0.00 0.00 0.00 3.67
39 40 4.142049 TGAAGCCTTCAAAAATCGTTTGGT 60.142 37.500 4.27 0.00 36.59 3.67
40 41 4.367450 TGAAGCCTTCAAAAATCGTTTGG 58.633 39.130 4.27 0.00 36.59 3.28
41 42 5.964887 TTGAAGCCTTCAAAAATCGTTTG 57.035 34.783 17.22 0.00 45.94 2.93
52 53 6.888105 AGGAAAAATTCTTTTGAAGCCTTCA 58.112 32.000 2.24 2.24 42.30 3.02
53 54 7.792374 AAGGAAAAATTCTTTTGAAGCCTTC 57.208 32.000 0.00 0.00 42.30 3.46
104 105 9.920946 TGAAGGCCTCTAGAAATATTTTATTGT 57.079 29.630 5.23 0.00 0.00 2.71
109 110 8.722422 AGAGATGAAGGCCTCTAGAAATATTTT 58.278 33.333 5.23 0.00 37.94 1.82
110 111 8.273923 AGAGATGAAGGCCTCTAGAAATATTT 57.726 34.615 5.23 0.00 37.94 1.40
111 112 7.512058 TGAGAGATGAAGGCCTCTAGAAATATT 59.488 37.037 5.23 0.00 39.64 1.28
112 113 7.015680 TGAGAGATGAAGGCCTCTAGAAATAT 58.984 38.462 5.23 0.00 39.64 1.28
113 114 6.266558 GTGAGAGATGAAGGCCTCTAGAAATA 59.733 42.308 5.23 0.00 39.64 1.40
114 115 5.070313 GTGAGAGATGAAGGCCTCTAGAAAT 59.930 44.000 5.23 0.00 39.64 2.17
115 116 4.404073 GTGAGAGATGAAGGCCTCTAGAAA 59.596 45.833 5.23 0.00 39.64 2.52
116 117 3.957497 GTGAGAGATGAAGGCCTCTAGAA 59.043 47.826 5.23 0.00 39.64 2.10
117 118 3.561143 GTGAGAGATGAAGGCCTCTAGA 58.439 50.000 5.23 0.00 39.64 2.43
118 119 2.627699 GGTGAGAGATGAAGGCCTCTAG 59.372 54.545 5.23 0.00 39.64 2.43
119 120 2.246067 AGGTGAGAGATGAAGGCCTCTA 59.754 50.000 5.23 0.00 39.64 2.43
120 121 1.008206 AGGTGAGAGATGAAGGCCTCT 59.992 52.381 5.23 0.00 42.01 3.69
121 122 1.412343 GAGGTGAGAGATGAAGGCCTC 59.588 57.143 5.23 0.00 35.00 4.70
122 123 1.494960 GAGGTGAGAGATGAAGGCCT 58.505 55.000 0.00 0.00 0.00 5.19
123 124 0.467804 GGAGGTGAGAGATGAAGGCC 59.532 60.000 0.00 0.00 0.00 5.19
124 125 0.103937 CGGAGGTGAGAGATGAAGGC 59.896 60.000 0.00 0.00 0.00 4.35
125 126 1.407258 GACGGAGGTGAGAGATGAAGG 59.593 57.143 0.00 0.00 0.00 3.46
126 127 1.064803 CGACGGAGGTGAGAGATGAAG 59.935 57.143 0.00 0.00 0.00 3.02
127 128 1.095600 CGACGGAGGTGAGAGATGAA 58.904 55.000 0.00 0.00 0.00 2.57
128 129 0.748367 CCGACGGAGGTGAGAGATGA 60.748 60.000 8.64 0.00 0.00 2.92
129 130 1.730487 CCGACGGAGGTGAGAGATG 59.270 63.158 8.64 0.00 0.00 2.90
130 131 2.122167 GCCGACGGAGGTGAGAGAT 61.122 63.158 20.50 0.00 0.00 2.75
131 132 2.750637 GCCGACGGAGGTGAGAGA 60.751 66.667 20.50 0.00 0.00 3.10
132 133 3.827898 GGCCGACGGAGGTGAGAG 61.828 72.222 20.50 0.00 0.00 3.20
147 148 2.677875 CTTCTGTTGGGCCTGGGC 60.678 66.667 12.58 12.58 41.06 5.36
148 149 0.895559 GTTCTTCTGTTGGGCCTGGG 60.896 60.000 4.53 0.00 0.00 4.45
149 150 0.895559 GGTTCTTCTGTTGGGCCTGG 60.896 60.000 4.53 0.00 0.00 4.45
150 151 0.895559 GGGTTCTTCTGTTGGGCCTG 60.896 60.000 4.53 0.00 0.00 4.85
151 152 1.460699 GGGTTCTTCTGTTGGGCCT 59.539 57.895 4.53 0.00 0.00 5.19
152 153 1.606601 GGGGTTCTTCTGTTGGGCC 60.607 63.158 0.00 0.00 0.00 5.80
153 154 1.606601 GGGGGTTCTTCTGTTGGGC 60.607 63.158 0.00 0.00 0.00 5.36
154 155 0.187361 TTGGGGGTTCTTCTGTTGGG 59.813 55.000 0.00 0.00 0.00 4.12
155 156 2.309136 ATTGGGGGTTCTTCTGTTGG 57.691 50.000 0.00 0.00 0.00 3.77
156 157 2.562738 GGAATTGGGGGTTCTTCTGTTG 59.437 50.000 0.00 0.00 0.00 3.33
157 158 2.450886 AGGAATTGGGGGTTCTTCTGTT 59.549 45.455 0.00 0.00 0.00 3.16
158 159 2.041755 GAGGAATTGGGGGTTCTTCTGT 59.958 50.000 0.00 0.00 31.30 3.41
159 160 2.310052 AGAGGAATTGGGGGTTCTTCTG 59.690 50.000 0.53 0.00 39.59 3.02
160 161 2.648838 AGAGGAATTGGGGGTTCTTCT 58.351 47.619 0.00 0.00 37.25 2.85
161 162 3.458044 AAGAGGAATTGGGGGTTCTTC 57.542 47.619 0.00 0.00 33.38 2.87
162 163 3.510459 CAAAGAGGAATTGGGGGTTCTT 58.490 45.455 0.00 0.00 0.00 2.52
163 164 2.823152 GCAAAGAGGAATTGGGGGTTCT 60.823 50.000 0.00 0.00 0.00 3.01
164 165 1.550524 GCAAAGAGGAATTGGGGGTTC 59.449 52.381 0.00 0.00 0.00 3.62
165 166 1.644509 GCAAAGAGGAATTGGGGGTT 58.355 50.000 0.00 0.00 0.00 4.11
166 167 0.252239 GGCAAAGAGGAATTGGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
167 168 0.252193 TGGCAAAGAGGAATTGGGGG 60.252 55.000 0.00 0.00 0.00 5.40
168 169 1.188863 CTGGCAAAGAGGAATTGGGG 58.811 55.000 0.00 0.00 0.00 4.96
169 170 0.533951 GCTGGCAAAGAGGAATTGGG 59.466 55.000 0.00 0.00 0.00 4.12
170 171 0.533951 GGCTGGCAAAGAGGAATTGG 59.466 55.000 0.00 0.00 0.00 3.16
171 172 0.533951 GGGCTGGCAAAGAGGAATTG 59.466 55.000 2.88 0.00 0.00 2.32
172 173 0.411058 AGGGCTGGCAAAGAGGAATT 59.589 50.000 2.88 0.00 0.00 2.17
173 174 1.298953 TAGGGCTGGCAAAGAGGAAT 58.701 50.000 2.88 0.00 0.00 3.01
174 175 1.072266 TTAGGGCTGGCAAAGAGGAA 58.928 50.000 2.88 0.00 0.00 3.36
175 176 1.072266 TTTAGGGCTGGCAAAGAGGA 58.928 50.000 2.88 0.00 0.00 3.71
176 177 1.923356 TTTTAGGGCTGGCAAAGAGG 58.077 50.000 2.88 0.00 0.00 3.69
197 198 2.962421 TGGAACGGCAAAGAGGATTTTT 59.038 40.909 0.00 0.00 0.00 1.94
198 199 2.593026 TGGAACGGCAAAGAGGATTTT 58.407 42.857 0.00 0.00 0.00 1.82
199 200 2.286365 TGGAACGGCAAAGAGGATTT 57.714 45.000 0.00 0.00 0.00 2.17
200 201 2.514458 ATGGAACGGCAAAGAGGATT 57.486 45.000 0.00 0.00 0.00 3.01
201 202 2.514458 AATGGAACGGCAAAGAGGAT 57.486 45.000 0.00 0.00 0.00 3.24
202 203 2.286365 AAATGGAACGGCAAAGAGGA 57.714 45.000 0.00 0.00 0.00 3.71
246 247 1.918800 AGGGGGAGTTCTCGTTGGG 60.919 63.158 0.00 0.00 0.00 4.12
249 250 1.536662 AGCAGGGGGAGTTCTCGTT 60.537 57.895 0.00 0.00 0.00 3.85
250 251 1.985116 GAGCAGGGGGAGTTCTCGT 60.985 63.158 0.00 0.00 0.00 4.18
251 252 2.726351 GGAGCAGGGGGAGTTCTCG 61.726 68.421 0.00 0.00 0.00 4.04
252 253 1.613630 TGGAGCAGGGGGAGTTCTC 60.614 63.158 0.00 0.00 0.00 2.87
253 254 1.920835 GTGGAGCAGGGGGAGTTCT 60.921 63.158 0.00 0.00 0.00 3.01
254 255 1.566298 ATGTGGAGCAGGGGGAGTTC 61.566 60.000 0.00 0.00 0.00 3.01
255 256 1.542375 ATGTGGAGCAGGGGGAGTT 60.542 57.895 0.00 0.00 0.00 3.01
256 257 1.997874 GATGTGGAGCAGGGGGAGT 60.998 63.158 0.00 0.00 0.00 3.85
775 800 2.547826 GGCGGTGTTAGATACAGGTTC 58.452 52.381 0.00 0.00 37.45 3.62
927 955 1.177401 CGGTGAGTGGACTCTGATCA 58.823 55.000 8.24 0.00 43.25 2.92
977 1005 3.842126 CGATGCCACTCACACGCG 61.842 66.667 3.53 3.53 0.00 6.01
979 1007 0.737367 ATGTCGATGCCACTCACACG 60.737 55.000 0.00 0.00 0.00 4.49
1090 1119 1.670811 GTTGCAATAGATGTCCCACCG 59.329 52.381 0.59 0.00 0.00 4.94
1122 1153 2.189499 GCGCCAGACATCAATCCCC 61.189 63.158 0.00 0.00 0.00 4.81
1141 1172 1.495878 CATAAGCCTACTCTGCGCAG 58.504 55.000 31.53 31.53 0.00 5.18
1150 1181 4.502431 GCTCTCCTTCTTCCATAAGCCTAC 60.502 50.000 0.00 0.00 32.36 3.18
1153 1184 2.804933 CGCTCTCCTTCTTCCATAAGCC 60.805 54.545 0.00 0.00 32.36 4.35
1156 1187 3.096852 TGACGCTCTCCTTCTTCCATAA 58.903 45.455 0.00 0.00 0.00 1.90
1198 1229 2.034879 GTGGACACACCGGAGCATG 61.035 63.158 9.46 0.00 41.84 4.06
1210 1244 3.788227 AATAAAGCAGGACAGTGGACA 57.212 42.857 0.00 0.00 0.00 4.02
1240 1280 5.003804 ACACGAATAATTTTGGAGCAGACT 58.996 37.500 0.00 0.00 0.00 3.24
1241 1281 5.296813 ACACGAATAATTTTGGAGCAGAC 57.703 39.130 0.00 0.00 0.00 3.51
1242 1282 5.957842 AACACGAATAATTTTGGAGCAGA 57.042 34.783 0.00 0.00 0.00 4.26
1243 1283 7.072177 TCTAACACGAATAATTTTGGAGCAG 57.928 36.000 0.00 0.00 0.00 4.24
1244 1284 7.441890 TTCTAACACGAATAATTTTGGAGCA 57.558 32.000 0.00 0.00 0.00 4.26
1245 1285 7.968405 ACATTCTAACACGAATAATTTTGGAGC 59.032 33.333 0.00 0.00 32.61 4.70
1246 1286 9.840427 AACATTCTAACACGAATAATTTTGGAG 57.160 29.630 0.00 0.00 32.61 3.86
1260 1307 5.527951 TGCACCAATTGAACATTCTAACAC 58.472 37.500 7.12 0.00 0.00 3.32
1287 1335 8.251750 TCAGCTAACATACTTTTGTCATGTAC 57.748 34.615 0.00 0.00 32.70 2.90
1326 1374 4.389374 TGCTTCCTCTTTCGATTTGAAGT 58.611 39.130 0.00 0.00 37.99 3.01
1435 1485 1.885887 GGCAGCCACAATGTCAACTTA 59.114 47.619 6.55 0.00 0.00 2.24
1436 1486 0.675633 GGCAGCCACAATGTCAACTT 59.324 50.000 6.55 0.00 0.00 2.66
1437 1487 0.467844 TGGCAGCCACAATGTCAACT 60.468 50.000 11.22 0.00 0.00 3.16
1443 1886 3.804786 TTCATATTGGCAGCCACAATG 57.195 42.857 15.89 19.93 38.84 2.82
1486 1931 2.762887 CAGGGCATGACTAGAGAGTTGA 59.237 50.000 0.00 0.00 35.45 3.18
1564 2026 0.182061 ACTGGAGTATGCATGCAGGG 59.818 55.000 26.69 12.05 40.14 4.45
1576 2038 5.910614 ACGAAAGTAAGTGTTAACTGGAGT 58.089 37.500 7.22 0.00 46.88 3.85
1616 2091 7.762382 AGGAAAAAGAACAGTACAAGAACAAG 58.238 34.615 0.00 0.00 0.00 3.16
1652 2130 5.418524 AGCCTGCAAATGTATAAACATGTCA 59.581 36.000 0.00 0.00 45.79 3.58
1730 2215 7.165485 ACCTGCAAATGTATACACAAGAAGTA 58.835 34.615 7.96 0.00 38.42 2.24
1734 2219 6.892658 AAACCTGCAAATGTATACACAAGA 57.107 33.333 7.96 0.00 38.42 3.02
1736 2221 7.032580 GCATAAACCTGCAAATGTATACACAA 58.967 34.615 7.96 0.00 41.87 3.33
1771 2268 3.075283 TCTCTTGACTGGAGTTCCTCTCT 59.925 47.826 0.00 0.00 42.40 3.10
1782 2279 4.669206 AGTGATGCTATCTCTTGACTGG 57.331 45.455 0.00 0.00 29.46 4.00
1846 2343 2.571202 CACAAGGGGCCCAAAAATATGT 59.429 45.455 27.72 13.73 0.00 2.29
1890 2387 7.879160 TGGTCACCTTAAGATTTTGTATTACGT 59.121 33.333 3.36 0.00 0.00 3.57
1903 2400 6.269077 TGTCTTTGTCTATGGTCACCTTAAGA 59.731 38.462 3.36 0.00 0.00 2.10
1913 2410 4.877378 TTACCGTGTCTTTGTCTATGGT 57.123 40.909 0.00 0.00 0.00 3.55
2042 2582 9.274206 GAAAGAGAAGTGAGGTACTGTTAATTT 57.726 33.333 0.00 0.00 41.55 1.82
2055 2595 3.740321 GTCTGCACTGAAAGAGAAGTGAG 59.260 47.826 6.98 2.48 45.43 3.51
2127 2667 1.202076 GCTGGCAACGAGATAGTTTGC 60.202 52.381 0.00 0.00 42.51 3.68
2203 2743 4.610007 CGTGCATCTGAACAGAAGTTTCAG 60.610 45.833 8.59 5.85 41.36 3.02
2408 2948 4.020218 TCAAGCTTAGACAACATAGCTGGT 60.020 41.667 0.00 0.00 42.79 4.00
2409 2949 4.507710 TCAAGCTTAGACAACATAGCTGG 58.492 43.478 0.00 0.00 42.79 4.85
2410 2950 5.445142 CGTTCAAGCTTAGACAACATAGCTG 60.445 44.000 0.00 0.00 42.79 4.24
2439 2986 6.441284 TGAAGGCTAGGGTAAGTAATACACAA 59.559 38.462 0.00 0.00 40.63 3.33
2445 2992 9.574516 CAAAATATGAAGGCTAGGGTAAGTAAT 57.425 33.333 0.00 0.00 0.00 1.89
2453 3000 4.464008 TCAGCAAAATATGAAGGCTAGGG 58.536 43.478 0.00 0.00 32.71 3.53
2499 3047 3.745975 CAGCGTCCAGAACAGAAAACATA 59.254 43.478 0.00 0.00 0.00 2.29
2613 3162 4.346709 TCCATAGGAGCGTTGATATCCAAA 59.653 41.667 0.00 0.00 36.36 3.28
2683 3383 4.462133 TGACTATACCTCTGCTACCTCAC 58.538 47.826 0.00 0.00 0.00 3.51
2761 3746 2.768527 TCGCTCCCTCATGATCTTCTTT 59.231 45.455 0.00 0.00 0.00 2.52
2772 3757 1.680522 GCCAGATCTTCGCTCCCTCA 61.681 60.000 0.00 0.00 0.00 3.86
2827 3813 0.902048 TCTGGGCAGTCAGGTCTGAG 60.902 60.000 0.28 0.00 40.75 3.35
2837 3823 3.837355 ACTTCATTTCTTTCTGGGCAGT 58.163 40.909 0.00 0.00 0.00 4.40
2869 3857 6.967135 AGAATATATCTTGTCGCACGTAGAA 58.033 36.000 0.00 0.00 33.39 2.10
2870 3858 6.555812 AGAATATATCTTGTCGCACGTAGA 57.444 37.500 0.00 0.00 33.39 2.59
3032 4027 9.141400 GAGCCTTATTAGTGTTATTCCGAATAG 57.859 37.037 1.21 0.00 0.00 1.73
3104 4160 4.160329 GGACCCCATTTCCTTTTCTTTCT 58.840 43.478 0.00 0.00 0.00 2.52
3105 4161 3.901222 TGGACCCCATTTCCTTTTCTTTC 59.099 43.478 0.00 0.00 33.84 2.62
3106 4162 3.935172 TGGACCCCATTTCCTTTTCTTT 58.065 40.909 0.00 0.00 33.84 2.52
3107 4163 3.628832 TGGACCCCATTTCCTTTTCTT 57.371 42.857 0.00 0.00 33.84 2.52
3108 4164 3.628832 TTGGACCCCATTTCCTTTTCT 57.371 42.857 0.00 0.00 33.84 2.52
3109 4165 4.096681 AGATTGGACCCCATTTCCTTTTC 58.903 43.478 0.00 0.00 33.84 2.29
3110 4166 4.096681 GAGATTGGACCCCATTTCCTTTT 58.903 43.478 0.00 0.00 33.84 2.27
3111 4167 3.077391 TGAGATTGGACCCCATTTCCTTT 59.923 43.478 0.00 0.00 33.84 3.11
3112 4168 2.654385 TGAGATTGGACCCCATTTCCTT 59.346 45.455 0.00 0.00 33.84 3.36
3113 4169 2.287584 TGAGATTGGACCCCATTTCCT 58.712 47.619 0.00 0.00 33.84 3.36
3114 4170 2.826674 TGAGATTGGACCCCATTTCC 57.173 50.000 0.00 0.00 31.53 3.13
3115 4171 4.528206 AGTTTTGAGATTGGACCCCATTTC 59.472 41.667 0.00 0.00 31.53 2.17
3116 4172 4.284234 CAGTTTTGAGATTGGACCCCATTT 59.716 41.667 0.00 0.00 31.53 2.32
3117 4173 3.834231 CAGTTTTGAGATTGGACCCCATT 59.166 43.478 0.00 0.00 31.53 3.16
3118 4174 3.075882 TCAGTTTTGAGATTGGACCCCAT 59.924 43.478 0.00 0.00 31.53 4.00
3200 4256 2.928731 GCTCTTCTCTTTGACTCCACCG 60.929 54.545 0.00 0.00 0.00 4.94
3202 4258 2.037772 TGGCTCTTCTCTTTGACTCCAC 59.962 50.000 0.00 0.00 0.00 4.02
3330 4386 9.295825 TGTAGTGGAGAATACATTTTCAAACAT 57.704 29.630 0.00 0.00 0.00 2.71
3331 4387 8.684386 TGTAGTGGAGAATACATTTTCAAACA 57.316 30.769 0.00 0.00 0.00 2.83
3332 4388 8.784043 ACTGTAGTGGAGAATACATTTTCAAAC 58.216 33.333 0.00 0.00 31.79 2.93
3333 4389 8.783093 CACTGTAGTGGAGAATACATTTTCAAA 58.217 33.333 4.10 0.00 42.10 2.69
3334 4390 8.322906 CACTGTAGTGGAGAATACATTTTCAA 57.677 34.615 4.10 0.00 42.10 2.69
3335 4391 7.905604 CACTGTAGTGGAGAATACATTTTCA 57.094 36.000 4.10 0.00 42.10 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.