Multiple sequence alignment - TraesCS7B01G224500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G224500 chr7B 100.000 3539 0 0 4313 7851 424540210 424543748 0.000000e+00 6536.0
1 TraesCS7B01G224500 chr7B 100.000 3255 0 0 1 3255 424535898 424539152 0.000000e+00 6011.0
2 TraesCS7B01G224500 chr7B 95.021 703 23 5 1 694 587671025 587670326 0.000000e+00 1094.0
3 TraesCS7B01G224500 chr7B 97.046 237 6 1 1497 1733 424542333 424542098 1.590000e-106 398.0
4 TraesCS7B01G224500 chr3A 99.622 2115 8 0 4313 6427 444444445 444446559 0.000000e+00 3862.0
5 TraesCS7B01G224500 chr3A 99.453 1096 6 0 2160 3255 444442853 444443948 0.000000e+00 1991.0
6 TraesCS7B01G224500 chr3A 98.933 656 7 0 1507 2162 444439480 444440135 0.000000e+00 1173.0
7 TraesCS7B01G224500 chr3A 83.333 258 39 4 6703 6958 722180907 722180652 1.320000e-57 235.0
8 TraesCS7B01G224500 chr2A 99.433 2115 12 0 4313 6427 630237039 630239153 0.000000e+00 3840.0
9 TraesCS7B01G224500 chr2A 99.848 656 1 0 1507 2162 630232427 630233082 0.000000e+00 1206.0
10 TraesCS7B01G224500 chr2A 82.353 238 40 2 1270 1506 90428389 90428153 1.030000e-48 206.0
11 TraesCS7B01G224500 chr2A 79.389 262 43 10 1235 1489 90509127 90508870 2.910000e-39 174.0
12 TraesCS7B01G224500 chr7A 99.385 2115 13 0 4313 6427 533733108 533735222 0.000000e+00 3834.0
13 TraesCS7B01G224500 chr7A 99.291 2116 14 1 4313 6427 473486456 473484341 0.000000e+00 3823.0
14 TraesCS7B01G224500 chr7A 99.453 1096 6 0 2160 3255 533731085 533732180 0.000000e+00 1991.0
15 TraesCS7B01G224500 chr7A 99.453 1096 6 0 2160 3255 701577156 701578251 0.000000e+00 1991.0
16 TraesCS7B01G224500 chr7A 99.361 1096 6 1 2161 3255 65083066 65081971 0.000000e+00 1984.0
17 TraesCS7B01G224500 chr7A 99.238 656 4 1 1507 2162 533727713 533728367 0.000000e+00 1182.0
18 TraesCS7B01G224500 chr7A 98.941 661 4 3 1503 2162 473491498 473490840 0.000000e+00 1179.0
19 TraesCS7B01G224500 chr7A 91.272 676 50 3 831 1506 470918165 470918831 0.000000e+00 913.0
20 TraesCS7B01G224500 chr7A 88.258 528 32 6 7154 7680 470999333 470999831 8.710000e-169 604.0
21 TraesCS7B01G224500 chr7A 92.469 239 14 4 6657 6891 470918983 470919221 9.760000e-89 339.0
22 TraesCS7B01G224500 chr7A 90.083 121 8 2 6887 7004 470998967 470999086 3.790000e-33 154.0
23 TraesCS7B01G224500 chr7A 88.696 115 13 0 1393 1507 570183063 570182949 2.950000e-29 141.0
24 TraesCS7B01G224500 chr7A 81.928 166 11 10 695 841 470917479 470917644 1.070000e-23 122.0
25 TraesCS7B01G224500 chr4B 99.386 2116 12 1 4313 6427 312782841 312784956 0.000000e+00 3834.0
26 TraesCS7B01G224500 chr4B 99.243 2115 15 1 4313 6427 238171408 238169295 0.000000e+00 3816.0
27 TraesCS7B01G224500 chr4B 99.635 1096 4 0 2160 3255 238172833 238171738 0.000000e+00 2002.0
28 TraesCS7B01G224500 chr4B 96.721 671 7 1 1507 2162 238176219 238175549 0.000000e+00 1103.0
29 TraesCS7B01G224500 chr4B 94.405 697 31 6 1 695 221094809 221094119 0.000000e+00 1064.0
30 TraesCS7B01G224500 chr3B 99.338 2116 14 0 4313 6428 472656423 472654308 0.000000e+00 3831.0
31 TraesCS7B01G224500 chr3B 99.244 2116 14 2 4313 6427 39638509 39640623 0.000000e+00 3818.0
32 TraesCS7B01G224500 chr3B 98.936 658 7 0 1505 2162 39633571 39634228 0.000000e+00 1177.0
33 TraesCS7B01G224500 chr3B 98.780 656 5 1 1507 2162 472660410 472659758 0.000000e+00 1164.0
34 TraesCS7B01G224500 chr3B 95.584 702 20 5 1 693 670194217 670194916 0.000000e+00 1114.0
35 TraesCS7B01G224500 chr3B 93.872 718 34 7 1 711 177492161 177492875 0.000000e+00 1074.0
36 TraesCS7B01G224500 chr3B 99.554 224 1 0 1507 1730 472654309 472654532 7.330000e-110 409.0
37 TraesCS7B01G224500 chr1A 99.197 2118 17 0 4313 6430 237742446 237744563 0.000000e+00 3818.0
38 TraesCS7B01G224500 chr1A 99.361 1096 7 0 2160 3255 394245562 394244467 0.000000e+00 1986.0
39 TraesCS7B01G224500 chr1A 99.391 657 4 0 1506 2162 237736561 237737217 0.000000e+00 1192.0
40 TraesCS7B01G224500 chr1A 96.641 655 7 1 1523 2162 27325855 27325201 0.000000e+00 1074.0
41 TraesCS7B01G224500 chr1A 76.000 575 93 29 910 1468 584597030 584597575 1.010000e-63 255.0
42 TraesCS7B01G224500 chr1A 85.169 236 21 11 7322 7550 584598216 584598444 6.130000e-56 230.0
43 TraesCS7B01G224500 chr5B 99.453 1096 6 0 2160 3255 311957890 311958985 0.000000e+00 1991.0
44 TraesCS7B01G224500 chr5B 99.361 1096 7 0 2160 3255 185037410 185038505 0.000000e+00 1986.0
45 TraesCS7B01G224500 chr5B 95.286 700 25 6 1 694 547314581 547315278 0.000000e+00 1103.0
46 TraesCS7B01G224500 chr5B 95.087 692 22 4 9 694 676246539 676245854 0.000000e+00 1079.0
47 TraesCS7B01G224500 chr4A 99.270 1096 8 0 2160 3255 36319109 36320204 0.000000e+00 1980.0
48 TraesCS7B01G224500 chr7D 95.316 790 30 3 697 1485 411018693 411017910 0.000000e+00 1247.0
49 TraesCS7B01G224500 chr7D 86.792 954 77 23 6428 7360 411015287 411014362 0.000000e+00 1018.0
50 TraesCS7B01G224500 chr7D 90.714 420 36 3 7337 7755 411014233 411013816 2.470000e-154 556.0
51 TraesCS7B01G224500 chr7D 100.000 30 0 0 1477 1506 411015308 411015279 1.000000e-03 56.5
52 TraesCS7B01G224500 chr6B 95.565 699 28 2 1 696 577375289 577375987 0.000000e+00 1116.0
53 TraesCS7B01G224500 chrUn 94.684 696 26 4 1 691 307386490 307387179 0.000000e+00 1070.0
54 TraesCS7B01G224500 chrUn 94.176 704 27 7 1 696 375138804 375139501 0.000000e+00 1061.0
55 TraesCS7B01G224500 chr1D 76.655 574 91 28 912 1469 487136220 487136766 2.160000e-70 278.0
56 TraesCS7B01G224500 chr2B 81.439 264 40 9 1232 1489 143484367 143484627 2.870000e-49 207.0
57 TraesCS7B01G224500 chr2B 81.513 238 42 2 1270 1506 143281473 143281237 2.240000e-45 195.0
58 TraesCS7B01G224500 chr2D 80.843 261 41 9 1235 1489 89215555 89215298 6.220000e-46 196.0
59 TraesCS7B01G224500 chr2D 81.513 238 42 2 1270 1506 90522626 90522390 2.240000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G224500 chr7B 424535898 424543748 7850 False 6273.500000 6536 100.000000 1 7851 2 chr7B.!!$F1 7850
1 TraesCS7B01G224500 chr7B 587670326 587671025 699 True 1094.000000 1094 95.021000 1 694 1 chr7B.!!$R2 693
2 TraesCS7B01G224500 chr3A 444439480 444446559 7079 False 2342.000000 3862 99.336000 1507 6427 3 chr3A.!!$F1 4920
3 TraesCS7B01G224500 chr2A 630232427 630239153 6726 False 2523.000000 3840 99.640500 1507 6427 2 chr2A.!!$F1 4920
4 TraesCS7B01G224500 chr7A 473484341 473486456 2115 True 3823.000000 3823 99.291000 4313 6427 1 chr7A.!!$R2 2114
5 TraesCS7B01G224500 chr7A 533727713 533735222 7509 False 2335.666667 3834 99.358667 1507 6427 3 chr7A.!!$F4 4920
6 TraesCS7B01G224500 chr7A 701577156 701578251 1095 False 1991.000000 1991 99.453000 2160 3255 1 chr7A.!!$F1 1095
7 TraesCS7B01G224500 chr7A 65081971 65083066 1095 True 1984.000000 1984 99.361000 2161 3255 1 chr7A.!!$R1 1094
8 TraesCS7B01G224500 chr7A 473490840 473491498 658 True 1179.000000 1179 98.941000 1503 2162 1 chr7A.!!$R3 659
9 TraesCS7B01G224500 chr7A 470917479 470919221 1742 False 458.000000 913 88.556333 695 6891 3 chr7A.!!$F2 6196
10 TraesCS7B01G224500 chr7A 470998967 470999831 864 False 379.000000 604 89.170500 6887 7680 2 chr7A.!!$F3 793
11 TraesCS7B01G224500 chr4B 312782841 312784956 2115 False 3834.000000 3834 99.386000 4313 6427 1 chr4B.!!$F1 2114
12 TraesCS7B01G224500 chr4B 238169295 238176219 6924 True 2307.000000 3816 98.533000 1507 6427 3 chr4B.!!$R2 4920
13 TraesCS7B01G224500 chr4B 221094119 221094809 690 True 1064.000000 1064 94.405000 1 695 1 chr4B.!!$R1 694
14 TraesCS7B01G224500 chr3B 39638509 39640623 2114 False 3818.000000 3818 99.244000 4313 6427 1 chr3B.!!$F2 2114
15 TraesCS7B01G224500 chr3B 472654308 472660410 6102 True 2497.500000 3831 99.059000 1507 6428 2 chr3B.!!$R1 4921
16 TraesCS7B01G224500 chr3B 39633571 39634228 657 False 1177.000000 1177 98.936000 1505 2162 1 chr3B.!!$F1 657
17 TraesCS7B01G224500 chr3B 670194217 670194916 699 False 1114.000000 1114 95.584000 1 693 1 chr3B.!!$F5 692
18 TraesCS7B01G224500 chr3B 177492161 177492875 714 False 1074.000000 1074 93.872000 1 711 1 chr3B.!!$F3 710
19 TraesCS7B01G224500 chr1A 237742446 237744563 2117 False 3818.000000 3818 99.197000 4313 6430 1 chr1A.!!$F2 2117
20 TraesCS7B01G224500 chr1A 394244467 394245562 1095 True 1986.000000 1986 99.361000 2160 3255 1 chr1A.!!$R2 1095
21 TraesCS7B01G224500 chr1A 237736561 237737217 656 False 1192.000000 1192 99.391000 1506 2162 1 chr1A.!!$F1 656
22 TraesCS7B01G224500 chr1A 27325201 27325855 654 True 1074.000000 1074 96.641000 1523 2162 1 chr1A.!!$R1 639
23 TraesCS7B01G224500 chr1A 584597030 584598444 1414 False 242.500000 255 80.584500 910 7550 2 chr1A.!!$F3 6640
24 TraesCS7B01G224500 chr5B 311957890 311958985 1095 False 1991.000000 1991 99.453000 2160 3255 1 chr5B.!!$F2 1095
25 TraesCS7B01G224500 chr5B 185037410 185038505 1095 False 1986.000000 1986 99.361000 2160 3255 1 chr5B.!!$F1 1095
26 TraesCS7B01G224500 chr5B 547314581 547315278 697 False 1103.000000 1103 95.286000 1 694 1 chr5B.!!$F3 693
27 TraesCS7B01G224500 chr5B 676245854 676246539 685 True 1079.000000 1079 95.087000 9 694 1 chr5B.!!$R1 685
28 TraesCS7B01G224500 chr4A 36319109 36320204 1095 False 1980.000000 1980 99.270000 2160 3255 1 chr4A.!!$F1 1095
29 TraesCS7B01G224500 chr7D 411013816 411018693 4877 True 719.375000 1247 93.205500 697 7755 4 chr7D.!!$R1 7058
30 TraesCS7B01G224500 chr6B 577375289 577375987 698 False 1116.000000 1116 95.565000 1 696 1 chr6B.!!$F1 695
31 TraesCS7B01G224500 chrUn 307386490 307387179 689 False 1070.000000 1070 94.684000 1 691 1 chrUn.!!$F1 690
32 TraesCS7B01G224500 chrUn 375138804 375139501 697 False 1061.000000 1061 94.176000 1 696 1 chrUn.!!$F2 695
33 TraesCS7B01G224500 chr1D 487136220 487136766 546 False 278.000000 278 76.655000 912 1469 1 chr1D.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 369 0.025898 GACGACGACGACGATGATGA 59.974 55.000 25.15 0.0 42.66 2.92 F
371 375 0.025898 GACGACGATGATGACGACGA 59.974 55.000 16.55 0.0 46.85 4.20 F
418 422 0.105039 CCTCCTCGGCATGTAGAACC 59.895 60.000 0.00 0.0 0.00 3.62 F
540 544 0.248054 CGCCGATGCTTGCGTTAAAT 60.248 50.000 0.00 0.0 45.43 1.40 F
2509 11197 0.532115 CATGTGGTAAGCCCCTTTGC 59.468 55.000 0.00 0.0 0.00 3.68 F
2717 11426 1.002502 GGGCTCCTACACCAACACC 60.003 63.158 0.00 0.0 0.00 4.16 F
2719 11428 1.272807 GGCTCCTACACCAACACCTA 58.727 55.000 0.00 0.0 0.00 3.08 F
2720 11429 1.626825 GGCTCCTACACCAACACCTAA 59.373 52.381 0.00 0.0 0.00 2.69 F
2727 11436 1.774856 ACACCAACACCTAAAGCTCCT 59.225 47.619 0.00 0.0 0.00 3.69 F
4985 13694 2.219458 CCTTCATATCAGCCAGCAGTG 58.781 52.381 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1886 0.103208 CCTCAGCGGCGTCTATCTTT 59.897 55.000 9.37 0.00 0.00 2.52 R
1349 1912 0.179004 TTCCACCATGTCAAAGGCGT 60.179 50.000 0.00 0.00 0.00 5.68 R
2509 11197 9.390795 CAGAAACATCAAAATGAAGAACTAGTG 57.609 33.333 0.00 0.00 36.67 2.74 R
2719 11428 1.493022 TGGTGTTGGTGTAGGAGCTTT 59.507 47.619 0.00 0.00 0.00 3.51 R
4849 13558 6.372659 TCCAGAACTTGAAGTTGAAGCATATC 59.627 38.462 16.25 0.00 38.80 1.63 R
6431 15221 0.179119 GGGTTAGTGTCGTCGATGGG 60.179 60.000 4.48 0.00 0.00 4.00 R
6432 15222 0.179119 GGGGTTAGTGTCGTCGATGG 60.179 60.000 4.48 0.00 0.00 3.51 R
6433 15223 0.528924 TGGGGTTAGTGTCGTCGATG 59.471 55.000 0.00 0.00 0.00 3.84 R
6435 15225 0.599558 CTTGGGGTTAGTGTCGTCGA 59.400 55.000 0.00 0.00 0.00 4.20 R
7806 16981 0.041238 ACGTCCAGATCAAGGGAGGA 59.959 55.000 20.59 5.66 40.59 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 67 4.069232 CTCGTCGAGCCCAAGCCA 62.069 66.667 9.74 0.00 41.25 4.75
177 181 4.148825 GAGATGGTCCGGCAGCGT 62.149 66.667 0.00 0.00 0.00 5.07
250 254 3.733960 TCGTGGTCCTCGACAGCG 61.734 66.667 11.90 0.00 33.68 5.18
251 255 3.733960 CGTGGTCCTCGACAGCGA 61.734 66.667 7.59 0.00 45.71 4.93
252 256 2.126424 GTGGTCCTCGACAGCGAC 60.126 66.667 0.00 0.00 42.51 5.19
253 257 3.733960 TGGTCCTCGACAGCGACG 61.734 66.667 0.00 0.00 42.51 5.12
254 258 3.429141 GGTCCTCGACAGCGACGA 61.429 66.667 0.00 0.00 42.51 4.20
255 259 2.202324 GTCCTCGACAGCGACGAC 60.202 66.667 0.00 0.00 42.51 4.34
256 260 3.785499 TCCTCGACAGCGACGACG 61.785 66.667 2.12 2.12 42.51 5.12
257 261 3.785499 CCTCGACAGCGACGACGA 61.785 66.667 12.29 2.97 42.51 4.20
258 262 2.571096 CTCGACAGCGACGACGAC 60.571 66.667 12.29 2.46 42.51 4.34
259 263 4.419957 TCGACAGCGACGACGACG 62.420 66.667 15.13 15.13 42.51 5.12
260 264 4.419957 CGACAGCGACGACGACGA 62.420 66.667 22.94 0.00 42.66 4.20
261 265 2.864248 GACAGCGACGACGACGAC 60.864 66.667 22.94 13.66 42.66 4.34
310 314 4.364686 ACCAACCGGGGGAGGGAT 62.365 66.667 20.07 0.00 42.91 3.85
311 315 3.809013 CCAACCGGGGGAGGGATG 61.809 72.222 6.32 0.00 35.02 3.51
312 316 4.506255 CAACCGGGGGAGGGATGC 62.506 72.222 6.32 0.00 35.02 3.91
317 321 4.201122 GGGGGAGGGATGCAGCAG 62.201 72.222 3.51 0.00 0.00 4.24
318 322 4.201122 GGGGAGGGATGCAGCAGG 62.201 72.222 3.51 0.00 0.00 4.85
319 323 4.201122 GGGAGGGATGCAGCAGGG 62.201 72.222 3.51 0.00 0.00 4.45
320 324 3.092511 GGAGGGATGCAGCAGGGA 61.093 66.667 3.51 0.00 0.00 4.20
321 325 2.191641 GAGGGATGCAGCAGGGAC 59.808 66.667 3.51 0.00 0.00 4.46
322 326 3.746949 GAGGGATGCAGCAGGGACG 62.747 68.421 3.51 0.00 0.00 4.79
323 327 4.864334 GGGATGCAGCAGGGACGG 62.864 72.222 3.51 0.00 0.00 4.79
363 367 4.970174 GACGACGACGACGATGAT 57.030 55.556 25.15 3.47 42.66 2.45
364 368 2.471065 GACGACGACGACGATGATG 58.529 57.895 25.15 1.27 42.66 3.07
365 369 0.025898 GACGACGACGACGATGATGA 59.974 55.000 25.15 0.00 42.66 2.92
366 370 0.247576 ACGACGACGACGATGATGAC 60.248 55.000 25.15 0.00 42.66 3.06
367 371 1.247261 CGACGACGACGATGATGACG 61.247 60.000 15.32 4.36 42.66 4.35
368 372 0.025898 GACGACGACGATGATGACGA 59.974 55.000 15.32 0.00 42.66 4.20
369 373 0.247576 ACGACGACGATGATGACGAC 60.248 55.000 15.32 0.00 42.66 4.34
371 375 0.025898 GACGACGATGATGACGACGA 59.974 55.000 16.55 0.00 46.85 4.20
372 376 0.247576 ACGACGATGATGACGACGAC 60.248 55.000 16.55 0.00 46.85 4.34
373 377 1.247261 CGACGATGATGACGACGACG 61.247 60.000 5.58 5.58 46.85 5.12
374 378 0.924363 GACGATGATGACGACGACGG 60.924 60.000 12.58 0.00 44.46 4.79
383 387 3.792047 CGACGACGGCGGTGACTA 61.792 66.667 18.49 0.00 43.17 2.59
384 388 2.202401 GACGACGGCGGTGACTAC 60.202 66.667 18.49 0.00 43.17 2.73
385 389 2.969806 GACGACGGCGGTGACTACA 61.970 63.158 18.49 0.00 43.17 2.74
386 390 2.503375 CGACGGCGGTGACTACAC 60.503 66.667 13.24 0.00 45.27 2.90
387 391 2.503375 GACGGCGGTGACTACACG 60.503 66.667 13.24 0.00 46.77 4.49
388 392 4.712425 ACGGCGGTGACTACACGC 62.712 66.667 13.24 0.00 46.77 5.34
391 395 4.712425 GCGGTGACTACACGCGGT 62.712 66.667 12.47 8.38 46.77 5.68
392 396 2.049802 CGGTGACTACACGCGGTT 60.050 61.111 12.47 0.00 46.77 4.44
393 397 2.084681 CGGTGACTACACGCGGTTC 61.085 63.158 12.47 1.85 46.77 3.62
394 398 1.288127 GGTGACTACACGCGGTTCT 59.712 57.895 12.47 0.00 46.77 3.01
395 399 0.523072 GGTGACTACACGCGGTTCTA 59.477 55.000 12.47 0.00 46.77 2.10
396 400 1.611043 GTGACTACACGCGGTTCTAC 58.389 55.000 12.47 0.00 37.28 2.59
397 401 1.069022 GTGACTACACGCGGTTCTACA 60.069 52.381 12.47 0.68 37.28 2.74
398 402 1.198408 TGACTACACGCGGTTCTACAG 59.802 52.381 12.47 2.13 0.00 2.74
399 403 0.109412 ACTACACGCGGTTCTACAGC 60.109 55.000 12.47 0.00 35.94 4.40
400 404 0.801067 CTACACGCGGTTCTACAGCC 60.801 60.000 12.47 0.00 35.89 4.85
401 405 1.246056 TACACGCGGTTCTACAGCCT 61.246 55.000 12.47 0.00 35.89 4.58
402 406 1.805945 CACGCGGTTCTACAGCCTC 60.806 63.158 12.47 0.00 35.89 4.70
403 407 2.202756 CGCGGTTCTACAGCCTCC 60.203 66.667 0.00 0.00 35.89 4.30
404 408 2.711922 CGCGGTTCTACAGCCTCCT 61.712 63.158 0.00 0.00 35.89 3.69
405 409 1.142097 GCGGTTCTACAGCCTCCTC 59.858 63.158 0.00 0.00 33.12 3.71
406 410 1.433879 CGGTTCTACAGCCTCCTCG 59.566 63.158 0.00 0.00 0.00 4.63
407 411 1.817209 GGTTCTACAGCCTCCTCGG 59.183 63.158 0.00 0.00 0.00 4.63
417 421 3.669354 CCTCCTCGGCATGTAGAAC 57.331 57.895 0.00 0.00 0.00 3.01
418 422 0.105039 CCTCCTCGGCATGTAGAACC 59.895 60.000 0.00 0.00 0.00 3.62
420 424 1.883084 CCTCGGCATGTAGAACCGC 60.883 63.158 4.05 0.00 46.49 5.68
421 425 2.202690 TCGGCATGTAGAACCGCG 60.203 61.111 0.00 0.00 46.49 6.46
422 426 2.508439 CGGCATGTAGAACCGCGT 60.508 61.111 4.92 0.00 40.55 6.01
423 427 2.798501 CGGCATGTAGAACCGCGTG 61.799 63.158 4.92 0.00 40.55 5.34
424 428 2.461110 GGCATGTAGAACCGCGTGG 61.461 63.158 14.93 14.93 42.84 4.94
425 429 2.461110 GCATGTAGAACCGCGTGGG 61.461 63.158 21.14 6.53 40.75 4.61
426 430 2.125269 ATGTAGAACCGCGTGGGC 60.125 61.111 21.14 11.05 40.62 5.36
464 468 3.711059 GAGGGAGACGGCGAGGGTA 62.711 68.421 16.62 0.00 0.00 3.69
465 469 3.217743 GGGAGACGGCGAGGGTAG 61.218 72.222 16.62 0.00 0.00 3.18
466 470 3.902086 GGAGACGGCGAGGGTAGC 61.902 72.222 16.62 0.00 0.00 3.58
477 481 3.464494 GGGTAGCCCGCGGTAGTT 61.464 66.667 26.12 10.37 32.13 2.24
478 482 2.580815 GGTAGCCCGCGGTAGTTT 59.419 61.111 26.12 6.86 0.00 2.66
479 483 1.078918 GGTAGCCCGCGGTAGTTTT 60.079 57.895 26.12 4.98 0.00 2.43
480 484 0.674581 GGTAGCCCGCGGTAGTTTTT 60.675 55.000 26.12 3.49 0.00 1.94
522 526 8.928844 AATATGTTTAAGTTTGAACGAACTCG 57.071 30.769 7.74 0.00 38.86 4.18
523 527 4.580528 TGTTTAAGTTTGAACGAACTCGC 58.419 39.130 7.74 1.40 44.43 5.03
524 528 3.865224 TTAAGTTTGAACGAACTCGCC 57.135 42.857 7.74 0.00 44.43 5.54
525 529 0.580104 AAGTTTGAACGAACTCGCCG 59.420 50.000 7.74 0.00 44.43 6.46
526 530 0.249155 AGTTTGAACGAACTCGCCGA 60.249 50.000 0.00 0.00 44.43 5.54
527 531 0.788391 GTTTGAACGAACTCGCCGAT 59.212 50.000 0.00 0.00 44.43 4.18
528 532 0.787787 TTTGAACGAACTCGCCGATG 59.212 50.000 0.00 0.00 44.43 3.84
529 533 1.623081 TTGAACGAACTCGCCGATGC 61.623 55.000 0.00 0.00 44.43 3.91
530 534 1.805945 GAACGAACTCGCCGATGCT 60.806 57.895 0.00 0.00 44.43 3.79
531 535 1.352156 GAACGAACTCGCCGATGCTT 61.352 55.000 0.00 0.00 44.43 3.91
532 536 1.626654 AACGAACTCGCCGATGCTTG 61.627 55.000 0.00 0.00 44.43 4.01
533 537 2.401195 GAACTCGCCGATGCTTGC 59.599 61.111 0.00 0.00 34.43 4.01
538 542 2.781957 CGCCGATGCTTGCGTTAA 59.218 55.556 0.00 0.00 45.43 2.01
539 543 1.133664 CGCCGATGCTTGCGTTAAA 59.866 52.632 0.00 0.00 45.43 1.52
540 544 0.248054 CGCCGATGCTTGCGTTAAAT 60.248 50.000 0.00 0.00 45.43 1.40
541 545 1.793714 CGCCGATGCTTGCGTTAAATT 60.794 47.619 0.00 0.00 45.43 1.82
542 546 2.258755 GCCGATGCTTGCGTTAAATTT 58.741 42.857 0.00 0.00 33.53 1.82
543 547 3.430931 GCCGATGCTTGCGTTAAATTTA 58.569 40.909 0.00 0.00 33.53 1.40
544 548 3.854809 GCCGATGCTTGCGTTAAATTTAA 59.145 39.130 6.54 6.54 33.53 1.52
545 549 4.027702 GCCGATGCTTGCGTTAAATTTAAG 60.028 41.667 10.92 6.90 33.53 1.85
546 550 5.092781 CCGATGCTTGCGTTAAATTTAAGT 58.907 37.500 10.92 0.00 0.00 2.24
547 551 5.227184 CCGATGCTTGCGTTAAATTTAAGTC 59.773 40.000 10.92 6.65 0.00 3.01
548 552 5.053932 CGATGCTTGCGTTAAATTTAAGTCG 60.054 40.000 10.92 12.53 0.00 4.18
549 553 5.098218 TGCTTGCGTTAAATTTAAGTCGT 57.902 34.783 10.92 0.00 0.00 4.34
550 554 5.512473 TGCTTGCGTTAAATTTAAGTCGTT 58.488 33.333 10.92 0.00 0.00 3.85
551 555 5.972382 TGCTTGCGTTAAATTTAAGTCGTTT 59.028 32.000 10.92 0.00 0.00 3.60
552 556 6.472808 TGCTTGCGTTAAATTTAAGTCGTTTT 59.527 30.769 10.92 0.00 0.00 2.43
553 557 7.009357 TGCTTGCGTTAAATTTAAGTCGTTTTT 59.991 29.630 10.92 0.00 0.00 1.94
554 558 7.314712 GCTTGCGTTAAATTTAAGTCGTTTTTG 59.685 33.333 10.92 4.81 0.00 2.44
555 559 6.629101 TGCGTTAAATTTAAGTCGTTTTTGC 58.371 32.000 10.92 5.40 0.00 3.68
556 560 5.770255 GCGTTAAATTTAAGTCGTTTTTGCG 59.230 36.000 10.92 8.07 0.00 4.85
557 561 5.770255 CGTTAAATTTAAGTCGTTTTTGCGC 59.230 36.000 10.92 0.00 0.00 6.09
558 562 4.702247 AAATTTAAGTCGTTTTTGCGCC 57.298 36.364 4.18 0.00 0.00 6.53
559 563 1.744374 TTTAAGTCGTTTTTGCGCCG 58.256 45.000 4.18 0.00 0.00 6.46
560 564 0.656785 TTAAGTCGTTTTTGCGCCGT 59.343 45.000 4.18 0.00 0.00 5.68
561 565 1.495878 TAAGTCGTTTTTGCGCCGTA 58.504 45.000 4.18 0.00 0.00 4.02
562 566 0.869730 AAGTCGTTTTTGCGCCGTAT 59.130 45.000 4.18 0.00 0.00 3.06
563 567 0.869730 AGTCGTTTTTGCGCCGTATT 59.130 45.000 4.18 0.00 0.00 1.89
564 568 1.264826 AGTCGTTTTTGCGCCGTATTT 59.735 42.857 4.18 0.00 0.00 1.40
565 569 2.479656 AGTCGTTTTTGCGCCGTATTTA 59.520 40.909 4.18 0.00 0.00 1.40
566 570 3.059051 AGTCGTTTTTGCGCCGTATTTAA 60.059 39.130 4.18 0.00 0.00 1.52
567 571 3.056705 GTCGTTTTTGCGCCGTATTTAAC 59.943 43.478 4.18 0.00 0.00 2.01
568 572 3.059051 TCGTTTTTGCGCCGTATTTAACT 60.059 39.130 4.18 0.00 0.00 2.24
569 573 3.664947 CGTTTTTGCGCCGTATTTAACTT 59.335 39.130 4.18 0.00 0.00 2.66
570 574 4.146788 CGTTTTTGCGCCGTATTTAACTTT 59.853 37.500 4.18 0.00 0.00 2.66
571 575 5.331681 CGTTTTTGCGCCGTATTTAACTTTT 60.332 36.000 4.18 0.00 0.00 2.27
572 576 6.412460 GTTTTTGCGCCGTATTTAACTTTTT 58.588 32.000 4.18 0.00 0.00 1.94
589 593 0.873721 TTTTTACTAACCGTGGGCGC 59.126 50.000 0.00 0.00 36.67 6.53
590 594 0.954938 TTTTACTAACCGTGGGCGCC 60.955 55.000 21.18 21.18 36.67 6.53
591 595 3.646023 TTACTAACCGTGGGCGCCG 62.646 63.158 22.54 9.21 36.67 6.46
607 611 3.770040 CGCGACTGGGGGACATCA 61.770 66.667 0.00 0.00 0.00 3.07
608 612 2.125106 GCGACTGGGGGACATCAC 60.125 66.667 0.00 0.00 0.00 3.06
609 613 2.184322 CGACTGGGGGACATCACG 59.816 66.667 0.00 0.00 0.00 4.35
610 614 2.125106 GACTGGGGGACATCACGC 60.125 66.667 0.00 0.00 0.00 5.34
611 615 3.682292 GACTGGGGGACATCACGCC 62.682 68.421 0.00 0.00 41.28 5.68
616 620 4.041762 GGGACATCACGCCCCCAA 62.042 66.667 0.00 0.00 38.45 4.12
617 621 2.275418 GGACATCACGCCCCCAAT 59.725 61.111 0.00 0.00 0.00 3.16
618 622 2.120909 GGACATCACGCCCCCAATG 61.121 63.158 0.00 0.00 0.00 2.82
619 623 2.755469 ACATCACGCCCCCAATGC 60.755 61.111 0.00 0.00 0.00 3.56
627 631 2.752238 CCCCCAATGCGCGGTTTA 60.752 61.111 8.83 0.00 0.00 2.01
628 632 2.770589 CCCCCAATGCGCGGTTTAG 61.771 63.158 8.83 0.00 0.00 1.85
629 633 2.102161 CCCAATGCGCGGTTTAGC 59.898 61.111 8.83 0.00 0.00 3.09
676 680 4.101448 CCTCCTGGAGGGCCAACG 62.101 72.222 31.49 7.14 45.43 4.10
677 681 4.101448 CTCCTGGAGGGCCAACGG 62.101 72.222 16.19 2.33 45.41 4.44
725 729 1.310933 TAGCTCTGTCCGACGTTCCC 61.311 60.000 0.00 0.00 0.00 3.97
808 831 3.722147 CAAGGACGAACTAGGATCATGG 58.278 50.000 0.00 0.00 0.00 3.66
1030 1584 1.403780 GGTACTACGAGGGCAACTGTG 60.404 57.143 0.00 0.00 0.00 3.66
1113 1676 2.156098 GGGCAGTTTTATCCGTGTCAA 58.844 47.619 0.00 0.00 0.00 3.18
1323 1886 1.550072 TGGATCTTCATCGTCAGCACA 59.450 47.619 0.00 0.00 0.00 4.57
1336 1899 0.647410 CAGCACAAAGATAGACGCCG 59.353 55.000 0.00 0.00 0.00 6.46
2181 10868 6.619744 CAAATCAACAAGGCAAAAAGGTTTT 58.380 32.000 0.00 0.00 0.00 2.43
2509 11197 0.532115 CATGTGGTAAGCCCCTTTGC 59.468 55.000 0.00 0.00 0.00 3.68
2710 11419 2.354805 CCAACAACTAGGGCTCCTACAC 60.355 54.545 0.00 0.00 34.61 2.90
2711 11420 1.569653 ACAACTAGGGCTCCTACACC 58.430 55.000 0.00 0.00 34.61 4.16
2712 11421 1.203262 ACAACTAGGGCTCCTACACCA 60.203 52.381 0.00 0.00 34.61 4.17
2713 11422 1.906574 CAACTAGGGCTCCTACACCAA 59.093 52.381 0.00 0.00 34.61 3.67
2714 11423 1.569653 ACTAGGGCTCCTACACCAAC 58.430 55.000 0.00 0.00 34.61 3.77
2715 11424 1.203262 ACTAGGGCTCCTACACCAACA 60.203 52.381 0.00 0.00 34.61 3.33
2716 11425 1.207329 CTAGGGCTCCTACACCAACAC 59.793 57.143 0.00 0.00 34.61 3.32
2717 11426 1.002502 GGGCTCCTACACCAACACC 60.003 63.158 0.00 0.00 0.00 4.16
2718 11427 1.489560 GGGCTCCTACACCAACACCT 61.490 60.000 0.00 0.00 0.00 4.00
2719 11428 1.272807 GGCTCCTACACCAACACCTA 58.727 55.000 0.00 0.00 0.00 3.08
2720 11429 1.626825 GGCTCCTACACCAACACCTAA 59.373 52.381 0.00 0.00 0.00 2.69
2721 11430 2.039348 GGCTCCTACACCAACACCTAAA 59.961 50.000 0.00 0.00 0.00 1.85
2722 11431 3.335579 GCTCCTACACCAACACCTAAAG 58.664 50.000 0.00 0.00 0.00 1.85
2723 11432 3.335579 CTCCTACACCAACACCTAAAGC 58.664 50.000 0.00 0.00 0.00 3.51
2724 11433 2.976882 TCCTACACCAACACCTAAAGCT 59.023 45.455 0.00 0.00 0.00 3.74
2725 11434 3.007614 TCCTACACCAACACCTAAAGCTC 59.992 47.826 0.00 0.00 0.00 4.09
2726 11435 2.271944 ACACCAACACCTAAAGCTCC 57.728 50.000 0.00 0.00 0.00 4.70
2727 11436 1.774856 ACACCAACACCTAAAGCTCCT 59.225 47.619 0.00 0.00 0.00 3.69
2728 11437 2.976882 ACACCAACACCTAAAGCTCCTA 59.023 45.455 0.00 0.00 0.00 2.94
2729 11438 3.244457 ACACCAACACCTAAAGCTCCTAC 60.244 47.826 0.00 0.00 0.00 3.18
2730 11439 2.976882 ACCAACACCTAAAGCTCCTACA 59.023 45.455 0.00 0.00 0.00 2.74
4849 13558 7.701924 TCTTCACTAAACAATTGCTTGTCTTTG 59.298 33.333 5.05 0.00 44.83 2.77
4985 13694 2.219458 CCTTCATATCAGCCAGCAGTG 58.781 52.381 0.00 0.00 0.00 3.66
6430 15220 8.186163 TGGTACTATCGTGTAATTAACTCTGTG 58.814 37.037 0.00 0.00 0.00 3.66
6431 15221 7.167136 GGTACTATCGTGTAATTAACTCTGTGC 59.833 40.741 0.00 0.00 0.00 4.57
6432 15222 6.040878 ACTATCGTGTAATTAACTCTGTGCC 58.959 40.000 0.00 0.00 0.00 5.01
6433 15223 3.592059 TCGTGTAATTAACTCTGTGCCC 58.408 45.455 0.00 0.00 0.00 5.36
6434 15224 3.007074 TCGTGTAATTAACTCTGTGCCCA 59.993 43.478 0.00 0.00 0.00 5.36
6435 15225 3.938963 CGTGTAATTAACTCTGTGCCCAT 59.061 43.478 0.00 0.00 0.00 4.00
6439 15229 2.380084 TTAACTCTGTGCCCATCGAC 57.620 50.000 0.00 0.00 0.00 4.20
6441 15231 1.532604 AACTCTGTGCCCATCGACGA 61.533 55.000 0.00 0.00 0.00 4.20
6447 15237 0.108992 GTGCCCATCGACGACACTAA 60.109 55.000 0.00 0.00 0.00 2.24
6453 15243 1.067425 CATCGACGACACTAACCCCAA 60.067 52.381 0.00 0.00 0.00 4.12
6502 15292 1.203441 TGTTCAGCCAGGATCCAGCT 61.203 55.000 20.50 20.50 37.32 4.24
6580 15374 1.037493 TCTGCCTCGTACAGTGTGTT 58.963 50.000 5.88 0.00 36.50 3.32
6673 15467 2.045926 ATTGAGGGTGACAGCGCC 60.046 61.111 2.29 0.00 44.14 6.53
6760 15554 1.450312 CATTGGAGGCCTGACGACC 60.450 63.158 12.00 4.89 0.00 4.79
6883 15683 4.582869 TCATGTCATGAAAGGAGTTCCTG 58.417 43.478 13.25 0.00 39.81 3.86
6938 15743 9.073475 TGCCTTTCTATGTTTTAGTAATGTGTT 57.927 29.630 0.00 0.00 0.00 3.32
6971 15776 4.211389 GCGATTCAGTTAATGTATTGCCG 58.789 43.478 0.96 0.00 39.17 5.69
6974 15779 5.006261 CGATTCAGTTAATGTATTGCCGTCA 59.994 40.000 0.00 0.00 0.00 4.35
6980 15785 7.170828 TCAGTTAATGTATTGCCGTCATATGTC 59.829 37.037 1.90 0.00 0.00 3.06
7000 15809 6.048732 TGTCCTAATGTGTATGAGCTCAAA 57.951 37.500 22.50 6.77 0.00 2.69
7001 15810 6.653020 TGTCCTAATGTGTATGAGCTCAAAT 58.347 36.000 22.50 7.90 0.00 2.32
7002 15811 6.539826 TGTCCTAATGTGTATGAGCTCAAATG 59.460 38.462 22.50 3.78 0.00 2.32
7003 15812 5.528690 TCCTAATGTGTATGAGCTCAAATGC 59.471 40.000 22.50 9.57 0.00 3.56
7022 15831 3.293311 GCTCAATGCATGTTCAACACT 57.707 42.857 0.00 0.00 42.31 3.55
7023 15832 3.645884 GCTCAATGCATGTTCAACACTT 58.354 40.909 0.00 0.00 42.31 3.16
7024 15833 4.797471 GCTCAATGCATGTTCAACACTTA 58.203 39.130 0.00 0.00 42.31 2.24
7025 15834 5.404946 GCTCAATGCATGTTCAACACTTAT 58.595 37.500 0.00 0.00 42.31 1.73
7060 15891 6.354858 GCACAAAGCTTAATAAGTTGCAAAC 58.645 36.000 0.00 0.00 43.98 2.93
7062 15893 7.776418 GCACAAAGCTTAATAAGTTGCAAACAG 60.776 37.037 0.00 0.00 45.34 3.16
7097 16034 2.668550 GCTTCAGTCGGCCGGTTT 60.669 61.111 27.83 8.35 0.00 3.27
7115 16052 5.163343 CCGGTTTGTTCCTCCTATCAGAATA 60.163 44.000 0.00 0.00 0.00 1.75
7126 16063 3.750130 CCTATCAGAATATGTGCCACTGC 59.250 47.826 0.00 0.00 38.26 4.40
7135 16072 2.888111 TGCCACTGCGCAAACAAA 59.112 50.000 13.05 0.00 41.78 2.83
7136 16073 1.216444 TGCCACTGCGCAAACAAAA 59.784 47.368 13.05 0.00 41.78 2.44
7137 16074 0.390340 TGCCACTGCGCAAACAAAAA 60.390 45.000 13.05 0.00 41.78 1.94
7171 16108 5.809464 TGTGCGTTATCTGAATTTATGCAG 58.191 37.500 0.00 0.00 0.00 4.41
7179 16116 5.178096 TCTGAATTTATGCAGGAGGTTGA 57.822 39.130 0.00 0.00 33.05 3.18
7249 16186 1.070758 CGCTAGGCCTCCATACATTGT 59.929 52.381 9.68 0.00 0.00 2.71
7253 16190 5.337250 CGCTAGGCCTCCATACATTGTAATA 60.337 44.000 9.68 0.00 0.00 0.98
7293 16230 4.514441 AGCATTTGTTGAGTGTCTCAGAAG 59.486 41.667 0.00 0.00 41.75 2.85
7304 16241 5.297547 AGTGTCTCAGAAGCAAAAATCGTA 58.702 37.500 0.00 0.00 0.00 3.43
7424 16594 3.735514 GCTTTTGGCTTGTTCGGTTAACA 60.736 43.478 8.10 0.00 46.41 2.41
7469 16639 1.872952 TGAACAGTGGAAGCATCAACG 59.127 47.619 0.00 0.00 34.43 4.10
7477 16651 5.050490 AGTGGAAGCATCAACGATATACAC 58.950 41.667 0.00 0.00 34.43 2.90
7550 16724 7.497595 TCACAAAAGGAAGTATCAGCGTATAT 58.502 34.615 0.00 0.00 0.00 0.86
7560 16734 2.473816 TCAGCGTATATGCAAGTCAGC 58.526 47.619 18.91 0.00 37.31 4.26
7581 16755 1.606668 CTCCTCTCGACCAGTATCAGC 59.393 57.143 0.00 0.00 0.00 4.26
7689 16863 4.899239 CCGGCGCCAGTCAGATCC 62.899 72.222 28.98 0.00 0.00 3.36
7707 16881 7.604164 GTCAGATCCGGTCAATATTTCATACAT 59.396 37.037 0.00 0.00 0.00 2.29
7736 16911 6.874134 CCACTATATATCTTTGGAGGTTTCGG 59.126 42.308 0.00 0.00 0.00 4.30
7739 16914 2.491675 ATCTTTGGAGGTTTCGGGTC 57.508 50.000 0.00 0.00 0.00 4.46
7748 16923 3.561503 GAGGTTTCGGGTCAAAAATTCG 58.438 45.455 0.00 0.00 0.00 3.34
7751 16926 3.561503 GTTTCGGGTCAAAAATTCGGAG 58.438 45.455 0.00 0.00 0.00 4.63
7752 16927 2.843401 TCGGGTCAAAAATTCGGAGA 57.157 45.000 0.00 0.00 0.00 3.71
7753 16928 2.695359 TCGGGTCAAAAATTCGGAGAG 58.305 47.619 0.00 0.00 38.43 3.20
7754 16929 2.300723 TCGGGTCAAAAATTCGGAGAGA 59.699 45.455 0.00 0.00 38.43 3.10
7755 16930 3.055385 TCGGGTCAAAAATTCGGAGAGAT 60.055 43.478 0.00 0.00 38.43 2.75
7756 16931 3.063997 CGGGTCAAAAATTCGGAGAGATG 59.936 47.826 0.00 0.00 38.43 2.90
7757 16932 3.181496 GGGTCAAAAATTCGGAGAGATGC 60.181 47.826 0.00 0.00 38.43 3.91
7758 16933 3.181496 GGTCAAAAATTCGGAGAGATGCC 60.181 47.826 0.00 0.00 38.43 4.40
7759 16934 3.440173 GTCAAAAATTCGGAGAGATGCCA 59.560 43.478 0.00 0.00 38.43 4.92
7760 16935 3.691118 TCAAAAATTCGGAGAGATGCCAG 59.309 43.478 0.00 0.00 38.43 4.85
7761 16936 3.356529 AAAATTCGGAGAGATGCCAGT 57.643 42.857 0.00 0.00 38.43 4.00
7762 16937 3.356529 AAATTCGGAGAGATGCCAGTT 57.643 42.857 0.00 0.00 38.43 3.16
7763 16938 2.322355 ATTCGGAGAGATGCCAGTTG 57.678 50.000 0.00 0.00 38.43 3.16
7764 16939 0.391661 TTCGGAGAGATGCCAGTTGC 60.392 55.000 0.00 0.00 38.43 4.17
7765 16940 2.169789 CGGAGAGATGCCAGTTGCG 61.170 63.158 0.00 0.00 45.60 4.85
7766 16941 2.467826 GGAGAGATGCCAGTTGCGC 61.468 63.158 0.00 0.00 45.60 6.09
7767 16942 2.437359 AGAGATGCCAGTTGCGCC 60.437 61.111 4.18 0.00 45.60 6.53
7768 16943 3.512516 GAGATGCCAGTTGCGCCC 61.513 66.667 4.18 0.00 45.60 6.13
7785 16960 2.858974 CCCACCCCCTGTCACCTT 60.859 66.667 0.00 0.00 0.00 3.50
7786 16961 2.436109 CCACCCCCTGTCACCTTG 59.564 66.667 0.00 0.00 0.00 3.61
7787 16962 2.282462 CACCCCCTGTCACCTTGC 60.282 66.667 0.00 0.00 0.00 4.01
7788 16963 2.450502 ACCCCCTGTCACCTTGCT 60.451 61.111 0.00 0.00 0.00 3.91
7789 16964 2.352805 CCCCCTGTCACCTTGCTC 59.647 66.667 0.00 0.00 0.00 4.26
7790 16965 2.352805 CCCCTGTCACCTTGCTCC 59.647 66.667 0.00 0.00 0.00 4.70
7791 16966 2.528818 CCCCTGTCACCTTGCTCCA 61.529 63.158 0.00 0.00 0.00 3.86
7792 16967 1.455849 CCCTGTCACCTTGCTCCAA 59.544 57.895 0.00 0.00 0.00 3.53
7793 16968 0.890996 CCCTGTCACCTTGCTCCAAC 60.891 60.000 0.00 0.00 0.00 3.77
7794 16969 0.890996 CCTGTCACCTTGCTCCAACC 60.891 60.000 0.00 0.00 0.00 3.77
7795 16970 0.890996 CTGTCACCTTGCTCCAACCC 60.891 60.000 0.00 0.00 0.00 4.11
7796 16971 1.352622 TGTCACCTTGCTCCAACCCT 61.353 55.000 0.00 0.00 0.00 4.34
7797 16972 0.606673 GTCACCTTGCTCCAACCCTC 60.607 60.000 0.00 0.00 0.00 4.30
7798 16973 1.303643 CACCTTGCTCCAACCCTCC 60.304 63.158 0.00 0.00 0.00 4.30
7799 16974 1.774217 ACCTTGCTCCAACCCTCCA 60.774 57.895 0.00 0.00 0.00 3.86
7800 16975 1.303643 CCTTGCTCCAACCCTCCAC 60.304 63.158 0.00 0.00 0.00 4.02
7801 16976 1.303643 CTTGCTCCAACCCTCCACC 60.304 63.158 0.00 0.00 0.00 4.61
7802 16977 2.771328 CTTGCTCCAACCCTCCACCC 62.771 65.000 0.00 0.00 0.00 4.61
7803 16978 4.048470 GCTCCAACCCTCCACCCC 62.048 72.222 0.00 0.00 0.00 4.95
7804 16979 3.339093 CTCCAACCCTCCACCCCC 61.339 72.222 0.00 0.00 0.00 5.40
7805 16980 4.209620 TCCAACCCTCCACCCCCA 62.210 66.667 0.00 0.00 0.00 4.96
7806 16981 2.946650 CCAACCCTCCACCCCCAT 60.947 66.667 0.00 0.00 0.00 4.00
7807 16982 2.683475 CAACCCTCCACCCCCATC 59.317 66.667 0.00 0.00 0.00 3.51
7808 16983 2.617215 AACCCTCCACCCCCATCC 60.617 66.667 0.00 0.00 0.00 3.51
7809 16984 3.222863 AACCCTCCACCCCCATCCT 62.223 63.158 0.00 0.00 0.00 3.24
7810 16985 2.774351 CCCTCCACCCCCATCCTC 60.774 72.222 0.00 0.00 0.00 3.71
7811 16986 2.774351 CCTCCACCCCCATCCTCC 60.774 72.222 0.00 0.00 0.00 4.30
7812 16987 2.774351 CTCCACCCCCATCCTCCC 60.774 72.222 0.00 0.00 0.00 4.30
7813 16988 3.300962 TCCACCCCCATCCTCCCT 61.301 66.667 0.00 0.00 0.00 4.20
7814 16989 2.287194 CCACCCCCATCCTCCCTT 60.287 66.667 0.00 0.00 0.00 3.95
7815 16990 2.693871 CCACCCCCATCCTCCCTTG 61.694 68.421 0.00 0.00 0.00 3.61
7816 16991 1.619363 CACCCCCATCCTCCCTTGA 60.619 63.158 0.00 0.00 0.00 3.02
7817 16992 0.995675 CACCCCCATCCTCCCTTGAT 60.996 60.000 0.00 0.00 0.00 2.57
7818 16993 0.699231 ACCCCCATCCTCCCTTGATC 60.699 60.000 0.00 0.00 0.00 2.92
7819 16994 0.402566 CCCCCATCCTCCCTTGATCT 60.403 60.000 0.00 0.00 0.00 2.75
7820 16995 0.769873 CCCCATCCTCCCTTGATCTG 59.230 60.000 0.00 0.00 0.00 2.90
7821 16996 0.769873 CCCATCCTCCCTTGATCTGG 59.230 60.000 0.00 0.00 0.00 3.86
7822 16997 1.696965 CCCATCCTCCCTTGATCTGGA 60.697 57.143 6.86 3.54 0.00 3.86
7823 16998 1.419387 CCATCCTCCCTTGATCTGGAC 59.581 57.143 6.86 0.00 0.00 4.02
7824 16999 1.069823 CATCCTCCCTTGATCTGGACG 59.930 57.143 6.86 0.00 0.00 4.79
7825 17000 0.041238 TCCTCCCTTGATCTGGACGT 59.959 55.000 6.86 0.00 0.00 4.34
7826 17001 0.461961 CCTCCCTTGATCTGGACGTC 59.538 60.000 7.13 7.13 0.00 4.34
7827 17002 1.479709 CTCCCTTGATCTGGACGTCT 58.520 55.000 16.46 0.00 0.00 4.18
7828 17003 2.656002 CTCCCTTGATCTGGACGTCTA 58.344 52.381 16.46 8.77 0.00 2.59
7829 17004 2.621055 CTCCCTTGATCTGGACGTCTAG 59.379 54.545 21.86 21.86 0.00 2.43
7830 17005 2.241430 TCCCTTGATCTGGACGTCTAGA 59.759 50.000 30.39 30.39 37.86 2.43
7831 17006 2.621055 CCCTTGATCTGGACGTCTAGAG 59.379 54.545 31.21 19.70 36.90 2.43
7832 17007 2.034053 CCTTGATCTGGACGTCTAGAGC 59.966 54.545 32.47 32.47 39.80 4.09
7833 17008 2.719531 TGATCTGGACGTCTAGAGCT 57.280 50.000 36.13 22.72 40.01 4.09
7834 17009 2.566913 TGATCTGGACGTCTAGAGCTC 58.433 52.381 36.13 28.01 40.01 4.09
7835 17010 1.877443 GATCTGGACGTCTAGAGCTCC 59.123 57.143 32.04 19.03 37.00 4.70
7836 17011 0.618981 TCTGGACGTCTAGAGCTCCA 59.381 55.000 25.78 14.90 0.00 3.86
7837 17012 1.004394 TCTGGACGTCTAGAGCTCCAA 59.996 52.381 25.78 3.88 32.30 3.53
7838 17013 1.819288 CTGGACGTCTAGAGCTCCAAA 59.181 52.381 23.27 0.00 32.30 3.28
7839 17014 2.428890 CTGGACGTCTAGAGCTCCAAAT 59.571 50.000 23.27 0.00 32.30 2.32
7840 17015 3.628008 TGGACGTCTAGAGCTCCAAATA 58.372 45.455 16.46 0.00 29.50 1.40
7841 17016 3.632604 TGGACGTCTAGAGCTCCAAATAG 59.367 47.826 16.46 5.73 29.50 1.73
7842 17017 3.633065 GGACGTCTAGAGCTCCAAATAGT 59.367 47.826 16.46 4.01 0.00 2.12
7843 17018 4.498345 GGACGTCTAGAGCTCCAAATAGTG 60.498 50.000 16.46 5.80 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 181 3.758133 GATCTCCTCCAGGGCCCGA 62.758 68.421 18.44 7.81 35.41 5.14
246 250 4.419957 TCGTCGTCGTCGTCGCTG 62.420 66.667 15.28 2.44 44.86 5.18
247 251 4.421446 GTCGTCGTCGTCGTCGCT 62.421 66.667 15.28 0.00 44.86 4.93
249 253 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
250 254 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
251 255 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
293 297 4.364686 ATCCCTCCCCCGGTTGGT 62.365 66.667 0.00 0.00 0.00 3.67
294 298 3.809013 CATCCCTCCCCCGGTTGG 61.809 72.222 0.00 0.00 0.00 3.77
295 299 4.506255 GCATCCCTCCCCCGGTTG 62.506 72.222 0.00 0.00 0.00 3.77
300 304 4.201122 CTGCTGCATCCCTCCCCC 62.201 72.222 1.31 0.00 0.00 5.40
301 305 4.201122 CCTGCTGCATCCCTCCCC 62.201 72.222 1.31 0.00 0.00 4.81
302 306 4.201122 CCCTGCTGCATCCCTCCC 62.201 72.222 1.31 0.00 0.00 4.30
303 307 3.092511 TCCCTGCTGCATCCCTCC 61.093 66.667 1.31 0.00 0.00 4.30
304 308 2.191641 GTCCCTGCTGCATCCCTC 59.808 66.667 1.31 0.00 0.00 4.30
305 309 3.790437 CGTCCCTGCTGCATCCCT 61.790 66.667 1.31 0.00 0.00 4.20
306 310 4.864334 CCGTCCCTGCTGCATCCC 62.864 72.222 1.31 0.00 0.00 3.85
343 347 4.511443 ATCGTCGTCGTCGTCGCC 62.511 66.667 15.28 0.00 44.86 5.54
344 348 2.944662 ATCATCGTCGTCGTCGTCGC 62.945 60.000 15.28 2.24 44.86 5.19
345 349 1.012562 ATCATCGTCGTCGTCGTCG 60.013 57.895 14.18 14.18 46.06 5.12
346 350 0.025898 TCATCATCGTCGTCGTCGTC 59.974 55.000 11.41 0.00 38.33 4.20
347 351 0.247576 GTCATCATCGTCGTCGTCGT 60.248 55.000 11.41 0.00 38.33 4.34
348 352 1.247261 CGTCATCATCGTCGTCGTCG 61.247 60.000 5.50 5.50 38.33 5.12
349 353 0.025898 TCGTCATCATCGTCGTCGTC 59.974 55.000 1.33 0.00 38.33 4.20
350 354 0.247576 GTCGTCATCATCGTCGTCGT 60.248 55.000 1.33 0.00 38.33 4.34
351 355 1.247261 CGTCGTCATCATCGTCGTCG 61.247 60.000 0.00 0.00 35.85 5.12
352 356 0.025898 TCGTCGTCATCATCGTCGTC 59.974 55.000 0.00 0.00 39.70 4.20
353 357 0.247576 GTCGTCGTCATCATCGTCGT 60.248 55.000 0.00 0.00 39.70 4.34
354 358 1.247261 CGTCGTCGTCATCATCGTCG 61.247 60.000 0.00 0.00 39.95 5.12
355 359 0.924363 CCGTCGTCGTCATCATCGTC 60.924 60.000 0.71 0.00 35.01 4.20
356 360 1.062047 CCGTCGTCGTCATCATCGT 59.938 57.895 0.71 0.00 35.01 3.73
357 361 2.286559 GCCGTCGTCGTCATCATCG 61.287 63.158 0.71 0.00 35.01 3.84
358 362 2.286559 CGCCGTCGTCGTCATCATC 61.287 63.158 0.71 0.00 35.01 2.92
359 363 2.277949 CGCCGTCGTCGTCATCAT 60.278 61.111 0.71 0.00 35.01 2.45
360 364 4.470170 CCGCCGTCGTCGTCATCA 62.470 66.667 0.71 0.00 35.01 3.07
361 365 4.471726 ACCGCCGTCGTCGTCATC 62.472 66.667 0.71 0.00 35.01 2.92
362 366 4.771356 CACCGCCGTCGTCGTCAT 62.771 66.667 0.71 0.00 35.01 3.06
366 370 3.792047 TAGTCACCGCCGTCGTCG 61.792 66.667 0.00 0.00 0.00 5.12
367 371 2.202401 GTAGTCACCGCCGTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
368 372 2.979676 TGTAGTCACCGCCGTCGT 60.980 61.111 0.00 0.00 0.00 4.34
369 373 2.503375 GTGTAGTCACCGCCGTCG 60.503 66.667 0.00 0.00 38.51 5.12
370 374 2.503375 CGTGTAGTCACCGCCGTC 60.503 66.667 0.00 0.00 41.09 4.79
371 375 4.712425 GCGTGTAGTCACCGCCGT 62.712 66.667 0.00 0.00 41.09 5.68
374 378 4.712425 ACCGCGTGTAGTCACCGC 62.712 66.667 4.92 0.00 41.09 5.68
375 379 2.049802 AACCGCGTGTAGTCACCG 60.050 61.111 4.92 0.00 41.09 4.94
376 380 0.523072 TAGAACCGCGTGTAGTCACC 59.477 55.000 4.92 0.00 41.09 4.02
377 381 1.069022 TGTAGAACCGCGTGTAGTCAC 60.069 52.381 4.92 0.88 40.79 3.67
378 382 1.198408 CTGTAGAACCGCGTGTAGTCA 59.802 52.381 4.92 0.00 0.00 3.41
379 383 1.892468 CTGTAGAACCGCGTGTAGTC 58.108 55.000 4.92 0.00 0.00 2.59
380 384 0.109412 GCTGTAGAACCGCGTGTAGT 60.109 55.000 4.92 0.00 0.00 2.73
381 385 0.801067 GGCTGTAGAACCGCGTGTAG 60.801 60.000 4.92 0.00 0.00 2.74
382 386 1.213537 GGCTGTAGAACCGCGTGTA 59.786 57.895 4.92 0.00 0.00 2.90
383 387 2.048503 GGCTGTAGAACCGCGTGT 60.049 61.111 4.92 0.00 0.00 4.49
384 388 1.805945 GAGGCTGTAGAACCGCGTG 60.806 63.158 4.92 0.00 0.00 5.34
385 389 2.572284 GAGGCTGTAGAACCGCGT 59.428 61.111 4.92 0.00 0.00 6.01
386 390 2.202756 GGAGGCTGTAGAACCGCG 60.203 66.667 0.00 0.00 0.00 6.46
387 391 1.142097 GAGGAGGCTGTAGAACCGC 59.858 63.158 0.00 0.00 0.00 5.68
388 392 1.433879 CGAGGAGGCTGTAGAACCG 59.566 63.158 0.00 0.00 0.00 4.44
389 393 1.817209 CCGAGGAGGCTGTAGAACC 59.183 63.158 0.00 0.00 0.00 3.62
399 403 0.105039 GGTTCTACATGCCGAGGAGG 59.895 60.000 0.00 0.00 44.97 4.30
400 404 3.669354 GGTTCTACATGCCGAGGAG 57.331 57.895 0.00 0.00 0.00 3.69
406 410 2.461110 CCACGCGGTTCTACATGCC 61.461 63.158 12.47 0.00 0.00 4.40
407 411 2.461110 CCCACGCGGTTCTACATGC 61.461 63.158 12.47 0.00 0.00 4.06
408 412 2.461110 GCCCACGCGGTTCTACATG 61.461 63.158 12.47 0.00 0.00 3.21
409 413 2.125269 GCCCACGCGGTTCTACAT 60.125 61.111 12.47 0.00 0.00 2.29
446 450 3.711059 TACCCTCGCCGTCTCCCTC 62.711 68.421 0.00 0.00 0.00 4.30
447 451 3.717924 CTACCCTCGCCGTCTCCCT 62.718 68.421 0.00 0.00 0.00 4.20
448 452 3.217743 CTACCCTCGCCGTCTCCC 61.218 72.222 0.00 0.00 0.00 4.30
449 453 3.902086 GCTACCCTCGCCGTCTCC 61.902 72.222 0.00 0.00 0.00 3.71
450 454 3.902086 GGCTACCCTCGCCGTCTC 61.902 72.222 0.00 0.00 37.87 3.36
458 462 3.603671 CTACCGCGGGCTACCCTC 61.604 72.222 31.76 0.00 42.67 4.30
459 463 3.970746 AACTACCGCGGGCTACCCT 62.971 63.158 31.76 9.01 42.67 4.34
460 464 2.526450 AAAACTACCGCGGGCTACCC 62.526 60.000 31.76 0.00 41.09 3.69
461 465 0.674581 AAAAACTACCGCGGGCTACC 60.675 55.000 31.76 0.00 0.00 3.18
462 466 2.845019 AAAAACTACCGCGGGCTAC 58.155 52.632 31.76 0.00 0.00 3.58
496 500 9.377383 CGAGTTCGTTCAAACTTAAACATATTT 57.623 29.630 0.00 0.00 39.55 1.40
497 501 7.532884 GCGAGTTCGTTCAAACTTAAACATATT 59.467 33.333 3.27 0.00 39.55 1.28
498 502 7.013529 GCGAGTTCGTTCAAACTTAAACATAT 58.986 34.615 3.27 0.00 39.55 1.78
499 503 6.357198 GCGAGTTCGTTCAAACTTAAACATA 58.643 36.000 3.27 0.00 39.55 2.29
500 504 5.202640 GCGAGTTCGTTCAAACTTAAACAT 58.797 37.500 3.27 0.00 39.55 2.71
501 505 4.494526 GGCGAGTTCGTTCAAACTTAAACA 60.495 41.667 3.27 0.00 39.55 2.83
502 506 3.964347 GGCGAGTTCGTTCAAACTTAAAC 59.036 43.478 3.27 0.00 39.55 2.01
503 507 3.302610 CGGCGAGTTCGTTCAAACTTAAA 60.303 43.478 0.00 0.00 39.55 1.52
504 508 2.219216 CGGCGAGTTCGTTCAAACTTAA 59.781 45.455 0.00 0.00 39.55 1.85
505 509 1.788308 CGGCGAGTTCGTTCAAACTTA 59.212 47.619 0.00 0.00 39.55 2.24
506 510 0.580104 CGGCGAGTTCGTTCAAACTT 59.420 50.000 0.00 0.00 39.55 2.66
507 511 0.249155 TCGGCGAGTTCGTTCAAACT 60.249 50.000 4.99 0.00 42.10 2.66
508 512 0.788391 ATCGGCGAGTTCGTTCAAAC 59.212 50.000 17.22 0.00 42.22 2.93
509 513 0.787787 CATCGGCGAGTTCGTTCAAA 59.212 50.000 17.22 0.00 42.22 2.69
510 514 1.623081 GCATCGGCGAGTTCGTTCAA 61.623 55.000 17.22 0.00 42.22 2.69
511 515 2.092291 GCATCGGCGAGTTCGTTCA 61.092 57.895 17.22 0.00 42.22 3.18
512 516 2.695646 GCATCGGCGAGTTCGTTC 59.304 61.111 17.22 0.00 42.22 3.95
522 526 1.908065 AATTTAACGCAAGCATCGGC 58.092 45.000 0.00 0.00 45.62 5.54
523 527 5.092781 ACTTAAATTTAACGCAAGCATCGG 58.907 37.500 6.54 0.00 45.62 4.18
524 528 5.053932 CGACTTAAATTTAACGCAAGCATCG 60.054 40.000 6.54 2.35 45.62 3.84
525 529 5.793457 ACGACTTAAATTTAACGCAAGCATC 59.207 36.000 16.50 1.50 45.62 3.91
526 530 5.695818 ACGACTTAAATTTAACGCAAGCAT 58.304 33.333 16.50 0.00 45.62 3.79
527 531 5.098218 ACGACTTAAATTTAACGCAAGCA 57.902 34.783 16.50 0.00 45.62 3.91
528 532 6.428673 AAACGACTTAAATTTAACGCAAGC 57.571 33.333 16.50 3.01 45.62 4.01
530 534 7.111768 GCAAAAACGACTTAAATTTAACGCAA 58.888 30.769 16.50 0.00 0.00 4.85
531 535 6.558071 CGCAAAAACGACTTAAATTTAACGCA 60.558 34.615 16.50 0.00 34.06 5.24
532 536 5.770255 CGCAAAAACGACTTAAATTTAACGC 59.230 36.000 16.50 7.64 34.06 4.84
533 537 5.770255 GCGCAAAAACGACTTAAATTTAACG 59.230 36.000 15.49 15.49 34.06 3.18
534 538 6.060150 GGCGCAAAAACGACTTAAATTTAAC 58.940 36.000 10.83 0.00 38.32 2.01
535 539 5.108330 CGGCGCAAAAACGACTTAAATTTAA 60.108 36.000 10.83 10.16 39.56 1.52
536 540 4.379204 CGGCGCAAAAACGACTTAAATTTA 59.621 37.500 10.83 0.00 39.56 1.40
537 541 3.180782 CGGCGCAAAAACGACTTAAATTT 59.819 39.130 10.83 0.00 39.56 1.82
538 542 2.722116 CGGCGCAAAAACGACTTAAATT 59.278 40.909 10.83 0.00 39.56 1.82
539 543 2.287129 ACGGCGCAAAAACGACTTAAAT 60.287 40.909 10.83 0.00 39.56 1.40
540 544 1.063764 ACGGCGCAAAAACGACTTAAA 59.936 42.857 10.83 0.00 39.56 1.52
541 545 0.656785 ACGGCGCAAAAACGACTTAA 59.343 45.000 10.83 0.00 39.56 1.85
542 546 1.495878 TACGGCGCAAAAACGACTTA 58.504 45.000 10.83 0.00 39.56 2.24
543 547 0.869730 ATACGGCGCAAAAACGACTT 59.130 45.000 10.83 0.00 39.56 3.01
544 548 0.869730 AATACGGCGCAAAAACGACT 59.130 45.000 10.83 0.00 39.56 4.18
545 549 1.677208 AAATACGGCGCAAAAACGAC 58.323 45.000 10.83 0.00 37.85 4.34
546 550 3.059051 AGTTAAATACGGCGCAAAAACGA 60.059 39.130 10.83 0.00 34.06 3.85
547 551 3.227948 AGTTAAATACGGCGCAAAAACG 58.772 40.909 10.83 5.43 0.00 3.60
548 552 5.564213 AAAGTTAAATACGGCGCAAAAAC 57.436 34.783 10.83 5.70 0.00 2.43
549 553 6.585389 AAAAAGTTAAATACGGCGCAAAAA 57.415 29.167 10.83 0.00 0.00 1.94
570 574 0.873721 GCGCCCACGGTTAGTAAAAA 59.126 50.000 0.00 0.00 40.57 1.94
571 575 0.954938 GGCGCCCACGGTTAGTAAAA 60.955 55.000 18.11 0.00 40.57 1.52
572 576 1.375780 GGCGCCCACGGTTAGTAAA 60.376 57.895 18.11 0.00 40.57 2.01
573 577 2.265424 GGCGCCCACGGTTAGTAA 59.735 61.111 18.11 0.00 40.57 2.24
574 578 4.132441 CGGCGCCCACGGTTAGTA 62.132 66.667 23.46 0.00 40.57 1.82
589 593 4.530857 GATGTCCCCCAGTCGCGG 62.531 72.222 6.13 0.00 0.00 6.46
590 594 3.770040 TGATGTCCCCCAGTCGCG 61.770 66.667 0.00 0.00 0.00 5.87
591 595 2.125106 GTGATGTCCCCCAGTCGC 60.125 66.667 0.00 0.00 0.00 5.19
592 596 2.184322 CGTGATGTCCCCCAGTCG 59.816 66.667 0.00 0.00 0.00 4.18
593 597 2.125106 GCGTGATGTCCCCCAGTC 60.125 66.667 0.00 0.00 0.00 3.51
594 598 3.717294 GGCGTGATGTCCCCCAGT 61.717 66.667 0.00 0.00 0.00 4.00
595 599 4.489771 GGGCGTGATGTCCCCCAG 62.490 72.222 0.00 0.00 35.79 4.45
600 604 2.120909 CATTGGGGGCGTGATGTCC 61.121 63.158 0.00 0.00 43.80 4.02
601 605 2.774799 GCATTGGGGGCGTGATGTC 61.775 63.158 0.00 0.00 0.00 3.06
602 606 2.755469 GCATTGGGGGCGTGATGT 60.755 61.111 0.00 0.00 0.00 3.06
612 616 2.102161 GCTAAACCGCGCATTGGG 59.898 61.111 8.75 2.12 0.00 4.12
637 641 4.789123 AAAATCGTCCCCGGGGCG 62.789 66.667 36.17 36.17 36.60 6.13
638 642 2.361992 AAAAATCGTCCCCGGGGC 60.362 61.111 36.68 27.46 34.68 5.80
660 664 4.101448 CCGTTGGCCCTCCAGGAG 62.101 72.222 9.90 9.90 44.53 3.69
677 681 1.475930 GGTTCTAAGGGCATCTCCAGC 60.476 57.143 0.00 0.00 36.21 4.85
678 682 1.202580 CGGTTCTAAGGGCATCTCCAG 60.203 57.143 0.00 0.00 36.21 3.86
679 683 0.830648 CGGTTCTAAGGGCATCTCCA 59.169 55.000 0.00 0.00 36.21 3.86
680 684 0.533085 GCGGTTCTAAGGGCATCTCC 60.533 60.000 0.00 0.00 0.00 3.71
681 685 0.876342 CGCGGTTCTAAGGGCATCTC 60.876 60.000 0.00 0.00 0.00 2.75
682 686 1.144057 CGCGGTTCTAAGGGCATCT 59.856 57.895 0.00 0.00 0.00 2.90
683 687 0.249911 ATCGCGGTTCTAAGGGCATC 60.250 55.000 6.13 0.00 0.00 3.91
684 688 1.045407 TATCGCGGTTCTAAGGGCAT 58.955 50.000 6.13 0.00 0.00 4.40
685 689 0.103572 GTATCGCGGTTCTAAGGGCA 59.896 55.000 6.13 0.00 0.00 5.36
686 690 0.103572 TGTATCGCGGTTCTAAGGGC 59.896 55.000 6.13 0.00 0.00 5.19
687 691 2.814280 ATGTATCGCGGTTCTAAGGG 57.186 50.000 6.13 0.00 0.00 3.95
688 692 3.057456 AGCTATGTATCGCGGTTCTAAGG 60.057 47.826 6.13 0.00 0.00 2.69
689 693 4.083217 AGAGCTATGTATCGCGGTTCTAAG 60.083 45.833 6.13 0.00 0.00 2.18
690 694 3.819337 AGAGCTATGTATCGCGGTTCTAA 59.181 43.478 6.13 0.00 0.00 2.10
691 695 3.188667 CAGAGCTATGTATCGCGGTTCTA 59.811 47.826 6.13 0.00 0.00 2.10
692 696 2.030717 CAGAGCTATGTATCGCGGTTCT 60.031 50.000 6.13 0.00 0.00 3.01
693 697 2.287668 ACAGAGCTATGTATCGCGGTTC 60.288 50.000 13.36 0.00 0.00 3.62
769 788 0.512518 TGCTCGTCGCTTGTTGATTG 59.487 50.000 0.00 0.00 40.11 2.67
808 831 3.064545 TCGAAGACTAGGTAAACGCTAGC 59.935 47.826 4.06 4.06 0.00 3.42
1030 1584 2.111251 GAAGCCCCCGGTCATAGC 59.889 66.667 0.00 0.00 0.00 2.97
1113 1676 1.687123 CCGTCGGAGAAATAGATGGGT 59.313 52.381 4.91 0.00 39.69 4.51
1197 1760 4.918201 GAAGGATCCAGCGGGCGG 62.918 72.222 15.82 0.00 0.00 6.13
1198 1761 3.798954 GAGAAGGATCCAGCGGGCG 62.799 68.421 15.82 0.00 0.00 6.13
1199 1762 2.110006 GAGAAGGATCCAGCGGGC 59.890 66.667 15.82 0.00 0.00 6.13
1210 1773 2.125912 CTCCACGCCGTGAGAAGG 60.126 66.667 20.57 0.66 35.23 3.46
1302 1865 2.200067 GTGCTGACGATGAAGATCCAG 58.800 52.381 0.00 0.00 0.00 3.86
1323 1886 0.103208 CCTCAGCGGCGTCTATCTTT 59.897 55.000 9.37 0.00 0.00 2.52
1349 1912 0.179004 TTCCACCATGTCAAAGGCGT 60.179 50.000 0.00 0.00 0.00 5.68
2509 11197 9.390795 CAGAAACATCAAAATGAAGAACTAGTG 57.609 33.333 0.00 0.00 36.67 2.74
2710 11419 3.335579 GTGTAGGAGCTTTAGGTGTTGG 58.664 50.000 0.00 0.00 0.00 3.77
2711 11420 3.244422 TGGTGTAGGAGCTTTAGGTGTTG 60.244 47.826 0.00 0.00 0.00 3.33
2712 11421 2.976882 TGGTGTAGGAGCTTTAGGTGTT 59.023 45.455 0.00 0.00 0.00 3.32
2713 11422 2.616524 TGGTGTAGGAGCTTTAGGTGT 58.383 47.619 0.00 0.00 0.00 4.16
2714 11423 3.244422 TGTTGGTGTAGGAGCTTTAGGTG 60.244 47.826 0.00 0.00 0.00 4.00
2715 11424 2.976882 TGTTGGTGTAGGAGCTTTAGGT 59.023 45.455 0.00 0.00 0.00 3.08
2716 11425 3.335579 GTGTTGGTGTAGGAGCTTTAGG 58.664 50.000 0.00 0.00 0.00 2.69
2717 11426 3.244422 TGGTGTTGGTGTAGGAGCTTTAG 60.244 47.826 0.00 0.00 0.00 1.85
2718 11427 2.706723 TGGTGTTGGTGTAGGAGCTTTA 59.293 45.455 0.00 0.00 0.00 1.85
2719 11428 1.493022 TGGTGTTGGTGTAGGAGCTTT 59.507 47.619 0.00 0.00 0.00 3.51
2720 11429 1.136828 TGGTGTTGGTGTAGGAGCTT 58.863 50.000 0.00 0.00 0.00 3.74
2721 11430 1.072331 CTTGGTGTTGGTGTAGGAGCT 59.928 52.381 0.00 0.00 0.00 4.09
2722 11431 1.071699 TCTTGGTGTTGGTGTAGGAGC 59.928 52.381 0.00 0.00 0.00 4.70
2723 11432 2.872038 GCTCTTGGTGTTGGTGTAGGAG 60.872 54.545 0.00 0.00 0.00 3.69
2724 11433 1.071699 GCTCTTGGTGTTGGTGTAGGA 59.928 52.381 0.00 0.00 0.00 2.94
2725 11434 1.072331 AGCTCTTGGTGTTGGTGTAGG 59.928 52.381 0.00 0.00 0.00 3.18
2726 11435 2.146342 CAGCTCTTGGTGTTGGTGTAG 58.854 52.381 0.00 0.00 36.97 2.74
2727 11436 1.813862 GCAGCTCTTGGTGTTGGTGTA 60.814 52.381 0.00 0.00 43.05 2.90
2728 11437 1.103398 GCAGCTCTTGGTGTTGGTGT 61.103 55.000 0.00 0.00 43.05 4.16
2729 11438 0.820891 AGCAGCTCTTGGTGTTGGTG 60.821 55.000 0.00 0.00 43.05 4.17
2730 11439 0.536006 GAGCAGCTCTTGGTGTTGGT 60.536 55.000 15.78 0.00 43.05 3.67
4849 13558 6.372659 TCCAGAACTTGAAGTTGAAGCATATC 59.627 38.462 16.25 0.00 38.80 1.63
6430 15220 0.804933 GGTTAGTGTCGTCGATGGGC 60.805 60.000 4.48 0.00 0.00 5.36
6431 15221 0.179119 GGGTTAGTGTCGTCGATGGG 60.179 60.000 4.48 0.00 0.00 4.00
6432 15222 0.179119 GGGGTTAGTGTCGTCGATGG 60.179 60.000 4.48 0.00 0.00 3.51
6433 15223 0.528924 TGGGGTTAGTGTCGTCGATG 59.471 55.000 0.00 0.00 0.00 3.84
6434 15224 1.203994 CTTGGGGTTAGTGTCGTCGAT 59.796 52.381 0.00 0.00 0.00 3.59
6435 15225 0.599558 CTTGGGGTTAGTGTCGTCGA 59.400 55.000 0.00 0.00 0.00 4.20
6439 15229 1.804748 GAAAGCTTGGGGTTAGTGTCG 59.195 52.381 0.00 0.00 32.43 4.35
6441 15231 3.222603 CAAGAAAGCTTGGGGTTAGTGT 58.777 45.455 0.00 0.00 46.13 3.55
6453 15243 1.239347 GCCGACTTTCCAAGAAAGCT 58.761 50.000 15.25 4.88 0.00 3.74
6462 15252 0.458716 CTTCTCCTCGCCGACTTTCC 60.459 60.000 0.00 0.00 0.00 3.13
6467 15257 2.202676 CAGCTTCTCCTCGCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
6502 15292 4.521075 GCGCTTACATGCCTCTCA 57.479 55.556 0.00 0.00 0.00 3.27
6580 15374 0.250684 TGCTGTCGCCCTCAATGAAA 60.251 50.000 0.00 0.00 34.43 2.69
6601 15395 1.675801 CTTGAGCTCCTGACCAGCA 59.324 57.895 12.15 0.00 39.56 4.41
6602 15396 1.078567 CCTTGAGCTCCTGACCAGC 60.079 63.158 12.15 0.00 37.12 4.85
6603 15397 0.689623 AACCTTGAGCTCCTGACCAG 59.310 55.000 12.15 0.00 0.00 4.00
6604 15398 0.397941 CAACCTTGAGCTCCTGACCA 59.602 55.000 12.15 0.00 0.00 4.02
6605 15399 0.687354 TCAACCTTGAGCTCCTGACC 59.313 55.000 12.15 0.00 32.50 4.02
6606 15400 2.091852 CTCAACCTTGAGCTCCTGAC 57.908 55.000 12.15 0.00 46.97 3.51
6615 15409 1.371183 CTGTCGCCCTCAACCTTGA 59.629 57.895 0.00 0.00 35.57 3.02
6673 15467 3.997064 CTCCTTGCGCTCCTGACCG 62.997 68.421 9.73 0.00 0.00 4.79
6684 15478 0.606673 AAAGCGTCCCTTCTCCTTGC 60.607 55.000 0.00 0.00 31.99 4.01
6772 15566 4.202182 GGCACTTCATAGTATTGTACCCGA 60.202 45.833 0.00 0.00 31.96 5.14
6778 15572 5.189736 TCCTTCAGGCACTTCATAGTATTGT 59.810 40.000 0.00 0.00 34.60 2.71
6883 15683 7.820044 TCACAACCAAGTGAAAATTAAACAC 57.180 32.000 0.00 0.00 44.92 3.32
6971 15776 7.382110 AGCTCATACACATTAGGACATATGAC 58.618 38.462 10.38 2.65 0.00 3.06
6974 15779 7.544804 TGAGCTCATACACATTAGGACATAT 57.455 36.000 13.74 0.00 0.00 1.78
6980 15785 5.530171 AGCATTTGAGCTCATACACATTAGG 59.470 40.000 19.04 0.00 42.18 2.69
7002 15811 3.293311 AGTGTTGAACATGCATTGAGC 57.707 42.857 0.00 0.00 45.96 4.26
7003 15812 7.878477 AAATAAGTGTTGAACATGCATTGAG 57.122 32.000 0.00 0.00 0.00 3.02
7060 15891 2.345760 GCATCCCCAACACTGCCTG 61.346 63.158 0.00 0.00 0.00 4.85
7062 15893 2.036256 AGCATCCCCAACACTGCC 59.964 61.111 0.00 0.00 35.21 4.85
7063 15894 2.998279 GCAGCATCCCCAACACTGC 61.998 63.158 0.00 0.00 45.95 4.40
7072 15903 1.817099 CCGACTGAAGCAGCATCCC 60.817 63.158 0.00 0.00 34.37 3.85
7097 16034 5.221722 GGCACATATTCTGATAGGAGGAACA 60.222 44.000 0.00 0.00 0.00 3.18
7115 16052 2.014064 TTGTTTGCGCAGTGGCACAT 62.014 50.000 21.41 1.78 43.82 3.21
7143 16080 9.055248 GCATAAATTCAGATAACGCACATATTC 57.945 33.333 0.00 0.00 0.00 1.75
7144 16081 8.567104 TGCATAAATTCAGATAACGCACATATT 58.433 29.630 0.00 0.00 0.00 1.28
7145 16082 8.098220 TGCATAAATTCAGATAACGCACATAT 57.902 30.769 0.00 0.00 0.00 1.78
7146 16083 7.307930 CCTGCATAAATTCAGATAACGCACATA 60.308 37.037 0.00 0.00 32.26 2.29
7147 16084 6.375945 TGCATAAATTCAGATAACGCACAT 57.624 33.333 0.00 0.00 0.00 3.21
7148 16085 5.220835 CCTGCATAAATTCAGATAACGCACA 60.221 40.000 0.00 0.00 32.26 4.57
7149 16086 5.007626 TCCTGCATAAATTCAGATAACGCAC 59.992 40.000 0.00 0.00 32.26 5.34
7150 16087 5.122519 TCCTGCATAAATTCAGATAACGCA 58.877 37.500 0.00 0.00 32.26 5.24
7151 16088 5.334414 CCTCCTGCATAAATTCAGATAACGC 60.334 44.000 0.00 0.00 32.26 4.84
7152 16089 5.760253 ACCTCCTGCATAAATTCAGATAACG 59.240 40.000 0.00 0.00 32.26 3.18
7156 16093 5.591877 GTCAACCTCCTGCATAAATTCAGAT 59.408 40.000 0.00 0.00 32.26 2.90
7171 16108 1.815003 CAGCTTTCATGGTCAACCTCC 59.185 52.381 0.10 0.00 36.82 4.30
7179 16116 1.278985 TCATCCGACAGCTTTCATGGT 59.721 47.619 0.02 0.00 0.00 3.55
7249 16186 7.695480 TGCTTGGATGTTAACAGCTTTATTA 57.305 32.000 22.10 3.94 31.98 0.98
7253 16190 5.473066 AATGCTTGGATGTTAACAGCTTT 57.527 34.783 22.10 15.38 31.98 3.51
7293 16230 7.302524 TGAGGAAGTATTGTTACGATTTTTGC 58.697 34.615 0.00 0.00 33.32 3.68
7304 16241 9.574516 AAGAAAAGTACATGAGGAAGTATTGTT 57.425 29.630 0.00 0.00 0.00 2.83
7363 16531 2.429930 CAGGGACCGGTTCTGCAA 59.570 61.111 20.77 0.00 0.00 4.08
7394 16564 0.465287 CAAGCCAAAAGCCCTGTGTT 59.535 50.000 0.00 0.00 45.47 3.32
7424 16594 5.480422 GGTTTGATGTATTTTCCCTTGGAGT 59.520 40.000 0.00 0.00 31.21 3.85
7469 16639 6.935208 GGGATAGTTCAGGTTTGGTGTATATC 59.065 42.308 0.00 0.00 0.00 1.63
7477 16651 2.576191 TGAGGGGATAGTTCAGGTTTGG 59.424 50.000 0.00 0.00 0.00 3.28
7503 16677 9.997482 TGTGATTCTAGTTAAAACTTTGTCAAC 57.003 29.630 0.00 0.00 40.37 3.18
7550 16724 1.881903 CGAGAGGAGGCTGACTTGCA 61.882 60.000 0.00 0.00 34.04 4.08
7560 16734 2.226330 CTGATACTGGTCGAGAGGAGG 58.774 57.143 0.00 0.00 0.00 4.30
7680 16854 5.614324 TGAAATATTGACCGGATCTGACT 57.386 39.130 9.46 0.00 0.00 3.41
7689 16863 8.836413 AGTGGTTTATGTATGAAATATTGACCG 58.164 33.333 0.00 0.00 0.00 4.79
7725 16899 2.438800 TTTTTGACCCGAAACCTCCA 57.561 45.000 0.00 0.00 0.00 3.86
7726 16900 3.610821 CGAATTTTTGACCCGAAACCTCC 60.611 47.826 0.00 0.00 0.00 4.30
7728 16902 2.295070 CCGAATTTTTGACCCGAAACCT 59.705 45.455 0.00 0.00 0.00 3.50
7736 16911 3.181496 GGCATCTCTCCGAATTTTTGACC 60.181 47.826 0.00 0.00 0.00 4.02
7739 16914 3.441572 ACTGGCATCTCTCCGAATTTTTG 59.558 43.478 0.00 0.00 0.00 2.44
7748 16923 2.467826 GCGCAACTGGCATCTCTCC 61.468 63.158 0.30 0.00 45.17 3.71
7751 16926 3.512516 GGGCGCAACTGGCATCTC 61.513 66.667 10.83 0.00 45.17 2.75
7768 16943 2.858974 AAGGTGACAGGGGGTGGG 60.859 66.667 0.00 0.00 0.00 4.61
7769 16944 2.436109 CAAGGTGACAGGGGGTGG 59.564 66.667 0.00 0.00 0.00 4.61
7770 16945 2.282462 GCAAGGTGACAGGGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
7771 16946 2.450502 AGCAAGGTGACAGGGGGT 60.451 61.111 0.00 0.00 0.00 4.95
7772 16947 2.352805 GAGCAAGGTGACAGGGGG 59.647 66.667 0.00 0.00 0.00 5.40
7773 16948 2.067932 TTGGAGCAAGGTGACAGGGG 62.068 60.000 0.00 0.00 0.00 4.79
7774 16949 0.890996 GTTGGAGCAAGGTGACAGGG 60.891 60.000 0.00 0.00 0.00 4.45
7775 16950 0.890996 GGTTGGAGCAAGGTGACAGG 60.891 60.000 0.00 0.00 0.00 4.00
7776 16951 0.890996 GGGTTGGAGCAAGGTGACAG 60.891 60.000 0.00 0.00 0.00 3.51
7777 16952 1.150536 GGGTTGGAGCAAGGTGACA 59.849 57.895 0.00 0.00 0.00 3.58
7778 16953 0.606673 GAGGGTTGGAGCAAGGTGAC 60.607 60.000 0.00 0.00 0.00 3.67
7779 16954 1.761174 GAGGGTTGGAGCAAGGTGA 59.239 57.895 0.00 0.00 0.00 4.02
7780 16955 1.303643 GGAGGGTTGGAGCAAGGTG 60.304 63.158 0.00 0.00 0.00 4.00
7781 16956 1.774217 TGGAGGGTTGGAGCAAGGT 60.774 57.895 0.00 0.00 0.00 3.50
7782 16957 1.303643 GTGGAGGGTTGGAGCAAGG 60.304 63.158 0.00 0.00 0.00 3.61
7783 16958 1.303643 GGTGGAGGGTTGGAGCAAG 60.304 63.158 0.00 0.00 0.00 4.01
7784 16959 2.840753 GGGTGGAGGGTTGGAGCAA 61.841 63.158 0.00 0.00 0.00 3.91
7785 16960 3.256960 GGGTGGAGGGTTGGAGCA 61.257 66.667 0.00 0.00 0.00 4.26
7786 16961 4.048470 GGGGTGGAGGGTTGGAGC 62.048 72.222 0.00 0.00 0.00 4.70
7787 16962 3.339093 GGGGGTGGAGGGTTGGAG 61.339 72.222 0.00 0.00 0.00 3.86
7788 16963 3.532039 ATGGGGGTGGAGGGTTGGA 62.532 63.158 0.00 0.00 0.00 3.53
7789 16964 2.946650 ATGGGGGTGGAGGGTTGG 60.947 66.667 0.00 0.00 0.00 3.77
7790 16965 2.683475 GATGGGGGTGGAGGGTTG 59.317 66.667 0.00 0.00 0.00 3.77
7791 16966 2.617215 GGATGGGGGTGGAGGGTT 60.617 66.667 0.00 0.00 0.00 4.11
7792 16967 3.637544 AGGATGGGGGTGGAGGGT 61.638 66.667 0.00 0.00 0.00 4.34
7793 16968 2.774351 GAGGATGGGGGTGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
7794 16969 2.774351 GGAGGATGGGGGTGGAGG 60.774 72.222 0.00 0.00 0.00 4.30
7795 16970 2.774351 GGGAGGATGGGGGTGGAG 60.774 72.222 0.00 0.00 0.00 3.86
7796 16971 2.904967 AAGGGAGGATGGGGGTGGA 61.905 63.158 0.00 0.00 0.00 4.02
7797 16972 2.287194 AAGGGAGGATGGGGGTGG 60.287 66.667 0.00 0.00 0.00 4.61
7798 16973 0.995675 ATCAAGGGAGGATGGGGGTG 60.996 60.000 0.00 0.00 0.00 4.61
7799 16974 0.699231 GATCAAGGGAGGATGGGGGT 60.699 60.000 0.00 0.00 0.00 4.95
7800 16975 0.402566 AGATCAAGGGAGGATGGGGG 60.403 60.000 0.00 0.00 0.00 5.40
7801 16976 0.769873 CAGATCAAGGGAGGATGGGG 59.230 60.000 0.00 0.00 0.00 4.96
7802 16977 0.769873 CCAGATCAAGGGAGGATGGG 59.230 60.000 0.00 0.00 0.00 4.00
7803 16978 1.419387 GTCCAGATCAAGGGAGGATGG 59.581 57.143 0.00 0.00 32.85 3.51
7804 16979 1.069823 CGTCCAGATCAAGGGAGGATG 59.930 57.143 12.69 4.36 40.59 3.51
7805 16980 1.343478 ACGTCCAGATCAAGGGAGGAT 60.343 52.381 20.59 8.10 40.59 3.24
7806 16981 0.041238 ACGTCCAGATCAAGGGAGGA 59.959 55.000 20.59 5.66 40.59 3.71
7807 16982 0.461961 GACGTCCAGATCAAGGGAGG 59.538 60.000 3.51 15.14 43.05 4.30
7808 16983 1.479709 AGACGTCCAGATCAAGGGAG 58.520 55.000 13.01 0.00 32.85 4.30
7809 16984 2.241430 TCTAGACGTCCAGATCAAGGGA 59.759 50.000 13.01 0.00 0.00 4.20
7810 16985 2.621055 CTCTAGACGTCCAGATCAAGGG 59.379 54.545 14.16 0.00 0.00 3.95
7811 16986 2.034053 GCTCTAGACGTCCAGATCAAGG 59.966 54.545 14.16 3.72 0.00 3.61
7812 16987 2.948979 AGCTCTAGACGTCCAGATCAAG 59.051 50.000 14.16 4.08 0.00 3.02
7813 16988 2.946329 GAGCTCTAGACGTCCAGATCAA 59.054 50.000 14.16 0.00 0.00 2.57
7814 16989 2.566913 GAGCTCTAGACGTCCAGATCA 58.433 52.381 14.16 0.00 0.00 2.92
7815 16990 1.877443 GGAGCTCTAGACGTCCAGATC 59.123 57.143 14.16 13.96 0.00 2.75
7816 16991 1.213182 TGGAGCTCTAGACGTCCAGAT 59.787 52.381 14.16 5.71 34.03 2.90
7817 16992 0.618981 TGGAGCTCTAGACGTCCAGA 59.381 55.000 14.64 13.16 34.03 3.86
7818 16993 1.464734 TTGGAGCTCTAGACGTCCAG 58.535 55.000 14.64 8.56 40.20 3.86
7819 16994 1.919240 TTTGGAGCTCTAGACGTCCA 58.081 50.000 14.64 12.55 37.31 4.02
7820 16995 3.633065 ACTATTTGGAGCTCTAGACGTCC 59.367 47.826 14.64 8.25 0.00 4.79
7821 16996 4.602995 CACTATTTGGAGCTCTAGACGTC 58.397 47.826 14.64 7.70 0.00 4.34
7822 16997 4.640789 CACTATTTGGAGCTCTAGACGT 57.359 45.455 14.64 1.21 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.