Multiple sequence alignment - TraesCS7B01G224400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G224400 chr7B 100.000 4213 0 0 1 4213 424155404 424151192 0.000000e+00 7781.0
1 TraesCS7B01G224400 chr7B 91.538 260 18 2 3958 4213 445678789 445678530 5.180000e-94 355.0
2 TraesCS7B01G224400 chr7B 87.838 74 6 3 339 410 246002889 246002961 2.700000e-12 84.2
3 TraesCS7B01G224400 chr7D 93.969 1973 79 10 962 2925 409611050 409609109 0.000000e+00 2948.0
4 TraesCS7B01G224400 chr7D 95.688 603 15 1 2922 3513 409609040 409608438 0.000000e+00 959.0
5 TraesCS7B01G224400 chr7D 92.775 346 23 1 1 344 409611958 409611613 2.260000e-137 499.0
6 TraesCS7B01G224400 chr7D 95.935 246 8 2 3521 3765 409608367 409608123 8.490000e-107 398.0
7 TraesCS7B01G224400 chr7D 84.078 358 24 11 588 918 409611398 409611047 8.790000e-82 315.0
8 TraesCS7B01G224400 chr7D 99.415 171 1 0 3788 3958 409604845 409604675 1.140000e-80 311.0
9 TraesCS7B01G224400 chr7D 86.935 199 12 6 411 600 409611609 409611416 1.190000e-50 211.0
10 TraesCS7B01G224400 chr7D 87.838 74 6 3 339 410 265697864 265697936 2.700000e-12 84.2
11 TraesCS7B01G224400 chr7D 87.013 77 4 3 339 409 216080812 216080736 9.710000e-12 82.4
12 TraesCS7B01G224400 chr7D 94.444 36 0 2 378 411 78792817 78792852 2.000000e-03 54.7
13 TraesCS7B01G224400 chr7A 94.812 1754 82 7 1174 2925 470801327 470799581 0.000000e+00 2726.0
14 TraesCS7B01G224400 chr7A 94.702 604 20 2 2922 3513 470799512 470798909 0.000000e+00 928.0
15 TraesCS7B01G224400 chr7A 90.988 344 29 1 1 342 470844313 470843970 2.970000e-126 462.0
16 TraesCS7B01G224400 chr7A 80.297 472 60 17 462 926 470815226 470814781 4.060000e-85 326.0
17 TraesCS7B01G224400 chr7A 95.000 180 9 0 968 1147 470814773 470814594 2.480000e-72 283.0
18 TraesCS7B01G224400 chr7A 96.629 89 3 0 3733 3821 470798854 470798766 9.440000e-32 148.0
19 TraesCS7B01G224400 chr7A 95.652 46 2 0 337 382 716325839 716325794 1.620000e-09 75.0
20 TraesCS7B01G224400 chr4B 92.941 255 17 1 3958 4211 646855209 646854955 1.850000e-98 370.0
21 TraesCS7B01G224400 chr4B 89.855 69 7 0 339 407 469506269 469506201 5.800000e-14 89.8
22 TraesCS7B01G224400 chr2B 91.892 259 18 2 3956 4213 643353757 643353501 4.010000e-95 359.0
23 TraesCS7B01G224400 chr2B 91.120 259 22 1 3956 4213 711309707 711309965 2.410000e-92 350.0
24 TraesCS7B01G224400 chrUn 91.829 257 20 1 3958 4213 274638071 274638327 1.440000e-94 357.0
25 TraesCS7B01G224400 chrUn 91.829 257 20 1 3958 4213 383534262 383534518 1.440000e-94 357.0
26 TraesCS7B01G224400 chr1B 91.829 257 20 1 3958 4213 23053600 23053344 1.440000e-94 357.0
27 TraesCS7B01G224400 chr1B 91.440 257 21 1 3958 4213 545419103 545419359 6.700000e-93 351.0
28 TraesCS7B01G224400 chr5B 90.272 257 22 2 3956 4211 53141335 53141589 2.430000e-87 333.0
29 TraesCS7B01G224400 chr5B 94.444 36 0 1 378 411 259544202 259544237 2.000000e-03 54.7
30 TraesCS7B01G224400 chr4A 97.674 43 1 0 335 377 700444957 700444999 1.620000e-09 75.0
31 TraesCS7B01G224400 chr4A 94.737 38 0 2 378 413 628002245 628002282 1.640000e-04 58.4
32 TraesCS7B01G224400 chr3B 84.615 78 6 3 340 411 9181163 9181086 5.840000e-09 73.1
33 TraesCS7B01G224400 chr6B 92.000 50 4 0 335 384 77774301 77774252 2.100000e-08 71.3
34 TraesCS7B01G224400 chr6A 95.349 43 2 0 339 381 524833513 524833555 7.560000e-08 69.4
35 TraesCS7B01G224400 chr4D 90.698 43 2 2 369 410 451640033 451639992 5.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G224400 chr7B 424151192 424155404 4212 True 7781.000000 7781 100.0000 1 4213 1 chr7B.!!$R1 4212
1 TraesCS7B01G224400 chr7D 409604675 409611958 7283 True 805.857143 2948 92.6850 1 3958 7 chr7D.!!$R2 3957
2 TraesCS7B01G224400 chr7A 470798766 470801327 2561 True 1267.333333 2726 95.3810 1174 3821 3 chr7A.!!$R3 2647
3 TraesCS7B01G224400 chr7A 470814594 470815226 632 True 304.500000 326 87.6485 462 1147 2 chr7A.!!$R4 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
965 1035 0.047176 AGAGAGAGGGAGGGAGGAGA 59.953 60.0 0.0 0.0 0.0 3.71 F
2364 2447 0.250234 TCCCATCTGGAAGTTGCTCG 59.750 55.0 0.0 0.0 41.4 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 2466 0.388649 CGGTGAGCCTGTGACAGTAC 60.389 60.0 12.15 3.27 0.00 2.73 R
4121 7628 0.247655 CGATGATCGCCGGTTTGTTG 60.248 55.0 0.41 0.00 31.14 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.613777 AAGAAGTGTCACGGGGGATC 59.386 55.000 0.00 0.00 0.00 3.36
22 23 0.613777 GAAGTGTCACGGGGGATCTT 59.386 55.000 0.00 0.00 0.00 2.40
39 40 7.060421 GGGGATCTTTATCAAGTCATTGGTAA 58.940 38.462 0.00 0.00 39.66 2.85
79 80 2.052779 CCTCGAGCTATGCCATGGA 58.947 57.895 18.40 0.31 0.00 3.41
82 83 1.069823 CTCGAGCTATGCCATGGAAGT 59.930 52.381 18.40 2.20 0.00 3.01
94 95 2.571653 CCATGGAAGTAGGGAACAGACA 59.428 50.000 5.56 0.00 0.00 3.41
103 104 1.630878 AGGGAACAGACACTTGGGATC 59.369 52.381 0.00 0.00 0.00 3.36
105 106 1.002087 GGAACAGACACTTGGGATCGT 59.998 52.381 0.00 0.00 0.00 3.73
112 113 1.280710 ACACTTGGGATCGTGGCATTA 59.719 47.619 0.00 0.00 35.51 1.90
128 129 0.107654 ATTACAAGGGCTGCGAGACC 60.108 55.000 0.07 0.07 46.64 3.85
146 147 1.589993 CTCACCCTCATACGCTGCG 60.590 63.158 21.91 21.91 0.00 5.18
157 158 0.179148 TACGCTGCGATGTGAACGAT 60.179 50.000 30.47 4.23 0.00 3.73
208 209 1.110442 CTCTCCTGGAGCGTCTTCAT 58.890 55.000 19.08 0.00 35.08 2.57
220 221 1.270839 CGTCTTCATGTGAGGGGTTGT 60.271 52.381 0.00 0.00 0.00 3.32
230 231 1.974957 TGAGGGGTTGTTTCGAGATCA 59.025 47.619 0.00 0.00 0.00 2.92
231 232 2.571653 TGAGGGGTTGTTTCGAGATCAT 59.428 45.455 0.00 0.00 0.00 2.45
242 243 1.372748 GAGATCATCGGCGAGCCAG 60.373 63.158 17.22 5.40 35.37 4.85
294 295 4.335315 GGCAATGTCGGTTCAAATCTATGA 59.665 41.667 0.00 0.00 0.00 2.15
296 297 5.065218 GCAATGTCGGTTCAAATCTATGACT 59.935 40.000 0.00 0.00 0.00 3.41
312 313 6.849151 TCTATGACTGCTATAACTGGGACTA 58.151 40.000 0.00 0.00 0.00 2.59
317 318 5.269991 ACTGCTATAACTGGGACTAAGTGA 58.730 41.667 0.00 0.00 0.00 3.41
344 347 7.963532 TGGTATTTCTCCATAAGATGTACTCC 58.036 38.462 0.00 0.00 32.82 3.85
345 348 7.016268 TGGTATTTCTCCATAAGATGTACTCCC 59.984 40.741 0.00 0.00 32.82 4.30
346 349 7.235812 GGTATTTCTCCATAAGATGTACTCCCT 59.764 40.741 0.00 0.00 32.82 4.20
347 350 7.698163 ATTTCTCCATAAGATGTACTCCCTT 57.302 36.000 0.00 0.00 32.82 3.95
348 351 6.732896 TTCTCCATAAGATGTACTCCCTTC 57.267 41.667 0.00 0.00 32.82 3.46
349 352 5.777449 TCTCCATAAGATGTACTCCCTTCA 58.223 41.667 0.00 0.00 0.00 3.02
350 353 6.385443 TCTCCATAAGATGTACTCCCTTCAT 58.615 40.000 0.00 0.00 0.00 2.57
351 354 7.535738 TCTCCATAAGATGTACTCCCTTCATA 58.464 38.462 0.00 0.00 0.00 2.15
352 355 8.010697 TCTCCATAAGATGTACTCCCTTCATAA 58.989 37.037 0.00 0.00 0.00 1.90
353 356 8.561536 TCCATAAGATGTACTCCCTTCATAAA 57.438 34.615 0.00 0.00 0.00 1.40
354 357 8.651389 TCCATAAGATGTACTCCCTTCATAAAG 58.349 37.037 0.00 0.00 0.00 1.85
355 358 8.651389 CCATAAGATGTACTCCCTTCATAAAGA 58.349 37.037 0.00 0.00 34.14 2.52
418 421 4.246712 ACAAAGGGAGTATACGAGAGGA 57.753 45.455 0.00 0.00 0.00 3.71
427 430 3.961408 AGTATACGAGAGGAGCAACCAAT 59.039 43.478 0.00 0.00 42.04 3.16
459 462 6.652900 TCGGATTGTCATTGTTGATCAGTTTA 59.347 34.615 0.00 0.00 33.56 2.01
478 490 4.873746 TTAGGGATGATCGGATTCTGAC 57.126 45.455 0.00 0.00 0.00 3.51
493 505 2.031870 TCTGACGGCAGCTATGTACAT 58.968 47.619 15.33 13.93 42.01 2.29
494 506 3.219281 TCTGACGGCAGCTATGTACATA 58.781 45.455 15.33 14.75 42.01 2.29
495 507 3.004419 TCTGACGGCAGCTATGTACATAC 59.996 47.826 15.33 8.96 42.01 2.39
496 508 2.956333 TGACGGCAGCTATGTACATACT 59.044 45.455 11.62 10.89 0.00 2.12
497 509 3.243401 TGACGGCAGCTATGTACATACTG 60.243 47.826 25.42 25.42 0.00 2.74
532 544 1.272212 TCATTTTCTTTTCCAGGCGGC 59.728 47.619 0.00 0.00 0.00 6.53
600 642 1.892209 TCTGCCGACCTTTTCTTTCC 58.108 50.000 0.00 0.00 0.00 3.13
616 658 4.654915 TCTTTCCACAGCAGAATCATTCA 58.345 39.130 0.00 0.00 0.00 2.57
618 660 5.535783 TCTTTCCACAGCAGAATCATTCAAA 59.464 36.000 0.00 0.00 0.00 2.69
683 726 1.195115 TGCAGCTCCCGTATTCTCTT 58.805 50.000 0.00 0.00 0.00 2.85
695 738 1.677637 ATTCTCTTCGGCTCCGGTCC 61.678 60.000 8.59 3.06 40.25 4.46
727 773 4.635699 TTTTTCTTAGAGTCACCCCCTC 57.364 45.455 0.00 0.00 0.00 4.30
728 774 2.249309 TTCTTAGAGTCACCCCCTCC 57.751 55.000 0.00 0.00 0.00 4.30
729 775 0.338814 TCTTAGAGTCACCCCCTCCC 59.661 60.000 0.00 0.00 0.00 4.30
731 777 1.457380 TTAGAGTCACCCCCTCCCCA 61.457 60.000 0.00 0.00 0.00 4.96
735 797 4.715130 TCACCCCCTCCCCAGACG 62.715 72.222 0.00 0.00 0.00 4.18
742 804 1.328430 CCCTCCCCAGACGGTAGAAC 61.328 65.000 0.00 0.00 0.00 3.01
786 855 2.683933 GGGCCCTGGTCGAGAGAA 60.684 66.667 17.04 0.00 45.01 2.87
801 870 6.103101 TCGAGAGAAGACGAAGGGAACTTG 62.103 50.000 0.00 0.00 45.39 3.16
823 892 7.499895 ACTTGAAATGAAAGGAAATGTTTGCAT 59.500 29.630 0.00 0.00 36.80 3.96
826 895 8.366401 TGAAATGAAAGGAAATGTTTGCATCTA 58.634 29.630 0.00 0.00 33.50 1.98
839 908 1.134753 TGCATCTATTGGCGCCAAAAG 59.865 47.619 42.74 28.99 39.55 2.27
848 917 0.244721 GGCGCCAAAAGCTCAATTCT 59.755 50.000 24.80 0.00 40.39 2.40
914 984 2.444700 GAACCGCGGGGAAACAGAGA 62.445 60.000 31.76 0.00 36.97 3.10
915 985 2.125512 CCGCGGGGAAACAGAGAG 60.126 66.667 20.10 0.00 34.06 3.20
916 986 2.646175 CCGCGGGGAAACAGAGAGA 61.646 63.158 20.10 0.00 34.06 3.10
917 987 1.153745 CGCGGGGAAACAGAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
918 988 1.595993 CGCGGGGAAACAGAGAGAGA 61.596 60.000 0.00 0.00 0.00 3.10
919 989 0.174617 GCGGGGAAACAGAGAGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
920 990 1.840737 CGGGGAAACAGAGAGAGAGA 58.159 55.000 0.00 0.00 0.00 3.10
921 991 1.748493 CGGGGAAACAGAGAGAGAGAG 59.252 57.143 0.00 0.00 0.00 3.20
922 992 2.619332 CGGGGAAACAGAGAGAGAGAGA 60.619 54.545 0.00 0.00 0.00 3.10
923 993 3.023832 GGGGAAACAGAGAGAGAGAGAG 58.976 54.545 0.00 0.00 0.00 3.20
924 994 3.308832 GGGGAAACAGAGAGAGAGAGAGA 60.309 52.174 0.00 0.00 0.00 3.10
925 995 3.947834 GGGAAACAGAGAGAGAGAGAGAG 59.052 52.174 0.00 0.00 0.00 3.20
926 996 4.324254 GGGAAACAGAGAGAGAGAGAGAGA 60.324 50.000 0.00 0.00 0.00 3.10
927 997 4.878397 GGAAACAGAGAGAGAGAGAGAGAG 59.122 50.000 0.00 0.00 0.00 3.20
928 998 5.338381 GGAAACAGAGAGAGAGAGAGAGAGA 60.338 48.000 0.00 0.00 0.00 3.10
929 999 5.350504 AACAGAGAGAGAGAGAGAGAGAG 57.649 47.826 0.00 0.00 0.00 3.20
930 1000 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
931 1001 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
932 1002 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
933 1003 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
934 1004 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
935 1005 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
936 1006 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
937 1007 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
938 1008 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
939 1009 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
940 1010 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
941 1011 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
942 1012 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
943 1013 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
944 1014 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
945 1015 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
946 1016 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
947 1017 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
948 1018 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
958 1028 2.370189 GAGAGAGAGAGAGAGAGGGAGG 59.630 59.091 0.00 0.00 0.00 4.30
959 1029 1.421646 GAGAGAGAGAGAGAGGGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
965 1035 0.047176 AGAGAGAGGGAGGGAGGAGA 59.953 60.000 0.00 0.00 0.00 3.71
977 1049 3.850095 GAGGAGATAGCCGCCGTGC 62.850 68.421 0.00 0.00 39.97 5.34
997 1069 2.610859 GTGGGAGGAAGAGGGGCA 60.611 66.667 0.00 0.00 0.00 5.36
1017 1089 3.544607 ATGCCGATCGAGCTGCCT 61.545 61.111 18.66 1.52 0.00 4.75
1171 1243 2.105128 GCCTCACCGTCCTCATCG 59.895 66.667 0.00 0.00 0.00 3.84
1220 1292 1.548357 AACCTGCACCGCATCTCTCT 61.548 55.000 0.00 0.00 38.13 3.10
1224 1296 1.253593 TGCACCGCATCTCTCTCTGT 61.254 55.000 0.00 0.00 31.71 3.41
1225 1297 0.741326 GCACCGCATCTCTCTCTGTA 59.259 55.000 0.00 0.00 0.00 2.74
1297 1377 0.612732 CCATCTCAAAGCTTGGCCCA 60.613 55.000 0.00 0.00 0.00 5.36
1372 1452 2.338984 GACTTCACCGTCACCGCT 59.661 61.111 0.00 0.00 34.11 5.52
1421 1502 2.657237 CCAACGCCGTCCTCTTCT 59.343 61.111 0.00 0.00 0.00 2.85
1436 1517 6.513556 CGTCCTCTTCTCATTCTCGCTAATTA 60.514 42.308 0.00 0.00 0.00 1.40
1448 1529 9.862371 CATTCTCGCTAATTACCTCATTAGTAT 57.138 33.333 3.13 0.00 38.52 2.12
1476 1557 0.304705 CGGCCGATTCGAAATCCTTG 59.695 55.000 24.07 0.00 0.00 3.61
1595 1676 0.973632 TGCCGTTCAGGTACATCACT 59.026 50.000 0.00 0.00 43.70 3.41
1719 1800 1.442148 GCCTCCATACGTCAGGTCC 59.558 63.158 0.00 0.00 0.00 4.46
1746 1827 5.122869 GTGCTGCTTCATCAGTAAATCAGAA 59.877 40.000 0.00 0.00 36.49 3.02
1754 1835 7.312657 TCATCAGTAAATCAGAACAGCAATC 57.687 36.000 0.00 0.00 0.00 2.67
1780 1862 4.432712 CCGTGTGTCTCATCATCACATTA 58.567 43.478 0.00 0.00 42.60 1.90
1915 1997 4.675510 GGGTCAAAGATATACGTCGACAA 58.324 43.478 17.16 2.88 0.00 3.18
2010 2092 2.932614 CGCTTTCAGGTGATCGAATTCT 59.067 45.455 3.52 0.00 0.00 2.40
2021 2103 0.970640 TCGAATTCTCCCGGTTGTCA 59.029 50.000 0.00 0.00 0.00 3.58
2036 2118 3.390521 TCAGAGCGGGCAACGGAT 61.391 61.111 2.23 0.00 44.51 4.18
2364 2447 0.250234 TCCCATCTGGAAGTTGCTCG 59.750 55.000 0.00 0.00 41.40 5.03
2383 2466 3.990092 TCGGAATACCTCATGGAAATCG 58.010 45.455 0.00 0.00 37.04 3.34
2493 2576 3.764885 CTGTTTGCAGCCAGGTATTAC 57.235 47.619 6.77 0.00 35.77 1.89
2494 2577 3.081061 CTGTTTGCAGCCAGGTATTACA 58.919 45.455 6.77 0.00 35.77 2.41
2495 2578 3.491342 TGTTTGCAGCCAGGTATTACAA 58.509 40.909 0.00 0.00 0.00 2.41
2496 2579 3.505680 TGTTTGCAGCCAGGTATTACAAG 59.494 43.478 0.00 0.00 0.00 3.16
2497 2580 3.712016 TTGCAGCCAGGTATTACAAGA 57.288 42.857 0.00 0.00 0.00 3.02
2498 2581 3.931907 TGCAGCCAGGTATTACAAGAT 57.068 42.857 0.00 0.00 0.00 2.40
2499 2582 3.544684 TGCAGCCAGGTATTACAAGATG 58.455 45.455 0.00 0.00 0.00 2.90
2500 2583 3.199727 TGCAGCCAGGTATTACAAGATGA 59.800 43.478 0.00 0.00 0.00 2.92
2501 2584 4.199310 GCAGCCAGGTATTACAAGATGAA 58.801 43.478 0.00 0.00 0.00 2.57
2502 2585 4.274459 GCAGCCAGGTATTACAAGATGAAG 59.726 45.833 0.00 0.00 0.00 3.02
2503 2586 4.818546 CAGCCAGGTATTACAAGATGAAGG 59.181 45.833 0.00 0.00 0.00 3.46
2504 2587 4.721776 AGCCAGGTATTACAAGATGAAGGA 59.278 41.667 0.00 0.00 0.00 3.36
2505 2588 4.816925 GCCAGGTATTACAAGATGAAGGAC 59.183 45.833 0.00 0.00 0.00 3.85
2506 2589 5.368989 CCAGGTATTACAAGATGAAGGACC 58.631 45.833 0.00 0.00 0.00 4.46
2507 2590 5.050490 CAGGTATTACAAGATGAAGGACCG 58.950 45.833 0.00 0.00 0.00 4.79
2508 2591 4.101119 AGGTATTACAAGATGAAGGACCGG 59.899 45.833 0.00 0.00 0.00 5.28
2509 2592 4.141779 GGTATTACAAGATGAAGGACCGGT 60.142 45.833 6.92 6.92 0.00 5.28
2510 2593 3.328382 TTACAAGATGAAGGACCGGTG 57.672 47.619 14.63 0.00 0.00 4.94
3092 3268 3.057596 GGTCATCGAAGGTTTTGAATGCA 60.058 43.478 0.00 0.00 0.00 3.96
3209 3385 1.550524 TCCTCCCAGTTTCGTCATCTG 59.449 52.381 0.00 0.00 0.00 2.90
3260 3437 6.790232 AGATTATTGCTAGGGCTCTAGATC 57.210 41.667 25.30 16.54 44.35 2.75
3347 3535 8.567948 CAAAGTGATTTAGTGGTTGTGAATACT 58.432 33.333 0.00 0.00 0.00 2.12
3488 3676 4.226761 GTTTTTATCAGTTTGGGCTCACG 58.773 43.478 0.00 0.00 0.00 4.35
3489 3677 1.448985 TTATCAGTTTGGGCTCACGC 58.551 50.000 0.00 0.00 0.00 5.34
3513 3701 1.740025 GTGCCAAGTTCAGATAGGTGC 59.260 52.381 0.00 0.00 0.00 5.01
3514 3702 1.340017 TGCCAAGTTCAGATAGGTGCC 60.340 52.381 0.00 0.00 0.00 5.01
3515 3703 1.340017 GCCAAGTTCAGATAGGTGCCA 60.340 52.381 0.00 0.00 0.00 4.92
3518 3706 3.614092 CAAGTTCAGATAGGTGCCATGT 58.386 45.455 0.00 0.00 0.00 3.21
3519 3707 3.550437 AGTTCAGATAGGTGCCATGTC 57.450 47.619 0.00 0.00 0.00 3.06
3545 3796 0.813821 GAGCCTTGCTGGTGGATTTC 59.186 55.000 0.00 0.00 39.88 2.17
3549 3800 1.247567 CTTGCTGGTGGATTTCGGTT 58.752 50.000 0.00 0.00 0.00 4.44
3692 3943 3.920412 TGAATGTTCGAGAAGATGTGACG 59.080 43.478 0.00 0.00 0.00 4.35
3831 7338 5.069781 TGTGGGGAACTCTTATTTTTGTTGG 59.930 40.000 0.00 0.00 0.00 3.77
3958 7465 7.755591 TGTTATGCTTTGAAAGAGATGCTAAG 58.244 34.615 9.48 0.00 0.00 2.18
3959 7466 7.607607 TGTTATGCTTTGAAAGAGATGCTAAGA 59.392 33.333 9.48 0.00 0.00 2.10
3960 7467 6.680874 ATGCTTTGAAAGAGATGCTAAGAG 57.319 37.500 9.48 0.00 0.00 2.85
3961 7468 4.394300 TGCTTTGAAAGAGATGCTAAGAGC 59.606 41.667 9.48 0.00 42.82 4.09
3975 7482 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
3976 7483 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
3977 7484 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
3998 7505 3.747976 CCCAGGGCGCCGAAAAAG 61.748 66.667 22.54 5.42 0.00 2.27
3999 7506 2.671619 CCAGGGCGCCGAAAAAGA 60.672 61.111 22.54 0.00 0.00 2.52
4000 7507 2.690778 CCAGGGCGCCGAAAAAGAG 61.691 63.158 22.54 3.24 0.00 2.85
4001 7508 3.056328 AGGGCGCCGAAAAAGAGC 61.056 61.111 22.54 2.36 0.00 4.09
4007 7514 2.870372 CCGAAAAAGAGCGGCCTG 59.130 61.111 0.00 0.00 41.17 4.85
4008 7515 2.690778 CCGAAAAAGAGCGGCCTGG 61.691 63.158 0.00 0.00 41.17 4.45
4009 7516 2.690778 CGAAAAAGAGCGGCCTGGG 61.691 63.158 0.00 0.00 0.00 4.45
4010 7517 2.283173 AAAAAGAGCGGCCTGGGG 60.283 61.111 0.00 0.00 0.00 4.96
4011 7518 3.886550 AAAAAGAGCGGCCTGGGGG 62.887 63.158 0.00 0.00 0.00 5.40
4033 7540 2.900337 CCGGTGCTATTTCGGCCC 60.900 66.667 0.00 0.00 37.25 5.80
4034 7541 2.189521 CGGTGCTATTTCGGCCCT 59.810 61.111 0.00 0.00 0.00 5.19
4035 7542 2.180204 CGGTGCTATTTCGGCCCTG 61.180 63.158 0.00 0.00 0.00 4.45
4036 7543 1.823899 GGTGCTATTTCGGCCCTGG 60.824 63.158 0.00 0.00 0.00 4.45
4037 7544 1.823899 GTGCTATTTCGGCCCTGGG 60.824 63.158 8.86 8.86 0.00 4.45
4038 7545 2.203351 GCTATTTCGGCCCTGGGG 60.203 66.667 16.03 4.75 38.57 4.96
4039 7546 3.056754 GCTATTTCGGCCCTGGGGT 62.057 63.158 16.03 0.00 37.65 4.95
4040 7547 1.613061 CTATTTCGGCCCTGGGGTT 59.387 57.895 16.03 0.00 37.65 4.11
4041 7548 0.465642 CTATTTCGGCCCTGGGGTTC 60.466 60.000 16.03 0.00 37.65 3.62
4042 7549 1.208844 TATTTCGGCCCTGGGGTTCA 61.209 55.000 16.03 0.00 37.65 3.18
4043 7550 1.874299 ATTTCGGCCCTGGGGTTCAT 61.874 55.000 16.03 0.00 37.65 2.57
4044 7551 2.087857 TTTCGGCCCTGGGGTTCATT 62.088 55.000 16.03 0.00 37.65 2.57
4045 7552 2.037208 CGGCCCTGGGGTTCATTT 59.963 61.111 16.03 0.00 37.65 2.32
4046 7553 2.052104 CGGCCCTGGGGTTCATTTC 61.052 63.158 16.03 0.00 37.65 2.17
4047 7554 1.388133 GGCCCTGGGGTTCATTTCT 59.612 57.895 16.03 0.00 37.65 2.52
4048 7555 0.252239 GGCCCTGGGGTTCATTTCTT 60.252 55.000 16.03 0.00 37.65 2.52
4049 7556 1.186200 GCCCTGGGGTTCATTTCTTC 58.814 55.000 16.03 0.00 37.65 2.87
4050 7557 1.852633 CCCTGGGGTTCATTTCTTCC 58.147 55.000 4.27 0.00 0.00 3.46
4051 7558 1.619704 CCCTGGGGTTCATTTCTTCCC 60.620 57.143 4.27 0.00 39.22 3.97
4052 7559 1.077005 CCTGGGGTTCATTTCTTCCCA 59.923 52.381 0.00 0.00 44.59 4.37
4053 7560 2.603075 TGGGGTTCATTTCTTCCCAG 57.397 50.000 0.00 0.00 42.21 4.45
4054 7561 1.186200 GGGGTTCATTTCTTCCCAGC 58.814 55.000 0.00 0.00 41.51 4.85
4055 7562 1.186200 GGGTTCATTTCTTCCCAGCC 58.814 55.000 0.00 0.00 39.68 4.85
4056 7563 1.549950 GGGTTCATTTCTTCCCAGCCA 60.550 52.381 0.00 0.00 39.68 4.75
4057 7564 1.546029 GGTTCATTTCTTCCCAGCCAC 59.454 52.381 0.00 0.00 0.00 5.01
4058 7565 1.200020 GTTCATTTCTTCCCAGCCACG 59.800 52.381 0.00 0.00 0.00 4.94
4059 7566 0.960364 TCATTTCTTCCCAGCCACGC 60.960 55.000 0.00 0.00 0.00 5.34
4060 7567 2.040544 ATTTCTTCCCAGCCACGCG 61.041 57.895 3.53 3.53 0.00 6.01
4092 7599 4.779475 CCGAAGGCGCTCCATATT 57.221 55.556 7.64 0.00 46.14 1.28
4093 7600 2.533318 CCGAAGGCGCTCCATATTC 58.467 57.895 7.64 1.90 46.14 1.75
4094 7601 1.284982 CCGAAGGCGCTCCATATTCG 61.285 60.000 7.64 13.25 46.14 3.34
4095 7602 0.318699 CGAAGGCGCTCCATATTCGA 60.319 55.000 7.64 0.00 44.01 3.71
4096 7603 1.865865 GAAGGCGCTCCATATTCGAA 58.134 50.000 7.64 0.00 33.74 3.71
4097 7604 2.210116 GAAGGCGCTCCATATTCGAAA 58.790 47.619 7.64 0.00 33.74 3.46
4098 7605 2.550830 AGGCGCTCCATATTCGAAAT 57.449 45.000 7.64 0.00 33.74 2.17
4099 7606 2.851195 AGGCGCTCCATATTCGAAATT 58.149 42.857 7.64 0.00 33.74 1.82
4100 7607 2.808543 AGGCGCTCCATATTCGAAATTC 59.191 45.455 7.64 0.00 33.74 2.17
4101 7608 2.548057 GGCGCTCCATATTCGAAATTCA 59.452 45.455 7.64 0.00 0.00 2.57
4102 7609 3.189287 GGCGCTCCATATTCGAAATTCAT 59.811 43.478 7.64 0.00 0.00 2.57
4103 7610 4.398247 GCGCTCCATATTCGAAATTCATC 58.602 43.478 0.00 0.00 0.00 2.92
4104 7611 4.083855 GCGCTCCATATTCGAAATTCATCA 60.084 41.667 0.00 0.00 0.00 3.07
4105 7612 5.391310 GCGCTCCATATTCGAAATTCATCAT 60.391 40.000 0.00 0.00 0.00 2.45
4106 7613 6.605849 CGCTCCATATTCGAAATTCATCATT 58.394 36.000 0.00 0.00 0.00 2.57
4107 7614 6.740002 CGCTCCATATTCGAAATTCATCATTC 59.260 38.462 0.00 0.00 0.00 2.67
4108 7615 7.025963 GCTCCATATTCGAAATTCATCATTCC 58.974 38.462 0.00 0.00 0.00 3.01
4109 7616 7.452880 TCCATATTCGAAATTCATCATTCCC 57.547 36.000 0.00 0.00 0.00 3.97
4110 7617 6.149308 TCCATATTCGAAATTCATCATTCCCG 59.851 38.462 0.00 0.00 0.00 5.14
4111 7618 3.691049 TTCGAAATTCATCATTCCCGC 57.309 42.857 0.00 0.00 0.00 6.13
4112 7619 2.917933 TCGAAATTCATCATTCCCGCT 58.082 42.857 0.00 0.00 0.00 5.52
4113 7620 2.872245 TCGAAATTCATCATTCCCGCTC 59.128 45.455 0.00 0.00 0.00 5.03
4114 7621 2.613595 CGAAATTCATCATTCCCGCTCA 59.386 45.455 0.00 0.00 0.00 4.26
4115 7622 3.065233 CGAAATTCATCATTCCCGCTCAA 59.935 43.478 0.00 0.00 0.00 3.02
4116 7623 4.438608 CGAAATTCATCATTCCCGCTCAAA 60.439 41.667 0.00 0.00 0.00 2.69
4117 7624 4.644103 AATTCATCATTCCCGCTCAAAG 57.356 40.909 0.00 0.00 0.00 2.77
4118 7625 3.348647 TTCATCATTCCCGCTCAAAGA 57.651 42.857 0.00 0.00 0.00 2.52
4119 7626 3.348647 TCATCATTCCCGCTCAAAGAA 57.651 42.857 0.00 0.00 0.00 2.52
4120 7627 3.684908 TCATCATTCCCGCTCAAAGAAA 58.315 40.909 0.00 0.00 0.00 2.52
4121 7628 3.440173 TCATCATTCCCGCTCAAAGAAAC 59.560 43.478 0.00 0.00 0.00 2.78
4122 7629 2.857483 TCATTCCCGCTCAAAGAAACA 58.143 42.857 0.00 0.00 0.00 2.83
4123 7630 3.218453 TCATTCCCGCTCAAAGAAACAA 58.782 40.909 0.00 0.00 0.00 2.83
4124 7631 3.004315 TCATTCCCGCTCAAAGAAACAAC 59.996 43.478 0.00 0.00 0.00 3.32
4125 7632 2.045561 TCCCGCTCAAAGAAACAACA 57.954 45.000 0.00 0.00 0.00 3.33
4126 7633 2.370349 TCCCGCTCAAAGAAACAACAA 58.630 42.857 0.00 0.00 0.00 2.83
4127 7634 2.755655 TCCCGCTCAAAGAAACAACAAA 59.244 40.909 0.00 0.00 0.00 2.83
4128 7635 2.857748 CCCGCTCAAAGAAACAACAAAC 59.142 45.455 0.00 0.00 0.00 2.93
4129 7636 2.857748 CCGCTCAAAGAAACAACAAACC 59.142 45.455 0.00 0.00 0.00 3.27
4130 7637 2.529894 CGCTCAAAGAAACAACAAACCG 59.470 45.455 0.00 0.00 0.00 4.44
4131 7638 2.857748 GCTCAAAGAAACAACAAACCGG 59.142 45.455 0.00 0.00 0.00 5.28
4132 7639 2.857748 CTCAAAGAAACAACAAACCGGC 59.142 45.455 0.00 0.00 0.00 6.13
4133 7640 1.586123 CAAAGAAACAACAAACCGGCG 59.414 47.619 0.00 0.00 0.00 6.46
4134 7641 1.096416 AAGAAACAACAAACCGGCGA 58.904 45.000 9.30 0.00 0.00 5.54
4135 7642 1.314730 AGAAACAACAAACCGGCGAT 58.685 45.000 9.30 0.00 0.00 4.58
4136 7643 1.265905 AGAAACAACAAACCGGCGATC 59.734 47.619 9.30 0.00 0.00 3.69
4137 7644 1.002251 GAAACAACAAACCGGCGATCA 60.002 47.619 9.30 0.00 0.00 2.92
4138 7645 1.243902 AACAACAAACCGGCGATCAT 58.756 45.000 9.30 0.00 0.00 2.45
4139 7646 0.802494 ACAACAAACCGGCGATCATC 59.198 50.000 9.30 0.00 0.00 2.92
4140 7647 0.247655 CAACAAACCGGCGATCATCG 60.248 55.000 9.30 1.50 43.89 3.84
4151 7658 1.251355 CGATCATCGCGATAGTTCGG 58.749 55.000 26.67 14.81 45.59 4.30
4152 7659 0.985549 GATCATCGCGATAGTTCGGC 59.014 55.000 23.22 3.54 45.59 5.54
4153 7660 0.388649 ATCATCGCGATAGTTCGGCC 60.389 55.000 23.22 0.00 45.59 6.13
4154 7661 1.299850 CATCGCGATAGTTCGGCCA 60.300 57.895 23.22 0.00 45.59 5.36
4155 7662 0.667487 CATCGCGATAGTTCGGCCAT 60.667 55.000 23.22 0.00 45.59 4.40
4156 7663 0.033504 ATCGCGATAGTTCGGCCATT 59.966 50.000 22.33 0.00 45.59 3.16
4157 7664 0.596600 TCGCGATAGTTCGGCCATTC 60.597 55.000 3.71 0.00 45.59 2.67
4158 7665 0.874175 CGCGATAGTTCGGCCATTCA 60.874 55.000 0.00 0.00 45.59 2.57
4159 7666 1.512926 GCGATAGTTCGGCCATTCAT 58.487 50.000 2.24 0.00 45.59 2.57
4160 7667 2.683968 GCGATAGTTCGGCCATTCATA 58.316 47.619 2.24 0.00 45.59 2.15
4161 7668 2.668457 GCGATAGTTCGGCCATTCATAG 59.332 50.000 2.24 0.00 45.59 2.23
4162 7669 3.861131 GCGATAGTTCGGCCATTCATAGT 60.861 47.826 2.24 0.00 45.59 2.12
4163 7670 3.675225 CGATAGTTCGGCCATTCATAGTG 59.325 47.826 2.24 0.00 41.74 2.74
4164 7671 1.668419 AGTTCGGCCATTCATAGTGC 58.332 50.000 2.24 0.00 0.00 4.40
4165 7672 0.663153 GTTCGGCCATTCATAGTGCC 59.337 55.000 2.24 0.00 40.54 5.01
4166 7673 0.254462 TTCGGCCATTCATAGTGCCA 59.746 50.000 2.24 0.00 44.22 4.92
4167 7674 0.463654 TCGGCCATTCATAGTGCCAC 60.464 55.000 2.24 0.00 44.22 5.01
4168 7675 0.747644 CGGCCATTCATAGTGCCACA 60.748 55.000 2.24 0.00 44.22 4.17
4169 7676 1.696063 GGCCATTCATAGTGCCACAT 58.304 50.000 0.00 0.00 43.46 3.21
4170 7677 2.810032 CGGCCATTCATAGTGCCACATA 60.810 50.000 2.24 0.00 44.22 2.29
4171 7678 3.424703 GGCCATTCATAGTGCCACATAT 58.575 45.455 0.00 0.00 43.46 1.78
4172 7679 3.441572 GGCCATTCATAGTGCCACATATC 59.558 47.826 0.00 0.00 43.46 1.63
4173 7680 3.125829 GCCATTCATAGTGCCACATATCG 59.874 47.826 0.00 0.00 0.00 2.92
4174 7681 3.686241 CCATTCATAGTGCCACATATCGG 59.314 47.826 0.00 0.00 0.00 4.18
4180 7687 4.673403 GCCACATATCGGCGATCA 57.327 55.556 27.61 13.16 40.35 2.92
4181 7688 2.912986 GCCACATATCGGCGATCAA 58.087 52.632 27.61 10.63 40.35 2.57
4182 7689 1.225855 GCCACATATCGGCGATCAAA 58.774 50.000 27.61 9.78 40.35 2.69
4183 7690 1.806542 GCCACATATCGGCGATCAAAT 59.193 47.619 27.61 11.94 40.35 2.32
4184 7691 2.413239 GCCACATATCGGCGATCAAATG 60.413 50.000 27.61 24.69 40.35 2.32
4185 7692 2.807967 CCACATATCGGCGATCAAATGT 59.192 45.455 27.61 25.34 0.00 2.71
4186 7693 3.993736 CCACATATCGGCGATCAAATGTA 59.006 43.478 27.06 11.64 0.00 2.29
4187 7694 4.091945 CCACATATCGGCGATCAAATGTAG 59.908 45.833 27.06 20.04 0.00 2.74
4188 7695 4.686091 CACATATCGGCGATCAAATGTAGT 59.314 41.667 27.06 13.92 0.00 2.73
4189 7696 5.177511 CACATATCGGCGATCAAATGTAGTT 59.822 40.000 27.06 10.07 0.00 2.24
4190 7697 5.405571 ACATATCGGCGATCAAATGTAGTTC 59.594 40.000 26.65 0.00 0.00 3.01
4191 7698 2.190161 TCGGCGATCAAATGTAGTTCG 58.810 47.619 4.99 0.00 0.00 3.95
4192 7699 1.257936 CGGCGATCAAATGTAGTTCGG 59.742 52.381 0.00 0.00 0.00 4.30
4193 7700 1.003866 GGCGATCAAATGTAGTTCGGC 60.004 52.381 1.54 1.54 45.71 5.54
4194 7701 1.332028 GCGATCAAATGTAGTTCGGCG 60.332 52.381 0.00 0.00 0.00 6.46
4195 7702 1.924524 CGATCAAATGTAGTTCGGCGT 59.075 47.619 6.85 0.00 0.00 5.68
4196 7703 3.110358 CGATCAAATGTAGTTCGGCGTA 58.890 45.455 6.85 0.00 0.00 4.42
4197 7704 3.061403 CGATCAAATGTAGTTCGGCGTAC 60.061 47.826 8.72 8.72 0.00 3.67
4198 7705 3.300852 TCAAATGTAGTTCGGCGTACA 57.699 42.857 18.71 14.47 33.75 2.90
4199 7706 3.651206 TCAAATGTAGTTCGGCGTACAA 58.349 40.909 18.71 4.47 32.98 2.41
4200 7707 4.056740 TCAAATGTAGTTCGGCGTACAAA 58.943 39.130 18.71 3.65 32.98 2.83
4201 7708 4.510711 TCAAATGTAGTTCGGCGTACAAAA 59.489 37.500 18.71 3.77 32.98 2.44
4202 7709 5.007430 TCAAATGTAGTTCGGCGTACAAAAA 59.993 36.000 18.71 2.14 32.98 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.829492 CCAATGACTTGATAAAGATCCCCC 59.171 45.833 0.00 0.00 34.04 5.40
20 21 8.863049 GCATGTTTTACCAATGACTTGATAAAG 58.137 33.333 0.00 0.00 33.01 1.85
22 23 7.890515 TGCATGTTTTACCAATGACTTGATAA 58.109 30.769 0.00 0.00 34.04 1.75
39 40 4.151258 CACTCGAGTTGATTGCATGTTT 57.849 40.909 17.26 0.00 0.00 2.83
79 80 2.372172 CCCAAGTGTCTGTTCCCTACTT 59.628 50.000 0.00 0.00 32.23 2.24
82 83 2.409064 TCCCAAGTGTCTGTTCCCTA 57.591 50.000 0.00 0.00 0.00 3.53
94 95 1.280710 TGTAATGCCACGATCCCAAGT 59.719 47.619 0.00 0.00 0.00 3.16
103 104 1.802636 CAGCCCTTGTAATGCCACG 59.197 57.895 0.00 0.00 0.00 4.94
105 106 2.045708 CGCAGCCCTTGTAATGCCA 61.046 57.895 0.00 0.00 35.22 4.92
112 113 2.925170 AGGTCTCGCAGCCCTTGT 60.925 61.111 0.00 0.00 0.00 3.16
128 129 1.589993 CGCAGCGTATGAGGGTGAG 60.590 63.158 6.65 0.00 33.79 3.51
131 132 1.068083 CATCGCAGCGTATGAGGGT 59.932 57.895 15.93 0.00 0.00 4.34
146 147 2.606725 CCAGCTCTTCATCGTTCACATC 59.393 50.000 0.00 0.00 0.00 3.06
157 158 5.195185 TCAATGATAAATGCCAGCTCTTCA 58.805 37.500 0.00 0.00 0.00 3.02
208 209 1.124780 TCTCGAAACAACCCCTCACA 58.875 50.000 0.00 0.00 0.00 3.58
230 231 3.842923 CAGGACTGGCTCGCCGAT 61.843 66.667 3.14 0.00 39.42 4.18
242 243 2.045926 ACGCTTGGCCATCAGGAC 60.046 61.111 6.09 0.00 46.36 3.85
294 295 5.269991 TCACTTAGTCCCAGTTATAGCAGT 58.730 41.667 0.00 0.00 0.00 4.40
296 297 6.408092 CCAATCACTTAGTCCCAGTTATAGCA 60.408 42.308 0.00 0.00 0.00 3.49
312 313 9.347240 CATCTTATGGAGAAATACCAATCACTT 57.653 33.333 0.00 0.00 40.93 3.16
389 392 8.755977 TCTCGTATACTCCCTTTGTAAAGAAAT 58.244 33.333 5.95 0.00 38.28 2.17
390 393 8.125978 TCTCGTATACTCCCTTTGTAAAGAAA 57.874 34.615 5.95 0.00 38.28 2.52
391 394 7.147949 CCTCTCGTATACTCCCTTTGTAAAGAA 60.148 40.741 5.95 0.00 38.28 2.52
392 395 6.320672 CCTCTCGTATACTCCCTTTGTAAAGA 59.679 42.308 5.95 0.00 38.28 2.52
393 396 6.320672 TCCTCTCGTATACTCCCTTTGTAAAG 59.679 42.308 0.56 0.00 35.79 1.85
394 397 6.189859 TCCTCTCGTATACTCCCTTTGTAAA 58.810 40.000 0.56 0.00 0.00 2.01
395 398 5.759059 TCCTCTCGTATACTCCCTTTGTAA 58.241 41.667 0.56 0.00 0.00 2.41
396 399 5.374921 CTCCTCTCGTATACTCCCTTTGTA 58.625 45.833 0.56 0.00 0.00 2.41
397 400 4.208746 CTCCTCTCGTATACTCCCTTTGT 58.791 47.826 0.56 0.00 0.00 2.83
398 401 3.004944 GCTCCTCTCGTATACTCCCTTTG 59.995 52.174 0.56 0.00 0.00 2.77
399 402 3.224269 GCTCCTCTCGTATACTCCCTTT 58.776 50.000 0.56 0.00 0.00 3.11
400 403 2.175069 TGCTCCTCTCGTATACTCCCTT 59.825 50.000 0.56 0.00 0.00 3.95
401 404 1.775459 TGCTCCTCTCGTATACTCCCT 59.225 52.381 0.56 0.00 0.00 4.20
402 405 2.273538 TGCTCCTCTCGTATACTCCC 57.726 55.000 0.56 0.00 0.00 4.30
403 406 2.293955 GGTTGCTCCTCTCGTATACTCC 59.706 54.545 0.56 0.00 0.00 3.85
404 407 2.950309 TGGTTGCTCCTCTCGTATACTC 59.050 50.000 0.56 0.00 37.07 2.59
405 408 3.014304 TGGTTGCTCCTCTCGTATACT 57.986 47.619 0.56 0.00 37.07 2.12
406 409 3.795623 TTGGTTGCTCCTCTCGTATAC 57.204 47.619 0.00 0.00 37.07 1.47
407 410 5.353394 AAATTGGTTGCTCCTCTCGTATA 57.647 39.130 0.80 0.00 37.07 1.47
408 411 3.914426 AATTGGTTGCTCCTCTCGTAT 57.086 42.857 0.80 0.00 37.07 3.06
409 412 3.695830 AAATTGGTTGCTCCTCTCGTA 57.304 42.857 0.80 0.00 37.07 3.43
436 439 7.253422 CCTAAACTGATCAACAATGACAATCC 58.747 38.462 0.00 0.00 38.69 3.01
437 440 7.121168 TCCCTAAACTGATCAACAATGACAATC 59.879 37.037 0.00 0.00 38.69 2.67
444 447 6.484643 CGATCATCCCTAAACTGATCAACAAT 59.515 38.462 11.14 0.00 43.46 2.71
450 453 4.873746 TCCGATCATCCCTAAACTGATC 57.126 45.455 0.00 0.00 41.10 2.92
459 462 1.615883 CGTCAGAATCCGATCATCCCT 59.384 52.381 0.00 0.00 0.00 4.20
493 505 8.621532 AAAATGACAGCTTCTGAAATACAGTA 57.378 30.769 0.29 0.00 45.86 2.74
494 506 7.446625 AGAAAATGACAGCTTCTGAAATACAGT 59.553 33.333 0.29 0.00 45.86 3.55
495 507 7.814642 AGAAAATGACAGCTTCTGAAATACAG 58.185 34.615 0.29 0.00 46.97 2.74
496 508 7.750229 AGAAAATGACAGCTTCTGAAATACA 57.250 32.000 0.29 0.00 35.18 2.29
497 509 9.468532 AAAAGAAAATGACAGCTTCTGAAATAC 57.531 29.630 0.29 0.00 35.18 1.89
670 712 1.030457 GAGCCGAAGAGAATACGGGA 58.970 55.000 0.00 0.00 45.66 5.14
711 757 0.691413 GGGGAGGGGGTGACTCTAAG 60.691 65.000 0.00 0.00 35.34 2.18
717 763 3.009714 GTCTGGGGAGGGGGTGAC 61.010 72.222 0.00 0.00 0.00 3.67
726 772 0.901580 GTGGTTCTACCGTCTGGGGA 60.902 60.000 0.00 0.00 42.58 4.81
727 773 1.595357 GTGGTTCTACCGTCTGGGG 59.405 63.158 0.00 0.00 42.58 4.96
728 774 1.214589 CGTGGTTCTACCGTCTGGG 59.785 63.158 0.00 0.00 42.58 4.45
729 775 1.214589 CCGTGGTTCTACCGTCTGG 59.785 63.158 0.00 0.00 42.58 3.86
731 777 0.829182 AACCCGTGGTTCTACCGTCT 60.829 55.000 2.81 0.00 43.05 4.18
735 797 1.002990 CCCAACCCGTGGTTCTACC 60.003 63.158 5.45 0.00 43.05 3.18
786 855 4.351874 TCATTTCAAGTTCCCTTCGTCT 57.648 40.909 0.00 0.00 0.00 4.18
800 869 7.218614 AGATGCAAACATTTCCTTTCATTTCA 58.781 30.769 0.00 0.00 36.35 2.69
801 870 7.662604 AGATGCAAACATTTCCTTTCATTTC 57.337 32.000 0.00 0.00 36.35 2.17
802 871 9.729281 AATAGATGCAAACATTTCCTTTCATTT 57.271 25.926 0.00 0.00 36.35 2.32
803 872 9.158233 CAATAGATGCAAACATTTCCTTTCATT 57.842 29.630 0.00 0.00 36.35 2.57
804 873 7.767198 CCAATAGATGCAAACATTTCCTTTCAT 59.233 33.333 0.00 0.00 36.35 2.57
839 908 1.135286 CGCCCTCCAAAAGAATTGAGC 60.135 52.381 0.00 0.00 0.00 4.26
848 917 1.173444 TTTTAGCGCGCCCTCCAAAA 61.173 50.000 30.33 21.36 0.00 2.44
914 984 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
915 985 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
916 986 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
917 987 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
918 988 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
919 989 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
920 990 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
921 991 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
922 992 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
923 993 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
924 994 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
925 995 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
926 996 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
927 997 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
928 998 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
929 999 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
930 1000 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
931 1001 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
932 1002 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
933 1003 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
934 1004 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
935 1005 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
936 1006 3.312890 CTCCCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
937 1007 2.370189 CCTCCCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
938 1008 2.412591 CCTCCCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
939 1009 1.421646 CCCTCCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
940 1010 1.010793 TCCCTCCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
941 1011 1.421646 CTCCCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
942 1012 1.522900 CTCCCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
943 1013 0.478507 CCTCCCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
944 1014 0.047176 TCCTCCCTCCCTCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
945 1015 0.478507 CTCCTCCCTCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
946 1016 0.047176 TCTCCTCCCTCCCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
947 1017 1.158007 ATCTCCTCCCTCCCTCTCTC 58.842 60.000 0.00 0.00 0.00 3.20
948 1018 2.358258 CTATCTCCTCCCTCCCTCTCT 58.642 57.143 0.00 0.00 0.00 3.10
958 1028 2.913060 ACGGCGGCTATCTCCTCC 60.913 66.667 13.24 0.00 0.00 4.30
959 1029 2.336809 CACGGCGGCTATCTCCTC 59.663 66.667 13.24 0.00 0.00 3.71
965 1035 4.873129 CACGAGCACGGCGGCTAT 62.873 66.667 20.03 10.69 45.99 2.97
977 1049 2.060980 CCCCTCTTCCTCCCACGAG 61.061 68.421 0.00 0.00 35.72 4.18
997 1069 2.107750 CAGCTCGATCGGCATGGT 59.892 61.111 24.07 12.31 0.00 3.55
1171 1243 4.115199 AGGGAAGATGTGGCGGGC 62.115 66.667 0.00 0.00 0.00 6.13
1220 1292 8.156820 TGAGATGAAAAGAAATGAAGGTACAGA 58.843 33.333 0.00 0.00 0.00 3.41
1224 1296 7.557719 GGGATGAGATGAAAAGAAATGAAGGTA 59.442 37.037 0.00 0.00 0.00 3.08
1225 1297 6.379417 GGGATGAGATGAAAAGAAATGAAGGT 59.621 38.462 0.00 0.00 0.00 3.50
1372 1452 2.539338 GCAGTGGTTGGCGTCGAAA 61.539 57.895 0.00 0.00 0.00 3.46
1407 1488 0.173708 GAATGAGAAGAGGACGGCGT 59.826 55.000 14.65 14.65 0.00 5.68
1408 1489 0.457851 AGAATGAGAAGAGGACGGCG 59.542 55.000 4.80 4.80 0.00 6.46
1409 1490 1.535015 CGAGAATGAGAAGAGGACGGC 60.535 57.143 0.00 0.00 0.00 5.68
1421 1502 7.952671 ACTAATGAGGTAATTAGCGAGAATGA 58.047 34.615 8.93 0.00 41.80 2.57
1436 1517 2.745152 GCGGTGGCAATACTAATGAGGT 60.745 50.000 0.00 0.00 39.62 3.85
1467 1548 3.984292 CGAGCAGCACAAGGATTTC 57.016 52.632 0.00 0.00 0.00 2.17
1719 1800 1.713597 TACTGATGAAGCAGCACACG 58.286 50.000 0.00 0.00 39.51 4.49
1746 1827 1.667830 CACACGGGTCGATTGCTGT 60.668 57.895 0.00 0.00 0.00 4.40
1754 1835 0.173481 ATGATGAGACACACGGGTCG 59.827 55.000 0.00 0.00 42.62 4.79
1780 1862 8.701895 AGATGCAATTGATCACCTGAAAAATAT 58.298 29.630 10.34 0.00 0.00 1.28
1898 1980 5.571784 TGTCCTTGTCGACGTATATCTTT 57.428 39.130 11.62 0.00 35.40 2.52
1915 1997 4.323104 GGTAGCACTCTGAATTCTTGTCCT 60.323 45.833 7.05 1.49 0.00 3.85
2010 2092 3.691342 CCGCTCTGACAACCGGGA 61.691 66.667 6.32 0.00 37.21 5.14
2021 2103 1.069765 CATATCCGTTGCCCGCTCT 59.930 57.895 0.00 0.00 34.38 4.09
2364 2447 5.696724 CAGTACGATTTCCATGAGGTATTCC 59.303 44.000 0.00 0.00 35.89 3.01
2383 2466 0.388649 CGGTGAGCCTGTGACAGTAC 60.389 60.000 12.15 3.27 0.00 2.73
2490 2573 2.635915 ACACCGGTCCTTCATCTTGTAA 59.364 45.455 2.59 0.00 0.00 2.41
2491 2574 2.253610 ACACCGGTCCTTCATCTTGTA 58.746 47.619 2.59 0.00 0.00 2.41
2492 2575 1.056660 ACACCGGTCCTTCATCTTGT 58.943 50.000 2.59 0.00 0.00 3.16
2493 2576 2.185004 AACACCGGTCCTTCATCTTG 57.815 50.000 2.59 0.00 0.00 3.02
2494 2577 2.635915 TGTAACACCGGTCCTTCATCTT 59.364 45.455 2.59 0.00 0.00 2.40
2495 2578 2.253610 TGTAACACCGGTCCTTCATCT 58.746 47.619 2.59 0.00 0.00 2.90
2496 2579 2.754946 TGTAACACCGGTCCTTCATC 57.245 50.000 2.59 0.00 0.00 2.92
2497 2580 2.635915 TCTTGTAACACCGGTCCTTCAT 59.364 45.455 2.59 0.00 0.00 2.57
2498 2581 2.040939 TCTTGTAACACCGGTCCTTCA 58.959 47.619 2.59 0.00 0.00 3.02
2499 2582 2.825861 TCTTGTAACACCGGTCCTTC 57.174 50.000 2.59 0.00 0.00 3.46
2500 2583 3.782656 AATCTTGTAACACCGGTCCTT 57.217 42.857 2.59 0.84 0.00 3.36
2501 2584 3.782656 AAATCTTGTAACACCGGTCCT 57.217 42.857 2.59 0.00 0.00 3.85
2502 2585 3.610821 GCAAAATCTTGTAACACCGGTCC 60.611 47.826 2.59 0.00 34.79 4.46
2503 2586 3.003897 TGCAAAATCTTGTAACACCGGTC 59.996 43.478 2.59 0.00 34.79 4.79
2504 2587 2.952978 TGCAAAATCTTGTAACACCGGT 59.047 40.909 0.00 0.00 34.79 5.28
2505 2588 3.634568 TGCAAAATCTTGTAACACCGG 57.365 42.857 0.00 0.00 34.79 5.28
2506 2589 5.689514 TCAATTGCAAAATCTTGTAACACCG 59.310 36.000 1.71 0.00 39.54 4.94
2507 2590 6.146021 CCTCAATTGCAAAATCTTGTAACACC 59.854 38.462 1.71 0.00 39.54 4.16
2508 2591 6.701400 ACCTCAATTGCAAAATCTTGTAACAC 59.299 34.615 1.71 0.00 39.54 3.32
2509 2592 6.700960 CACCTCAATTGCAAAATCTTGTAACA 59.299 34.615 1.71 0.00 39.54 2.41
2510 2593 6.146021 CCACCTCAATTGCAAAATCTTGTAAC 59.854 38.462 1.71 0.00 39.54 2.50
3092 3268 1.277557 CTGTACAGCCTCCTCAGCTTT 59.722 52.381 10.54 0.00 38.95 3.51
3146 3322 1.133575 CCCATGAGCTCCACCAATGAT 60.134 52.381 12.15 0.00 0.00 2.45
3209 3385 6.036470 GCTATGATAACAAAAGGCCTTTCAC 58.964 40.000 30.49 17.13 31.45 3.18
3250 3426 4.262420 GGGATTTGAGACAGATCTAGAGCC 60.262 50.000 3.92 0.00 34.34 4.70
3260 3437 2.082231 CTGCACAGGGATTTGAGACAG 58.918 52.381 0.00 0.00 0.00 3.51
3347 3535 4.943705 GCCAAGACCATATCAAGAACTGAA 59.056 41.667 0.00 0.00 37.67 3.02
3514 3702 3.958147 AAGGCTCGGCGTGGACATG 62.958 63.158 6.85 0.00 0.00 3.21
3515 3703 3.706373 AAGGCTCGGCGTGGACAT 61.706 61.111 6.85 0.00 0.00 3.06
3527 3778 0.962356 CGAAATCCACCAGCAAGGCT 60.962 55.000 0.00 0.00 43.14 4.58
3692 3943 5.002464 ACATACAACCGTCATACACCTAC 57.998 43.478 0.00 0.00 0.00 3.18
3831 7338 7.278424 CCAAATGTTGTTGTCCATCCATATTTC 59.722 37.037 0.00 0.00 0.00 2.17
3958 7465 1.880340 CGAACGGCTGGAGATGCTC 60.880 63.158 0.00 0.00 0.00 4.26
3959 7466 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
3960 7467 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
3981 7488 3.747976 CTTTTTCGGCGCCCTGGG 61.748 66.667 23.46 8.86 0.00 4.45
3982 7489 2.671619 TCTTTTTCGGCGCCCTGG 60.672 61.111 23.46 7.26 0.00 4.45
3983 7490 2.870372 CTCTTTTTCGGCGCCCTG 59.130 61.111 23.46 8.15 0.00 4.45
3984 7491 3.056328 GCTCTTTTTCGGCGCCCT 61.056 61.111 23.46 0.00 0.00 5.19
3985 7492 4.460873 CGCTCTTTTTCGGCGCCC 62.461 66.667 23.46 2.84 42.28 6.13
3986 7493 4.460873 CCGCTCTTTTTCGGCGCC 62.461 66.667 19.07 19.07 46.29 6.53
3991 7498 2.690778 CCCAGGCCGCTCTTTTTCG 61.691 63.158 0.00 0.00 0.00 3.46
3992 7499 2.343426 CCCCAGGCCGCTCTTTTTC 61.343 63.158 0.00 0.00 0.00 2.29
3993 7500 2.283173 CCCCAGGCCGCTCTTTTT 60.283 61.111 0.00 0.00 0.00 1.94
3994 7501 4.366684 CCCCCAGGCCGCTCTTTT 62.367 66.667 0.00 0.00 0.00 2.27
4016 7523 2.900337 GGGCCGAAATAGCACCGG 60.900 66.667 0.00 0.00 45.51 5.28
4017 7524 2.180204 CAGGGCCGAAATAGCACCG 61.180 63.158 0.00 0.00 32.58 4.94
4018 7525 1.823899 CCAGGGCCGAAATAGCACC 60.824 63.158 0.00 0.00 32.58 5.01
4019 7526 1.823899 CCCAGGGCCGAAATAGCAC 60.824 63.158 0.00 0.00 0.00 4.40
4020 7527 2.595095 CCCAGGGCCGAAATAGCA 59.405 61.111 0.00 0.00 0.00 3.49
4021 7528 2.203351 CCCCAGGGCCGAAATAGC 60.203 66.667 0.00 0.00 0.00 2.97
4022 7529 0.465642 GAACCCCAGGGCCGAAATAG 60.466 60.000 0.00 0.00 39.32 1.73
4023 7530 1.208844 TGAACCCCAGGGCCGAAATA 61.209 55.000 0.00 0.00 39.32 1.40
4024 7531 1.874299 ATGAACCCCAGGGCCGAAAT 61.874 55.000 0.00 0.00 39.32 2.17
4025 7532 2.087857 AATGAACCCCAGGGCCGAAA 62.088 55.000 0.00 0.00 39.32 3.46
4026 7533 2.087857 AAATGAACCCCAGGGCCGAA 62.088 55.000 0.00 0.00 39.32 4.30
4027 7534 2.493273 GAAATGAACCCCAGGGCCGA 62.493 60.000 0.00 0.00 39.32 5.54
4028 7535 2.037208 AAATGAACCCCAGGGCCG 59.963 61.111 0.00 0.00 39.32 6.13
4029 7536 0.252239 AAGAAATGAACCCCAGGGCC 60.252 55.000 0.00 0.00 39.32 5.80
4030 7537 1.186200 GAAGAAATGAACCCCAGGGC 58.814 55.000 0.00 0.00 39.32 5.19
4031 7538 1.619704 GGGAAGAAATGAACCCCAGGG 60.620 57.143 0.00 0.00 42.03 4.45
4032 7539 1.077005 TGGGAAGAAATGAACCCCAGG 59.923 52.381 0.00 0.00 41.78 4.45
4033 7540 2.603075 TGGGAAGAAATGAACCCCAG 57.397 50.000 0.00 0.00 41.78 4.45
4034 7541 1.549950 GCTGGGAAGAAATGAACCCCA 60.550 52.381 0.00 0.00 44.21 4.96
4035 7542 1.186200 GCTGGGAAGAAATGAACCCC 58.814 55.000 0.00 0.00 41.44 4.95
4036 7543 1.186200 GGCTGGGAAGAAATGAACCC 58.814 55.000 0.00 0.00 42.37 4.11
4037 7544 1.546029 GTGGCTGGGAAGAAATGAACC 59.454 52.381 0.00 0.00 0.00 3.62
4038 7545 1.200020 CGTGGCTGGGAAGAAATGAAC 59.800 52.381 0.00 0.00 0.00 3.18
4039 7546 1.533625 CGTGGCTGGGAAGAAATGAA 58.466 50.000 0.00 0.00 0.00 2.57
4040 7547 0.960364 GCGTGGCTGGGAAGAAATGA 60.960 55.000 0.00 0.00 0.00 2.57
4041 7548 1.508088 GCGTGGCTGGGAAGAAATG 59.492 57.895 0.00 0.00 0.00 2.32
4042 7549 2.040544 CGCGTGGCTGGGAAGAAAT 61.041 57.895 0.00 0.00 0.00 2.17
4043 7550 2.668212 CGCGTGGCTGGGAAGAAA 60.668 61.111 0.00 0.00 0.00 2.52
4065 7572 4.105553 GCCTTCGGGGGTGGTACC 62.106 72.222 4.43 4.43 37.60 3.34
4066 7573 4.462280 CGCCTTCGGGGGTGGTAC 62.462 72.222 1.17 0.00 42.33 3.34
4073 7580 2.397413 AATATGGAGCGCCTTCGGGG 62.397 60.000 8.34 0.00 38.76 5.73
4074 7581 0.951040 GAATATGGAGCGCCTTCGGG 60.951 60.000 8.34 0.00 35.95 5.14
4075 7582 1.284982 CGAATATGGAGCGCCTTCGG 61.285 60.000 17.74 3.87 36.36 4.30
4076 7583 0.318699 TCGAATATGGAGCGCCTTCG 60.319 55.000 18.93 18.93 39.42 3.79
4077 7584 1.865865 TTCGAATATGGAGCGCCTTC 58.134 50.000 8.34 2.32 34.31 3.46
4078 7585 2.325583 TTTCGAATATGGAGCGCCTT 57.674 45.000 8.34 3.72 34.31 4.35
4079 7586 2.550830 ATTTCGAATATGGAGCGCCT 57.449 45.000 8.34 0.00 34.31 5.52
4080 7587 2.548057 TGAATTTCGAATATGGAGCGCC 59.452 45.455 2.29 0.00 0.00 6.53
4081 7588 3.878086 TGAATTTCGAATATGGAGCGC 57.122 42.857 0.00 0.00 0.00 5.92
4082 7589 5.596268 TGATGAATTTCGAATATGGAGCG 57.404 39.130 0.00 0.00 0.00 5.03
4083 7590 7.025963 GGAATGATGAATTTCGAATATGGAGC 58.974 38.462 0.00 0.00 0.00 4.70
4084 7591 7.533426 GGGAATGATGAATTTCGAATATGGAG 58.467 38.462 0.00 0.00 0.00 3.86
4085 7592 6.149308 CGGGAATGATGAATTTCGAATATGGA 59.851 38.462 0.00 0.00 31.21 3.41
4086 7593 6.317088 CGGGAATGATGAATTTCGAATATGG 58.683 40.000 0.00 0.00 31.21 2.74
4087 7594 5.796935 GCGGGAATGATGAATTTCGAATATG 59.203 40.000 0.00 0.00 31.21 1.78
4088 7595 5.707298 AGCGGGAATGATGAATTTCGAATAT 59.293 36.000 0.00 0.00 31.21 1.28
4089 7596 5.063204 AGCGGGAATGATGAATTTCGAATA 58.937 37.500 0.00 0.00 31.21 1.75
4090 7597 3.885297 AGCGGGAATGATGAATTTCGAAT 59.115 39.130 0.00 0.00 31.21 3.34
4091 7598 3.278574 AGCGGGAATGATGAATTTCGAA 58.721 40.909 0.00 0.00 31.21 3.71
4092 7599 2.872245 GAGCGGGAATGATGAATTTCGA 59.128 45.455 0.00 0.00 31.21 3.71
4093 7600 2.613595 TGAGCGGGAATGATGAATTTCG 59.386 45.455 0.00 0.00 0.00 3.46
4094 7601 4.637483 TTGAGCGGGAATGATGAATTTC 57.363 40.909 0.00 0.00 0.00 2.17
4095 7602 4.706476 TCTTTGAGCGGGAATGATGAATTT 59.294 37.500 0.00 0.00 0.00 1.82
4096 7603 4.272489 TCTTTGAGCGGGAATGATGAATT 58.728 39.130 0.00 0.00 0.00 2.17
4097 7604 3.889815 TCTTTGAGCGGGAATGATGAAT 58.110 40.909 0.00 0.00 0.00 2.57
4098 7605 3.348647 TCTTTGAGCGGGAATGATGAA 57.651 42.857 0.00 0.00 0.00 2.57
4099 7606 3.348647 TTCTTTGAGCGGGAATGATGA 57.651 42.857 0.00 0.00 0.00 2.92
4100 7607 3.191162 TGTTTCTTTGAGCGGGAATGATG 59.809 43.478 0.00 0.00 0.00 3.07
4101 7608 3.420893 TGTTTCTTTGAGCGGGAATGAT 58.579 40.909 0.00 0.00 0.00 2.45
4102 7609 2.857483 TGTTTCTTTGAGCGGGAATGA 58.143 42.857 0.00 0.00 0.00 2.57
4103 7610 3.243367 TGTTGTTTCTTTGAGCGGGAATG 60.243 43.478 0.00 0.00 0.00 2.67
4104 7611 2.955660 TGTTGTTTCTTTGAGCGGGAAT 59.044 40.909 0.00 0.00 0.00 3.01
4105 7612 2.370349 TGTTGTTTCTTTGAGCGGGAA 58.630 42.857 0.00 0.00 0.00 3.97
4106 7613 2.045561 TGTTGTTTCTTTGAGCGGGA 57.954 45.000 0.00 0.00 0.00 5.14
4107 7614 2.857748 GTTTGTTGTTTCTTTGAGCGGG 59.142 45.455 0.00 0.00 0.00 6.13
4108 7615 2.857748 GGTTTGTTGTTTCTTTGAGCGG 59.142 45.455 0.00 0.00 0.00 5.52
4109 7616 2.529894 CGGTTTGTTGTTTCTTTGAGCG 59.470 45.455 0.00 0.00 0.00 5.03
4110 7617 2.857748 CCGGTTTGTTGTTTCTTTGAGC 59.142 45.455 0.00 0.00 0.00 4.26
4111 7618 2.857748 GCCGGTTTGTTGTTTCTTTGAG 59.142 45.455 1.90 0.00 0.00 3.02
4112 7619 2.732597 CGCCGGTTTGTTGTTTCTTTGA 60.733 45.455 1.90 0.00 0.00 2.69
4113 7620 1.586123 CGCCGGTTTGTTGTTTCTTTG 59.414 47.619 1.90 0.00 0.00 2.77
4114 7621 1.473278 TCGCCGGTTTGTTGTTTCTTT 59.527 42.857 1.90 0.00 0.00 2.52
4115 7622 1.096416 TCGCCGGTTTGTTGTTTCTT 58.904 45.000 1.90 0.00 0.00 2.52
4116 7623 1.265905 GATCGCCGGTTTGTTGTTTCT 59.734 47.619 1.90 0.00 0.00 2.52
4117 7624 1.002251 TGATCGCCGGTTTGTTGTTTC 60.002 47.619 1.90 0.00 0.00 2.78
4118 7625 1.025812 TGATCGCCGGTTTGTTGTTT 58.974 45.000 1.90 0.00 0.00 2.83
4119 7626 1.199097 GATGATCGCCGGTTTGTTGTT 59.801 47.619 1.90 0.00 0.00 2.83
4120 7627 0.802494 GATGATCGCCGGTTTGTTGT 59.198 50.000 1.90 0.00 0.00 3.32
4121 7628 0.247655 CGATGATCGCCGGTTTGTTG 60.248 55.000 0.41 0.00 31.14 3.33
4122 7629 2.086510 CGATGATCGCCGGTTTGTT 58.913 52.632 0.41 0.00 31.14 2.83
4123 7630 3.794270 CGATGATCGCCGGTTTGT 58.206 55.556 0.41 0.00 31.14 2.83
4142 7649 3.433615 GCACTATGAATGGCCGAACTATC 59.566 47.826 0.00 0.00 0.00 2.08
4143 7650 3.403038 GCACTATGAATGGCCGAACTAT 58.597 45.455 0.00 0.00 0.00 2.12
4144 7651 2.484770 GGCACTATGAATGGCCGAACTA 60.485 50.000 0.00 0.00 36.58 2.24
4145 7652 1.668419 GCACTATGAATGGCCGAACT 58.332 50.000 0.00 0.00 0.00 3.01
4146 7653 0.663153 GGCACTATGAATGGCCGAAC 59.337 55.000 0.00 0.00 36.58 3.95
4147 7654 3.094386 GGCACTATGAATGGCCGAA 57.906 52.632 0.00 0.00 36.58 4.30
4148 7655 4.876701 GGCACTATGAATGGCCGA 57.123 55.556 0.00 0.00 36.58 5.54
4150 7657 1.696063 ATGTGGCACTATGAATGGCC 58.304 50.000 19.83 0.00 46.58 5.36
4151 7658 3.125829 CGATATGTGGCACTATGAATGGC 59.874 47.826 19.83 0.00 42.74 4.40
4152 7659 3.686241 CCGATATGTGGCACTATGAATGG 59.314 47.826 19.83 8.18 0.00 3.16
4153 7660 4.934075 CCGATATGTGGCACTATGAATG 57.066 45.455 19.83 2.82 0.00 2.67
4164 7671 2.807967 ACATTTGATCGCCGATATGTGG 59.192 45.455 11.95 0.63 0.00 4.17
4165 7672 4.686091 ACTACATTTGATCGCCGATATGTG 59.314 41.667 19.20 13.16 0.00 3.21
4166 7673 4.883083 ACTACATTTGATCGCCGATATGT 58.117 39.130 15.81 15.81 0.00 2.29
4167 7674 5.443301 CGAACTACATTTGATCGCCGATATG 60.443 44.000 0.00 3.01 0.00 1.78
4168 7675 4.621460 CGAACTACATTTGATCGCCGATAT 59.379 41.667 0.00 0.00 0.00 1.63
4169 7676 3.978855 CGAACTACATTTGATCGCCGATA 59.021 43.478 0.00 0.00 0.00 2.92
4170 7677 2.794910 CGAACTACATTTGATCGCCGAT 59.205 45.455 0.00 0.00 0.00 4.18
4171 7678 2.190161 CGAACTACATTTGATCGCCGA 58.810 47.619 0.00 0.00 0.00 5.54
4172 7679 1.257936 CCGAACTACATTTGATCGCCG 59.742 52.381 0.00 0.00 32.46 6.46
4173 7680 1.003866 GCCGAACTACATTTGATCGCC 60.004 52.381 0.00 0.00 32.46 5.54
4174 7681 1.332028 CGCCGAACTACATTTGATCGC 60.332 52.381 0.00 0.00 32.46 4.58
4175 7682 1.924524 ACGCCGAACTACATTTGATCG 59.075 47.619 0.00 0.00 0.00 3.69
4176 7683 3.861113 TGTACGCCGAACTACATTTGATC 59.139 43.478 0.00 0.00 0.00 2.92
4177 7684 3.852286 TGTACGCCGAACTACATTTGAT 58.148 40.909 0.00 0.00 0.00 2.57
4178 7685 3.300852 TGTACGCCGAACTACATTTGA 57.699 42.857 0.00 0.00 0.00 2.69
4179 7686 4.392619 TTTGTACGCCGAACTACATTTG 57.607 40.909 0.00 0.00 0.00 2.32
4180 7687 5.421212 TTTTTGTACGCCGAACTACATTT 57.579 34.783 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.