Multiple sequence alignment - TraesCS7B01G224300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G224300 chr7B 100.000 2511 0 0 2616 5126 424062880 424060370 0.000000e+00 4638.0
1 TraesCS7B01G224300 chr7B 100.000 2384 0 0 1 2384 424065495 424063112 0.000000e+00 4403.0
2 TraesCS7B01G224300 chr7B 95.833 192 8 0 3307 3498 295365991 295366182 1.390000e-80 311.0
3 TraesCS7B01G224300 chr7B 95.312 192 9 0 3307 3498 20765816 20766007 6.450000e-79 305.0
4 TraesCS7B01G224300 chr7A 86.618 2339 155 84 119 2384 470601387 470599134 0.000000e+00 2440.0
5 TraesCS7B01G224300 chr7A 84.279 916 89 25 3551 4429 470597937 470597040 0.000000e+00 843.0
6 TraesCS7B01G224300 chr7A 97.548 367 9 0 4758 5124 470596778 470596412 3.370000e-176 628.0
7 TraesCS7B01G224300 chr7A 92.149 242 16 1 4492 4730 470597002 470596761 6.360000e-89 339.0
8 TraesCS7B01G224300 chr7A 83.688 282 29 7 2647 2918 470598629 470598355 3.060000e-62 250.0
9 TraesCS7B01G224300 chr7A 100.000 52 0 0 3498 3549 275450410 275450359 4.220000e-16 97.1
10 TraesCS7B01G224300 chr7D 89.785 1674 85 47 770 2383 409516250 409514603 0.000000e+00 2065.0
11 TraesCS7B01G224300 chr7D 89.627 1610 98 34 3551 5126 409513635 409512061 0.000000e+00 1984.0
12 TraesCS7B01G224300 chr7D 93.566 715 26 9 1 703 409517290 409516584 0.000000e+00 1048.0
13 TraesCS7B01G224300 chr3B 96.354 192 6 1 3307 3498 238909157 238909347 1.070000e-81 315.0
14 TraesCS7B01G224300 chr3B 94.872 195 10 0 3307 3501 449377669 449377475 6.450000e-79 305.0
15 TraesCS7B01G224300 chr3B 94.872 195 10 0 3307 3501 640101929 640101735 6.450000e-79 305.0
16 TraesCS7B01G224300 chr3B 94.444 198 10 1 3307 3503 447928254 447928451 2.320000e-78 303.0
17 TraesCS7B01G224300 chr1B 95.833 192 8 0 3307 3498 409228057 409227866 1.390000e-80 311.0
18 TraesCS7B01G224300 chr1B 94.924 197 9 1 3307 3503 583459572 583459377 1.790000e-79 307.0
19 TraesCS7B01G224300 chr1B 94.872 195 10 0 3307 3501 114748073 114747879 6.450000e-79 305.0
20 TraesCS7B01G224300 chr5A 85.027 187 22 3 3 185 468470360 468470176 8.760000e-43 185.0
21 TraesCS7B01G224300 chr6B 100.000 52 0 0 3498 3549 226889829 226889880 4.220000e-16 97.1
22 TraesCS7B01G224300 chr2D 100.000 52 0 0 3498 3549 443716752 443716701 4.220000e-16 97.1
23 TraesCS7B01G224300 chr6D 100.000 51 0 0 3499 3549 158762513 158762463 1.520000e-15 95.3
24 TraesCS7B01G224300 chr6D 100.000 51 0 0 3499 3549 362825034 362824984 1.520000e-15 95.3
25 TraesCS7B01G224300 chr5D 100.000 51 0 0 3499 3549 235465360 235465410 1.520000e-15 95.3
26 TraesCS7B01G224300 chr1D 100.000 51 0 0 3499 3549 144625244 144625194 1.520000e-15 95.3
27 TraesCS7B01G224300 chr1D 100.000 51 0 0 3499 3549 194850838 194850888 1.520000e-15 95.3
28 TraesCS7B01G224300 chr1D 100.000 51 0 0 3499 3549 209216356 209216406 1.520000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G224300 chr7B 424060370 424065495 5125 True 4520.5 4638 100.000000 1 5126 2 chr7B.!!$R1 5125
1 TraesCS7B01G224300 chr7A 470596412 470601387 4975 True 900.0 2440 88.856400 119 5124 5 chr7A.!!$R2 5005
2 TraesCS7B01G224300 chr7D 409512061 409517290 5229 True 1699.0 2065 90.992667 1 5126 3 chr7D.!!$R1 5125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 420 0.527600 CACGCTATTACGCTGAGGCA 60.528 55.0 0.00 0.0 38.60 4.75 F
1251 1546 0.041238 TCATCCAGGACTCGGAGGTT 59.959 55.0 10.23 0.0 35.79 3.50 F
1254 1549 0.471211 TCCAGGACTCGGAGGTTTGT 60.471 55.0 10.23 0.0 0.00 2.83 F
2196 2547 0.737715 CTCTACTCGGCACAACCTGC 60.738 60.0 0.00 0.0 46.31 4.85 F
3193 3833 0.108186 TCCTATCTGTTGCCAGTGCG 60.108 55.0 0.00 0.0 41.78 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 2051 0.462789 GCCCCAGCTCAAATTGATGG 59.537 55.000 8.31 8.31 35.50 3.51 R
3047 3685 0.034896 AGGGTGTAAACCGTGCAGAG 59.965 55.000 0.00 0.00 0.00 3.35 R
3097 3736 0.250770 AGCCTCGAACAGGTTTTCCC 60.251 55.000 0.00 0.00 45.61 3.97 R
3483 4124 0.040499 TTGCTAAATGGTGGGTCCCC 59.960 55.000 5.13 0.00 34.77 4.81 R
4627 5316 1.071987 TCAGTTCTGCCAGCACAGG 59.928 57.895 0.00 0.00 38.26 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.405821 CGGTTCGCCACTTCTATCTCT 59.594 52.381 0.00 0.00 37.00 3.10
87 88 2.224159 ATGTGTTCGACTGGGCCCT 61.224 57.895 25.70 2.15 0.00 5.19
162 167 2.202440 GCGCGTACGAGAAGCTGA 60.202 61.111 23.53 0.00 43.93 4.26
200 205 6.164876 ACAAATTTTCATCGATTGCAATCCA 58.835 32.000 29.10 20.22 31.68 3.41
255 260 2.760634 TTGCGGATTCAGTGAAGCTA 57.239 45.000 19.77 8.14 0.00 3.32
272 277 3.357203 AGCTAGAGGACATTCGAACAGA 58.643 45.455 0.00 0.00 0.00 3.41
311 316 7.409358 AGCTAGAGATGAGTGATCCATGTATA 58.591 38.462 0.00 0.00 0.00 1.47
405 415 1.081556 TGGCACACGCTATTACGCTG 61.082 55.000 0.00 0.00 38.60 5.18
410 420 0.527600 CACGCTATTACGCTGAGGCA 60.528 55.000 0.00 0.00 38.60 4.75
435 445 4.021925 GGAGGCCGTGTTGCTCCT 62.022 66.667 0.00 0.00 0.00 3.69
436 446 2.032681 GAGGCCGTGTTGCTCCTT 59.967 61.111 0.00 0.00 0.00 3.36
437 447 2.032681 AGGCCGTGTTGCTCCTTC 59.967 61.111 0.00 0.00 0.00 3.46
438 448 2.281484 GGCCGTGTTGCTCCTTCA 60.281 61.111 0.00 0.00 0.00 3.02
447 461 2.629137 TGTTGCTCCTTCATGTTTGCAT 59.371 40.909 0.00 0.00 35.32 3.96
451 465 3.441222 TGCTCCTTCATGTTTGCATACTG 59.559 43.478 8.78 4.96 33.30 2.74
459 473 4.694982 TCATGTTTGCATACTGATGTTCGT 59.305 37.500 8.78 0.00 35.30 3.85
514 530 4.322198 CCAGCCGTTTAGGACTAGTACAAA 60.322 45.833 8.10 3.41 45.00 2.83
520 536 7.384932 GCCGTTTAGGACTAGTACAAAGTAAAA 59.615 37.037 8.10 0.00 45.00 1.52
554 570 4.970711 ACCAATTTTGATTGCAATCACCA 58.029 34.783 35.75 26.21 44.54 4.17
561 577 3.093814 TGATTGCAATCACCATGCTTCT 58.906 40.909 33.08 0.00 44.14 2.85
631 654 0.894835 CCACCATTGGTACTTTGGCC 59.105 55.000 8.31 0.00 38.23 5.36
695 718 3.334583 TCTGTGTGATAGGCTCAAACC 57.665 47.619 0.00 0.00 40.87 3.27
704 727 2.533318 GGCTCAAACCGAGTCACAG 58.467 57.895 0.00 0.00 46.30 3.66
718 741 3.555966 AGTCACAGAACAAAGGAAAGGG 58.444 45.455 0.00 0.00 0.00 3.95
732 755 1.478105 GAAAGGGGCAATGAAAGCGAT 59.522 47.619 0.00 0.00 0.00 4.58
762 785 3.618690 TTTGGGTGTTTTGTTTGAGGG 57.381 42.857 0.00 0.00 0.00 4.30
763 786 1.490574 TGGGTGTTTTGTTTGAGGGG 58.509 50.000 0.00 0.00 0.00 4.79
764 787 1.273324 TGGGTGTTTTGTTTGAGGGGT 60.273 47.619 0.00 0.00 0.00 4.95
765 788 2.024273 TGGGTGTTTTGTTTGAGGGGTA 60.024 45.455 0.00 0.00 0.00 3.69
766 789 3.032459 GGGTGTTTTGTTTGAGGGGTAA 58.968 45.455 0.00 0.00 0.00 2.85
803 1092 9.508642 ACAAAAAGTTTGAAGGGTAATGAAAAA 57.491 25.926 7.68 0.00 0.00 1.94
804 1093 9.767684 CAAAAAGTTTGAAGGGTAATGAAAAAC 57.232 29.630 0.00 0.00 0.00 2.43
805 1094 7.764695 AAAGTTTGAAGGGTAATGAAAAACG 57.235 32.000 0.00 0.00 32.67 3.60
806 1095 6.702716 AGTTTGAAGGGTAATGAAAAACGA 57.297 33.333 0.00 0.00 32.67 3.85
808 1097 5.699097 TTGAAGGGTAATGAAAAACGAGG 57.301 39.130 0.00 0.00 0.00 4.63
809 1098 4.721132 TGAAGGGTAATGAAAAACGAGGT 58.279 39.130 0.00 0.00 0.00 3.85
810 1099 4.517453 TGAAGGGTAATGAAAAACGAGGTG 59.483 41.667 0.00 0.00 0.00 4.00
811 1100 2.817844 AGGGTAATGAAAAACGAGGTGC 59.182 45.455 0.00 0.00 0.00 5.01
812 1101 2.554893 GGGTAATGAAAAACGAGGTGCA 59.445 45.455 0.00 0.00 0.00 4.57
813 1102 3.365969 GGGTAATGAAAAACGAGGTGCAG 60.366 47.826 0.00 0.00 0.00 4.41
905 1199 6.853490 AGAAGGAAGAATAAACAGAAAGGGT 58.147 36.000 0.00 0.00 0.00 4.34
1008 1303 0.678048 GAGAGAAAACCATGGCGGCT 60.678 55.000 13.04 3.99 39.03 5.52
1170 1465 4.278419 GCCAACAACTCCAACTACAAGAAT 59.722 41.667 0.00 0.00 0.00 2.40
1251 1546 0.041238 TCATCCAGGACTCGGAGGTT 59.959 55.000 10.23 0.00 35.79 3.50
1252 1547 0.905357 CATCCAGGACTCGGAGGTTT 59.095 55.000 10.23 0.00 35.56 3.27
1253 1548 0.905357 ATCCAGGACTCGGAGGTTTG 59.095 55.000 10.23 4.20 35.56 2.93
1254 1549 0.471211 TCCAGGACTCGGAGGTTTGT 60.471 55.000 10.23 0.00 0.00 2.83
1259 1554 2.701951 AGGACTCGGAGGTTTGTTTGTA 59.298 45.455 10.23 0.00 0.00 2.41
1473 1770 0.757188 AGATCGGCTCCCTCGTTGAT 60.757 55.000 0.00 0.00 0.00 2.57
1539 1837 2.545952 CCTCGTCCAGGTAATCCATTCG 60.546 54.545 0.00 0.00 37.53 3.34
1556 1854 3.848272 TTCGCATTCTTTCCCAATCAC 57.152 42.857 0.00 0.00 0.00 3.06
1558 1856 1.818060 CGCATTCTTTCCCAATCACCA 59.182 47.619 0.00 0.00 0.00 4.17
1561 1859 4.186159 GCATTCTTTCCCAATCACCATTG 58.814 43.478 0.00 0.00 39.45 2.82
1562 1860 3.959535 TTCTTTCCCAATCACCATTGC 57.040 42.857 0.00 0.00 38.53 3.56
1563 1861 2.886913 TCTTTCCCAATCACCATTGCA 58.113 42.857 0.00 0.00 38.53 4.08
1564 1862 2.562298 TCTTTCCCAATCACCATTGCAC 59.438 45.455 0.00 0.00 38.53 4.57
1565 1863 2.006805 TTCCCAATCACCATTGCACA 57.993 45.000 0.00 0.00 38.53 4.57
1566 1864 2.234896 TCCCAATCACCATTGCACAT 57.765 45.000 0.00 0.00 38.53 3.21
1570 1868 4.099727 TCCCAATCACCATTGCACATATTG 59.900 41.667 0.00 0.00 38.53 1.90
1572 1870 4.373527 CAATCACCATTGCACATATTGGG 58.626 43.478 0.00 0.00 33.19 4.12
1573 1871 3.098774 TCACCATTGCACATATTGGGT 57.901 42.857 0.00 0.00 33.39 4.51
1575 1873 2.759535 CACCATTGCACATATTGGGTCA 59.240 45.455 0.00 0.00 33.39 4.02
1576 1874 3.385433 CACCATTGCACATATTGGGTCAT 59.615 43.478 0.00 0.00 33.39 3.06
1577 1875 3.385433 ACCATTGCACATATTGGGTCATG 59.615 43.478 0.00 0.00 33.39 3.07
1578 1876 3.385433 CCATTGCACATATTGGGTCATGT 59.615 43.478 0.00 0.00 35.79 3.21
1579 1877 4.500205 CCATTGCACATATTGGGTCATGTC 60.500 45.833 0.00 0.00 33.12 3.06
1580 1878 3.650281 TGCACATATTGGGTCATGTCT 57.350 42.857 0.00 0.00 33.12 3.41
1581 1879 3.966979 TGCACATATTGGGTCATGTCTT 58.033 40.909 0.00 0.00 33.12 3.01
1582 1880 5.109500 TGCACATATTGGGTCATGTCTTA 57.891 39.130 0.00 0.00 33.12 2.10
1596 1920 3.026630 TGTCTTAGTGTGAGCTTTCCG 57.973 47.619 0.00 0.00 0.00 4.30
1603 1928 1.002792 GTGTGAGCTTTCCGTTGGAAC 60.003 52.381 0.00 0.00 41.87 3.62
1642 1967 1.068472 AGTCTTACTCACTTGGTCGCG 60.068 52.381 0.00 0.00 0.00 5.87
1652 1977 1.334243 ACTTGGTCGCGTATCTAGAGC 59.666 52.381 5.77 0.00 0.00 4.09
1692 2020 7.339482 ACTCAAATGTTTCTCTAGGGGTATTC 58.661 38.462 0.00 0.00 0.00 1.75
1693 2021 6.346096 TCAAATGTTTCTCTAGGGGTATTCG 58.654 40.000 0.00 0.00 0.00 3.34
1694 2022 5.952347 AATGTTTCTCTAGGGGTATTCGT 57.048 39.130 0.00 0.00 0.00 3.85
1700 2028 3.773119 TCTCTAGGGGTATTCGTTGCTTT 59.227 43.478 0.00 0.00 0.00 3.51
1718 2046 3.883489 GCTTTGTACAAACTGGGAAGACT 59.117 43.478 17.01 0.00 0.00 3.24
1721 2049 5.828299 TTGTACAAACTGGGAAGACTTTG 57.172 39.130 5.64 0.00 0.00 2.77
1722 2050 3.630312 TGTACAAACTGGGAAGACTTTGC 59.370 43.478 0.00 0.00 0.00 3.68
1723 2051 2.031870 ACAAACTGGGAAGACTTTGCC 58.968 47.619 0.00 0.00 44.48 4.52
1724 2052 1.341209 CAAACTGGGAAGACTTTGCCC 59.659 52.381 5.21 5.21 43.66 5.36
1728 2056 0.776810 TGGGAAGACTTTGCCCATCA 59.223 50.000 10.03 0.00 46.57 3.07
1729 2057 1.146774 TGGGAAGACTTTGCCCATCAA 59.853 47.619 10.03 0.00 46.57 2.57
1732 2060 3.261643 GGGAAGACTTTGCCCATCAATTT 59.738 43.478 7.03 0.00 41.64 1.82
1733 2061 4.248058 GGAAGACTTTGCCCATCAATTTG 58.752 43.478 0.00 0.00 34.12 2.32
1734 2062 4.021192 GGAAGACTTTGCCCATCAATTTGA 60.021 41.667 0.75 0.75 34.12 2.69
1735 2063 4.796038 AGACTTTGCCCATCAATTTGAG 57.204 40.909 5.21 0.00 34.12 3.02
1739 2074 1.187974 TGCCCATCAATTTGAGCTGG 58.812 50.000 10.79 10.79 0.00 4.85
1741 2076 1.117150 CCCATCAATTTGAGCTGGGG 58.883 55.000 22.68 17.07 41.07 4.96
1763 2098 4.700213 GGCTGAGTATTCCTTGTGCTAAAA 59.300 41.667 0.00 0.00 0.00 1.52
1775 2110 8.984891 TCCTTGTGCTAAAATCATTTGTAATG 57.015 30.769 0.00 0.00 0.00 1.90
1847 2182 6.163135 ACTTACTGTGAGATGGTTATAGCC 57.837 41.667 6.59 0.00 0.00 3.93
1848 2183 5.661312 ACTTACTGTGAGATGGTTATAGCCA 59.339 40.000 11.07 11.07 43.48 4.75
1858 2193 4.835284 TGGTTATAGCCATGTCTTCACA 57.165 40.909 3.85 0.00 36.78 3.58
1859 2194 5.172687 TGGTTATAGCCATGTCTTCACAA 57.827 39.130 3.85 0.00 35.64 3.33
1880 2225 9.430623 TCACAATTTTGAGATAAATGACGAGTA 57.569 29.630 0.00 0.00 0.00 2.59
1916 2261 8.566260 CAAGATGTCAGATTGTCTTCTTTCTTT 58.434 33.333 3.15 0.00 31.46 2.52
1938 2283 4.693283 TGTCATCCTCTATTAACCAAGCG 58.307 43.478 0.00 0.00 0.00 4.68
1954 2299 5.010282 ACCAAGCGAGAACCAATTTCTTAT 58.990 37.500 0.00 0.00 45.24 1.73
2010 2360 4.315993 ACCCCATAAGAACCATACCTGAT 58.684 43.478 0.00 0.00 0.00 2.90
2013 2363 6.012508 ACCCCATAAGAACCATACCTGATATG 60.013 42.308 0.00 0.00 40.52 1.78
2024 2374 5.639506 CCATACCTGATATGTAAAGGAAGCG 59.360 44.000 0.00 0.00 39.36 4.68
2031 2381 7.201732 CCTGATATGTAAAGGAAGCGAAACAAT 60.202 37.037 0.00 0.00 32.43 2.71
2032 2382 7.471721 TGATATGTAAAGGAAGCGAAACAATG 58.528 34.615 0.00 0.00 0.00 2.82
2058 2408 9.383519 GTATATACCATATCACATCCACCTTTG 57.616 37.037 1.02 0.00 0.00 2.77
2060 2410 3.269381 ACCATATCACATCCACCTTTGGT 59.731 43.478 0.00 0.00 44.35 3.67
2061 2411 3.885297 CCATATCACATCCACCTTTGGTC 59.115 47.826 0.00 0.00 44.35 4.02
2113 2464 4.766375 ACTCGAAACAAAAGAAGGTCAGA 58.234 39.130 0.00 0.00 0.00 3.27
2117 2468 6.915349 TCGAAACAAAAGAAGGTCAGAAAAA 58.085 32.000 0.00 0.00 0.00 1.94
2143 2494 6.949352 AACATGACTTCAAGAGTTCAACAT 57.051 33.333 0.00 0.00 39.19 2.71
2144 2495 6.551385 ACATGACTTCAAGAGTTCAACATC 57.449 37.500 0.00 0.00 39.19 3.06
2145 2496 6.294473 ACATGACTTCAAGAGTTCAACATCT 58.706 36.000 0.00 0.00 39.19 2.90
2146 2497 7.445121 ACATGACTTCAAGAGTTCAACATCTA 58.555 34.615 0.00 0.00 39.19 1.98
2147 2498 8.099537 ACATGACTTCAAGAGTTCAACATCTAT 58.900 33.333 0.00 0.00 39.19 1.98
2148 2499 8.602328 CATGACTTCAAGAGTTCAACATCTATC 58.398 37.037 0.00 0.00 39.19 2.08
2149 2500 7.670364 TGACTTCAAGAGTTCAACATCTATCA 58.330 34.615 0.00 0.00 39.19 2.15
2150 2501 7.816513 TGACTTCAAGAGTTCAACATCTATCAG 59.183 37.037 0.00 0.00 39.19 2.90
2151 2502 7.675062 ACTTCAAGAGTTCAACATCTATCAGT 58.325 34.615 0.00 0.00 33.92 3.41
2152 2503 7.601886 ACTTCAAGAGTTCAACATCTATCAGTG 59.398 37.037 0.00 0.00 33.92 3.66
2158 2509 6.393990 AGTTCAACATCTATCAGTGTCTGTC 58.606 40.000 0.00 0.00 32.61 3.51
2162 2513 6.014242 TCAACATCTATCAGTGTCTGTCCTTT 60.014 38.462 0.00 0.00 32.61 3.11
2196 2547 0.737715 CTCTACTCGGCACAACCTGC 60.738 60.000 0.00 0.00 46.31 4.85
2272 2624 9.154847 ACAAAAAGAAAATGAACAAGAAAGGAG 57.845 29.630 0.00 0.00 0.00 3.69
2300 2652 5.600484 AGAGTGGACTGTTCCTCCATAATAG 59.400 44.000 0.00 0.00 43.31 1.73
2316 2668 8.621532 TCCATAATAGCATATTGTTTCTGGAC 57.378 34.615 0.00 0.00 0.00 4.02
2329 2681 1.357137 TCTGGACAGCCATACAACCA 58.643 50.000 0.00 0.00 44.91 3.67
2330 2682 1.278985 TCTGGACAGCCATACAACCAG 59.721 52.381 0.00 0.00 44.91 4.00
2331 2683 1.003580 CTGGACAGCCATACAACCAGT 59.996 52.381 0.00 0.00 44.91 4.00
2332 2684 2.236146 CTGGACAGCCATACAACCAGTA 59.764 50.000 0.00 0.00 44.91 2.74
2334 2686 3.007635 GGACAGCCATACAACCAGTAAC 58.992 50.000 0.00 0.00 36.05 2.50
2347 2700 1.070758 CCAGTAACCTGTGACAGTGCT 59.929 52.381 12.15 0.00 36.95 4.40
2350 2703 2.028930 AGTAACCTGTGACAGTGCTAGC 60.029 50.000 12.15 8.10 0.00 3.42
2682 3279 6.616774 AATTGCTTTGTTGTTTAATGTGGG 57.383 33.333 0.00 0.00 0.00 4.61
2696 3293 9.331282 TGTTTAATGTGGGTTTAAATTTTCCAG 57.669 29.630 0.00 0.00 32.77 3.86
2719 3316 3.782889 AAAAGAACTGGAACACTGTGC 57.217 42.857 7.90 0.00 0.00 4.57
2741 3340 4.618460 GCTTTGCTTAGAACTTAAAGGGCC 60.618 45.833 0.00 0.00 0.00 5.80
2762 3361 4.675510 CCAGCTGTTTTACCAAGCATATG 58.324 43.478 13.81 0.00 0.00 1.78
2764 3363 5.097529 CAGCTGTTTTACCAAGCATATGTG 58.902 41.667 5.25 0.00 0.00 3.21
2781 3380 6.207417 GCATATGTGGTGCTATGGTTTCTTAT 59.793 38.462 4.29 0.00 39.45 1.73
2788 3387 7.335924 GTGGTGCTATGGTTTCTTATTAACTGA 59.664 37.037 0.00 0.00 0.00 3.41
2789 3388 7.885922 TGGTGCTATGGTTTCTTATTAACTGAA 59.114 33.333 0.00 0.00 0.00 3.02
2790 3389 8.182227 GGTGCTATGGTTTCTTATTAACTGAAC 58.818 37.037 0.00 0.00 0.00 3.18
2791 3390 8.947115 GTGCTATGGTTTCTTATTAACTGAACT 58.053 33.333 0.00 0.00 0.00 3.01
2792 3391 8.946085 TGCTATGGTTTCTTATTAACTGAACTG 58.054 33.333 0.00 0.00 0.00 3.16
2793 3392 7.910683 GCTATGGTTTCTTATTAACTGAACTGC 59.089 37.037 0.00 0.00 0.00 4.40
2794 3393 7.759489 ATGGTTTCTTATTAACTGAACTGCA 57.241 32.000 0.00 0.00 0.00 4.41
2861 3467 7.624360 TCAACACATTTGTAATGTATCTCCC 57.376 36.000 4.85 0.00 33.55 4.30
2863 3469 5.123227 ACACATTTGTAATGTATCTCCCGG 58.877 41.667 4.85 0.00 32.60 5.73
2866 3472 5.820947 ACATTTGTAATGTATCTCCCGGTTC 59.179 40.000 0.00 0.00 0.00 3.62
2887 3493 5.667539 TCCACTACCTGAGATCTTGAAAG 57.332 43.478 0.00 0.00 0.00 2.62
2897 3505 6.058553 TGAGATCTTGAAAGATGTGTGGAT 57.941 37.500 10.23 0.00 45.39 3.41
2940 3576 8.299570 GGAGACATTTGAACACAATCAGTTTAT 58.700 33.333 0.00 0.00 0.00 1.40
2941 3577 9.121517 GAGACATTTGAACACAATCAGTTTATG 57.878 33.333 0.00 0.00 0.00 1.90
2943 3579 9.121517 GACATTTGAACACAATCAGTTTATGAG 57.878 33.333 0.00 0.00 42.53 2.90
2953 3589 6.307155 CAATCAGTTTATGAGTGTTCCGAAC 58.693 40.000 4.18 4.18 46.46 3.95
2954 3590 4.312443 TCAGTTTATGAGTGTTCCGAACC 58.688 43.478 8.80 0.79 32.77 3.62
2955 3591 4.062293 CAGTTTATGAGTGTTCCGAACCA 58.938 43.478 8.80 0.37 0.00 3.67
2958 3595 4.819105 TTATGAGTGTTCCGAACCAGAT 57.181 40.909 8.80 0.00 0.00 2.90
2959 3596 5.925506 TTATGAGTGTTCCGAACCAGATA 57.074 39.130 8.80 0.00 0.00 1.98
2962 3600 5.160607 TGAGTGTTCCGAACCAGATAATT 57.839 39.130 8.80 0.00 0.00 1.40
2971 3609 8.979574 GTTCCGAACCAGATAATTTAGATGTAG 58.020 37.037 0.00 0.00 0.00 2.74
2973 3611 9.090103 TCCGAACCAGATAATTTAGATGTAGAT 57.910 33.333 0.00 0.00 0.00 1.98
3018 3656 7.883311 TCTGTACATCAGTAGAATCGATGGATA 59.117 37.037 0.00 0.00 43.97 2.59
3036 3674 3.202151 GGATACATCAGGGTCCTTTGGAA 59.798 47.826 0.00 0.00 31.38 3.53
3047 3685 3.250762 GGTCCTTTGGAAATTTTGCAAGC 59.749 43.478 14.47 7.93 42.01 4.01
3065 3703 1.574702 GCTCTGCACGGTTTACACCC 61.575 60.000 0.00 0.00 40.52 4.61
3074 3713 4.992951 GCACGGTTTACACCCTATAATAGG 59.007 45.833 0.00 0.00 45.81 2.57
3086 3725 6.876257 CACCCTATAATAGGCTTGATTGAGTC 59.124 42.308 0.00 0.00 44.86 3.36
3088 3727 6.102663 CCTATAATAGGCTTGATTGAGTCCG 58.897 44.000 0.00 0.00 39.48 4.79
3089 3728 2.246719 ATAGGCTTGATTGAGTCCGC 57.753 50.000 0.00 0.00 0.00 5.54
3122 3762 1.374758 CCTGTTCGAGGCTGGTGTC 60.375 63.158 0.00 0.00 34.01 3.67
3128 3768 0.968901 TCGAGGCTGGTGTCGGTTAT 60.969 55.000 0.00 0.00 36.81 1.89
3129 3769 0.742505 CGAGGCTGGTGTCGGTTATA 59.257 55.000 0.00 0.00 32.40 0.98
3130 3770 1.269102 CGAGGCTGGTGTCGGTTATAG 60.269 57.143 0.00 0.00 32.40 1.31
3131 3771 0.464452 AGGCTGGTGTCGGTTATAGC 59.536 55.000 0.00 0.00 0.00 2.97
3132 3772 0.464452 GGCTGGTGTCGGTTATAGCT 59.536 55.000 0.00 0.00 0.00 3.32
3133 3773 1.684983 GGCTGGTGTCGGTTATAGCTA 59.315 52.381 0.00 0.00 0.00 3.32
3144 3784 3.884091 CGGTTATAGCTAGTCACCTCTGT 59.116 47.826 14.00 0.00 0.00 3.41
3145 3785 4.338682 CGGTTATAGCTAGTCACCTCTGTT 59.661 45.833 14.00 0.00 0.00 3.16
3146 3786 5.163540 CGGTTATAGCTAGTCACCTCTGTTT 60.164 44.000 14.00 0.00 0.00 2.83
3159 3799 3.646637 ACCTCTGTTTGTTAGCTACCTGT 59.353 43.478 0.00 0.00 0.00 4.00
3160 3800 4.836736 ACCTCTGTTTGTTAGCTACCTGTA 59.163 41.667 0.00 0.00 0.00 2.74
3169 3809 4.527038 TGTTAGCTACCTGTACTGAAGCTT 59.473 41.667 24.14 0.00 40.52 3.74
3188 3828 2.877097 TGCTTTCCTATCTGTTGCCA 57.123 45.000 0.00 0.00 0.00 4.92
3189 3829 2.715046 TGCTTTCCTATCTGTTGCCAG 58.285 47.619 0.00 0.00 40.25 4.85
3190 3830 2.040278 TGCTTTCCTATCTGTTGCCAGT 59.960 45.455 0.00 0.00 39.82 4.00
3191 3831 2.421424 GCTTTCCTATCTGTTGCCAGTG 59.579 50.000 0.00 0.00 39.82 3.66
3192 3832 2.113860 TTCCTATCTGTTGCCAGTGC 57.886 50.000 0.00 0.00 39.82 4.40
3193 3833 0.108186 TCCTATCTGTTGCCAGTGCG 60.108 55.000 0.00 0.00 41.78 5.34
3194 3834 0.391661 CCTATCTGTTGCCAGTGCGT 60.392 55.000 0.00 0.00 41.78 5.24
3195 3835 1.002366 CTATCTGTTGCCAGTGCGTC 58.998 55.000 0.00 0.00 41.78 5.19
3206 3846 2.348666 GCCAGTGCGTCAGTTGTAATAG 59.651 50.000 0.00 0.00 0.00 1.73
3213 3853 3.487574 GCGTCAGTTGTAATAGCTAGCTG 59.512 47.826 27.68 7.98 0.00 4.24
3216 3856 5.411781 GTCAGTTGTAATAGCTAGCTGTGT 58.588 41.667 27.68 13.94 0.00 3.72
3218 3858 7.033791 GTCAGTTGTAATAGCTAGCTGTGTTA 58.966 38.462 27.68 18.53 0.00 2.41
3222 3862 8.407064 AGTTGTAATAGCTAGCTGTGTTACTAG 58.593 37.037 29.31 0.00 39.13 2.57
3231 3871 7.171678 AGCTAGCTGTGTTACTAGTTTCTTTTG 59.828 37.037 18.57 0.00 38.50 2.44
3232 3872 7.041984 GCTAGCTGTGTTACTAGTTTCTTTTGT 60.042 37.037 7.70 0.00 38.50 2.83
3236 3876 8.583765 GCTGTGTTACTAGTTTCTTTTGTTTTG 58.416 33.333 0.00 0.00 0.00 2.44
3237 3877 9.620660 CTGTGTTACTAGTTTCTTTTGTTTTGT 57.379 29.630 0.00 0.00 0.00 2.83
3238 3878 9.400638 TGTGTTACTAGTTTCTTTTGTTTTGTG 57.599 29.630 0.00 0.00 0.00 3.33
3239 3879 8.370321 GTGTTACTAGTTTCTTTTGTTTTGTGC 58.630 33.333 0.00 0.00 0.00 4.57
3247 3888 3.551082 TCTTTTGTTTTGTGCGCTTCATG 59.449 39.130 9.73 0.00 0.00 3.07
3257 3898 2.736721 GTGCGCTTCATGTCTAAACTGA 59.263 45.455 9.73 0.00 0.00 3.41
3262 3903 5.718246 CGCTTCATGTCTAAACTGATAACG 58.282 41.667 0.00 0.00 0.00 3.18
3263 3904 5.493735 GCTTCATGTCTAAACTGATAACGC 58.506 41.667 0.00 0.00 0.00 4.84
3269 3910 3.062234 GTCTAAACTGATAACGCCAGCAC 59.938 47.826 0.00 0.00 35.14 4.40
3294 3935 1.043022 CCTTCTTTGCAAAGCTGGGT 58.957 50.000 30.35 0.00 35.99 4.51
3295 3936 1.269936 CCTTCTTTGCAAAGCTGGGTG 60.270 52.381 30.35 16.43 35.99 4.61
3296 3937 1.682854 CTTCTTTGCAAAGCTGGGTGA 59.317 47.619 30.35 12.03 35.99 4.02
3297 3938 1.321474 TCTTTGCAAAGCTGGGTGAG 58.679 50.000 30.35 8.38 35.99 3.51
3298 3939 1.133823 TCTTTGCAAAGCTGGGTGAGA 60.134 47.619 30.35 10.63 35.99 3.27
3299 3940 1.268899 CTTTGCAAAGCTGGGTGAGAG 59.731 52.381 25.26 0.00 0.00 3.20
3301 3942 2.338785 GCAAAGCTGGGTGAGAGGC 61.339 63.158 0.00 0.00 0.00 4.70
3303 3944 1.849823 AAAGCTGGGTGAGAGGCCT 60.850 57.895 3.86 3.86 0.00 5.19
3305 3946 1.430369 AAGCTGGGTGAGAGGCCTTT 61.430 55.000 6.77 0.00 0.00 3.11
3306 3947 1.075659 GCTGGGTGAGAGGCCTTTT 59.924 57.895 6.77 0.00 0.00 2.27
3307 3948 0.962855 GCTGGGTGAGAGGCCTTTTC 60.963 60.000 6.77 9.15 0.00 2.29
3308 3949 0.322906 CTGGGTGAGAGGCCTTTTCC 60.323 60.000 6.77 8.33 0.00 3.13
3309 3950 0.772124 TGGGTGAGAGGCCTTTTCCT 60.772 55.000 6.77 0.00 39.67 3.36
3310 3951 0.405973 GGGTGAGAGGCCTTTTCCTT 59.594 55.000 6.77 0.00 36.38 3.36
3311 3952 1.203063 GGGTGAGAGGCCTTTTCCTTT 60.203 52.381 6.77 0.00 36.38 3.11
3312 3953 2.598565 GGTGAGAGGCCTTTTCCTTTT 58.401 47.619 6.77 0.00 36.38 2.27
3313 3954 3.499745 GGGTGAGAGGCCTTTTCCTTTTA 60.500 47.826 6.77 0.00 36.38 1.52
3314 3955 3.506455 GGTGAGAGGCCTTTTCCTTTTAC 59.494 47.826 6.77 2.09 36.38 2.01
3315 3956 4.399219 GTGAGAGGCCTTTTCCTTTTACT 58.601 43.478 6.77 0.00 36.38 2.24
3316 3957 4.827835 GTGAGAGGCCTTTTCCTTTTACTT 59.172 41.667 6.77 0.00 36.38 2.24
3317 3958 5.302059 GTGAGAGGCCTTTTCCTTTTACTTT 59.698 40.000 6.77 0.00 36.38 2.66
3318 3959 5.535030 TGAGAGGCCTTTTCCTTTTACTTTC 59.465 40.000 6.77 0.00 36.38 2.62
3319 3960 5.706447 AGAGGCCTTTTCCTTTTACTTTCT 58.294 37.500 6.77 0.00 36.38 2.52
3320 3961 6.849151 AGAGGCCTTTTCCTTTTACTTTCTA 58.151 36.000 6.77 0.00 36.38 2.10
3321 3962 7.471041 AGAGGCCTTTTCCTTTTACTTTCTAT 58.529 34.615 6.77 0.00 36.38 1.98
3322 3963 7.950684 AGAGGCCTTTTCCTTTTACTTTCTATT 59.049 33.333 6.77 0.00 36.38 1.73
3323 3964 9.239551 GAGGCCTTTTCCTTTTACTTTCTATTA 57.760 33.333 6.77 0.00 36.38 0.98
3324 3965 9.769677 AGGCCTTTTCCTTTTACTTTCTATTAT 57.230 29.630 0.00 0.00 30.82 1.28
3379 4020 6.368791 TCTGTCTGTTTTCTGAATTATCCGTG 59.631 38.462 0.00 0.00 0.00 4.94
3380 4021 6.227522 TGTCTGTTTTCTGAATTATCCGTGA 58.772 36.000 0.00 0.00 0.00 4.35
3383 4024 8.237267 GTCTGTTTTCTGAATTATCCGTGAAAT 58.763 33.333 0.00 0.00 0.00 2.17
3412 4053 9.787435 AAAATACCCCAAAAATAAAAGTTCTCC 57.213 29.630 0.00 0.00 0.00 3.71
3413 4054 8.499288 AATACCCCAAAAATAAAAGTTCTCCA 57.501 30.769 0.00 0.00 0.00 3.86
3414 4055 6.816616 ACCCCAAAAATAAAAGTTCTCCAA 57.183 33.333 0.00 0.00 0.00 3.53
3415 4056 7.201702 ACCCCAAAAATAAAAGTTCTCCAAA 57.798 32.000 0.00 0.00 0.00 3.28
3416 4057 7.811282 ACCCCAAAAATAAAAGTTCTCCAAAT 58.189 30.769 0.00 0.00 0.00 2.32
3417 4058 7.719193 ACCCCAAAAATAAAAGTTCTCCAAATG 59.281 33.333 0.00 0.00 0.00 2.32
3418 4059 7.308529 CCCCAAAAATAAAAGTTCTCCAAATGC 60.309 37.037 0.00 0.00 0.00 3.56
3419 4060 7.308529 CCCAAAAATAAAAGTTCTCCAAATGCC 60.309 37.037 0.00 0.00 0.00 4.40
3420 4061 7.308529 CCAAAAATAAAAGTTCTCCAAATGCCC 60.309 37.037 0.00 0.00 0.00 5.36
3421 4062 6.686484 AAATAAAAGTTCTCCAAATGCCCT 57.314 33.333 0.00 0.00 0.00 5.19
3422 4063 5.665916 ATAAAAGTTCTCCAAATGCCCTG 57.334 39.130 0.00 0.00 0.00 4.45
3423 4064 2.978156 AAGTTCTCCAAATGCCCTGA 57.022 45.000 0.00 0.00 0.00 3.86
3424 4065 2.978156 AGTTCTCCAAATGCCCTGAA 57.022 45.000 0.00 0.00 0.00 3.02
3425 4066 3.243359 AGTTCTCCAAATGCCCTGAAA 57.757 42.857 0.00 0.00 0.00 2.69
3426 4067 3.575805 AGTTCTCCAAATGCCCTGAAAA 58.424 40.909 0.00 0.00 0.00 2.29
3427 4068 4.162651 AGTTCTCCAAATGCCCTGAAAAT 58.837 39.130 0.00 0.00 0.00 1.82
3428 4069 4.020839 AGTTCTCCAAATGCCCTGAAAATG 60.021 41.667 0.00 0.00 0.00 2.32
3429 4070 2.833338 TCTCCAAATGCCCTGAAAATGG 59.167 45.455 0.00 0.00 0.00 3.16
3430 4071 2.833338 CTCCAAATGCCCTGAAAATGGA 59.167 45.455 0.00 0.00 34.52 3.41
3431 4072 2.833338 TCCAAATGCCCTGAAAATGGAG 59.167 45.455 0.00 0.00 32.10 3.86
3432 4073 2.568509 CCAAATGCCCTGAAAATGGAGT 59.431 45.455 0.00 0.00 0.00 3.85
3433 4074 3.768757 CCAAATGCCCTGAAAATGGAGTA 59.231 43.478 0.00 0.00 0.00 2.59
3434 4075 4.406649 CCAAATGCCCTGAAAATGGAGTAT 59.593 41.667 0.00 0.00 0.00 2.12
3435 4076 5.353938 CAAATGCCCTGAAAATGGAGTATG 58.646 41.667 0.00 0.00 0.00 2.39
3436 4077 4.524802 ATGCCCTGAAAATGGAGTATGA 57.475 40.909 0.00 0.00 0.00 2.15
3437 4078 4.524802 TGCCCTGAAAATGGAGTATGAT 57.475 40.909 0.00 0.00 0.00 2.45
3438 4079 4.870636 TGCCCTGAAAATGGAGTATGATT 58.129 39.130 0.00 0.00 0.00 2.57
3439 4080 5.271598 TGCCCTGAAAATGGAGTATGATTT 58.728 37.500 0.00 0.00 0.00 2.17
3440 4081 5.721000 TGCCCTGAAAATGGAGTATGATTTT 59.279 36.000 0.00 0.00 35.06 1.82
3441 4082 6.213195 TGCCCTGAAAATGGAGTATGATTTTT 59.787 34.615 0.00 0.00 33.03 1.94
3477 4118 8.865590 TTAAGAATTTCTGGCACTTAAAACAC 57.134 30.769 0.00 0.00 32.57 3.32
3478 4119 6.463995 AGAATTTCTGGCACTTAAAACACA 57.536 33.333 0.00 0.00 0.00 3.72
3479 4120 6.273071 AGAATTTCTGGCACTTAAAACACAC 58.727 36.000 0.00 0.00 0.00 3.82
3480 4121 4.379339 TTTCTGGCACTTAAAACACACC 57.621 40.909 0.00 0.00 0.00 4.16
3481 4122 3.006112 TCTGGCACTTAAAACACACCA 57.994 42.857 0.00 0.00 0.00 4.17
3482 4123 3.357203 TCTGGCACTTAAAACACACCAA 58.643 40.909 0.00 0.00 0.00 3.67
3483 4124 3.380004 TCTGGCACTTAAAACACACCAAG 59.620 43.478 0.00 0.00 0.00 3.61
3484 4125 2.428890 TGGCACTTAAAACACACCAAGG 59.571 45.455 0.00 0.00 0.00 3.61
3485 4126 2.223947 GGCACTTAAAACACACCAAGGG 60.224 50.000 0.00 0.00 0.00 3.95
3486 4127 2.223947 GCACTTAAAACACACCAAGGGG 60.224 50.000 0.00 0.00 41.29 4.79
3487 4128 3.292460 CACTTAAAACACACCAAGGGGA 58.708 45.455 0.00 0.00 38.05 4.81
3488 4129 3.067601 CACTTAAAACACACCAAGGGGAC 59.932 47.826 0.00 0.00 38.05 4.46
3502 4143 3.681909 GGGACCCACCATTTAGCAA 57.318 52.632 5.33 0.00 41.20 3.91
3503 4144 1.931635 GGGACCCACCATTTAGCAAA 58.068 50.000 5.33 0.00 41.20 3.68
3504 4145 2.466846 GGGACCCACCATTTAGCAAAT 58.533 47.619 5.33 0.00 41.20 2.32
3505 4146 3.637769 GGGACCCACCATTTAGCAAATA 58.362 45.455 5.33 0.00 41.20 1.40
3506 4147 3.383505 GGGACCCACCATTTAGCAAATAC 59.616 47.826 5.33 0.00 41.20 1.89
3507 4148 4.020543 GGACCCACCATTTAGCAAATACA 58.979 43.478 0.00 0.00 38.79 2.29
3508 4149 4.097892 GGACCCACCATTTAGCAAATACAG 59.902 45.833 0.00 0.00 38.79 2.74
3509 4150 4.929479 ACCCACCATTTAGCAAATACAGA 58.071 39.130 0.00 0.00 0.00 3.41
3510 4151 5.518865 ACCCACCATTTAGCAAATACAGAT 58.481 37.500 0.00 0.00 0.00 2.90
3511 4152 6.668645 ACCCACCATTTAGCAAATACAGATA 58.331 36.000 0.00 0.00 0.00 1.98
3512 4153 7.122715 ACCCACCATTTAGCAAATACAGATAA 58.877 34.615 0.00 0.00 0.00 1.75
3513 4154 7.617723 ACCCACCATTTAGCAAATACAGATAAA 59.382 33.333 0.00 0.00 32.26 1.40
3514 4155 7.920682 CCCACCATTTAGCAAATACAGATAAAC 59.079 37.037 0.00 0.00 30.72 2.01
3515 4156 8.465999 CCACCATTTAGCAAATACAGATAAACA 58.534 33.333 0.00 0.00 30.72 2.83
3516 4157 9.853555 CACCATTTAGCAAATACAGATAAACAA 57.146 29.630 0.00 0.00 30.72 2.83
3518 4159 9.520204 CCATTTAGCAAATACAGATAAACAAGG 57.480 33.333 0.00 0.00 30.72 3.61
3519 4160 9.023967 CATTTAGCAAATACAGATAAACAAGGC 57.976 33.333 0.00 0.00 30.72 4.35
3520 4161 7.695480 TTAGCAAATACAGATAAACAAGGCA 57.305 32.000 0.00 0.00 0.00 4.75
3521 4162 6.780457 AGCAAATACAGATAAACAAGGCAT 57.220 33.333 0.00 0.00 0.00 4.40
3522 4163 6.799512 AGCAAATACAGATAAACAAGGCATC 58.200 36.000 0.00 0.00 0.00 3.91
3523 4164 6.604795 AGCAAATACAGATAAACAAGGCATCT 59.395 34.615 0.00 0.00 0.00 2.90
3525 4166 6.382869 AATACAGATAAACAAGGCATCTGC 57.617 37.500 10.01 0.00 46.27 4.26
3526 4167 3.960571 ACAGATAAACAAGGCATCTGCT 58.039 40.909 10.01 0.00 46.27 4.24
3527 4168 4.338879 ACAGATAAACAAGGCATCTGCTT 58.661 39.130 10.01 0.00 46.27 3.91
3528 4169 4.157289 ACAGATAAACAAGGCATCTGCTTG 59.843 41.667 10.01 7.32 46.27 4.01
3529 4170 4.397103 CAGATAAACAAGGCATCTGCTTGA 59.603 41.667 16.09 0.00 39.29 3.02
3530 4171 5.012239 AGATAAACAAGGCATCTGCTTGAA 58.988 37.500 16.09 6.43 41.70 2.69
3531 4172 5.477984 AGATAAACAAGGCATCTGCTTGAAA 59.522 36.000 16.09 6.20 41.70 2.69
3532 4173 4.405116 AAACAAGGCATCTGCTTGAAAA 57.595 36.364 16.09 0.00 41.70 2.29
3533 4174 3.375782 ACAAGGCATCTGCTTGAAAAC 57.624 42.857 16.09 0.00 41.70 2.43
3534 4175 2.961062 ACAAGGCATCTGCTTGAAAACT 59.039 40.909 16.09 0.00 41.70 2.66
3535 4176 3.243636 ACAAGGCATCTGCTTGAAAACTG 60.244 43.478 16.09 2.07 41.70 3.16
3536 4177 1.891150 AGGCATCTGCTTGAAAACTGG 59.109 47.619 1.70 0.00 41.70 4.00
3537 4178 1.888512 GGCATCTGCTTGAAAACTGGA 59.111 47.619 1.70 0.00 41.70 3.86
3538 4179 2.352127 GGCATCTGCTTGAAAACTGGAC 60.352 50.000 1.70 0.00 41.70 4.02
3539 4180 2.294233 GCATCTGCTTGAAAACTGGACA 59.706 45.455 0.00 0.00 38.21 4.02
3540 4181 3.243501 GCATCTGCTTGAAAACTGGACAA 60.244 43.478 0.00 0.00 38.21 3.18
3541 4182 4.737352 GCATCTGCTTGAAAACTGGACAAA 60.737 41.667 0.00 0.00 38.21 2.83
3542 4183 5.535333 CATCTGCTTGAAAACTGGACAAAT 58.465 37.500 0.00 0.00 0.00 2.32
3543 4184 4.935702 TCTGCTTGAAAACTGGACAAATG 58.064 39.130 0.00 0.00 0.00 2.32
3544 4185 3.456280 TGCTTGAAAACTGGACAAATGC 58.544 40.909 0.00 0.00 0.00 3.56
3545 4186 3.132646 TGCTTGAAAACTGGACAAATGCT 59.867 39.130 0.00 0.00 0.00 3.79
3546 4187 4.340666 TGCTTGAAAACTGGACAAATGCTA 59.659 37.500 0.00 0.00 0.00 3.49
3547 4188 5.163468 TGCTTGAAAACTGGACAAATGCTAA 60.163 36.000 0.00 0.00 0.00 3.09
3548 4189 5.752955 GCTTGAAAACTGGACAAATGCTAAA 59.247 36.000 0.00 0.00 0.00 1.85
3549 4190 6.292328 GCTTGAAAACTGGACAAATGCTAAAC 60.292 38.462 0.00 0.00 0.00 2.01
3562 4203 6.315891 ACAAATGCTAAACTTGTTGCATGTTT 59.684 30.769 14.45 14.45 44.15 2.83
3591 4232 5.767816 ACTATTTTGTGGGAACTGTTGTC 57.232 39.130 0.00 0.00 0.00 3.18
3595 4236 3.485463 TTGTGGGAACTGTTGTCTAGG 57.515 47.619 0.00 0.00 0.00 3.02
3596 4237 2.404559 TGTGGGAACTGTTGTCTAGGT 58.595 47.619 0.00 0.00 0.00 3.08
3597 4238 2.104111 TGTGGGAACTGTTGTCTAGGTG 59.896 50.000 0.00 0.00 0.00 4.00
3601 4242 4.104102 TGGGAACTGTTGTCTAGGTGATTT 59.896 41.667 0.00 0.00 0.00 2.17
3602 4243 5.070685 GGGAACTGTTGTCTAGGTGATTTT 58.929 41.667 0.00 0.00 0.00 1.82
3603 4244 5.535030 GGGAACTGTTGTCTAGGTGATTTTT 59.465 40.000 0.00 0.00 0.00 1.94
3604 4245 6.438763 GGAACTGTTGTCTAGGTGATTTTTG 58.561 40.000 0.00 0.00 0.00 2.44
3605 4246 6.039382 GGAACTGTTGTCTAGGTGATTTTTGT 59.961 38.462 0.00 0.00 0.00 2.83
3622 4272 8.559536 TGATTTTTGTATCTCAAGTTGACAGTC 58.440 33.333 0.08 0.00 37.35 3.51
3624 4274 7.715265 TTTTGTATCTCAAGTTGACAGTCTC 57.285 36.000 0.08 0.00 37.35 3.36
3636 4286 5.070981 AGTTGACAGTCTCATACCATATGGG 59.929 44.000 25.55 8.37 44.81 4.00
3648 4298 8.292444 TCATACCATATGGGAAAACTGAAAAG 57.708 34.615 25.55 0.00 41.15 2.27
3649 4299 7.893302 TCATACCATATGGGAAAACTGAAAAGT 59.107 33.333 25.55 1.99 41.15 2.66
3650 4300 6.345096 ACCATATGGGAAAACTGAAAAGTG 57.655 37.500 25.55 0.00 41.15 3.16
3651 4301 6.074648 ACCATATGGGAAAACTGAAAAGTGA 58.925 36.000 25.55 0.00 41.15 3.41
3652 4302 6.553100 ACCATATGGGAAAACTGAAAAGTGAA 59.447 34.615 25.55 0.00 41.15 3.18
3653 4303 7.070571 ACCATATGGGAAAACTGAAAAGTGAAA 59.929 33.333 25.55 0.00 41.15 2.69
3655 4305 8.764287 CATATGGGAAAACTGAAAAGTGAAAAC 58.236 33.333 0.00 0.00 0.00 2.43
3656 4306 5.483811 TGGGAAAACTGAAAAGTGAAAACC 58.516 37.500 0.00 0.00 0.00 3.27
3658 4308 6.170506 GGGAAAACTGAAAAGTGAAAACCTT 58.829 36.000 0.00 0.00 0.00 3.50
3666 4316 6.374588 TGAAAAGTGAAAACCTTATGGGGTA 58.625 36.000 0.00 0.00 38.87 3.69
3685 4335 7.878495 TGGGGTATGTTAGTGGAAAAAGATAT 58.122 34.615 0.00 0.00 0.00 1.63
3686 4336 8.340757 TGGGGTATGTTAGTGGAAAAAGATATT 58.659 33.333 0.00 0.00 0.00 1.28
3717 4367 8.632679 TCATTTTACCTTATTTCTGATGATGGC 58.367 33.333 0.00 0.00 0.00 4.40
3718 4368 7.953005 TTTTACCTTATTTCTGATGATGGCA 57.047 32.000 0.00 0.00 0.00 4.92
3721 4371 8.537728 TTACCTTATTTCTGATGATGGCATTT 57.462 30.769 0.00 0.00 34.11 2.32
3723 4373 7.945134 ACCTTATTTCTGATGATGGCATTTAC 58.055 34.615 0.00 0.00 34.11 2.01
3724 4374 7.014615 ACCTTATTTCTGATGATGGCATTTACC 59.985 37.037 0.00 0.00 34.11 2.85
3746 4410 9.747898 TTACCTATGAAAATATCCAAACACTGT 57.252 29.630 0.00 0.00 0.00 3.55
3747 4411 8.055279 ACCTATGAAAATATCCAAACACTGTG 57.945 34.615 6.19 6.19 0.00 3.66
3748 4412 6.974622 CCTATGAAAATATCCAAACACTGTGC 59.025 38.462 7.90 0.00 0.00 4.57
3749 4413 5.132897 TGAAAATATCCAAACACTGTGCC 57.867 39.130 7.90 0.00 0.00 5.01
3750 4414 3.848272 AAATATCCAAACACTGTGCCG 57.152 42.857 7.90 0.00 0.00 5.69
3751 4415 2.489938 ATATCCAAACACTGTGCCGT 57.510 45.000 7.90 0.00 0.00 5.68
3752 4416 3.620427 ATATCCAAACACTGTGCCGTA 57.380 42.857 7.90 0.00 0.00 4.02
3753 4417 1.808411 ATCCAAACACTGTGCCGTAG 58.192 50.000 7.90 0.00 0.00 3.51
3754 4418 0.753867 TCCAAACACTGTGCCGTAGA 59.246 50.000 7.90 0.00 0.00 2.59
3755 4419 1.346395 TCCAAACACTGTGCCGTAGAT 59.654 47.619 7.90 0.00 0.00 1.98
3756 4420 2.151202 CCAAACACTGTGCCGTAGATT 58.849 47.619 7.90 0.00 0.00 2.40
3757 4421 2.552315 CCAAACACTGTGCCGTAGATTT 59.448 45.455 7.90 0.00 0.00 2.17
3758 4422 3.749088 CCAAACACTGTGCCGTAGATTTA 59.251 43.478 7.90 0.00 0.00 1.40
3759 4423 4.394920 CCAAACACTGTGCCGTAGATTTAT 59.605 41.667 7.90 0.00 0.00 1.40
3760 4424 5.447279 CCAAACACTGTGCCGTAGATTTATC 60.447 44.000 7.90 0.00 0.00 1.75
3761 4425 4.465632 ACACTGTGCCGTAGATTTATCA 57.534 40.909 7.90 0.00 0.00 2.15
3762 4426 5.023533 ACACTGTGCCGTAGATTTATCAT 57.976 39.130 7.90 0.00 0.00 2.45
3763 4427 4.811024 ACACTGTGCCGTAGATTTATCATG 59.189 41.667 7.90 0.00 0.00 3.07
3764 4428 5.049828 CACTGTGCCGTAGATTTATCATGA 58.950 41.667 0.00 0.00 0.00 3.07
3765 4429 5.050490 ACTGTGCCGTAGATTTATCATGAC 58.950 41.667 0.00 0.00 0.00 3.06
3770 4446 4.631813 GCCGTAGATTTATCATGACATCCC 59.368 45.833 0.00 0.00 0.00 3.85
3771 4447 5.178797 CCGTAGATTTATCATGACATCCCC 58.821 45.833 0.00 0.00 0.00 4.81
3802 4478 5.194432 TGTTAGGTTTGCTTAGTGGACAAA 58.806 37.500 0.00 0.00 0.00 2.83
3806 4482 4.649218 AGGTTTGCTTAGTGGACAAATGTT 59.351 37.500 0.00 0.00 35.87 2.71
3807 4483 4.744631 GGTTTGCTTAGTGGACAAATGTTG 59.255 41.667 0.00 0.00 35.87 3.33
3809 4485 5.590530 TTGCTTAGTGGACAAATGTTGTT 57.409 34.783 0.00 0.00 45.52 2.83
3810 4486 4.930963 TGCTTAGTGGACAAATGTTGTTG 58.069 39.130 0.00 0.00 45.52 3.33
3814 4490 0.387202 TGGACAAATGTTGTTGGCGG 59.613 50.000 0.00 0.00 45.52 6.13
3819 4495 1.067283 CAAATGTTGTTGGCGGCCATA 60.067 47.619 24.49 12.55 31.53 2.74
3821 4497 2.356665 ATGTTGTTGGCGGCCATATA 57.643 45.000 24.49 4.91 31.53 0.86
3823 4499 2.226330 TGTTGTTGGCGGCCATATATC 58.774 47.619 24.49 12.78 31.53 1.63
3825 4501 2.183478 TGTTGGCGGCCATATATCAG 57.817 50.000 24.49 0.00 31.53 2.90
3828 4504 3.263170 TGTTGGCGGCCATATATCAGTAT 59.737 43.478 24.49 0.00 31.53 2.12
3833 4509 5.186198 GGCGGCCATATATCAGTATTTTCT 58.814 41.667 15.62 0.00 0.00 2.52
3836 4512 7.499232 GGCGGCCATATATCAGTATTTTCTTAT 59.501 37.037 15.62 0.00 0.00 1.73
3837 4513 9.542462 GCGGCCATATATCAGTATTTTCTTATA 57.458 33.333 2.24 0.00 0.00 0.98
3875 4551 6.064060 ACTGTTAGTGGCATGTGCATTATAT 58.936 36.000 7.36 0.00 44.36 0.86
3876 4552 7.223584 ACTGTTAGTGGCATGTGCATTATATA 58.776 34.615 7.36 0.00 44.36 0.86
3877 4553 7.388776 ACTGTTAGTGGCATGTGCATTATATAG 59.611 37.037 7.36 0.81 44.36 1.31
3878 4554 7.223584 TGTTAGTGGCATGTGCATTATATAGT 58.776 34.615 7.36 0.00 44.36 2.12
3879 4555 7.719193 TGTTAGTGGCATGTGCATTATATAGTT 59.281 33.333 7.36 0.00 44.36 2.24
3886 4562 9.612620 GGCATGTGCATTATATAGTTAAAGTTC 57.387 33.333 7.36 0.00 44.36 3.01
3906 4583 1.140652 CAAAGTGGGGCACAAAACCAT 59.859 47.619 0.00 0.00 36.74 3.55
3911 4588 1.689273 TGGGGCACAAAACCATGTAAC 59.311 47.619 0.00 0.00 30.84 2.50
3920 4597 4.827284 ACAAAACCATGTAACTAGCTGCTT 59.173 37.500 7.79 0.00 0.00 3.91
3923 4600 3.866651 ACCATGTAACTAGCTGCTTCTG 58.133 45.455 7.79 1.27 0.00 3.02
3925 4602 3.868077 CCATGTAACTAGCTGCTTCTGTC 59.132 47.826 7.79 0.00 0.00 3.51
3938 4615 1.142870 CTTCTGTCAACCCCACCAAGA 59.857 52.381 0.00 0.00 0.00 3.02
3939 4616 1.444933 TCTGTCAACCCCACCAAGAT 58.555 50.000 0.00 0.00 0.00 2.40
3944 4621 4.746466 TGTCAACCCCACCAAGATAAATT 58.254 39.130 0.00 0.00 0.00 1.82
3953 4630 7.124147 ACCCCACCAAGATAAATTGACTAATTG 59.876 37.037 0.00 0.00 36.65 2.32
3954 4631 7.124147 CCCCACCAAGATAAATTGACTAATTGT 59.876 37.037 0.00 0.00 36.65 2.71
3980 4657 8.773404 TTTAAACTGTTCTGAGGATAACTAGC 57.227 34.615 0.00 0.00 0.00 3.42
3987 4664 6.599244 TGTTCTGAGGATAACTAGCATTTTGG 59.401 38.462 0.00 0.00 0.00 3.28
3992 4669 7.601856 TGAGGATAACTAGCATTTTGGTTTTG 58.398 34.615 0.00 0.00 0.00 2.44
3995 4672 6.873605 GGATAACTAGCATTTTGGTTTTGCTT 59.126 34.615 1.62 0.00 43.94 3.91
3996 4673 5.989551 AACTAGCATTTTGGTTTTGCTTG 57.010 34.783 1.62 3.23 43.94 4.01
3997 4674 3.809279 ACTAGCATTTTGGTTTTGCTTGC 59.191 39.130 1.62 0.00 43.94 4.01
3998 4675 2.641305 AGCATTTTGGTTTTGCTTGCA 58.359 38.095 0.00 0.00 43.94 4.08
4026 4703 5.121105 ACTGTGTACCTGTAACTGAAAACC 58.879 41.667 0.00 0.00 0.00 3.27
4162 4839 2.027929 CCCGGTTGTGTTATGGTACTGA 60.028 50.000 0.00 0.00 0.00 3.41
4429 5114 4.196626 TGACCGTCCATAACTAGTTTGG 57.803 45.455 14.49 19.01 0.00 3.28
4470 5159 2.037641 GGTGGCTGCTCTTTCCATTTTT 59.962 45.455 0.00 0.00 31.83 1.94
4471 5160 3.062042 GTGGCTGCTCTTTCCATTTTTG 58.938 45.455 0.00 0.00 31.83 2.44
4489 5178 1.826921 GTGGATGCAGCATGAGGGG 60.827 63.158 14.22 0.00 39.69 4.79
4497 5186 1.680207 GCAGCATGAGGGGAAATCTTC 59.320 52.381 0.00 0.00 39.69 2.87
4620 5309 7.707624 TTTGGCATCTACAGATTCTTTCATT 57.292 32.000 0.00 0.00 31.21 2.57
4621 5310 7.707624 TTGGCATCTACAGATTCTTTCATTT 57.292 32.000 0.00 0.00 31.21 2.32
4624 5313 6.971184 GGCATCTACAGATTCTTTCATTTGTG 59.029 38.462 0.00 0.00 31.21 3.33
4625 5314 6.471519 GCATCTACAGATTCTTTCATTTGTGC 59.528 38.462 0.00 0.00 31.21 4.57
4626 5315 7.532571 CATCTACAGATTCTTTCATTTGTGCA 58.467 34.615 0.00 0.00 31.21 4.57
4627 5316 6.902341 TCTACAGATTCTTTCATTTGTGCAC 58.098 36.000 10.75 10.75 0.00 4.57
4684 5378 5.012046 CCAAGGTGATTAAAGGCTCCTTTTT 59.988 40.000 17.95 7.55 42.93 1.94
4705 5399 6.464895 TTTGATCCTTTATTTTGCAAAGCG 57.535 33.333 12.41 0.77 32.69 4.68
4723 5417 5.485662 AAGCGGAATAGTGTGATTAAAGC 57.514 39.130 0.00 0.00 0.00 3.51
4892 5586 5.649395 TGCAAAAGGAGGTCAGATCTTATTG 59.351 40.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.135139 GTCGAACACATGAGCACAGAA 58.865 47.619 0.00 0.00 0.00 3.02
87 88 0.996583 CAACAGGTAAGGGGGCCTTA 59.003 55.000 0.84 0.00 42.74 2.69
162 167 1.892209 ATTTGTTCGGTTCCTCGCTT 58.108 45.000 0.00 0.00 0.00 4.68
255 260 1.550976 GGGTCTGTTCGAATGTCCTCT 59.449 52.381 0.00 0.00 0.00 3.69
272 277 1.493871 TCTAGCTAGCCGACTAAGGGT 59.506 52.381 16.35 0.00 45.09 4.34
311 316 3.628769 GGGAGAGTGGACACCTAAGAGAT 60.629 52.174 0.00 0.00 0.00 2.75
405 415 1.514553 GCCTCCAAATGCTTGCCTC 59.485 57.895 0.00 0.00 0.00 4.70
410 420 0.827507 AACACGGCCTCCAAATGCTT 60.828 50.000 0.00 0.00 0.00 3.91
435 445 5.181056 ACGAACATCAGTATGCAAACATGAA 59.819 36.000 0.00 0.00 37.04 2.57
436 446 4.694982 ACGAACATCAGTATGCAAACATGA 59.305 37.500 0.00 0.00 37.04 3.07
437 447 4.973396 ACGAACATCAGTATGCAAACATG 58.027 39.130 0.00 0.00 37.04 3.21
438 448 6.371548 ACTTACGAACATCAGTATGCAAACAT 59.628 34.615 0.00 0.00 40.49 2.71
447 461 6.755141 GCCAATCTTACTTACGAACATCAGTA 59.245 38.462 0.00 0.00 0.00 2.74
451 465 4.802039 TCGCCAATCTTACTTACGAACATC 59.198 41.667 0.00 0.00 0.00 3.06
459 473 5.676079 GCAAGCATTTCGCCAATCTTACTTA 60.676 40.000 0.00 0.00 44.04 2.24
520 536 8.992073 GCAATCAAAATTGGTAGAGTTGAATTT 58.008 29.630 0.79 0.00 42.18 1.82
631 654 6.207417 ACTTATCCACACAAAGGATTTCACAG 59.793 38.462 0.00 0.00 43.21 3.66
677 700 1.621317 TCGGTTTGAGCCTATCACACA 59.379 47.619 0.00 0.00 39.87 3.72
678 701 2.271800 CTCGGTTTGAGCCTATCACAC 58.728 52.381 0.00 0.00 37.77 3.82
679 702 2.672961 CTCGGTTTGAGCCTATCACA 57.327 50.000 0.00 0.00 37.77 3.58
695 718 3.248602 CCTTTCCTTTGTTCTGTGACTCG 59.751 47.826 0.00 0.00 0.00 4.18
704 727 2.632512 TCATTGCCCCTTTCCTTTGTTC 59.367 45.455 0.00 0.00 0.00 3.18
718 741 2.927553 AACTCATCGCTTTCATTGCC 57.072 45.000 0.00 0.00 0.00 4.52
742 765 2.237392 CCCCTCAAACAAAACACCCAAA 59.763 45.455 0.00 0.00 0.00 3.28
745 768 1.491668 ACCCCTCAAACAAAACACCC 58.508 50.000 0.00 0.00 0.00 4.61
747 770 7.618502 AAAAATTACCCCTCAAACAAAACAC 57.381 32.000 0.00 0.00 0.00 3.32
779 1068 8.661257 CGTTTTTCATTACCCTTCAAACTTTTT 58.339 29.630 0.00 0.00 0.00 1.94
849 1143 3.384467 CGTCTTCAAATTTGGGCCCATAT 59.616 43.478 29.23 24.62 0.00 1.78
905 1199 2.307496 TGGGACGTTTACTGGACCTA 57.693 50.000 0.00 0.00 0.00 3.08
951 1245 3.563088 TTGCAGCGCCGCTATTCG 61.563 61.111 13.03 0.00 36.40 3.34
952 1246 2.023320 GTTGCAGCGCCGCTATTC 59.977 61.111 13.03 4.63 36.40 1.75
953 1247 3.508840 GGTTGCAGCGCCGCTATT 61.509 61.111 13.03 0.00 36.40 1.73
1170 1465 0.392863 CCTTGCGGATCATGGTGTCA 60.393 55.000 0.00 0.00 35.79 3.58
1251 1546 1.165284 GGAACGCGGGGTACAAACAA 61.165 55.000 12.47 0.00 0.00 2.83
1252 1547 1.597578 GGAACGCGGGGTACAAACA 60.598 57.895 12.47 0.00 0.00 2.83
1253 1548 1.293963 GAGGAACGCGGGGTACAAAC 61.294 60.000 12.47 0.00 0.00 2.93
1254 1549 1.004679 GAGGAACGCGGGGTACAAA 60.005 57.895 12.47 0.00 0.00 2.83
1259 1554 2.743126 GAAAAGGAGGAACGCGGGGT 62.743 60.000 12.47 0.00 0.00 4.95
1473 1770 1.754745 GTCCTTGCTGGTCTGGACA 59.245 57.895 6.18 0.00 45.87 4.02
1539 1837 4.186159 CAATGGTGATTGGGAAAGAATGC 58.814 43.478 0.00 0.00 36.12 3.56
1556 1854 3.385433 ACATGACCCAATATGTGCAATGG 59.615 43.478 0.00 0.00 36.26 3.16
1558 1856 4.539726 AGACATGACCCAATATGTGCAAT 58.460 39.130 0.00 0.00 37.63 3.56
1561 1859 5.008019 CACTAAGACATGACCCAATATGTGC 59.992 44.000 0.00 0.00 37.63 4.57
1562 1860 6.037500 CACACTAAGACATGACCCAATATGTG 59.962 42.308 0.00 0.44 37.63 3.21
1563 1861 6.070251 TCACACTAAGACATGACCCAATATGT 60.070 38.462 0.00 0.00 40.04 2.29
1564 1862 6.348498 TCACACTAAGACATGACCCAATATG 58.652 40.000 0.00 0.00 0.00 1.78
1565 1863 6.560003 TCACACTAAGACATGACCCAATAT 57.440 37.500 0.00 0.00 0.00 1.28
1566 1864 5.626809 GCTCACACTAAGACATGACCCAATA 60.627 44.000 0.00 0.00 0.00 1.90
1570 1868 2.234908 AGCTCACACTAAGACATGACCC 59.765 50.000 0.00 0.00 0.00 4.46
1572 1870 4.390297 GGAAAGCTCACACTAAGACATGAC 59.610 45.833 0.00 0.00 0.00 3.06
1573 1871 4.569943 GGAAAGCTCACACTAAGACATGA 58.430 43.478 0.00 0.00 0.00 3.07
1575 1873 3.006967 ACGGAAAGCTCACACTAAGACAT 59.993 43.478 0.00 0.00 0.00 3.06
1576 1874 2.364324 ACGGAAAGCTCACACTAAGACA 59.636 45.455 0.00 0.00 0.00 3.41
1577 1875 3.027974 ACGGAAAGCTCACACTAAGAC 57.972 47.619 0.00 0.00 0.00 3.01
1578 1876 3.390135 CAACGGAAAGCTCACACTAAGA 58.610 45.455 0.00 0.00 0.00 2.10
1579 1877 2.480419 CCAACGGAAAGCTCACACTAAG 59.520 50.000 0.00 0.00 0.00 2.18
1580 1878 2.103432 TCCAACGGAAAGCTCACACTAA 59.897 45.455 0.00 0.00 0.00 2.24
1581 1879 1.689813 TCCAACGGAAAGCTCACACTA 59.310 47.619 0.00 0.00 0.00 2.74
1582 1880 0.468226 TCCAACGGAAAGCTCACACT 59.532 50.000 0.00 0.00 0.00 3.55
1596 1920 6.554334 TGTTCAGTTAAGCTATGTTCCAAC 57.446 37.500 0.00 0.00 0.00 3.77
1629 1954 2.612672 TCTAGATACGCGACCAAGTGAG 59.387 50.000 15.93 0.00 0.00 3.51
1642 1967 5.878627 TCTACCACTAAGGGCTCTAGATAC 58.121 45.833 0.00 0.00 43.89 2.24
1652 1977 6.238648 ACATTTGAGTTTCTACCACTAAGGG 58.761 40.000 0.00 0.00 43.89 3.95
1679 2007 3.821421 AAGCAACGAATACCCCTAGAG 57.179 47.619 0.00 0.00 0.00 2.43
1692 2020 2.356382 TCCCAGTTTGTACAAAGCAACG 59.644 45.455 21.12 8.34 0.00 4.10
1693 2021 4.097286 TCTTCCCAGTTTGTACAAAGCAAC 59.903 41.667 21.12 10.42 0.00 4.17
1694 2022 4.097286 GTCTTCCCAGTTTGTACAAAGCAA 59.903 41.667 21.12 8.71 0.00 3.91
1700 2028 3.630312 GCAAAGTCTTCCCAGTTTGTACA 59.370 43.478 0.00 0.00 38.48 2.90
1721 2049 2.910440 CCCCAGCTCAAATTGATGGGC 61.910 57.143 23.01 12.11 42.62 5.36
1722 2050 1.117150 CCCCAGCTCAAATTGATGGG 58.883 55.000 21.96 21.96 43.26 4.00
1723 2051 0.462789 GCCCCAGCTCAAATTGATGG 59.537 55.000 8.31 8.31 35.50 3.51
1735 2063 0.548510 AAGGAATACTCAGCCCCAGC 59.451 55.000 0.00 0.00 40.32 4.85
1739 2074 1.065126 AGCACAAGGAATACTCAGCCC 60.065 52.381 0.00 0.00 0.00 5.19
1741 2076 5.880054 TTTTAGCACAAGGAATACTCAGC 57.120 39.130 0.00 0.00 0.00 4.26
1822 2157 7.146648 GGCTATAACCATCTCACAGTAAGTAC 58.853 42.308 0.00 0.00 0.00 2.73
1844 2179 4.828939 TCTCAAAATTGTGAAGACATGGCT 59.171 37.500 0.00 0.00 30.13 4.75
1850 2185 9.055248 CGTCATTTATCTCAAAATTGTGAAGAC 57.945 33.333 0.00 0.05 34.77 3.01
1852 2187 9.270576 CTCGTCATTTATCTCAAAATTGTGAAG 57.729 33.333 0.00 0.00 34.77 3.02
1853 2188 8.783093 ACTCGTCATTTATCTCAAAATTGTGAA 58.217 29.630 0.00 0.00 34.77 3.18
1854 2189 8.322906 ACTCGTCATTTATCTCAAAATTGTGA 57.677 30.769 0.00 0.00 35.47 3.58
1880 2225 8.181904 ACAATCTGACATCTTGTTAACCATTT 57.818 30.769 2.48 0.00 29.06 2.32
1916 2261 4.404394 TCGCTTGGTTAATAGAGGATGACA 59.596 41.667 0.00 0.00 0.00 3.58
1938 2283 9.860898 AGCATGTTTTATAAGAAATTGGTTCTC 57.139 29.630 0.00 0.00 46.36 2.87
1996 2342 7.931015 TCCTTTACATATCAGGTATGGTTCT 57.069 36.000 5.64 0.00 43.70 3.01
2010 2360 6.811253 ACATTGTTTCGCTTCCTTTACATA 57.189 33.333 0.00 0.00 0.00 2.29
2013 2363 9.859692 GTATATACATTGTTTCGCTTCCTTTAC 57.140 33.333 8.05 0.00 0.00 2.01
2031 2381 8.679344 AAGGTGGATGTGATATGGTATATACA 57.321 34.615 14.70 1.84 0.00 2.29
2032 2382 9.383519 CAAAGGTGGATGTGATATGGTATATAC 57.616 37.037 4.14 4.14 0.00 1.47
2058 2408 3.427863 GTCGCTTGTAAACACTACAGACC 59.572 47.826 0.00 0.00 0.00 3.85
2060 2410 3.068448 TGGTCGCTTGTAAACACTACAGA 59.932 43.478 0.00 0.00 0.00 3.41
2061 2411 3.386486 TGGTCGCTTGTAAACACTACAG 58.614 45.455 0.00 0.00 0.00 2.74
2087 2438 6.319399 TGACCTTCTTTTGTTTCGAGTTTTC 58.681 36.000 0.00 0.00 0.00 2.29
2117 2468 8.450578 TGTTGAACTCTTGAAGTCATGTTATT 57.549 30.769 0.00 0.00 37.17 1.40
2136 2487 5.481824 AGGACAGACACTGATAGATGTTGAA 59.518 40.000 5.76 0.00 35.18 2.69
2143 2494 6.267699 TCAGAAAAAGGACAGACACTGATAGA 59.732 38.462 5.76 0.00 35.18 1.98
2144 2495 6.459066 TCAGAAAAAGGACAGACACTGATAG 58.541 40.000 5.76 0.00 35.18 2.08
2145 2496 6.419484 TCAGAAAAAGGACAGACACTGATA 57.581 37.500 5.76 0.00 35.18 2.15
2146 2497 5.296151 TCAGAAAAAGGACAGACACTGAT 57.704 39.130 5.76 0.00 35.18 2.90
2147 2498 4.753516 TCAGAAAAAGGACAGACACTGA 57.246 40.909 5.76 0.00 35.18 3.41
2148 2499 4.035675 GGTTCAGAAAAAGGACAGACACTG 59.964 45.833 0.00 0.00 37.52 3.66
2149 2500 4.080299 AGGTTCAGAAAAAGGACAGACACT 60.080 41.667 0.00 0.00 0.00 3.55
2150 2501 4.200092 AGGTTCAGAAAAAGGACAGACAC 58.800 43.478 0.00 0.00 0.00 3.67
2151 2502 4.503714 AGGTTCAGAAAAAGGACAGACA 57.496 40.909 0.00 0.00 0.00 3.41
2152 2503 5.357032 TGAAAGGTTCAGAAAAAGGACAGAC 59.643 40.000 0.00 0.00 34.08 3.51
2158 2509 6.768381 AGTAGAGTGAAAGGTTCAGAAAAAGG 59.232 38.462 0.00 0.00 41.01 3.11
2162 2513 5.509163 CCGAGTAGAGTGAAAGGTTCAGAAA 60.509 44.000 0.00 0.00 41.01 2.52
2196 2547 3.861341 CACCACATCCCTACAGGTG 57.139 57.895 0.00 0.00 43.14 4.00
2300 2652 2.754552 TGGCTGTCCAGAAACAATATGC 59.245 45.455 0.00 0.00 37.47 3.14
2316 2668 3.009723 CAGGTTACTGGTTGTATGGCTG 58.990 50.000 0.00 0.00 41.13 4.85
2329 2681 2.028930 GCTAGCACTGTCACAGGTTACT 60.029 50.000 10.28 3.19 35.51 2.24
2330 2682 2.028930 AGCTAGCACTGTCACAGGTTAC 60.029 50.000 18.83 0.00 35.51 2.50
2331 2683 2.248248 AGCTAGCACTGTCACAGGTTA 58.752 47.619 18.83 0.04 35.51 2.85
2332 2684 1.051812 AGCTAGCACTGTCACAGGTT 58.948 50.000 18.83 0.00 35.51 3.50
2334 2686 2.611518 GTTAGCTAGCACTGTCACAGG 58.388 52.381 18.83 0.00 35.51 4.00
2347 2700 6.876789 TCATCCAAAACAGAAATCGTTAGCTA 59.123 34.615 0.00 0.00 0.00 3.32
2350 2703 6.072728 TGGTCATCCAAAACAGAAATCGTTAG 60.073 38.462 0.00 0.00 41.25 2.34
2615 2968 5.634896 GTGCTTTCACTGAACATAATGGAG 58.365 41.667 0.00 0.00 40.03 3.86
2616 2969 5.627499 GTGCTTTCACTGAACATAATGGA 57.373 39.130 0.00 0.00 40.03 3.41
2657 3254 7.121907 ACCCACATTAAACAACAAAGCAATTTT 59.878 29.630 0.00 0.00 0.00 1.82
2696 3293 5.034797 GCACAGTGTTCCAGTTCTTTTAAC 58.965 41.667 1.61 0.00 0.00 2.01
2705 3302 0.740737 GCAAAGCACAGTGTTCCAGT 59.259 50.000 1.61 0.00 0.00 4.00
2714 3311 6.145535 CCTTTAAGTTCTAAGCAAAGCACAG 58.854 40.000 0.00 0.00 0.00 3.66
2719 3316 4.522789 TGGCCCTTTAAGTTCTAAGCAAAG 59.477 41.667 0.00 0.00 0.00 2.77
2741 3340 5.097529 CACATATGCTTGGTAAAACAGCTG 58.902 41.667 13.48 13.48 0.00 4.24
2762 3361 7.335924 TCAGTTAATAAGAAACCATAGCACCAC 59.664 37.037 0.00 0.00 0.00 4.16
2764 3363 7.859325 TCAGTTAATAAGAAACCATAGCACC 57.141 36.000 0.00 0.00 0.00 5.01
2768 3367 8.946085 TGCAGTTCAGTTAATAAGAAACCATAG 58.054 33.333 0.00 0.00 0.00 2.23
2792 3391 7.486802 AAAAAGGCTGATGCATATTATTTGC 57.513 32.000 0.00 0.74 41.91 3.68
2823 3429 7.652909 ACAAATGTGTTGATGTTGATTAACAGG 59.347 33.333 9.11 0.00 41.85 4.00
2853 3459 1.685517 GGTAGTGGAACCGGGAGATAC 59.314 57.143 6.32 0.70 37.80 2.24
2861 3467 2.379972 AGATCTCAGGTAGTGGAACCG 58.620 52.381 0.00 0.00 44.77 4.44
2863 3469 5.407407 TTCAAGATCTCAGGTAGTGGAAC 57.593 43.478 0.00 0.00 0.00 3.62
2866 3472 5.667539 TCTTTCAAGATCTCAGGTAGTGG 57.332 43.478 0.00 0.00 0.00 4.00
2887 3493 5.940192 TTGTTTCACACTATCCACACATC 57.060 39.130 0.00 0.00 0.00 3.06
2897 3505 5.924356 TGTCTCCATCTTTGTTTCACACTA 58.076 37.500 0.00 0.00 0.00 2.74
2918 3526 8.632679 ACTCATAAACTGATTGTGTTCAAATGT 58.367 29.630 0.00 0.00 37.11 2.71
2919 3527 8.908678 CACTCATAAACTGATTGTGTTCAAATG 58.091 33.333 0.00 0.00 37.11 2.32
2920 3528 8.632679 ACACTCATAAACTGATTGTGTTCAAAT 58.367 29.630 0.00 0.00 43.75 2.32
2940 3576 4.819105 ATTATCTGGTTCGGAACACTCA 57.181 40.909 21.36 10.06 0.00 3.41
2941 3577 7.039882 TCTAAATTATCTGGTTCGGAACACTC 58.960 38.462 21.36 6.01 0.00 3.51
2943 3579 7.280205 ACATCTAAATTATCTGGTTCGGAACAC 59.720 37.037 21.36 11.74 0.00 3.32
2945 3581 7.787725 ACATCTAAATTATCTGGTTCGGAAC 57.212 36.000 12.41 12.41 0.00 3.62
2946 3582 8.920174 TCTACATCTAAATTATCTGGTTCGGAA 58.080 33.333 0.00 0.00 0.00 4.30
2995 3633 7.817641 TGTATCCATCGATTCTACTGATGTAC 58.182 38.462 0.00 0.00 38.22 2.90
3018 3656 3.833559 ATTTCCAAAGGACCCTGATGT 57.166 42.857 0.00 0.00 0.00 3.06
3047 3685 0.034896 AGGGTGTAAACCGTGCAGAG 59.965 55.000 0.00 0.00 0.00 3.35
3052 3690 4.992951 GCCTATTATAGGGTGTAAACCGTG 59.007 45.833 18.83 0.00 46.32 4.94
3065 3703 5.578727 GCGGACTCAATCAAGCCTATTATAG 59.421 44.000 0.00 0.00 0.00 1.31
3074 3713 2.289002 CCTATTGCGGACTCAATCAAGC 59.711 50.000 0.00 0.00 37.75 4.01
3097 3736 0.250770 AGCCTCGAACAGGTTTTCCC 60.251 55.000 0.00 0.00 45.61 3.97
3098 3737 0.875059 CAGCCTCGAACAGGTTTTCC 59.125 55.000 0.00 0.00 45.61 3.13
3099 3738 0.875059 CCAGCCTCGAACAGGTTTTC 59.125 55.000 0.00 0.00 45.61 2.29
3104 3744 1.374758 GACACCAGCCTCGAACAGG 60.375 63.158 0.00 0.00 46.82 4.00
3105 3745 1.734477 CGACACCAGCCTCGAACAG 60.734 63.158 0.00 0.00 31.24 3.16
3118 3758 3.631227 AGGTGACTAGCTATAACCGACAC 59.369 47.826 11.80 8.33 40.61 3.67
3122 3762 3.884091 ACAGAGGTGACTAGCTATAACCG 59.116 47.826 11.80 3.94 44.43 4.44
3128 3768 5.336531 GCTAACAAACAGAGGTGACTAGCTA 60.337 44.000 0.00 0.00 44.43 3.32
3129 3769 4.561734 GCTAACAAACAGAGGTGACTAGCT 60.562 45.833 0.00 0.00 44.43 3.32
3130 3770 3.680458 GCTAACAAACAGAGGTGACTAGC 59.320 47.826 0.00 0.00 44.43 3.42
3131 3771 5.140747 AGCTAACAAACAGAGGTGACTAG 57.859 43.478 0.00 0.00 44.43 2.57
3132 3772 5.047519 GGTAGCTAACAAACAGAGGTGACTA 60.048 44.000 3.20 0.00 44.43 2.59
3144 3784 5.011738 AGCTTCAGTACAGGTAGCTAACAAA 59.988 40.000 12.26 0.00 40.19 2.83
3145 3785 4.527038 AGCTTCAGTACAGGTAGCTAACAA 59.473 41.667 12.26 0.00 40.19 2.83
3146 3786 4.087182 AGCTTCAGTACAGGTAGCTAACA 58.913 43.478 12.26 0.00 40.19 2.41
3159 3799 5.046304 ACAGATAGGAAAGCAAGCTTCAGTA 60.046 40.000 7.88 0.73 34.84 2.74
3160 3800 4.260170 CAGATAGGAAAGCAAGCTTCAGT 58.740 43.478 7.88 0.00 34.84 3.41
3169 3809 2.877097 TGGCAACAGATAGGAAAGCA 57.123 45.000 0.00 0.00 46.17 3.91
3188 3828 3.594603 AGCTATTACAACTGACGCACT 57.405 42.857 0.00 0.00 0.00 4.40
3189 3829 3.243177 GCTAGCTATTACAACTGACGCAC 59.757 47.826 7.70 0.00 0.00 5.34
3190 3830 3.130516 AGCTAGCTATTACAACTGACGCA 59.869 43.478 17.69 0.00 0.00 5.24
3191 3831 3.487574 CAGCTAGCTATTACAACTGACGC 59.512 47.826 18.86 0.00 0.00 5.19
3192 3832 4.500837 CACAGCTAGCTATTACAACTGACG 59.499 45.833 18.86 2.42 0.00 4.35
3193 3833 5.411781 ACACAGCTAGCTATTACAACTGAC 58.588 41.667 18.86 0.00 0.00 3.51
3194 3834 5.661056 ACACAGCTAGCTATTACAACTGA 57.339 39.130 18.86 0.00 0.00 3.41
3195 3835 7.036220 AGTAACACAGCTAGCTATTACAACTG 58.964 38.462 29.22 16.38 0.00 3.16
3206 3846 7.041984 ACAAAAGAAACTAGTAACACAGCTAGC 60.042 37.037 6.62 6.62 38.50 3.42
3213 3853 8.370321 GCACAAAACAAAAGAAACTAGTAACAC 58.630 33.333 0.00 0.00 0.00 3.32
3216 3856 6.251801 GCGCACAAAACAAAAGAAACTAGTAA 59.748 34.615 0.30 0.00 0.00 2.24
3218 3858 4.561213 GCGCACAAAACAAAAGAAACTAGT 59.439 37.500 0.30 0.00 0.00 2.57
3222 3862 3.989705 AGCGCACAAAACAAAAGAAAC 57.010 38.095 11.47 0.00 0.00 2.78
3231 3871 2.405892 AGACATGAAGCGCACAAAAC 57.594 45.000 11.47 5.35 0.00 2.43
3232 3872 4.036262 AGTTTAGACATGAAGCGCACAAAA 59.964 37.500 11.47 3.91 0.00 2.44
3236 3876 2.736721 TCAGTTTAGACATGAAGCGCAC 59.263 45.455 11.47 3.52 0.00 5.34
3237 3877 3.038788 TCAGTTTAGACATGAAGCGCA 57.961 42.857 11.47 0.00 0.00 6.09
3238 3878 5.493735 GTTATCAGTTTAGACATGAAGCGC 58.506 41.667 0.00 0.00 0.00 5.92
3239 3879 5.718246 CGTTATCAGTTTAGACATGAAGCG 58.282 41.667 0.00 0.00 0.00 4.68
3247 3888 3.062234 GTGCTGGCGTTATCAGTTTAGAC 59.938 47.826 0.00 0.00 34.89 2.59
3281 3922 0.538057 CCTCTCACCCAGCTTTGCAA 60.538 55.000 0.00 0.00 0.00 4.08
3283 3924 2.338785 GCCTCTCACCCAGCTTTGC 61.339 63.158 0.00 0.00 0.00 3.68
3284 3925 1.676967 GGCCTCTCACCCAGCTTTG 60.677 63.158 0.00 0.00 0.00 2.77
3289 3930 0.322906 GGAAAAGGCCTCTCACCCAG 60.323 60.000 5.23 0.00 0.00 4.45
3294 3935 4.724279 AGTAAAAGGAAAAGGCCTCTCA 57.276 40.909 5.23 0.00 37.26 3.27
3295 3936 5.770663 AGAAAGTAAAAGGAAAAGGCCTCTC 59.229 40.000 5.23 5.91 37.26 3.20
3296 3937 5.706447 AGAAAGTAAAAGGAAAAGGCCTCT 58.294 37.500 5.23 0.00 37.26 3.69
3297 3938 7.704578 ATAGAAAGTAAAAGGAAAAGGCCTC 57.295 36.000 5.23 0.00 37.26 4.70
3298 3939 9.769677 ATAATAGAAAGTAAAAGGAAAAGGCCT 57.230 29.630 0.00 0.00 40.93 5.19
3351 3992 8.289618 CGGATAATTCAGAAAACAGACAGAAAA 58.710 33.333 0.00 0.00 0.00 2.29
3352 3993 7.444183 ACGGATAATTCAGAAAACAGACAGAAA 59.556 33.333 0.00 0.00 0.00 2.52
3353 3994 6.934645 ACGGATAATTCAGAAAACAGACAGAA 59.065 34.615 0.00 0.00 0.00 3.02
3354 3995 6.368791 CACGGATAATTCAGAAAACAGACAGA 59.631 38.462 0.00 0.00 0.00 3.41
3355 3996 6.368791 TCACGGATAATTCAGAAAACAGACAG 59.631 38.462 0.00 0.00 0.00 3.51
3356 3997 6.227522 TCACGGATAATTCAGAAAACAGACA 58.772 36.000 0.00 0.00 0.00 3.41
3357 3998 6.721571 TCACGGATAATTCAGAAAACAGAC 57.278 37.500 0.00 0.00 0.00 3.51
3358 3999 7.737972 TTTCACGGATAATTCAGAAAACAGA 57.262 32.000 0.00 0.00 0.00 3.41
3392 4033 7.308529 GCATTTGGAGAACTTTTATTTTTGGGG 60.309 37.037 0.00 0.00 0.00 4.96
3394 4035 7.308529 GGGCATTTGGAGAACTTTTATTTTTGG 60.309 37.037 0.00 0.00 0.00 3.28
3395 4036 7.445096 AGGGCATTTGGAGAACTTTTATTTTTG 59.555 33.333 0.00 0.00 0.00 2.44
3396 4037 7.445096 CAGGGCATTTGGAGAACTTTTATTTTT 59.555 33.333 0.00 0.00 0.00 1.94
3398 4039 6.269769 TCAGGGCATTTGGAGAACTTTTATTT 59.730 34.615 0.00 0.00 0.00 1.40
3401 4042 4.735369 TCAGGGCATTTGGAGAACTTTTA 58.265 39.130 0.00 0.00 0.00 1.52
3404 4045 2.978156 TCAGGGCATTTGGAGAACTT 57.022 45.000 0.00 0.00 0.00 2.66
3405 4046 2.978156 TTCAGGGCATTTGGAGAACT 57.022 45.000 0.00 0.00 0.00 3.01
3406 4047 4.248058 CATTTTCAGGGCATTTGGAGAAC 58.752 43.478 0.00 0.00 0.00 3.01
3409 4050 2.833338 TCCATTTTCAGGGCATTTGGAG 59.167 45.455 0.00 0.00 0.00 3.86
3411 4052 2.568509 ACTCCATTTTCAGGGCATTTGG 59.431 45.455 0.00 0.00 0.00 3.28
3412 4053 3.967332 ACTCCATTTTCAGGGCATTTG 57.033 42.857 0.00 0.00 0.00 2.32
3413 4054 5.271598 TCATACTCCATTTTCAGGGCATTT 58.728 37.500 0.00 0.00 0.00 2.32
3414 4055 4.870636 TCATACTCCATTTTCAGGGCATT 58.129 39.130 0.00 0.00 0.00 3.56
3415 4056 4.524802 TCATACTCCATTTTCAGGGCAT 57.475 40.909 0.00 0.00 0.00 4.40
3416 4057 4.524802 ATCATACTCCATTTTCAGGGCA 57.475 40.909 0.00 0.00 0.00 5.36
3417 4058 5.859205 AAATCATACTCCATTTTCAGGGC 57.141 39.130 0.00 0.00 0.00 5.19
3451 4092 9.308318 GTGTTTTAAGTGCCAGAAATTCTTAAA 57.692 29.630 0.00 0.00 38.17 1.52
3452 4093 8.470805 TGTGTTTTAAGTGCCAGAAATTCTTAA 58.529 29.630 0.00 0.00 0.00 1.85
3453 4094 7.918562 GTGTGTTTTAAGTGCCAGAAATTCTTA 59.081 33.333 0.00 0.00 0.00 2.10
3454 4095 6.756542 GTGTGTTTTAAGTGCCAGAAATTCTT 59.243 34.615 0.00 0.00 0.00 2.52
3455 4096 6.273071 GTGTGTTTTAAGTGCCAGAAATTCT 58.727 36.000 0.00 0.00 0.00 2.40
3456 4097 5.462068 GGTGTGTTTTAAGTGCCAGAAATTC 59.538 40.000 0.00 0.00 0.00 2.17
3457 4098 5.105146 TGGTGTGTTTTAAGTGCCAGAAATT 60.105 36.000 0.00 0.00 0.00 1.82
3458 4099 4.404073 TGGTGTGTTTTAAGTGCCAGAAAT 59.596 37.500 0.00 0.00 0.00 2.17
3459 4100 3.764434 TGGTGTGTTTTAAGTGCCAGAAA 59.236 39.130 0.00 0.00 0.00 2.52
3460 4101 3.357203 TGGTGTGTTTTAAGTGCCAGAA 58.643 40.909 0.00 0.00 0.00 3.02
3461 4102 3.006112 TGGTGTGTTTTAAGTGCCAGA 57.994 42.857 0.00 0.00 0.00 3.86
3462 4103 3.490761 CCTTGGTGTGTTTTAAGTGCCAG 60.491 47.826 0.00 0.00 0.00 4.85
3463 4104 2.428890 CCTTGGTGTGTTTTAAGTGCCA 59.571 45.455 0.00 0.00 0.00 4.92
3464 4105 2.223947 CCCTTGGTGTGTTTTAAGTGCC 60.224 50.000 0.00 0.00 0.00 5.01
3465 4106 2.223947 CCCCTTGGTGTGTTTTAAGTGC 60.224 50.000 0.00 0.00 0.00 4.40
3466 4107 3.067601 GTCCCCTTGGTGTGTTTTAAGTG 59.932 47.826 0.00 0.00 0.00 3.16
3467 4108 3.293337 GTCCCCTTGGTGTGTTTTAAGT 58.707 45.455 0.00 0.00 0.00 2.24
3468 4109 2.626266 GGTCCCCTTGGTGTGTTTTAAG 59.374 50.000 0.00 0.00 0.00 1.85
3469 4110 2.668625 GGTCCCCTTGGTGTGTTTTAA 58.331 47.619 0.00 0.00 0.00 1.52
3470 4111 1.133419 GGGTCCCCTTGGTGTGTTTTA 60.133 52.381 0.00 0.00 0.00 1.52
3471 4112 0.397957 GGGTCCCCTTGGTGTGTTTT 60.398 55.000 0.00 0.00 0.00 2.43
3472 4113 1.231928 GGGTCCCCTTGGTGTGTTT 59.768 57.895 0.00 0.00 0.00 2.83
3473 4114 2.009882 TGGGTCCCCTTGGTGTGTT 61.010 57.895 5.13 0.00 36.94 3.32
3474 4115 2.369015 TGGGTCCCCTTGGTGTGT 60.369 61.111 5.13 0.00 36.94 3.72
3475 4116 2.115266 GTGGGTCCCCTTGGTGTG 59.885 66.667 5.13 0.00 36.94 3.82
3476 4117 3.182996 GGTGGGTCCCCTTGGTGT 61.183 66.667 5.13 0.00 36.94 4.16
3477 4118 2.092904 AATGGTGGGTCCCCTTGGTG 62.093 60.000 5.13 0.00 36.94 4.17
3478 4119 1.376249 AAATGGTGGGTCCCCTTGGT 61.376 55.000 5.13 0.00 36.94 3.67
3479 4120 0.707616 TAAATGGTGGGTCCCCTTGG 59.292 55.000 5.13 0.00 36.94 3.61
3480 4121 1.959989 GCTAAATGGTGGGTCCCCTTG 60.960 57.143 5.13 0.00 36.94 3.61
3481 4122 0.335019 GCTAAATGGTGGGTCCCCTT 59.665 55.000 5.13 0.00 36.94 3.95
3482 4123 0.849094 TGCTAAATGGTGGGTCCCCT 60.849 55.000 5.13 0.00 36.94 4.79
3483 4124 0.040499 TTGCTAAATGGTGGGTCCCC 59.960 55.000 5.13 0.00 34.77 4.81
3484 4125 1.931635 TTTGCTAAATGGTGGGTCCC 58.068 50.000 0.00 0.00 34.77 4.46
3485 4126 4.020543 TGTATTTGCTAAATGGTGGGTCC 58.979 43.478 4.89 0.00 32.38 4.46
3486 4127 4.947388 TCTGTATTTGCTAAATGGTGGGTC 59.053 41.667 4.89 0.00 32.38 4.46
3487 4128 4.929479 TCTGTATTTGCTAAATGGTGGGT 58.071 39.130 4.89 0.00 32.38 4.51
3488 4129 7.581213 TTATCTGTATTTGCTAAATGGTGGG 57.419 36.000 4.89 0.00 32.38 4.61
3489 4130 8.465999 TGTTTATCTGTATTTGCTAAATGGTGG 58.534 33.333 4.89 0.00 32.38 4.61
3490 4131 9.853555 TTGTTTATCTGTATTTGCTAAATGGTG 57.146 29.630 4.89 0.00 32.38 4.17
3492 4133 9.520204 CCTTGTTTATCTGTATTTGCTAAATGG 57.480 33.333 4.89 0.00 32.38 3.16
3493 4134 9.023967 GCCTTGTTTATCTGTATTTGCTAAATG 57.976 33.333 4.89 0.00 32.38 2.32
3494 4135 8.748412 TGCCTTGTTTATCTGTATTTGCTAAAT 58.252 29.630 0.00 0.00 34.90 1.40
3495 4136 8.116651 TGCCTTGTTTATCTGTATTTGCTAAA 57.883 30.769 0.00 0.00 0.00 1.85
3496 4137 7.695480 TGCCTTGTTTATCTGTATTTGCTAA 57.305 32.000 0.00 0.00 0.00 3.09
3497 4138 7.775093 AGATGCCTTGTTTATCTGTATTTGCTA 59.225 33.333 0.00 0.00 30.41 3.49
3498 4139 6.604795 AGATGCCTTGTTTATCTGTATTTGCT 59.395 34.615 0.00 0.00 30.41 3.91
3499 4140 6.694411 CAGATGCCTTGTTTATCTGTATTTGC 59.306 38.462 0.00 0.00 41.66 3.68
3500 4141 6.694411 GCAGATGCCTTGTTTATCTGTATTTG 59.306 38.462 13.15 0.00 45.93 2.32
3501 4142 6.604795 AGCAGATGCCTTGTTTATCTGTATTT 59.395 34.615 13.15 0.00 45.93 1.40
3502 4143 6.125029 AGCAGATGCCTTGTTTATCTGTATT 58.875 36.000 13.15 0.53 45.93 1.89
3503 4144 5.688807 AGCAGATGCCTTGTTTATCTGTAT 58.311 37.500 13.15 2.70 45.93 2.29
3504 4145 5.102953 AGCAGATGCCTTGTTTATCTGTA 57.897 39.130 13.15 0.00 45.93 2.74
3505 4146 3.960571 AGCAGATGCCTTGTTTATCTGT 58.039 40.909 13.15 0.95 45.93 3.41
3506 4147 4.397103 TCAAGCAGATGCCTTGTTTATCTG 59.603 41.667 0.14 8.64 46.57 2.90
3507 4148 4.592942 TCAAGCAGATGCCTTGTTTATCT 58.407 39.130 0.14 0.00 43.38 1.98
3508 4149 4.970662 TCAAGCAGATGCCTTGTTTATC 57.029 40.909 0.14 0.00 43.38 1.75
3509 4150 5.726980 TTTCAAGCAGATGCCTTGTTTAT 57.273 34.783 0.14 0.00 43.38 1.40
3510 4151 5.068987 AGTTTTCAAGCAGATGCCTTGTTTA 59.931 36.000 0.14 0.00 43.38 2.01
3511 4152 4.122046 GTTTTCAAGCAGATGCCTTGTTT 58.878 39.130 0.14 0.00 43.38 2.83
3512 4153 3.385755 AGTTTTCAAGCAGATGCCTTGTT 59.614 39.130 0.14 0.00 43.38 2.83
3513 4154 2.961062 AGTTTTCAAGCAGATGCCTTGT 59.039 40.909 0.14 0.00 43.38 3.16
3514 4155 3.314553 CAGTTTTCAAGCAGATGCCTTG 58.685 45.455 0.14 6.02 43.38 3.61
3515 4156 2.298163 CCAGTTTTCAAGCAGATGCCTT 59.702 45.455 0.14 0.00 43.38 4.35
3516 4157 1.891150 CCAGTTTTCAAGCAGATGCCT 59.109 47.619 0.14 0.00 43.38 4.75
3517 4158 1.888512 TCCAGTTTTCAAGCAGATGCC 59.111 47.619 0.14 0.00 43.38 4.40
3518 4159 2.294233 TGTCCAGTTTTCAAGCAGATGC 59.706 45.455 0.00 0.00 42.49 3.91
3519 4160 4.572985 TTGTCCAGTTTTCAAGCAGATG 57.427 40.909 0.00 0.00 0.00 2.90
3520 4161 5.535333 CATTTGTCCAGTTTTCAAGCAGAT 58.465 37.500 0.00 0.00 0.00 2.90
3521 4162 4.737352 GCATTTGTCCAGTTTTCAAGCAGA 60.737 41.667 0.00 0.00 0.00 4.26
3522 4163 3.492011 GCATTTGTCCAGTTTTCAAGCAG 59.508 43.478 0.00 0.00 0.00 4.24
3523 4164 3.132646 AGCATTTGTCCAGTTTTCAAGCA 59.867 39.130 0.00 0.00 0.00 3.91
3524 4165 3.721035 AGCATTTGTCCAGTTTTCAAGC 58.279 40.909 0.00 0.00 0.00 4.01
3525 4166 6.980397 AGTTTAGCATTTGTCCAGTTTTCAAG 59.020 34.615 0.00 0.00 0.00 3.02
3526 4167 6.872920 AGTTTAGCATTTGTCCAGTTTTCAA 58.127 32.000 0.00 0.00 0.00 2.69
3527 4168 6.463995 AGTTTAGCATTTGTCCAGTTTTCA 57.536 33.333 0.00 0.00 0.00 2.69
3528 4169 6.756542 ACAAGTTTAGCATTTGTCCAGTTTTC 59.243 34.615 0.00 0.00 29.55 2.29
3529 4170 6.639563 ACAAGTTTAGCATTTGTCCAGTTTT 58.360 32.000 0.00 0.00 29.55 2.43
3530 4171 6.220726 ACAAGTTTAGCATTTGTCCAGTTT 57.779 33.333 0.00 0.00 29.55 2.66
3531 4172 5.852282 ACAAGTTTAGCATTTGTCCAGTT 57.148 34.783 0.00 0.00 29.55 3.16
3532 4173 5.591099 CAACAAGTTTAGCATTTGTCCAGT 58.409 37.500 0.00 0.00 34.18 4.00
3533 4174 4.445385 GCAACAAGTTTAGCATTTGTCCAG 59.555 41.667 0.00 0.00 34.18 3.86
3534 4175 4.142071 TGCAACAAGTTTAGCATTTGTCCA 60.142 37.500 0.00 0.00 34.18 4.02
3535 4176 4.367450 TGCAACAAGTTTAGCATTTGTCC 58.633 39.130 0.00 0.00 34.18 4.02
3536 4177 5.463061 ACATGCAACAAGTTTAGCATTTGTC 59.537 36.000 7.71 0.00 44.63 3.18
3537 4178 5.358922 ACATGCAACAAGTTTAGCATTTGT 58.641 33.333 7.71 4.22 44.63 2.83
3538 4179 5.910637 ACATGCAACAAGTTTAGCATTTG 57.089 34.783 7.71 3.72 44.63 2.32
3539 4180 6.923928 AAACATGCAACAAGTTTAGCATTT 57.076 29.167 7.71 1.05 44.63 2.32
3540 4181 6.923928 AAAACATGCAACAAGTTTAGCATT 57.076 29.167 7.71 0.00 44.63 3.56
3542 4183 8.430801 AAATAAAACATGCAACAAGTTTAGCA 57.569 26.923 9.38 1.23 34.83 3.49
3577 4218 2.367567 TCACCTAGACAACAGTTCCCAC 59.632 50.000 0.00 0.00 0.00 4.61
3578 4219 2.684943 TCACCTAGACAACAGTTCCCA 58.315 47.619 0.00 0.00 0.00 4.37
3583 4224 8.157476 AGATACAAAAATCACCTAGACAACAGT 58.843 33.333 0.00 0.00 0.00 3.55
3586 4227 8.547967 TGAGATACAAAAATCACCTAGACAAC 57.452 34.615 0.00 0.00 0.00 3.32
3591 4232 9.219603 TCAACTTGAGATACAAAAATCACCTAG 57.780 33.333 0.00 0.00 38.08 3.02
3595 4236 8.345565 ACTGTCAACTTGAGATACAAAAATCAC 58.654 33.333 0.00 0.00 38.08 3.06
3596 4237 8.450578 ACTGTCAACTTGAGATACAAAAATCA 57.549 30.769 0.00 0.00 38.08 2.57
3597 4238 8.778358 AGACTGTCAACTTGAGATACAAAAATC 58.222 33.333 10.88 0.00 38.08 2.17
3601 4242 6.816136 TGAGACTGTCAACTTGAGATACAAA 58.184 36.000 10.88 0.00 33.05 2.83
3602 4243 6.405278 TGAGACTGTCAACTTGAGATACAA 57.595 37.500 10.88 0.00 32.67 2.41
3603 4244 6.596309 ATGAGACTGTCAACTTGAGATACA 57.404 37.500 10.88 0.00 39.19 2.29
3604 4245 6.975772 GGTATGAGACTGTCAACTTGAGATAC 59.024 42.308 10.88 7.07 39.19 2.24
3605 4246 6.663523 TGGTATGAGACTGTCAACTTGAGATA 59.336 38.462 10.88 0.00 39.19 1.98
3622 4272 7.880160 TTTCAGTTTTCCCATATGGTATGAG 57.120 36.000 20.46 4.85 34.77 2.90
3624 4274 7.975616 CACTTTTCAGTTTTCCCATATGGTATG 59.024 37.037 20.46 5.60 34.77 2.39
3636 4286 8.817100 CCATAAGGTTTTCACTTTTCAGTTTTC 58.183 33.333 0.00 0.00 0.00 2.29
3648 4298 6.888088 ACTAACATACCCCATAAGGTTTTCAC 59.112 38.462 0.00 0.00 41.58 3.18
3649 4299 6.887545 CACTAACATACCCCATAAGGTTTTCA 59.112 38.462 0.00 0.00 41.58 2.69
3650 4300 6.320418 CCACTAACATACCCCATAAGGTTTTC 59.680 42.308 0.00 0.00 41.58 2.29
3651 4301 6.011451 TCCACTAACATACCCCATAAGGTTTT 60.011 38.462 0.00 0.00 41.58 2.43
3652 4302 5.493250 TCCACTAACATACCCCATAAGGTTT 59.507 40.000 0.00 0.00 41.58 3.27
3653 4303 5.041015 TCCACTAACATACCCCATAAGGTT 58.959 41.667 0.00 0.00 41.58 3.50
3655 4305 5.640158 TTCCACTAACATACCCCATAAGG 57.360 43.478 0.00 0.00 0.00 2.69
3656 4306 7.832187 TCTTTTTCCACTAACATACCCCATAAG 59.168 37.037 0.00 0.00 0.00 1.73
3658 4308 7.273457 TCTTTTTCCACTAACATACCCCATA 57.727 36.000 0.00 0.00 0.00 2.74
3698 4348 7.014615 GGTAAATGCCATCATCAGAAATAAGGT 59.985 37.037 0.00 0.00 31.27 3.50
3714 4364 8.774546 TTGGATATTTTCATAGGTAAATGCCA 57.225 30.769 9.92 9.92 32.81 4.92
3715 4365 9.476202 GTTTGGATATTTTCATAGGTAAATGCC 57.524 33.333 2.68 4.83 0.00 4.40
3721 4371 9.173021 CACAGTGTTTGGATATTTTCATAGGTA 57.827 33.333 0.00 0.00 0.00 3.08
3723 4373 6.974622 GCACAGTGTTTGGATATTTTCATAGG 59.025 38.462 1.61 0.00 0.00 2.57
3724 4374 6.974622 GGCACAGTGTTTGGATATTTTCATAG 59.025 38.462 1.61 0.00 0.00 2.23
3742 4406 5.050490 GTCATGATAAATCTACGGCACAGT 58.950 41.667 0.00 0.00 0.00 3.55
3745 4409 5.120830 GGATGTCATGATAAATCTACGGCAC 59.879 44.000 0.00 0.00 0.00 5.01
3746 4410 5.237815 GGATGTCATGATAAATCTACGGCA 58.762 41.667 0.00 0.00 0.00 5.69
3747 4411 4.631813 GGGATGTCATGATAAATCTACGGC 59.368 45.833 0.00 0.00 0.00 5.68
3748 4412 5.178797 GGGGATGTCATGATAAATCTACGG 58.821 45.833 0.00 0.00 0.00 4.02
3749 4413 5.793817 TGGGGATGTCATGATAAATCTACG 58.206 41.667 0.00 0.00 0.00 3.51
3750 4414 6.773638 ACTGGGGATGTCATGATAAATCTAC 58.226 40.000 0.00 2.09 0.00 2.59
3751 4415 6.789457 AGACTGGGGATGTCATGATAAATCTA 59.211 38.462 0.00 0.00 36.94 1.98
3752 4416 5.610132 AGACTGGGGATGTCATGATAAATCT 59.390 40.000 0.00 0.00 36.94 2.40
3753 4417 5.874093 AGACTGGGGATGTCATGATAAATC 58.126 41.667 0.00 3.16 36.94 2.17
3754 4418 5.919348 AGACTGGGGATGTCATGATAAAT 57.081 39.130 0.00 0.00 36.94 1.40
3755 4419 5.429762 AGAAGACTGGGGATGTCATGATAAA 59.570 40.000 0.00 0.00 36.94 1.40
3756 4420 4.971282 AGAAGACTGGGGATGTCATGATAA 59.029 41.667 0.00 0.00 36.94 1.75
3757 4421 4.346127 CAGAAGACTGGGGATGTCATGATA 59.654 45.833 0.00 0.00 40.14 2.15
3758 4422 3.136077 CAGAAGACTGGGGATGTCATGAT 59.864 47.826 0.00 0.00 40.14 2.45
3759 4423 2.502947 CAGAAGACTGGGGATGTCATGA 59.497 50.000 0.00 0.00 40.14 3.07
3760 4424 2.915349 CAGAAGACTGGGGATGTCATG 58.085 52.381 0.00 0.00 40.14 3.07
3802 4478 2.356665 TATATGGCCGCCAACAACAT 57.643 45.000 18.00 7.52 36.95 2.71
3806 4482 1.419762 ACTGATATATGGCCGCCAACA 59.580 47.619 18.00 7.93 36.95 3.33
3807 4483 2.185004 ACTGATATATGGCCGCCAAC 57.815 50.000 18.00 6.58 36.95 3.77
3809 4485 4.568072 AAATACTGATATATGGCCGCCA 57.432 40.909 16.17 16.17 38.19 5.69
3810 4486 5.186198 AGAAAATACTGATATATGGCCGCC 58.814 41.667 1.04 1.04 0.00 6.13
3836 4512 7.383687 CCACTAACAGTTCCTCAATGTAGTTA 58.616 38.462 0.00 0.00 0.00 2.24
3837 4513 6.231211 CCACTAACAGTTCCTCAATGTAGTT 58.769 40.000 0.00 0.00 0.00 2.24
3838 4514 5.794894 CCACTAACAGTTCCTCAATGTAGT 58.205 41.667 0.00 0.00 0.00 2.73
3839 4515 4.631813 GCCACTAACAGTTCCTCAATGTAG 59.368 45.833 0.00 0.00 0.00 2.74
3840 4516 4.041075 TGCCACTAACAGTTCCTCAATGTA 59.959 41.667 0.00 0.00 0.00 2.29
3846 4522 2.744202 CACATGCCACTAACAGTTCCTC 59.256 50.000 0.00 0.00 0.00 3.71
3875 4551 4.581409 GTGCCCCACTTTGAACTTTAACTA 59.419 41.667 0.00 0.00 0.00 2.24
3876 4552 3.383505 GTGCCCCACTTTGAACTTTAACT 59.616 43.478 0.00 0.00 0.00 2.24
3877 4553 3.131400 TGTGCCCCACTTTGAACTTTAAC 59.869 43.478 0.00 0.00 35.11 2.01
3878 4554 3.366396 TGTGCCCCACTTTGAACTTTAA 58.634 40.909 0.00 0.00 35.11 1.52
3879 4555 3.019799 TGTGCCCCACTTTGAACTTTA 57.980 42.857 0.00 0.00 35.11 1.85
3886 4562 0.539051 TGGTTTTGTGCCCCACTTTG 59.461 50.000 0.00 0.00 35.11 2.77
3906 4583 4.307432 GTTGACAGAAGCAGCTAGTTACA 58.693 43.478 0.00 0.00 0.00 2.41
3911 4588 1.677217 GGGGTTGACAGAAGCAGCTAG 60.677 57.143 0.00 0.00 0.00 3.42
3920 4597 1.444933 ATCTTGGTGGGGTTGACAGA 58.555 50.000 0.00 0.00 0.00 3.41
3923 4600 4.770010 TCAATTTATCTTGGTGGGGTTGAC 59.230 41.667 0.00 0.00 0.00 3.18
3925 4602 4.772100 AGTCAATTTATCTTGGTGGGGTTG 59.228 41.667 0.00 0.00 0.00 3.77
3954 4631 9.216117 GCTAGTTATCCTCAGAACAGTTTAAAA 57.784 33.333 0.00 0.00 0.00 1.52
3980 4657 4.352600 TTGTGCAAGCAAAACCAAAATG 57.647 36.364 0.00 0.00 0.00 2.32
3998 4675 6.659745 TCAGTTACAGGTACACAGTATTGT 57.340 37.500 0.00 0.00 38.31 2.71
4008 4685 6.002082 AGGAATGGTTTTCAGTTACAGGTAC 58.998 40.000 0.00 0.00 0.00 3.34
4010 4687 5.061721 AGGAATGGTTTTCAGTTACAGGT 57.938 39.130 0.00 0.00 0.00 4.00
4026 4703 8.497554 CAAAAACATCCACAAATGTTAGGAATG 58.502 33.333 2.94 1.02 46.49 2.67
4470 5159 1.077285 CCCTCATGCTGCATCCACA 60.077 57.895 13.10 0.00 0.00 4.17
4471 5160 1.826921 CCCCTCATGCTGCATCCAC 60.827 63.158 13.10 0.00 0.00 4.02
4593 5282 6.716628 TGAAAGAATCTGTAGATGCCAAAAGT 59.283 34.615 0.00 0.00 34.49 2.66
4625 5314 1.228063 AGTTCTGCCAGCACAGGTG 60.228 57.895 0.00 0.00 38.26 4.00
4626 5315 1.228063 CAGTTCTGCCAGCACAGGT 60.228 57.895 0.00 0.00 38.26 4.00
4627 5316 1.071987 TCAGTTCTGCCAGCACAGG 59.928 57.895 0.00 0.00 38.26 4.00
4639 5333 7.764901 CCTTGGGTATCTTTTACTAGTCAGTTC 59.235 40.741 0.00 0.00 36.14 3.01
4684 5378 4.219507 TCCGCTTTGCAAAATAAAGGATCA 59.780 37.500 13.84 0.00 36.04 2.92
4705 5399 5.437060 TGGAGGCTTTAATCACACTATTCC 58.563 41.667 0.00 0.00 0.00 3.01
4723 5417 2.555633 TCCATAGGCCCAATGGAGG 58.444 57.895 26.41 9.01 46.29 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.