Multiple sequence alignment - TraesCS7B01G224200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G224200 chr7B 100.000 2651 0 0 1 2651 424053789 424056439 0.000000e+00 4896
1 TraesCS7B01G224200 chr7B 92.661 109 7 1 1985 2093 181033695 181033588 3.530000e-34 156
2 TraesCS7B01G224200 chr7B 89.157 83 5 3 2386 2464 448657608 448657526 1.680000e-17 100
3 TraesCS7B01G224200 chr7D 93.480 1319 49 21 580 1875 409491594 409492898 0.000000e+00 1925
4 TraesCS7B01G224200 chr7D 96.127 568 18 4 2081 2645 409499652 409500218 0.000000e+00 924
5 TraesCS7B01G224200 chr7D 91.031 223 18 1 281 503 409491338 409491558 1.540000e-77 300
6 TraesCS7B01G224200 chr7D 94.083 169 8 1 1851 2019 409499483 409499649 3.390000e-64 255
7 TraesCS7B01G224200 chr7D 90.083 121 8 4 1995 2113 28862101 28861983 1.270000e-33 154
8 TraesCS7B01G224200 chr7D 90.698 86 4 3 2383 2464 163196538 163196623 7.760000e-21 111
9 TraesCS7B01G224200 chr7A 90.646 1486 69 35 519 1990 470591107 470592536 0.000000e+00 1910
10 TraesCS7B01G224200 chr7A 86.070 201 26 1 307 507 470590959 470591157 5.750000e-52 215
11 TraesCS7B01G224200 chr7A 86.772 189 14 7 2090 2277 470592539 470592717 1.610000e-47 200
12 TraesCS7B01G224200 chr4B 97.112 277 8 0 1 277 81014232 81014508 4.000000e-128 468
13 TraesCS7B01G224200 chr2B 95.668 277 12 0 1 277 91605019 91604743 1.870000e-121 446
14 TraesCS7B01G224200 chr2B 95.307 277 13 0 1 277 170784446 170784722 8.710000e-120 440
15 TraesCS7B01G224200 chr2B 94.224 277 16 0 1 277 621316557 621316281 8.770000e-115 424
16 TraesCS7B01G224200 chr2B 93.165 278 17 2 1 278 171011278 171011003 8.830000e-110 407
17 TraesCS7B01G224200 chr2B 92.086 278 18 4 1 277 64987063 64987337 3.200000e-104 388
18 TraesCS7B01G224200 chr2B 93.578 109 5 2 1985 2091 457144381 457144489 7.590000e-36 161
19 TraesCS7B01G224200 chr6B 93.863 277 16 1 1 277 28058099 28057824 1.470000e-112 416
20 TraesCS7B01G224200 chr6B 93.750 112 5 2 1984 2094 424080610 424080500 1.630000e-37 167
21 TraesCS7B01G224200 chr6B 93.750 112 5 2 1984 2094 424303323 424303213 1.630000e-37 167
22 TraesCS7B01G224200 chr6B 93.636 110 4 3 1986 2094 654640642 654640749 7.590000e-36 161
23 TraesCS7B01G224200 chr1B 93.502 277 18 0 1 277 630536425 630536149 1.900000e-111 412
24 TraesCS7B01G224200 chr5B 93.141 277 18 1 1 277 586323855 586324130 3.180000e-109 405
25 TraesCS7B01G224200 chr5B 95.283 106 4 1 1989 2094 150318097 150318201 1.630000e-37 167
26 TraesCS7B01G224200 chr3D 75.952 499 77 33 1167 1636 488060324 488060808 1.600000e-52 217
27 TraesCS7B01G224200 chr3D 90.361 83 4 4 2377 2455 607831625 607831707 3.610000e-19 106
28 TraesCS7B01G224200 chr3D 93.056 72 4 1 2385 2455 10422040 10422111 1.300000e-18 104
29 TraesCS7B01G224200 chr3B 75.400 500 78 35 1167 1636 650841907 650842391 1.610000e-47 200
30 TraesCS7B01G224200 chr4A 93.694 111 5 2 1985 2095 703218555 703218663 5.870000e-37 165
31 TraesCS7B01G224200 chr1D 92.241 116 7 2 1977 2091 361353545 361353659 2.110000e-36 163
32 TraesCS7B01G224200 chr1D 93.056 72 3 2 2385 2455 413729662 413729732 1.300000e-18 104
33 TraesCS7B01G224200 chr6D 89.683 126 12 1 1966 2091 466538256 466538132 2.730000e-35 159
34 TraesCS7B01G224200 chr6D 93.056 72 4 1 2385 2455 420729686 420729615 1.300000e-18 104
35 TraesCS7B01G224200 chr5D 93.421 76 4 1 2381 2455 40907137 40907212 7.760000e-21 111
36 TraesCS7B01G224200 chr5D 93.056 72 4 1 2385 2455 303832975 303832904 1.300000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G224200 chr7B 424053789 424056439 2650 False 4896.0 4896 100.000000 1 2651 1 chr7B.!!$F1 2650
1 TraesCS7B01G224200 chr7D 409491338 409492898 1560 False 1112.5 1925 92.255500 281 1875 2 chr7D.!!$F2 1594
2 TraesCS7B01G224200 chr7D 409499483 409500218 735 False 589.5 924 95.105000 1851 2645 2 chr7D.!!$F3 794
3 TraesCS7B01G224200 chr7A 470590959 470592717 1758 False 775.0 1910 87.829333 307 2277 3 chr7A.!!$F1 1970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.037512 TCCCAAAAATCCGCGTCGTA 60.038 50.0 4.92 0.0 0.0 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2115 0.037975 GTACTCCCGCCGTCTCAAAA 60.038 55.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.963815 CACCGGCATTTCACAACC 57.036 55.556 0.00 0.00 0.00 3.77
18 19 2.037053 CACCGGCATTTCACAACCA 58.963 52.632 0.00 0.00 0.00 3.67
19 20 0.387202 CACCGGCATTTCACAACCAA 59.613 50.000 0.00 0.00 0.00 3.67
20 21 0.387565 ACCGGCATTTCACAACCAAC 59.612 50.000 0.00 0.00 0.00 3.77
21 22 0.319469 CCGGCATTTCACAACCAACC 60.319 55.000 0.00 0.00 0.00 3.77
22 23 0.387202 CGGCATTTCACAACCAACCA 59.613 50.000 0.00 0.00 0.00 3.67
23 24 1.000731 CGGCATTTCACAACCAACCAT 59.999 47.619 0.00 0.00 0.00 3.55
24 25 2.687370 GGCATTTCACAACCAACCATC 58.313 47.619 0.00 0.00 0.00 3.51
25 26 2.299867 GGCATTTCACAACCAACCATCT 59.700 45.455 0.00 0.00 0.00 2.90
26 27 3.244181 GGCATTTCACAACCAACCATCTT 60.244 43.478 0.00 0.00 0.00 2.40
27 28 4.021544 GGCATTTCACAACCAACCATCTTA 60.022 41.667 0.00 0.00 0.00 2.10
28 29 5.510520 GGCATTTCACAACCAACCATCTTAA 60.511 40.000 0.00 0.00 0.00 1.85
29 30 5.988561 GCATTTCACAACCAACCATCTTAAA 59.011 36.000 0.00 0.00 0.00 1.52
30 31 6.650390 GCATTTCACAACCAACCATCTTAAAT 59.350 34.615 0.00 0.00 0.00 1.40
31 32 7.360269 GCATTTCACAACCAACCATCTTAAATG 60.360 37.037 0.00 0.00 35.02 2.32
32 33 5.720371 TCACAACCAACCATCTTAAATGG 57.280 39.130 12.43 12.43 44.54 3.16
45 46 7.872881 CCATCTTAAATGGTCTCATCAAGATG 58.127 38.462 21.48 21.48 43.62 2.90
46 47 6.932356 TCTTAAATGGTCTCATCAAGATGC 57.068 37.500 5.19 0.00 38.65 3.91
47 48 6.656902 TCTTAAATGGTCTCATCAAGATGCT 58.343 36.000 5.19 0.00 38.65 3.79
48 49 6.541278 TCTTAAATGGTCTCATCAAGATGCTG 59.459 38.462 5.19 1.71 38.65 4.41
49 50 2.034104 TGGTCTCATCAAGATGCTGC 57.966 50.000 5.19 0.00 38.65 5.25
50 51 0.935898 GGTCTCATCAAGATGCTGCG 59.064 55.000 5.19 0.00 38.65 5.18
51 52 1.649664 GTCTCATCAAGATGCTGCGT 58.350 50.000 5.19 0.00 38.65 5.24
52 53 1.592081 GTCTCATCAAGATGCTGCGTC 59.408 52.381 13.90 13.90 38.65 5.19
53 54 1.479730 TCTCATCAAGATGCTGCGTCT 59.520 47.619 18.31 18.31 38.65 4.18
54 55 1.859703 CTCATCAAGATGCTGCGTCTC 59.140 52.381 23.49 6.70 38.65 3.36
55 56 0.935898 CATCAAGATGCTGCGTCTCC 59.064 55.000 23.49 0.00 31.39 3.71
56 57 0.179062 ATCAAGATGCTGCGTCTCCC 60.179 55.000 23.49 0.00 0.00 4.30
57 58 1.817099 CAAGATGCTGCGTCTCCCC 60.817 63.158 23.49 0.00 0.00 4.81
58 59 2.293318 AAGATGCTGCGTCTCCCCA 61.293 57.895 23.49 0.00 0.00 4.96
59 60 2.202987 GATGCTGCGTCTCCCCAG 60.203 66.667 14.43 0.00 0.00 4.45
67 68 3.706373 GTCTCCCCAGCCGAGCAA 61.706 66.667 0.00 0.00 0.00 3.91
68 69 3.706373 TCTCCCCAGCCGAGCAAC 61.706 66.667 0.00 0.00 0.00 4.17
69 70 4.020617 CTCCCCAGCCGAGCAACA 62.021 66.667 0.00 0.00 0.00 3.33
70 71 3.329889 TCCCCAGCCGAGCAACAT 61.330 61.111 0.00 0.00 0.00 2.71
71 72 2.361610 CCCCAGCCGAGCAACATT 60.362 61.111 0.00 0.00 0.00 2.71
72 73 1.077787 CCCCAGCCGAGCAACATTA 60.078 57.895 0.00 0.00 0.00 1.90
73 74 0.679640 CCCCAGCCGAGCAACATTAA 60.680 55.000 0.00 0.00 0.00 1.40
74 75 0.734889 CCCAGCCGAGCAACATTAAG 59.265 55.000 0.00 0.00 0.00 1.85
75 76 1.678728 CCCAGCCGAGCAACATTAAGA 60.679 52.381 0.00 0.00 0.00 2.10
76 77 2.083774 CCAGCCGAGCAACATTAAGAA 58.916 47.619 0.00 0.00 0.00 2.52
77 78 2.096496 CCAGCCGAGCAACATTAAGAAG 59.904 50.000 0.00 0.00 0.00 2.85
78 79 2.744202 CAGCCGAGCAACATTAAGAAGT 59.256 45.455 0.00 0.00 0.00 3.01
79 80 3.189287 CAGCCGAGCAACATTAAGAAGTT 59.811 43.478 0.00 0.00 0.00 2.66
80 81 4.391830 CAGCCGAGCAACATTAAGAAGTTA 59.608 41.667 0.00 0.00 0.00 2.24
81 82 5.001232 AGCCGAGCAACATTAAGAAGTTAA 58.999 37.500 0.00 0.00 32.60 2.01
82 83 5.648092 AGCCGAGCAACATTAAGAAGTTAAT 59.352 36.000 0.00 0.00 39.09 1.40
99 100 9.362151 AGAAGTTAATGAATAAAGGTTTGGTCA 57.638 29.630 0.00 0.00 0.00 4.02
107 108 8.974060 TGAATAAAGGTTTGGTCATACTATCC 57.026 34.615 0.00 0.00 0.00 2.59
108 109 8.553153 TGAATAAAGGTTTGGTCATACTATCCA 58.447 33.333 0.00 0.00 0.00 3.41
109 110 9.403583 GAATAAAGGTTTGGTCATACTATCCAA 57.596 33.333 0.00 0.00 39.12 3.53
110 111 9.936329 AATAAAGGTTTGGTCATACTATCCAAT 57.064 29.630 0.00 0.00 40.28 3.16
111 112 9.936329 ATAAAGGTTTGGTCATACTATCCAATT 57.064 29.630 0.00 0.00 40.28 2.32
112 113 7.881775 AAGGTTTGGTCATACTATCCAATTC 57.118 36.000 0.00 0.00 40.28 2.17
113 114 6.969043 AGGTTTGGTCATACTATCCAATTCA 58.031 36.000 0.00 0.00 40.28 2.57
114 115 7.586349 AGGTTTGGTCATACTATCCAATTCAT 58.414 34.615 0.00 0.00 40.28 2.57
115 116 8.061304 AGGTTTGGTCATACTATCCAATTCATT 58.939 33.333 0.00 0.00 40.28 2.57
116 117 8.695456 GGTTTGGTCATACTATCCAATTCATTT 58.305 33.333 0.00 0.00 40.28 2.32
125 126 7.530426 ACTATCCAATTCATTTAAGATGCCC 57.470 36.000 0.00 0.00 0.00 5.36
126 127 7.068702 ACTATCCAATTCATTTAAGATGCCCA 58.931 34.615 0.00 0.00 0.00 5.36
127 128 6.811634 ATCCAATTCATTTAAGATGCCCAA 57.188 33.333 0.00 0.00 0.00 4.12
128 129 5.976458 TCCAATTCATTTAAGATGCCCAAC 58.024 37.500 0.00 0.00 0.00 3.77
129 130 5.104982 TCCAATTCATTTAAGATGCCCAACC 60.105 40.000 0.00 0.00 0.00 3.77
130 131 5.338219 CCAATTCATTTAAGATGCCCAACCA 60.338 40.000 0.00 0.00 0.00 3.67
131 132 4.799564 TTCATTTAAGATGCCCAACCAC 57.200 40.909 0.00 0.00 0.00 4.16
132 133 3.096092 TCATTTAAGATGCCCAACCACC 58.904 45.455 0.00 0.00 0.00 4.61
133 134 2.685106 TTTAAGATGCCCAACCACCA 57.315 45.000 0.00 0.00 0.00 4.17
134 135 2.685106 TTAAGATGCCCAACCACCAA 57.315 45.000 0.00 0.00 0.00 3.67
135 136 1.917872 TAAGATGCCCAACCACCAAC 58.082 50.000 0.00 0.00 0.00 3.77
136 137 0.188342 AAGATGCCCAACCACCAACT 59.812 50.000 0.00 0.00 0.00 3.16
137 138 1.072266 AGATGCCCAACCACCAACTA 58.928 50.000 0.00 0.00 0.00 2.24
138 139 1.427368 AGATGCCCAACCACCAACTAA 59.573 47.619 0.00 0.00 0.00 2.24
139 140 2.042979 AGATGCCCAACCACCAACTAAT 59.957 45.455 0.00 0.00 0.00 1.73
140 141 3.268334 AGATGCCCAACCACCAACTAATA 59.732 43.478 0.00 0.00 0.00 0.98
141 142 3.748645 TGCCCAACCACCAACTAATAT 57.251 42.857 0.00 0.00 0.00 1.28
142 143 4.864483 TGCCCAACCACCAACTAATATA 57.136 40.909 0.00 0.00 0.00 0.86
143 144 4.528920 TGCCCAACCACCAACTAATATAC 58.471 43.478 0.00 0.00 0.00 1.47
144 145 4.018324 TGCCCAACCACCAACTAATATACA 60.018 41.667 0.00 0.00 0.00 2.29
145 146 4.337274 GCCCAACCACCAACTAATATACAC 59.663 45.833 0.00 0.00 0.00 2.90
146 147 4.573201 CCCAACCACCAACTAATATACACG 59.427 45.833 0.00 0.00 0.00 4.49
147 148 5.180271 CCAACCACCAACTAATATACACGT 58.820 41.667 0.00 0.00 0.00 4.49
148 149 6.339730 CCAACCACCAACTAATATACACGTA 58.660 40.000 0.00 0.00 0.00 3.57
149 150 6.987992 CCAACCACCAACTAATATACACGTAT 59.012 38.462 0.00 0.00 0.00 3.06
150 151 7.496591 CCAACCACCAACTAATATACACGTATT 59.503 37.037 0.00 0.00 0.00 1.89
151 152 8.885722 CAACCACCAACTAATATACACGTATTT 58.114 33.333 0.00 0.00 0.00 1.40
152 153 8.428186 ACCACCAACTAATATACACGTATTTG 57.572 34.615 0.00 0.00 0.00 2.32
153 154 8.042515 ACCACCAACTAATATACACGTATTTGT 58.957 33.333 0.00 0.00 33.50 2.83
154 155 8.885722 CCACCAACTAATATACACGTATTTGTT 58.114 33.333 3.71 3.71 39.13 2.83
155 156 9.697250 CACCAACTAATATACACGTATTTGTTG 57.303 33.333 19.96 19.96 45.98 3.33
167 168 8.611654 ACACGTATTTGTTGAATTAACCTACT 57.388 30.769 0.00 0.00 38.55 2.57
168 169 8.500773 ACACGTATTTGTTGAATTAACCTACTG 58.499 33.333 0.00 0.00 38.55 2.74
169 170 8.500773 CACGTATTTGTTGAATTAACCTACTGT 58.499 33.333 0.00 0.00 38.55 3.55
170 171 8.500773 ACGTATTTGTTGAATTAACCTACTGTG 58.499 33.333 0.00 0.00 38.55 3.66
171 172 7.960738 CGTATTTGTTGAATTAACCTACTGTGG 59.039 37.037 0.00 0.00 38.55 4.17
172 173 7.833285 ATTTGTTGAATTAACCTACTGTGGT 57.167 32.000 0.00 0.00 43.11 4.16
173 174 6.627395 TTGTTGAATTAACCTACTGTGGTG 57.373 37.500 3.27 0.00 40.73 4.17
174 175 5.686753 TGTTGAATTAACCTACTGTGGTGT 58.313 37.500 3.27 0.00 40.73 4.16
175 176 6.123651 TGTTGAATTAACCTACTGTGGTGTT 58.876 36.000 3.27 3.76 40.73 3.32
176 177 6.261381 TGTTGAATTAACCTACTGTGGTGTTC 59.739 38.462 3.27 8.20 40.73 3.18
177 178 5.931294 TGAATTAACCTACTGTGGTGTTCA 58.069 37.500 13.97 13.97 40.73 3.18
178 179 6.539173 TGAATTAACCTACTGTGGTGTTCAT 58.461 36.000 13.97 4.88 40.73 2.57
179 180 6.429692 TGAATTAACCTACTGTGGTGTTCATG 59.570 38.462 13.97 0.00 40.73 3.07
180 181 3.857157 AACCTACTGTGGTGTTCATGT 57.143 42.857 0.00 0.00 40.73 3.21
181 182 4.967084 AACCTACTGTGGTGTTCATGTA 57.033 40.909 0.00 0.00 40.73 2.29
182 183 5.499004 AACCTACTGTGGTGTTCATGTAT 57.501 39.130 0.00 0.00 40.73 2.29
183 184 5.499004 ACCTACTGTGGTGTTCATGTATT 57.501 39.130 0.00 0.00 39.17 1.89
184 185 5.488341 ACCTACTGTGGTGTTCATGTATTC 58.512 41.667 0.00 0.00 39.17 1.75
185 186 5.012664 ACCTACTGTGGTGTTCATGTATTCA 59.987 40.000 0.00 0.00 39.17 2.57
186 187 6.115446 CCTACTGTGGTGTTCATGTATTCAT 58.885 40.000 0.00 0.00 34.21 2.57
187 188 6.599244 CCTACTGTGGTGTTCATGTATTCATT 59.401 38.462 0.00 0.00 31.15 2.57
188 189 6.899393 ACTGTGGTGTTCATGTATTCATTT 57.101 33.333 0.00 0.00 31.15 2.32
189 190 7.994425 ACTGTGGTGTTCATGTATTCATTTA 57.006 32.000 0.00 0.00 31.15 1.40
190 191 8.402798 ACTGTGGTGTTCATGTATTCATTTAA 57.597 30.769 0.00 0.00 31.15 1.52
191 192 9.023962 ACTGTGGTGTTCATGTATTCATTTAAT 57.976 29.630 0.00 0.00 31.15 1.40
192 193 9.292846 CTGTGGTGTTCATGTATTCATTTAATG 57.707 33.333 0.00 0.00 31.15 1.90
193 194 9.018582 TGTGGTGTTCATGTATTCATTTAATGA 57.981 29.630 3.20 3.20 37.55 2.57
194 195 9.289303 GTGGTGTTCATGTATTCATTTAATGAC 57.711 33.333 7.19 0.00 39.39 3.06
195 196 9.241919 TGGTGTTCATGTATTCATTTAATGACT 57.758 29.630 7.19 5.11 39.39 3.41
222 223 4.691860 AAGTGCTAATCTCACAACATGC 57.308 40.909 0.00 0.00 36.93 4.06
223 224 3.678289 AGTGCTAATCTCACAACATGCA 58.322 40.909 0.00 0.00 36.93 3.96
224 225 4.267536 AGTGCTAATCTCACAACATGCAT 58.732 39.130 0.00 0.00 36.93 3.96
225 226 4.095932 AGTGCTAATCTCACAACATGCATG 59.904 41.667 25.09 25.09 36.93 4.06
226 227 3.379057 TGCTAATCTCACAACATGCATGG 59.621 43.478 29.41 15.68 0.00 3.66
227 228 3.628942 GCTAATCTCACAACATGCATGGA 59.371 43.478 29.41 16.34 0.00 3.41
228 229 4.497006 GCTAATCTCACAACATGCATGGAC 60.497 45.833 29.41 1.96 0.00 4.02
229 230 2.865119 TCTCACAACATGCATGGACT 57.135 45.000 29.41 11.64 0.00 3.85
230 231 2.429478 TCTCACAACATGCATGGACTG 58.571 47.619 29.41 23.31 0.00 3.51
238 239 4.547859 GCATGGACTGCCGAGATT 57.452 55.556 0.00 0.00 45.66 2.40
239 240 2.785868 GCATGGACTGCCGAGATTT 58.214 52.632 0.00 0.00 45.66 2.17
240 241 0.659957 GCATGGACTGCCGAGATTTC 59.340 55.000 0.00 0.00 45.66 2.17
241 242 2.013563 GCATGGACTGCCGAGATTTCA 61.014 52.381 0.00 0.00 45.66 2.69
242 243 2.569059 CATGGACTGCCGAGATTTCAT 58.431 47.619 0.00 0.00 36.79 2.57
243 244 2.315925 TGGACTGCCGAGATTTCATC 57.684 50.000 0.00 0.00 36.79 2.92
244 245 1.134401 TGGACTGCCGAGATTTCATCC 60.134 52.381 0.00 0.00 36.79 3.51
245 246 1.139853 GGACTGCCGAGATTTCATCCT 59.860 52.381 0.00 0.00 0.00 3.24
246 247 2.478831 GACTGCCGAGATTTCATCCTC 58.521 52.381 0.00 0.00 0.00 3.71
250 251 3.258225 CGAGATTTCATCCTCGCGT 57.742 52.632 5.77 0.00 44.35 6.01
251 252 0.848942 CGAGATTTCATCCTCGCGTG 59.151 55.000 5.77 2.75 44.35 5.34
252 253 1.212616 GAGATTTCATCCTCGCGTGG 58.787 55.000 20.92 20.92 0.00 4.94
253 254 0.811616 AGATTTCATCCTCGCGTGGC 60.812 55.000 22.04 6.49 0.00 5.01
254 255 1.078497 ATTTCATCCTCGCGTGGCA 60.078 52.632 22.04 11.50 0.00 4.92
255 256 1.369091 ATTTCATCCTCGCGTGGCAC 61.369 55.000 22.04 7.79 0.00 5.01
256 257 3.950794 TTCATCCTCGCGTGGCACC 62.951 63.158 22.04 4.00 0.00 5.01
257 258 4.758251 CATCCTCGCGTGGCACCA 62.758 66.667 22.04 5.54 0.00 4.17
258 259 3.785859 ATCCTCGCGTGGCACCAT 61.786 61.111 22.04 7.77 0.00 3.55
259 260 4.758251 TCCTCGCGTGGCACCATG 62.758 66.667 22.04 4.43 36.13 3.66
261 262 3.490759 CTCGCGTGGCACCATGTC 61.491 66.667 12.86 2.65 35.52 3.06
265 266 2.282110 CGTGGCACCATGTCCCAA 60.282 61.111 12.86 0.00 0.00 4.12
266 267 1.900981 CGTGGCACCATGTCCCAAA 60.901 57.895 12.86 0.00 0.00 3.28
267 268 1.459455 CGTGGCACCATGTCCCAAAA 61.459 55.000 12.86 0.00 0.00 2.44
268 269 0.755686 GTGGCACCATGTCCCAAAAA 59.244 50.000 6.29 0.00 0.00 1.94
269 270 1.347378 GTGGCACCATGTCCCAAAAAT 59.653 47.619 6.29 0.00 0.00 1.82
270 271 1.622811 TGGCACCATGTCCCAAAAATC 59.377 47.619 0.00 0.00 0.00 2.17
271 272 1.066215 GGCACCATGTCCCAAAAATCC 60.066 52.381 0.00 0.00 0.00 3.01
272 273 1.404047 GCACCATGTCCCAAAAATCCG 60.404 52.381 0.00 0.00 0.00 4.18
273 274 0.894835 ACCATGTCCCAAAAATCCGC 59.105 50.000 0.00 0.00 0.00 5.54
274 275 0.179140 CCATGTCCCAAAAATCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
275 276 0.525761 CATGTCCCAAAAATCCGCGT 59.474 50.000 4.92 0.00 0.00 6.01
276 277 0.808755 ATGTCCCAAAAATCCGCGTC 59.191 50.000 4.92 0.00 0.00 5.19
277 278 1.133869 GTCCCAAAAATCCGCGTCG 59.866 57.895 4.92 0.00 0.00 5.12
278 279 1.301874 TCCCAAAAATCCGCGTCGT 60.302 52.632 4.92 0.00 0.00 4.34
279 280 0.037512 TCCCAAAAATCCGCGTCGTA 60.038 50.000 4.92 0.00 0.00 3.43
283 284 2.348218 CCAAAAATCCGCGTCGTATAGC 60.348 50.000 4.92 0.00 0.00 2.97
320 321 6.045072 ACAACATCCATTGCAATTTCATCT 57.955 33.333 9.83 0.00 32.47 2.90
321 322 6.103997 ACAACATCCATTGCAATTTCATCTC 58.896 36.000 9.83 0.00 32.47 2.75
377 378 2.663196 GCTACGTCAGCCCCAAGT 59.337 61.111 0.00 0.00 45.23 3.16
378 379 1.895238 GCTACGTCAGCCCCAAGTA 59.105 57.895 0.00 0.00 45.23 2.24
401 402 4.227134 CGCCACTAGCTCCGCCAT 62.227 66.667 0.00 0.00 40.39 4.40
408 409 0.250209 CTAGCTCCGCCATTGCTGAT 60.250 55.000 0.00 0.00 37.62 2.90
430 431 6.645827 TGATGGTCATGTGCAATAACAAAAAG 59.354 34.615 0.00 0.00 32.81 2.27
431 432 5.911752 TGGTCATGTGCAATAACAAAAAGT 58.088 33.333 0.00 0.00 32.81 2.66
447 448 0.681175 AAGTTGACCAAAGCATGCCC 59.319 50.000 15.66 0.00 0.00 5.36
458 459 4.999950 CCAAAGCATGCCCTCTAATAGTAG 59.000 45.833 15.66 0.00 0.00 2.57
467 468 9.080097 CATGCCCTCTAATAGTAGTACTACTTT 57.920 37.037 34.30 27.32 43.35 2.66
480 481 6.129053 AGTACTACTTTCGTCCGGAATTAG 57.871 41.667 5.23 4.01 33.85 1.73
512 513 3.965888 GGATGTATCCAGATGGGCC 57.034 57.895 6.03 0.00 46.38 5.80
513 514 1.067295 GGATGTATCCAGATGGGCCA 58.933 55.000 9.61 9.61 46.38 5.36
514 515 1.425066 GGATGTATCCAGATGGGCCAA 59.575 52.381 11.89 0.00 46.38 4.52
517 518 4.521146 GATGTATCCAGATGGGCCAATAG 58.479 47.826 11.89 2.43 36.21 1.73
518 519 3.326521 TGTATCCAGATGGGCCAATAGT 58.673 45.455 11.89 0.00 36.21 2.12
519 520 4.498493 TGTATCCAGATGGGCCAATAGTA 58.502 43.478 11.89 0.00 36.21 1.82
520 521 4.286032 TGTATCCAGATGGGCCAATAGTAC 59.714 45.833 11.89 9.95 36.21 2.73
521 522 3.060479 TCCAGATGGGCCAATAGTACT 57.940 47.619 11.89 0.00 36.21 2.73
522 523 4.207698 TCCAGATGGGCCAATAGTACTA 57.792 45.455 11.89 4.77 36.21 1.82
523 524 3.901844 TCCAGATGGGCCAATAGTACTAC 59.098 47.826 11.89 0.00 36.21 2.73
524 525 3.904339 CCAGATGGGCCAATAGTACTACT 59.096 47.826 11.89 0.00 0.00 2.57
525 526 5.084519 CCAGATGGGCCAATAGTACTACTA 58.915 45.833 11.89 0.00 34.82 1.82
526 527 5.721960 CCAGATGGGCCAATAGTACTACTAT 59.278 44.000 11.89 3.21 42.86 2.12
527 528 6.127310 CCAGATGGGCCAATAGTACTACTATC 60.127 46.154 11.89 5.36 40.32 2.08
528 529 5.652891 AGATGGGCCAATAGTACTACTATCG 59.347 44.000 11.89 0.00 40.32 2.92
531 532 4.157472 GGGCCAATAGTACTACTATCGTCC 59.843 50.000 4.39 9.25 40.32 4.79
533 534 4.142730 GCCAATAGTACTACTATCGTCCGG 60.143 50.000 4.31 0.00 40.32 5.14
534 535 5.240891 CCAATAGTACTACTATCGTCCGGA 58.759 45.833 4.31 0.00 40.32 5.14
535 536 5.702670 CCAATAGTACTACTATCGTCCGGAA 59.297 44.000 5.23 0.00 40.32 4.30
536 537 6.373774 CCAATAGTACTACTATCGTCCGGAAT 59.626 42.308 5.23 0.00 40.32 3.01
537 538 7.094463 CCAATAGTACTACTATCGTCCGGAATT 60.094 40.741 5.23 0.00 40.32 2.17
538 539 8.939929 CAATAGTACTACTATCGTCCGGAATTA 58.060 37.037 5.23 0.00 40.32 1.40
539 540 8.715191 ATAGTACTACTATCGTCCGGAATTAG 57.285 38.462 5.23 10.31 36.76 1.73
540 541 6.529220 AGTACTACTATCGTCCGGAATTAGT 58.471 40.000 20.01 20.01 0.00 2.24
541 542 6.995091 AGTACTACTATCGTCCGGAATTAGTT 59.005 38.462 20.87 11.11 0.00 2.24
542 543 6.069684 ACTACTATCGTCCGGAATTAGTTG 57.930 41.667 20.87 20.30 0.00 3.16
543 544 5.824624 ACTACTATCGTCCGGAATTAGTTGA 59.175 40.000 24.39 11.85 0.00 3.18
544 545 4.929781 ACTATCGTCCGGAATTAGTTGAC 58.070 43.478 5.23 0.00 0.00 3.18
546 547 0.643820 CGTCCGGAATTAGTTGACGC 59.356 55.000 5.23 0.00 41.71 5.19
547 548 1.734707 CGTCCGGAATTAGTTGACGCT 60.735 52.381 5.23 0.00 41.71 5.07
548 549 2.478370 CGTCCGGAATTAGTTGACGCTA 60.478 50.000 5.23 0.00 41.71 4.26
549 550 3.514645 GTCCGGAATTAGTTGACGCTAA 58.485 45.455 5.23 0.00 35.68 3.09
550 551 3.928375 GTCCGGAATTAGTTGACGCTAAA 59.072 43.478 5.23 0.00 34.98 1.85
551 552 4.389687 GTCCGGAATTAGTTGACGCTAAAA 59.610 41.667 5.23 0.00 34.98 1.52
552 553 5.064325 GTCCGGAATTAGTTGACGCTAAAAT 59.936 40.000 5.23 0.00 34.98 1.82
553 554 6.256321 GTCCGGAATTAGTTGACGCTAAAATA 59.744 38.462 5.23 0.00 34.98 1.40
554 555 6.477688 TCCGGAATTAGTTGACGCTAAAATAG 59.522 38.462 0.00 0.00 34.98 1.73
555 556 6.477688 CCGGAATTAGTTGACGCTAAAATAGA 59.522 38.462 0.00 0.00 34.98 1.98
556 557 7.170998 CCGGAATTAGTTGACGCTAAAATAGAT 59.829 37.037 0.00 0.00 34.98 1.98
557 558 8.004344 CGGAATTAGTTGACGCTAAAATAGATG 58.996 37.037 0.00 0.00 34.98 2.90
558 559 8.827677 GGAATTAGTTGACGCTAAAATAGATGT 58.172 33.333 0.00 0.00 34.98 3.06
564 565 9.900710 AGTTGACGCTAAAATAGATGTATCTAG 57.099 33.333 7.57 0.00 42.20 2.43
565 566 9.894783 GTTGACGCTAAAATAGATGTATCTAGA 57.105 33.333 7.57 0.00 42.20 2.43
568 569 9.509855 GACGCTAAAATAGATGTATCTAGATGG 57.490 37.037 15.79 0.98 42.20 3.51
569 570 8.470805 ACGCTAAAATAGATGTATCTAGATGGG 58.529 37.037 15.79 4.70 42.20 4.00
570 571 7.923344 CGCTAAAATAGATGTATCTAGATGGGG 59.077 40.741 15.79 3.76 42.20 4.96
571 572 7.713073 GCTAAAATAGATGTATCTAGATGGGGC 59.287 40.741 15.79 2.81 42.20 5.80
572 573 7.574021 AAAATAGATGTATCTAGATGGGGCA 57.426 36.000 15.79 9.09 42.20 5.36
573 574 6.552445 AATAGATGTATCTAGATGGGGCAC 57.448 41.667 15.79 5.61 42.20 5.01
574 575 3.861846 AGATGTATCTAGATGGGGCACA 58.138 45.455 15.79 11.22 34.85 4.57
575 576 3.837146 AGATGTATCTAGATGGGGCACAG 59.163 47.826 15.79 0.00 34.85 3.66
576 577 2.329267 TGTATCTAGATGGGGCACAGG 58.671 52.381 15.79 0.00 0.00 4.00
577 578 2.090775 TGTATCTAGATGGGGCACAGGA 60.091 50.000 15.79 0.00 0.00 3.86
580 581 1.062198 TCTAGATGGGGCACAGGATGA 60.062 52.381 0.00 0.00 39.69 2.92
582 583 0.549950 AGATGGGGCACAGGATGAAG 59.450 55.000 0.00 0.00 39.69 3.02
588 589 0.393537 GGCACAGGATGAAGGGAGTG 60.394 60.000 0.00 0.00 39.69 3.51
592 593 3.388024 GCACAGGATGAAGGGAGTGTATA 59.612 47.826 0.00 0.00 39.69 1.47
697 710 5.453057 GCAGAAGAAGAGAGGAAGCATATGA 60.453 44.000 6.97 0.00 0.00 2.15
737 758 6.603201 CCACTTGATCACCAACATAATTAGGT 59.397 38.462 0.00 0.00 33.91 3.08
871 906 1.674359 CACCAACACAGCACCTACAA 58.326 50.000 0.00 0.00 0.00 2.41
873 908 1.211949 ACCAACACAGCACCTACAACT 59.788 47.619 0.00 0.00 0.00 3.16
874 909 2.436542 ACCAACACAGCACCTACAACTA 59.563 45.455 0.00 0.00 0.00 2.24
875 910 2.806244 CCAACACAGCACCTACAACTAC 59.194 50.000 0.00 0.00 0.00 2.73
876 911 3.462982 CAACACAGCACCTACAACTACA 58.537 45.455 0.00 0.00 0.00 2.74
878 913 3.728845 ACACAGCACCTACAACTACAAG 58.271 45.455 0.00 0.00 0.00 3.16
879 914 2.480419 CACAGCACCTACAACTACAAGC 59.520 50.000 0.00 0.00 0.00 4.01
880 915 2.104111 ACAGCACCTACAACTACAAGCA 59.896 45.455 0.00 0.00 0.00 3.91
881 916 2.480419 CAGCACCTACAACTACAAGCAC 59.520 50.000 0.00 0.00 0.00 4.40
989 1026 0.321671 AGCTGCCTTCTTCGTAGCAA 59.678 50.000 0.00 0.00 36.87 3.91
1003 1040 6.653320 TCTTCGTAGCAATTTCCAGTTAATGT 59.347 34.615 0.00 0.00 0.00 2.71
1641 1678 3.222855 ATCTCCCTCCTCAGCGCG 61.223 66.667 0.00 0.00 0.00 6.86
2007 2050 6.888632 TCATAATATAAGTACTCCCTCCGTCC 59.111 42.308 0.00 0.00 0.00 4.79
2015 2058 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2019 2062 1.743394 CCTCCGTCCCAAAATAAGTGC 59.257 52.381 0.00 0.00 0.00 4.40
2021 2064 1.353022 TCCGTCCCAAAATAAGTGCCT 59.647 47.619 0.00 0.00 0.00 4.75
2022 2065 2.167662 CCGTCCCAAAATAAGTGCCTT 58.832 47.619 0.00 0.00 0.00 4.35
2023 2066 2.094752 CCGTCCCAAAATAAGTGCCTTG 60.095 50.000 0.00 0.00 0.00 3.61
2024 2067 2.817258 CGTCCCAAAATAAGTGCCTTGA 59.183 45.455 0.00 0.00 0.00 3.02
2025 2068 3.119849 CGTCCCAAAATAAGTGCCTTGAG 60.120 47.826 0.00 0.00 0.00 3.02
2026 2069 2.825532 TCCCAAAATAAGTGCCTTGAGC 59.174 45.455 0.00 0.00 44.14 4.26
2027 2070 2.827921 CCCAAAATAAGTGCCTTGAGCT 59.172 45.455 0.00 0.00 44.23 4.09
2028 2071 3.259123 CCCAAAATAAGTGCCTTGAGCTT 59.741 43.478 0.00 0.00 44.23 3.74
2029 2072 4.462483 CCCAAAATAAGTGCCTTGAGCTTA 59.538 41.667 0.00 0.00 44.23 3.09
2030 2073 5.393461 CCCAAAATAAGTGCCTTGAGCTTAG 60.393 44.000 0.00 0.00 44.23 2.18
2031 2074 5.183904 CCAAAATAAGTGCCTTGAGCTTAGT 59.816 40.000 0.00 0.00 44.23 2.24
2032 2075 6.374333 CCAAAATAAGTGCCTTGAGCTTAGTA 59.626 38.462 0.00 0.00 44.23 1.82
2033 2076 7.067494 CCAAAATAAGTGCCTTGAGCTTAGTAT 59.933 37.037 0.00 0.00 44.23 2.12
2034 2077 9.109393 CAAAATAAGTGCCTTGAGCTTAGTATA 57.891 33.333 0.00 0.00 44.23 1.47
2035 2078 9.681062 AAAATAAGTGCCTTGAGCTTAGTATAA 57.319 29.630 0.00 0.00 44.23 0.98
2036 2079 9.681062 AAATAAGTGCCTTGAGCTTAGTATAAA 57.319 29.630 0.00 0.00 44.23 1.40
2037 2080 9.853177 AATAAGTGCCTTGAGCTTAGTATAAAT 57.147 29.630 0.00 0.00 44.23 1.40
2038 2081 9.853177 ATAAGTGCCTTGAGCTTAGTATAAATT 57.147 29.630 0.00 0.00 44.23 1.82
2039 2082 8.581253 AAGTGCCTTGAGCTTAGTATAAATTT 57.419 30.769 0.00 0.00 44.23 1.82
2040 2083 7.989826 AGTGCCTTGAGCTTAGTATAAATTTG 58.010 34.615 0.00 0.00 44.23 2.32
2041 2084 7.611855 AGTGCCTTGAGCTTAGTATAAATTTGT 59.388 33.333 0.00 0.00 44.23 2.83
2042 2085 8.889717 GTGCCTTGAGCTTAGTATAAATTTGTA 58.110 33.333 0.00 0.00 44.23 2.41
2043 2086 9.627123 TGCCTTGAGCTTAGTATAAATTTGTAT 57.373 29.630 0.00 0.00 44.23 2.29
2064 2107 9.856488 TTGTATTAGAGCTAGTACAAAGTTGAG 57.144 33.333 17.74 0.00 41.81 3.02
2065 2108 9.239551 TGTATTAGAGCTAGTACAAAGTTGAGA 57.760 33.333 9.55 0.00 36.00 3.27
2066 2109 9.505995 GTATTAGAGCTAGTACAAAGTTGAGAC 57.494 37.037 0.00 0.00 31.20 3.36
2067 2110 7.520451 TTAGAGCTAGTACAAAGTTGAGACA 57.480 36.000 0.00 0.00 0.00 3.41
2068 2111 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
2069 2112 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
2070 2113 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
2071 2114 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
2072 2115 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2073 2116 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2074 2117 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2077 2120 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
2078 2121 9.651718 GTACAAAGTTGAGACACTTATTTTGAG 57.348 33.333 0.00 0.00 35.87 3.02
2079 2122 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
2091 2134 0.037975 TTTTGAGACGGCGGGAGTAC 60.038 55.000 13.24 0.00 0.00 2.73
2188 2233 3.953874 ACATGTATCTGTCGTCTCTCG 57.046 47.619 0.00 0.00 41.41 4.04
2190 2235 1.664873 TGTATCTGTCGTCTCTCGGG 58.335 55.000 0.00 0.00 40.32 5.14
2227 2272 3.795688 ATTGGCTTGGTCCGATGATAT 57.204 42.857 0.00 0.00 0.00 1.63
2253 2298 1.274447 CAGATGCATGCCTAGATCCGA 59.726 52.381 16.68 0.00 0.00 4.55
2284 2329 2.325761 CGCCGATATACTTAGTGTGGC 58.674 52.381 0.00 0.00 37.89 5.01
2368 2413 2.604462 ACAAGTTCGACGTTGTACAACC 59.396 45.455 28.43 16.74 38.03 3.77
2438 2483 9.159254 TGCCTCATATATTAAAGAAGAGGAGAA 57.841 33.333 14.27 0.71 42.87 2.87
2458 2503 8.515414 AGGAGAAAGAGTTTGTTATAACATTGC 58.485 33.333 18.69 8.65 38.95 3.56
2459 2504 8.296713 GGAGAAAGAGTTTGTTATAACATTGCA 58.703 33.333 18.69 1.36 38.95 4.08
2461 2506 9.683069 AGAAAGAGTTTGTTATAACATTGCAAG 57.317 29.630 18.69 0.00 38.95 4.01
2462 2507 9.677567 GAAAGAGTTTGTTATAACATTGCAAGA 57.322 29.630 18.69 0.00 38.95 3.02
2476 2521 8.524870 AACATTGCAAGAATTTTGAGTCATAC 57.475 30.769 4.94 0.00 0.00 2.39
2488 2533 8.684973 ATTTTGAGTCATACAGTCGTAGTTAC 57.315 34.615 0.00 0.00 0.00 2.50
2636 2682 7.281098 TGCATATTGCCCATGTTTCAAAATAT 58.719 30.769 0.00 0.00 44.23 1.28
2645 2691 6.201517 CCATGTTTCAAAATATAGCGACCAG 58.798 40.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.387202 TTGGTTGTGAAATGCCGGTG 59.613 50.000 1.90 0.00 0.00 4.94
1 2 0.387565 GTTGGTTGTGAAATGCCGGT 59.612 50.000 1.90 0.00 0.00 5.28
2 3 0.319469 GGTTGGTTGTGAAATGCCGG 60.319 55.000 0.00 0.00 0.00 6.13
3 4 0.387202 TGGTTGGTTGTGAAATGCCG 59.613 50.000 0.00 0.00 0.00 5.69
4 5 2.299867 AGATGGTTGGTTGTGAAATGCC 59.700 45.455 0.00 0.00 0.00 4.40
5 6 3.665745 AGATGGTTGGTTGTGAAATGC 57.334 42.857 0.00 0.00 0.00 3.56
6 7 7.118101 CCATTTAAGATGGTTGGTTGTGAAATG 59.882 37.037 7.94 0.00 34.56 2.32
7 8 7.160726 CCATTTAAGATGGTTGGTTGTGAAAT 58.839 34.615 7.94 0.00 34.56 2.17
8 9 6.520272 CCATTTAAGATGGTTGGTTGTGAAA 58.480 36.000 7.94 0.00 34.56 2.69
9 10 6.095432 CCATTTAAGATGGTTGGTTGTGAA 57.905 37.500 7.94 0.00 34.56 3.18
10 11 5.720371 CCATTTAAGATGGTTGGTTGTGA 57.280 39.130 7.94 0.00 34.56 3.58
20 21 7.872881 CATCTTGATGAGACCATTTAAGATGG 58.127 38.462 22.11 12.43 45.82 3.51
22 23 7.228906 CAGCATCTTGATGAGACCATTTAAGAT 59.771 37.037 14.09 0.00 41.87 2.40
23 24 6.541278 CAGCATCTTGATGAGACCATTTAAGA 59.459 38.462 14.09 0.00 35.45 2.10
24 25 6.726230 CAGCATCTTGATGAGACCATTTAAG 58.274 40.000 14.09 0.00 35.45 1.85
25 26 5.066893 GCAGCATCTTGATGAGACCATTTAA 59.933 40.000 14.09 0.00 35.45 1.52
26 27 4.577693 GCAGCATCTTGATGAGACCATTTA 59.422 41.667 14.09 0.00 35.45 1.40
27 28 3.380637 GCAGCATCTTGATGAGACCATTT 59.619 43.478 14.09 0.00 35.45 2.32
28 29 2.950309 GCAGCATCTTGATGAGACCATT 59.050 45.455 14.09 0.00 35.45 3.16
29 30 2.573369 GCAGCATCTTGATGAGACCAT 58.427 47.619 14.09 0.00 35.45 3.55
30 31 1.741394 CGCAGCATCTTGATGAGACCA 60.741 52.381 14.09 0.00 35.61 4.02
31 32 0.935898 CGCAGCATCTTGATGAGACC 59.064 55.000 14.09 0.00 35.61 3.85
32 33 1.592081 GACGCAGCATCTTGATGAGAC 59.408 52.381 14.09 1.93 35.61 3.36
33 34 1.479730 AGACGCAGCATCTTGATGAGA 59.520 47.619 14.09 0.00 35.61 3.27
34 35 1.859703 GAGACGCAGCATCTTGATGAG 59.140 52.381 14.09 6.90 39.43 2.90
35 36 1.472201 GGAGACGCAGCATCTTGATGA 60.472 52.381 14.09 0.00 35.45 2.92
36 37 0.935898 GGAGACGCAGCATCTTGATG 59.064 55.000 6.27 6.27 36.74 3.07
37 38 0.179062 GGGAGACGCAGCATCTTGAT 60.179 55.000 0.00 0.00 0.00 2.57
38 39 1.219124 GGGAGACGCAGCATCTTGA 59.781 57.895 0.00 0.00 0.00 3.02
39 40 1.817099 GGGGAGACGCAGCATCTTG 60.817 63.158 0.00 0.00 43.99 3.02
40 41 2.586792 GGGGAGACGCAGCATCTT 59.413 61.111 0.00 0.00 43.99 2.40
50 51 3.706373 TTGCTCGGCTGGGGAGAC 61.706 66.667 0.00 0.00 33.27 3.36
51 52 3.706373 GTTGCTCGGCTGGGGAGA 61.706 66.667 0.00 0.00 33.27 3.71
52 53 2.826777 AATGTTGCTCGGCTGGGGAG 62.827 60.000 0.00 0.00 34.62 4.30
53 54 1.558167 TAATGTTGCTCGGCTGGGGA 61.558 55.000 0.00 0.00 0.00 4.81
54 55 0.679640 TTAATGTTGCTCGGCTGGGG 60.680 55.000 0.00 0.00 0.00 4.96
55 56 0.734889 CTTAATGTTGCTCGGCTGGG 59.265 55.000 0.00 0.00 0.00 4.45
56 57 1.737838 TCTTAATGTTGCTCGGCTGG 58.262 50.000 0.00 0.00 0.00 4.85
57 58 2.744202 ACTTCTTAATGTTGCTCGGCTG 59.256 45.455 0.00 0.00 0.00 4.85
58 59 3.059352 ACTTCTTAATGTTGCTCGGCT 57.941 42.857 0.00 0.00 0.00 5.52
59 60 3.831715 AACTTCTTAATGTTGCTCGGC 57.168 42.857 0.00 0.00 0.00 5.54
60 61 7.072177 TCATTAACTTCTTAATGTTGCTCGG 57.928 36.000 11.22 0.00 45.23 4.63
73 74 9.362151 TGACCAAACCTTTATTCATTAACTTCT 57.638 29.630 0.00 0.00 0.00 2.85
81 82 9.574516 GGATAGTATGACCAAACCTTTATTCAT 57.425 33.333 0.00 0.00 0.00 2.57
82 83 8.553153 TGGATAGTATGACCAAACCTTTATTCA 58.447 33.333 0.00 0.00 0.00 2.57
83 84 8.974060 TGGATAGTATGACCAAACCTTTATTC 57.026 34.615 0.00 0.00 0.00 1.75
84 85 9.936329 ATTGGATAGTATGACCAAACCTTTATT 57.064 29.630 7.25 0.00 44.91 1.40
85 86 9.936329 AATTGGATAGTATGACCAAACCTTTAT 57.064 29.630 7.25 0.00 44.91 1.40
86 87 9.403583 GAATTGGATAGTATGACCAAACCTTTA 57.596 33.333 7.25 0.00 44.91 1.85
87 88 7.893302 TGAATTGGATAGTATGACCAAACCTTT 59.107 33.333 7.25 0.00 44.91 3.11
88 89 7.410174 TGAATTGGATAGTATGACCAAACCTT 58.590 34.615 7.25 0.00 44.91 3.50
89 90 6.969043 TGAATTGGATAGTATGACCAAACCT 58.031 36.000 7.25 0.00 44.91 3.50
90 91 7.823745 ATGAATTGGATAGTATGACCAAACC 57.176 36.000 7.25 4.10 44.91 3.27
99 100 9.247861 GGGCATCTTAAATGAATTGGATAGTAT 57.752 33.333 0.00 0.00 0.00 2.12
100 101 8.224025 TGGGCATCTTAAATGAATTGGATAGTA 58.776 33.333 0.00 0.00 0.00 1.82
101 102 7.068702 TGGGCATCTTAAATGAATTGGATAGT 58.931 34.615 0.00 0.00 0.00 2.12
102 103 7.528996 TGGGCATCTTAAATGAATTGGATAG 57.471 36.000 0.00 0.00 0.00 2.08
103 104 7.201992 GGTTGGGCATCTTAAATGAATTGGATA 60.202 37.037 0.00 0.00 0.00 2.59
104 105 6.408434 GGTTGGGCATCTTAAATGAATTGGAT 60.408 38.462 0.00 0.00 0.00 3.41
105 106 5.104982 GGTTGGGCATCTTAAATGAATTGGA 60.105 40.000 0.00 0.00 0.00 3.53
106 107 5.118286 GGTTGGGCATCTTAAATGAATTGG 58.882 41.667 0.00 0.00 0.00 3.16
107 108 5.581874 GTGGTTGGGCATCTTAAATGAATTG 59.418 40.000 0.00 0.00 0.00 2.32
108 109 5.338300 GGTGGTTGGGCATCTTAAATGAATT 60.338 40.000 0.00 0.00 0.00 2.17
109 110 4.162131 GGTGGTTGGGCATCTTAAATGAAT 59.838 41.667 0.00 0.00 0.00 2.57
110 111 3.513515 GGTGGTTGGGCATCTTAAATGAA 59.486 43.478 0.00 0.00 0.00 2.57
111 112 3.096092 GGTGGTTGGGCATCTTAAATGA 58.904 45.455 0.00 0.00 0.00 2.57
112 113 2.830923 TGGTGGTTGGGCATCTTAAATG 59.169 45.455 0.00 0.00 0.00 2.32
113 114 3.182887 TGGTGGTTGGGCATCTTAAAT 57.817 42.857 0.00 0.00 0.00 1.40
114 115 2.630580 GTTGGTGGTTGGGCATCTTAAA 59.369 45.455 0.00 0.00 0.00 1.52
115 116 2.158385 AGTTGGTGGTTGGGCATCTTAA 60.158 45.455 0.00 0.00 0.00 1.85
116 117 1.427368 AGTTGGTGGTTGGGCATCTTA 59.573 47.619 0.00 0.00 0.00 2.10
117 118 0.188342 AGTTGGTGGTTGGGCATCTT 59.812 50.000 0.00 0.00 0.00 2.40
118 119 1.072266 TAGTTGGTGGTTGGGCATCT 58.928 50.000 0.00 0.00 0.00 2.90
119 120 1.917872 TTAGTTGGTGGTTGGGCATC 58.082 50.000 0.00 0.00 0.00 3.91
120 121 2.621556 ATTAGTTGGTGGTTGGGCAT 57.378 45.000 0.00 0.00 0.00 4.40
121 122 3.748645 ATATTAGTTGGTGGTTGGGCA 57.251 42.857 0.00 0.00 0.00 5.36
122 123 4.337274 GTGTATATTAGTTGGTGGTTGGGC 59.663 45.833 0.00 0.00 0.00 5.36
123 124 4.573201 CGTGTATATTAGTTGGTGGTTGGG 59.427 45.833 0.00 0.00 0.00 4.12
124 125 5.180271 ACGTGTATATTAGTTGGTGGTTGG 58.820 41.667 0.00 0.00 0.00 3.77
125 126 8.428186 AATACGTGTATATTAGTTGGTGGTTG 57.572 34.615 0.00 0.00 0.00 3.77
126 127 8.885722 CAAATACGTGTATATTAGTTGGTGGTT 58.114 33.333 0.00 0.00 0.00 3.67
127 128 8.042515 ACAAATACGTGTATATTAGTTGGTGGT 58.957 33.333 0.00 0.00 0.00 4.16
128 129 8.428186 ACAAATACGTGTATATTAGTTGGTGG 57.572 34.615 0.00 0.00 0.00 4.61
129 130 9.697250 CAACAAATACGTGTATATTAGTTGGTG 57.303 33.333 0.00 0.00 31.62 4.17
130 131 9.656040 TCAACAAATACGTGTATATTAGTTGGT 57.344 29.630 0.00 6.55 34.88 3.67
141 142 9.709495 AGTAGGTTAATTCAACAAATACGTGTA 57.291 29.630 0.00 0.00 39.04 2.90
142 143 8.500773 CAGTAGGTTAATTCAACAAATACGTGT 58.499 33.333 0.00 0.00 39.04 4.49
143 144 8.500773 ACAGTAGGTTAATTCAACAAATACGTG 58.499 33.333 0.00 0.00 39.04 4.49
144 145 8.500773 CACAGTAGGTTAATTCAACAAATACGT 58.499 33.333 0.00 0.00 39.04 3.57
145 146 7.960738 CCACAGTAGGTTAATTCAACAAATACG 59.039 37.037 0.00 0.00 39.04 3.06
146 147 8.789762 ACCACAGTAGGTTAATTCAACAAATAC 58.210 33.333 0.00 0.00 39.34 1.89
147 148 8.788806 CACCACAGTAGGTTAATTCAACAAATA 58.211 33.333 0.00 0.00 40.77 1.40
148 149 7.286775 ACACCACAGTAGGTTAATTCAACAAAT 59.713 33.333 0.00 0.00 40.77 2.32
149 150 6.603997 ACACCACAGTAGGTTAATTCAACAAA 59.396 34.615 0.00 0.00 40.77 2.83
150 151 6.123651 ACACCACAGTAGGTTAATTCAACAA 58.876 36.000 0.00 0.00 40.77 2.83
151 152 5.686753 ACACCACAGTAGGTTAATTCAACA 58.313 37.500 0.00 0.00 40.77 3.33
152 153 6.261381 TGAACACCACAGTAGGTTAATTCAAC 59.739 38.462 0.00 0.00 40.77 3.18
153 154 6.358178 TGAACACCACAGTAGGTTAATTCAA 58.642 36.000 0.00 0.00 40.77 2.69
154 155 5.931294 TGAACACCACAGTAGGTTAATTCA 58.069 37.500 0.00 0.00 40.77 2.57
155 156 6.430000 ACATGAACACCACAGTAGGTTAATTC 59.570 38.462 0.00 0.00 40.77 2.17
156 157 6.303839 ACATGAACACCACAGTAGGTTAATT 58.696 36.000 0.00 0.00 40.77 1.40
157 158 5.876357 ACATGAACACCACAGTAGGTTAAT 58.124 37.500 0.00 0.00 40.77 1.40
158 159 5.298989 ACATGAACACCACAGTAGGTTAA 57.701 39.130 0.00 0.00 40.77 2.01
159 160 4.967084 ACATGAACACCACAGTAGGTTA 57.033 40.909 0.00 0.00 40.77 2.85
160 161 3.857157 ACATGAACACCACAGTAGGTT 57.143 42.857 0.00 0.00 40.77 3.50
161 162 5.012664 TGAATACATGAACACCACAGTAGGT 59.987 40.000 0.00 0.00 44.48 3.08
162 163 5.487433 TGAATACATGAACACCACAGTAGG 58.513 41.667 0.00 0.00 0.00 3.18
163 164 7.615582 AATGAATACATGAACACCACAGTAG 57.384 36.000 0.00 0.00 36.79 2.57
164 165 7.994425 AAATGAATACATGAACACCACAGTA 57.006 32.000 0.00 0.00 36.79 2.74
165 166 6.899393 AAATGAATACATGAACACCACAGT 57.101 33.333 0.00 0.00 36.79 3.55
166 167 9.292846 CATTAAATGAATACATGAACACCACAG 57.707 33.333 0.00 0.00 36.79 3.66
167 168 9.018582 TCATTAAATGAATACATGAACACCACA 57.981 29.630 0.00 0.00 36.11 4.17
168 169 9.289303 GTCATTAAATGAATACATGAACACCAC 57.711 33.333 0.00 0.00 41.69 4.16
169 170 9.241919 AGTCATTAAATGAATACATGAACACCA 57.758 29.630 0.00 0.00 41.69 4.17
196 197 8.562892 GCATGTTGTGAGATTAGCACTTAATAT 58.437 33.333 0.00 0.00 37.18 1.28
197 198 7.552330 TGCATGTTGTGAGATTAGCACTTAATA 59.448 33.333 0.00 0.00 37.18 0.98
198 199 6.375174 TGCATGTTGTGAGATTAGCACTTAAT 59.625 34.615 0.00 0.00 37.18 1.40
199 200 5.704978 TGCATGTTGTGAGATTAGCACTTAA 59.295 36.000 0.00 0.00 37.18 1.85
200 201 5.244755 TGCATGTTGTGAGATTAGCACTTA 58.755 37.500 0.00 0.00 37.18 2.24
201 202 4.074259 TGCATGTTGTGAGATTAGCACTT 58.926 39.130 0.00 0.00 37.18 3.16
202 203 3.678289 TGCATGTTGTGAGATTAGCACT 58.322 40.909 0.00 0.00 37.18 4.40
203 204 4.348656 CATGCATGTTGTGAGATTAGCAC 58.651 43.478 18.91 0.00 36.81 4.40
204 205 3.379057 CCATGCATGTTGTGAGATTAGCA 59.621 43.478 24.58 0.00 35.03 3.49
205 206 3.628942 TCCATGCATGTTGTGAGATTAGC 59.371 43.478 24.58 0.00 0.00 3.09
206 207 4.880120 AGTCCATGCATGTTGTGAGATTAG 59.120 41.667 24.58 5.47 0.00 1.73
207 208 4.637091 CAGTCCATGCATGTTGTGAGATTA 59.363 41.667 24.58 0.00 0.00 1.75
208 209 3.442625 CAGTCCATGCATGTTGTGAGATT 59.557 43.478 24.58 8.08 0.00 2.40
209 210 3.014623 CAGTCCATGCATGTTGTGAGAT 58.985 45.455 24.58 4.56 0.00 2.75
210 211 2.429478 CAGTCCATGCATGTTGTGAGA 58.571 47.619 24.58 11.08 0.00 3.27
211 212 2.913777 CAGTCCATGCATGTTGTGAG 57.086 50.000 24.58 8.85 0.00 3.51
222 223 2.028420 TGAAATCTCGGCAGTCCATG 57.972 50.000 0.00 0.00 0.00 3.66
223 224 2.486191 GGATGAAATCTCGGCAGTCCAT 60.486 50.000 0.00 0.00 44.71 3.41
224 225 1.134401 GGATGAAATCTCGGCAGTCCA 60.134 52.381 0.00 0.00 44.71 4.02
225 226 1.139853 AGGATGAAATCTCGGCAGTCC 59.860 52.381 0.00 0.00 44.71 3.85
226 227 2.478831 GAGGATGAAATCTCGGCAGTC 58.521 52.381 0.00 0.00 44.71 3.51
227 228 1.202463 CGAGGATGAAATCTCGGCAGT 60.202 52.381 5.00 0.00 44.71 4.40
228 229 1.495878 CGAGGATGAAATCTCGGCAG 58.504 55.000 5.00 0.00 44.71 4.85
229 230 0.530650 GCGAGGATGAAATCTCGGCA 60.531 55.000 13.39 0.00 44.71 5.69
230 231 1.552348 CGCGAGGATGAAATCTCGGC 61.552 60.000 0.00 6.13 44.71 5.54
231 232 0.249073 ACGCGAGGATGAAATCTCGG 60.249 55.000 15.93 7.11 44.71 4.63
232 233 0.848942 CACGCGAGGATGAAATCTCG 59.151 55.000 15.93 8.18 44.71 4.04
233 234 1.212616 CCACGCGAGGATGAAATCTC 58.787 55.000 18.51 0.00 44.71 2.75
234 235 0.811616 GCCACGCGAGGATGAAATCT 60.812 55.000 27.39 0.00 44.71 2.40
235 236 1.089481 TGCCACGCGAGGATGAAATC 61.089 55.000 27.39 6.96 44.55 2.17
236 237 1.078497 TGCCACGCGAGGATGAAAT 60.078 52.632 27.39 0.00 0.00 2.17
237 238 2.032634 GTGCCACGCGAGGATGAAA 61.033 57.895 27.39 2.57 0.00 2.69
238 239 2.434185 GTGCCACGCGAGGATGAA 60.434 61.111 27.39 5.19 0.00 2.57
239 240 4.451150 GGTGCCACGCGAGGATGA 62.451 66.667 27.39 6.01 0.00 2.92
240 241 4.758251 TGGTGCCACGCGAGGATG 62.758 66.667 27.39 7.16 0.00 3.51
241 242 3.785859 ATGGTGCCACGCGAGGAT 61.786 61.111 27.39 7.75 0.00 3.24
242 243 4.758251 CATGGTGCCACGCGAGGA 62.758 66.667 27.39 9.03 0.00 3.71
244 245 3.490759 GACATGGTGCCACGCGAG 61.491 66.667 15.93 4.16 0.00 5.03
251 252 1.066215 GGATTTTTGGGACATGGTGCC 60.066 52.381 0.00 0.00 44.48 5.01
252 253 1.404047 CGGATTTTTGGGACATGGTGC 60.404 52.381 0.00 0.00 39.30 5.01
253 254 1.404047 GCGGATTTTTGGGACATGGTG 60.404 52.381 0.00 0.00 39.30 4.17
254 255 0.894835 GCGGATTTTTGGGACATGGT 59.105 50.000 0.00 0.00 39.30 3.55
255 256 0.179140 CGCGGATTTTTGGGACATGG 60.179 55.000 0.00 0.00 39.30 3.66
256 257 0.525761 ACGCGGATTTTTGGGACATG 59.474 50.000 12.47 0.00 39.30 3.21
257 258 0.808755 GACGCGGATTTTTGGGACAT 59.191 50.000 12.47 0.00 39.30 3.06
258 259 1.570347 CGACGCGGATTTTTGGGACA 61.570 55.000 12.47 0.00 0.00 4.02
259 260 1.133869 CGACGCGGATTTTTGGGAC 59.866 57.895 12.47 0.00 0.00 4.46
260 261 0.037512 TACGACGCGGATTTTTGGGA 60.038 50.000 12.47 0.00 0.00 4.37
261 262 1.011333 ATACGACGCGGATTTTTGGG 58.989 50.000 12.47 0.00 0.00 4.12
262 263 2.348218 GCTATACGACGCGGATTTTTGG 60.348 50.000 12.47 0.00 30.80 3.28
263 264 2.348218 GGCTATACGACGCGGATTTTTG 60.348 50.000 12.47 0.00 30.80 2.44
264 265 1.862827 GGCTATACGACGCGGATTTTT 59.137 47.619 12.47 0.00 30.80 1.94
265 266 1.494824 GGCTATACGACGCGGATTTT 58.505 50.000 12.47 0.00 30.80 1.82
266 267 0.319297 GGGCTATACGACGCGGATTT 60.319 55.000 12.47 0.00 30.80 2.17
267 268 1.177256 AGGGCTATACGACGCGGATT 61.177 55.000 12.47 0.00 30.80 3.01
268 269 0.321919 TAGGGCTATACGACGCGGAT 60.322 55.000 12.47 0.18 33.72 4.18
269 270 0.952497 CTAGGGCTATACGACGCGGA 60.952 60.000 12.47 0.00 0.00 5.54
270 271 1.500844 CTAGGGCTATACGACGCGG 59.499 63.158 12.47 0.00 0.00 6.46
271 272 1.233285 ACCTAGGGCTATACGACGCG 61.233 60.000 14.81 3.53 0.00 6.01
272 273 0.520847 GACCTAGGGCTATACGACGC 59.479 60.000 14.81 0.00 0.00 5.19
273 274 2.181954 AGACCTAGGGCTATACGACG 57.818 55.000 18.31 0.00 0.00 5.12
274 275 6.656693 TGTTAATAGACCTAGGGCTATACGAC 59.343 42.308 33.34 28.16 0.00 4.34
275 276 6.782986 TGTTAATAGACCTAGGGCTATACGA 58.217 40.000 33.34 20.37 0.00 3.43
276 277 7.040201 TGTTGTTAATAGACCTAGGGCTATACG 60.040 40.741 33.34 0.00 0.00 3.06
277 278 8.186709 TGTTGTTAATAGACCTAGGGCTATAC 57.813 38.462 33.34 27.73 0.00 1.47
278 279 8.967779 ATGTTGTTAATAGACCTAGGGCTATA 57.032 34.615 33.34 18.88 0.00 1.31
279 280 7.038231 GGATGTTGTTAATAGACCTAGGGCTAT 60.038 40.741 28.98 28.98 0.00 2.97
283 284 6.494666 TGGATGTTGTTAATAGACCTAGGG 57.505 41.667 14.81 0.00 0.00 3.53
320 321 9.996554 TCTCATGATTTTCAGTACTTTGTAAGA 57.003 29.630 0.00 0.00 0.00 2.10
401 402 1.618487 TTGCACATGACCATCAGCAA 58.382 45.000 0.00 11.98 36.14 3.91
408 409 5.911752 ACTTTTTGTTATTGCACATGACCA 58.088 33.333 0.00 0.00 0.00 4.02
430 431 0.244721 GAGGGCATGCTTTGGTCAAC 59.755 55.000 18.92 0.00 0.00 3.18
431 432 0.112995 AGAGGGCATGCTTTGGTCAA 59.887 50.000 18.92 0.00 0.00 3.18
480 481 4.260784 GGATACATCCATTTCAGCGTCAAC 60.261 45.833 3.26 0.00 46.38 3.18
503 504 6.404844 CGATAGTAGTACTATTGGCCCATCTG 60.405 46.154 22.67 6.38 41.21 2.90
528 529 2.005971 AGCGTCAACTAATTCCGGAC 57.994 50.000 1.83 0.00 0.00 4.79
531 532 7.459394 TCTATTTTAGCGTCAACTAATTCCG 57.541 36.000 0.00 0.00 32.35 4.30
538 539 9.900710 CTAGATACATCTATTTTAGCGTCAACT 57.099 33.333 0.00 0.00 38.60 3.16
539 540 9.894783 TCTAGATACATCTATTTTAGCGTCAAC 57.105 33.333 0.00 0.00 38.60 3.18
542 543 9.509855 CCATCTAGATACATCTATTTTAGCGTC 57.490 37.037 4.54 0.00 38.60 5.19
543 544 8.470805 CCCATCTAGATACATCTATTTTAGCGT 58.529 37.037 4.54 0.00 38.60 5.07
544 545 7.923344 CCCCATCTAGATACATCTATTTTAGCG 59.077 40.741 4.54 0.00 38.60 4.26
545 546 7.713073 GCCCCATCTAGATACATCTATTTTAGC 59.287 40.741 4.54 0.00 38.60 3.09
546 547 8.762645 TGCCCCATCTAGATACATCTATTTTAG 58.237 37.037 4.54 0.00 38.60 1.85
547 548 8.540388 GTGCCCCATCTAGATACATCTATTTTA 58.460 37.037 4.54 0.00 38.60 1.52
548 549 7.017551 TGTGCCCCATCTAGATACATCTATTTT 59.982 37.037 4.54 0.00 38.60 1.82
549 550 6.501805 TGTGCCCCATCTAGATACATCTATTT 59.498 38.462 4.54 0.00 38.60 1.40
550 551 6.025539 TGTGCCCCATCTAGATACATCTATT 58.974 40.000 4.54 0.00 38.60 1.73
551 552 5.593786 TGTGCCCCATCTAGATACATCTAT 58.406 41.667 4.54 0.00 38.60 1.98
552 553 5.010708 TGTGCCCCATCTAGATACATCTA 57.989 43.478 4.54 0.00 38.32 1.98
553 554 3.837146 CTGTGCCCCATCTAGATACATCT 59.163 47.826 4.54 0.00 40.86 2.90
554 555 3.055530 CCTGTGCCCCATCTAGATACATC 60.056 52.174 4.54 0.00 0.00 3.06
555 556 2.909006 CCTGTGCCCCATCTAGATACAT 59.091 50.000 4.54 0.00 0.00 2.29
556 557 2.090775 TCCTGTGCCCCATCTAGATACA 60.091 50.000 4.54 5.06 0.00 2.29
557 558 2.609747 TCCTGTGCCCCATCTAGATAC 58.390 52.381 4.54 0.06 0.00 2.24
558 559 3.176411 CATCCTGTGCCCCATCTAGATA 58.824 50.000 4.54 0.00 0.00 1.98
559 560 1.983691 CATCCTGTGCCCCATCTAGAT 59.016 52.381 0.00 0.00 0.00 1.98
560 561 1.062198 TCATCCTGTGCCCCATCTAGA 60.062 52.381 0.00 0.00 0.00 2.43
561 562 1.427809 TCATCCTGTGCCCCATCTAG 58.572 55.000 0.00 0.00 0.00 2.43
562 563 1.770658 CTTCATCCTGTGCCCCATCTA 59.229 52.381 0.00 0.00 0.00 1.98
563 564 0.549950 CTTCATCCTGTGCCCCATCT 59.450 55.000 0.00 0.00 0.00 2.90
564 565 0.466922 CCTTCATCCTGTGCCCCATC 60.467 60.000 0.00 0.00 0.00 3.51
565 566 1.616921 CCTTCATCCTGTGCCCCAT 59.383 57.895 0.00 0.00 0.00 4.00
566 567 2.615465 CCCTTCATCCTGTGCCCCA 61.615 63.158 0.00 0.00 0.00 4.96
567 568 2.276309 CTCCCTTCATCCTGTGCCCC 62.276 65.000 0.00 0.00 0.00 5.80
568 569 1.225704 CTCCCTTCATCCTGTGCCC 59.774 63.158 0.00 0.00 0.00 5.36
569 570 0.393537 CACTCCCTTCATCCTGTGCC 60.394 60.000 0.00 0.00 0.00 5.01
570 571 0.326264 ACACTCCCTTCATCCTGTGC 59.674 55.000 0.00 0.00 0.00 4.57
571 572 5.815233 ATATACACTCCCTTCATCCTGTG 57.185 43.478 0.00 0.00 0.00 3.66
572 573 6.831664 AAATATACACTCCCTTCATCCTGT 57.168 37.500 0.00 0.00 0.00 4.00
573 574 6.425114 CGAAAATATACACTCCCTTCATCCTG 59.575 42.308 0.00 0.00 0.00 3.86
574 575 6.326583 TCGAAAATATACACTCCCTTCATCCT 59.673 38.462 0.00 0.00 0.00 3.24
575 576 6.424207 GTCGAAAATATACACTCCCTTCATCC 59.576 42.308 0.00 0.00 0.00 3.51
576 577 6.984474 TGTCGAAAATATACACTCCCTTCATC 59.016 38.462 0.00 0.00 0.00 2.92
577 578 6.884832 TGTCGAAAATATACACTCCCTTCAT 58.115 36.000 0.00 0.00 0.00 2.57
580 581 5.585047 GCTTGTCGAAAATATACACTCCCTT 59.415 40.000 0.00 0.00 0.00 3.95
582 583 4.272748 GGCTTGTCGAAAATATACACTCCC 59.727 45.833 0.00 0.00 0.00 4.30
588 589 6.663944 AAGACTGGCTTGTCGAAAATATAC 57.336 37.500 0.00 0.00 41.47 1.47
592 593 4.137543 AGAAAGACTGGCTTGTCGAAAAT 58.862 39.130 0.00 0.00 41.47 1.82
669 682 3.429410 GCTTCCTCTCTTCTTCTGCTCTC 60.429 52.174 0.00 0.00 0.00 3.20
697 710 3.905454 TGGAGCAGTCCACCATGT 58.095 55.556 0.00 0.00 46.77 3.21
737 758 9.470399 TTGACTCCTACTGTACTGTATAATCAA 57.530 33.333 12.40 14.90 0.00 2.57
743 764 8.041323 CCAAAATTGACTCCTACTGTACTGTAT 58.959 37.037 12.40 0.00 0.00 2.29
744 765 7.383687 CCAAAATTGACTCCTACTGTACTGTA 58.616 38.462 11.58 11.58 0.00 2.74
745 766 6.231211 CCAAAATTGACTCCTACTGTACTGT 58.769 40.000 10.46 10.46 0.00 3.55
746 767 5.122396 GCCAAAATTGACTCCTACTGTACTG 59.878 44.000 0.00 0.00 0.00 2.74
747 768 5.221843 TGCCAAAATTGACTCCTACTGTACT 60.222 40.000 0.00 0.00 0.00 2.73
748 769 5.001232 TGCCAAAATTGACTCCTACTGTAC 58.999 41.667 0.00 0.00 0.00 2.90
749 770 5.235850 TGCCAAAATTGACTCCTACTGTA 57.764 39.130 0.00 0.00 0.00 2.74
750 771 4.074970 CTGCCAAAATTGACTCCTACTGT 58.925 43.478 0.00 0.00 0.00 3.55
751 772 3.119708 GCTGCCAAAATTGACTCCTACTG 60.120 47.826 0.00 0.00 0.00 2.74
752 773 3.084786 GCTGCCAAAATTGACTCCTACT 58.915 45.455 0.00 0.00 0.00 2.57
753 774 2.164422 GGCTGCCAAAATTGACTCCTAC 59.836 50.000 15.17 0.00 0.00 3.18
878 913 0.390998 GAGAGGGAAGAGCTGTGTGC 60.391 60.000 0.00 0.00 43.29 4.57
879 914 0.248843 GGAGAGGGAAGAGCTGTGTG 59.751 60.000 0.00 0.00 0.00 3.82
880 915 0.178921 TGGAGAGGGAAGAGCTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
881 916 0.979665 TTGGAGAGGGAAGAGCTGTG 59.020 55.000 0.00 0.00 0.00 3.66
989 1026 3.823873 TGTTGGCGACATTAACTGGAAAT 59.176 39.130 2.68 0.00 42.32 2.17
1641 1678 2.638744 AGCTTTGCTTCAGCTGGTC 58.361 52.632 15.13 3.86 46.25 4.02
1947 1990 2.457366 AACAGGTAGTTTCTGCTCCG 57.543 50.000 0.00 0.00 37.03 4.63
1990 2033 1.002069 TGGGACGGAGGGAGTACTTA 58.998 55.000 0.00 0.00 0.00 2.24
1991 2034 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24
2001 2044 1.353022 AGGCACTTATTTTGGGACGGA 59.647 47.619 0.00 0.00 27.25 4.69
2015 2058 7.611855 ACAAATTTATACTAAGCTCAAGGCACT 59.388 33.333 0.00 0.00 44.79 4.40
2038 2081 9.856488 CTCAACTTTGTACTAGCTCTAATACAA 57.144 33.333 6.81 6.81 36.39 2.41
2039 2082 9.239551 TCTCAACTTTGTACTAGCTCTAATACA 57.760 33.333 0.00 0.00 0.00 2.29
2040 2083 9.505995 GTCTCAACTTTGTACTAGCTCTAATAC 57.494 37.037 0.00 0.00 0.00 1.89
2041 2084 9.239551 TGTCTCAACTTTGTACTAGCTCTAATA 57.760 33.333 0.00 0.00 0.00 0.98
2042 2085 8.030106 GTGTCTCAACTTTGTACTAGCTCTAAT 58.970 37.037 0.00 0.00 0.00 1.73
2043 2086 7.230913 AGTGTCTCAACTTTGTACTAGCTCTAA 59.769 37.037 0.00 0.00 0.00 2.10
2044 2087 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
2045 2088 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
2046 2089 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2047 2090 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2048 2091 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2051 2094 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
2052 2095 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
2053 2096 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
2054 2097 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
2055 2098 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
2056 2099 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2057 2100 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
2058 2101 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
2059 2102 5.614887 GCCGTCTCAAAATAAGTGTCTCAAC 60.615 44.000 0.00 0.00 0.00 3.18
2060 2103 4.451096 GCCGTCTCAAAATAAGTGTCTCAA 59.549 41.667 0.00 0.00 0.00 3.02
2061 2104 3.994392 GCCGTCTCAAAATAAGTGTCTCA 59.006 43.478 0.00 0.00 0.00 3.27
2062 2105 3.060895 CGCCGTCTCAAAATAAGTGTCTC 59.939 47.826 0.00 0.00 0.00 3.36
2063 2106 2.993899 CGCCGTCTCAAAATAAGTGTCT 59.006 45.455 0.00 0.00 0.00 3.41
2064 2107 2.093783 CCGCCGTCTCAAAATAAGTGTC 59.906 50.000 0.00 0.00 0.00 3.67
2065 2108 2.073816 CCGCCGTCTCAAAATAAGTGT 58.926 47.619 0.00 0.00 0.00 3.55
2066 2109 1.396996 CCCGCCGTCTCAAAATAAGTG 59.603 52.381 0.00 0.00 0.00 3.16
2067 2110 1.276989 TCCCGCCGTCTCAAAATAAGT 59.723 47.619 0.00 0.00 0.00 2.24
2068 2111 1.933853 CTCCCGCCGTCTCAAAATAAG 59.066 52.381 0.00 0.00 0.00 1.73
2069 2112 1.276989 ACTCCCGCCGTCTCAAAATAA 59.723 47.619 0.00 0.00 0.00 1.40
2070 2113 0.899720 ACTCCCGCCGTCTCAAAATA 59.100 50.000 0.00 0.00 0.00 1.40
2071 2114 0.899720 TACTCCCGCCGTCTCAAAAT 59.100 50.000 0.00 0.00 0.00 1.82
2072 2115 0.037975 GTACTCCCGCCGTCTCAAAA 60.038 55.000 0.00 0.00 0.00 2.44
2073 2116 1.180456 TGTACTCCCGCCGTCTCAAA 61.180 55.000 0.00 0.00 0.00 2.69
2074 2117 0.968901 ATGTACTCCCGCCGTCTCAA 60.969 55.000 0.00 0.00 0.00 3.02
2075 2118 1.379443 ATGTACTCCCGCCGTCTCA 60.379 57.895 0.00 0.00 0.00 3.27
2076 2119 1.102222 AGATGTACTCCCGCCGTCTC 61.102 60.000 0.00 0.00 0.00 3.36
2077 2120 0.683504 AAGATGTACTCCCGCCGTCT 60.684 55.000 0.00 0.00 0.00 4.18
2078 2121 0.175073 AAAGATGTACTCCCGCCGTC 59.825 55.000 0.00 0.00 0.00 4.79
2079 2122 0.108329 CAAAGATGTACTCCCGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
2091 2134 8.940768 TGGGTTTTAGAAAAAGTTCAAAGATG 57.059 30.769 0.00 0.00 36.09 2.90
2253 2298 2.217510 ATATCGGCGGAGGTATCACT 57.782 50.000 7.21 0.00 0.00 3.41
2284 2329 2.205074 GTGTACGATGGAGATTGGCAG 58.795 52.381 0.00 0.00 0.00 4.85
2338 2383 4.564940 ACGTCGAACTTGTAGAGAAACT 57.435 40.909 0.00 0.00 0.00 2.66
2450 2495 9.624697 GTATGACTCAAAATTCTTGCAATGTTA 57.375 29.630 0.00 0.00 0.00 2.41
2458 2503 7.121974 ACGACTGTATGACTCAAAATTCTTG 57.878 36.000 0.00 0.00 0.00 3.02
2459 2504 8.088981 ACTACGACTGTATGACTCAAAATTCTT 58.911 33.333 0.00 0.00 0.00 2.52
2461 2506 7.813852 ACTACGACTGTATGACTCAAAATTC 57.186 36.000 0.00 0.00 0.00 2.17
2462 2507 9.136952 GTAACTACGACTGTATGACTCAAAATT 57.863 33.333 0.00 0.00 0.00 1.82
2476 2521 2.035576 GGGGGCATAGTAACTACGACTG 59.964 54.545 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.