Multiple sequence alignment - TraesCS7B01G224100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G224100 chr7B 100.000 7011 0 0 1 7011 423773240 423766230 0.000000e+00 12947.0
1 TraesCS7B01G224100 chr7B 97.183 71 2 0 5973 6043 423767078 423767008 3.430000e-23 121.0
2 TraesCS7B01G224100 chr7B 97.183 71 2 0 6163 6233 423767268 423767198 3.430000e-23 121.0
3 TraesCS7B01G224100 chr7D 96.282 5057 163 12 992 6043 409462767 409457731 0.000000e+00 8274.0
4 TraesCS7B01G224100 chr7D 94.804 866 16 5 6149 7011 409457731 409456892 0.000000e+00 1323.0
5 TraesCS7B01G224100 chr7D 92.574 781 43 10 205 973 409463529 409462752 0.000000e+00 1107.0
6 TraesCS7B01G224100 chr7D 93.976 83 5 0 5961 6043 409457726 409457644 7.380000e-25 126.0
7 TraesCS7B01G224100 chr7D 97.333 75 1 1 6163 6236 409457801 409457727 7.380000e-25 126.0
8 TraesCS7B01G224100 chr7A 96.749 2738 81 7 993 3725 469990059 469987325 0.000000e+00 4556.0
9 TraesCS7B01G224100 chr7A 94.437 2355 78 15 3717 6043 469987294 469984965 0.000000e+00 3574.0
10 TraesCS7B01G224100 chr7A 94.002 867 25 3 6149 7011 469984965 469984122 0.000000e+00 1288.0
11 TraesCS7B01G224100 chr7A 91.581 582 36 2 205 785 470119570 470119001 0.000000e+00 791.0
12 TraesCS7B01G224100 chr7A 94.089 203 8 1 775 973 469990247 469990045 8.840000e-79 305.0
13 TraesCS7B01G224100 chr7A 93.023 172 11 1 39 210 62993142 62992972 4.200000e-62 250.0
14 TraesCS7B01G224100 chr7A 86.076 237 24 8 554 787 78658040 78657810 5.430000e-61 246.0
15 TraesCS7B01G224100 chr7A 92.000 75 1 3 6163 6236 469985031 469984961 4.470000e-17 100.0
16 TraesCS7B01G224100 chr3A 94.186 172 9 1 35 206 585605635 585605805 1.940000e-65 261.0
17 TraesCS7B01G224100 chr3A 86.096 187 22 4 537 722 638439636 638439819 1.540000e-46 198.0
18 TraesCS7B01G224100 chr3A 94.488 127 4 3 6042 6168 583676697 583676574 7.180000e-45 193.0
19 TraesCS7B01G224100 chr3A 83.333 144 13 3 658 790 313536106 313535963 9.550000e-24 122.0
20 TraesCS7B01G224100 chr6D 94.083 169 10 0 35 203 406391527 406391359 2.510000e-64 257.0
21 TraesCS7B01G224100 chr6D 98.276 116 1 1 6039 6153 75829294 75829179 1.190000e-47 202.0
22 TraesCS7B01G224100 chr4A 94.118 170 8 1 4476 4643 448515226 448515057 2.510000e-64 257.0
23 TraesCS7B01G224100 chr4A 74.909 275 46 16 550 806 12878298 12878567 3.460000e-18 104.0
24 TraesCS7B01G224100 chr1A 94.512 164 9 0 40 203 132544221 132544058 3.250000e-63 254.0
25 TraesCS7B01G224100 chr5B 93.023 172 11 1 36 207 577516217 577516047 4.200000e-62 250.0
26 TraesCS7B01G224100 chr5B 91.257 183 12 4 39 218 93472265 93472084 5.430000e-61 246.0
27 TraesCS7B01G224100 chr4D 92.571 175 9 2 4473 4643 122199878 122200052 1.510000e-61 248.0
28 TraesCS7B01G224100 chr4D 84.337 249 28 7 549 787 339065095 339064848 4.230000e-57 233.0
29 TraesCS7B01G224100 chr4D 86.802 197 22 4 594 787 165756611 165756806 4.260000e-52 217.0
30 TraesCS7B01G224100 chr4D 98.276 116 1 1 6039 6153 131123725 131123840 1.190000e-47 202.0
31 TraesCS7B01G224100 chr1D 89.796 196 17 3 17 210 393753472 393753278 1.510000e-61 248.0
32 TraesCS7B01G224100 chr1D 91.477 176 9 5 4458 4629 394864345 394864518 3.270000e-58 237.0
33 TraesCS7B01G224100 chr1D 95.902 122 5 0 6028 6149 448026821 448026700 1.540000e-46 198.0
34 TraesCS7B01G224100 chr5D 93.413 167 9 1 4476 4640 119768969 119768803 5.430000e-61 246.0
35 TraesCS7B01G224100 chr5D 92.353 170 11 1 4473 4640 508111955 508112124 2.530000e-59 241.0
36 TraesCS7B01G224100 chr5D 89.785 186 17 1 4458 4641 559427206 559427021 3.270000e-58 237.0
37 TraesCS7B01G224100 chr2D 93.452 168 8 2 4476 4640 628591814 628591981 5.430000e-61 246.0
38 TraesCS7B01G224100 chr2D 90.761 184 15 2 23 204 289313075 289313258 1.950000e-60 244.0
39 TraesCS7B01G224100 chr2D 90.761 184 16 1 38 220 426427800 426427983 1.950000e-60 244.0
40 TraesCS7B01G224100 chr2D 84.375 256 23 12 549 791 158246188 158245937 1.180000e-57 235.0
41 TraesCS7B01G224100 chr2D 95.968 124 3 2 6039 6160 473880141 473880264 4.290000e-47 200.0
42 TraesCS7B01G224100 chr3B 84.553 246 22 11 549 780 394097770 394098013 5.470000e-56 230.0
43 TraesCS7B01G224100 chr3B 82.258 248 35 6 549 789 818983972 818983727 9.220000e-49 206.0
44 TraesCS7B01G224100 chr3B 84.444 90 8 6 724 809 161088285 161088198 4.510000e-12 84.2
45 TraesCS7B01G224100 chr6A 96.000 125 3 2 6035 6157 150232481 150232605 1.190000e-47 202.0
46 TraesCS7B01G224100 chr2A 93.939 132 3 5 6042 6169 676459015 676458885 2.000000e-45 195.0
47 TraesCS7B01G224100 chr2B 93.798 129 6 2 6022 6148 131290915 131290787 7.180000e-45 193.0
48 TraesCS7B01G224100 chr2B 81.301 246 26 9 553 787 13813624 13813388 1.550000e-41 182.0
49 TraesCS7B01G224100 chr1B 92.537 134 7 3 6038 6169 5934819 5934951 9.280000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G224100 chr7B 423766230 423773240 7010 True 12947.0 12947 100.0000 1 7011 1 chr7B.!!$R1 7010
1 TraesCS7B01G224100 chr7D 409456892 409463529 6637 True 2191.2 8274 94.9938 205 7011 5 chr7D.!!$R1 6806
2 TraesCS7B01G224100 chr7A 469984122 469990247 6125 True 1964.6 4556 94.2554 775 7011 5 chr7A.!!$R4 6236
3 TraesCS7B01G224100 chr7A 470119001 470119570 569 True 791.0 791 91.5810 205 785 1 chr7A.!!$R3 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 987 0.038744 CCCCACAGGAGTCTGCATTT 59.961 55.0 0.00 0.00 44.59 2.32 F
1334 1352 0.539438 TTTTCGAGCTGGGGTTGCAT 60.539 50.0 0.00 0.00 0.00 3.96 F
1567 1585 0.790814 GCGTAGGCGGCATCTATTTC 59.209 55.0 13.08 0.00 38.78 2.17 F
3041 3064 0.748450 TGACGAGTCCAAGGTTCGTT 59.252 50.0 17.46 6.68 46.38 3.85 F
4032 4095 0.249031 GAGCTGTTTTTGCCGTTGCT 60.249 50.0 0.00 0.00 38.71 3.91 F
4393 4457 0.793617 TCTCTCTTTCTGGGGAGGGT 59.206 55.0 0.00 0.00 32.37 4.34 F
5611 5703 0.973632 AGGCAGACAACATGGACGTA 59.026 50.0 0.00 0.00 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 1833 0.616371 CCCTCCGTATGGGAACAACA 59.384 55.000 0.00 0.0 46.61 3.33 R
2751 2774 1.199789 TGCAAACATCGAATCACCTGC 59.800 47.619 0.00 0.0 0.00 4.85 R
3434 3458 1.544691 GGTACCAGCTGAACTCGAAGA 59.455 52.381 17.39 0.0 0.00 2.87 R
4575 4641 0.325296 TCAACTCCAGGGCCGACTAT 60.325 55.000 0.00 0.0 0.00 2.12 R
5490 5582 0.823356 ACAGGGAAAGTGCGTGCAAT 60.823 50.000 0.00 0.0 0.00 3.56 R
5632 5724 0.895530 TAGGACTGGCTTCCGTCTTG 59.104 55.000 0.74 0.0 41.04 3.02 R
6422 6518 0.333993 ATCTGCCCAAGATTGCCTGT 59.666 50.000 0.00 0.0 43.52 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.165035 CTTATAAGTTCTATACTACTCCCTCCG 57.835 40.741 4.18 0.00 35.54 4.63
49 50 5.385628 AAGTTCTATACTACTCCCTCCGT 57.614 43.478 0.00 0.00 35.54 4.69
50 51 5.385628 AGTTCTATACTACTCCCTCCGTT 57.614 43.478 0.00 0.00 34.56 4.44
51 52 5.375773 AGTTCTATACTACTCCCTCCGTTC 58.624 45.833 0.00 0.00 34.56 3.95
52 53 4.363991 TCTATACTACTCCCTCCGTTCC 57.636 50.000 0.00 0.00 0.00 3.62
53 54 3.718434 TCTATACTACTCCCTCCGTTCCA 59.282 47.826 0.00 0.00 0.00 3.53
54 55 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
55 56 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
56 57 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
57 58 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
58 59 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
59 60 4.720273 ACTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
60 61 4.586306 ACTCCCTCCGTTCCAAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
61 62 4.930696 ACTCCCTCCGTTCCAAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
62 63 4.705023 ACTCCCTCCGTTCCAAAATATTTG 59.295 41.667 0.39 0.00 0.00 2.32
63 64 4.020543 TCCCTCCGTTCCAAAATATTTGG 58.979 43.478 14.31 14.31 40.87 3.28
64 65 3.430236 CCCTCCGTTCCAAAATATTTGGC 60.430 47.826 15.40 3.81 39.38 4.52
65 66 3.447229 CCTCCGTTCCAAAATATTTGGCT 59.553 43.478 15.40 0.00 39.38 4.75
66 67 4.081697 CCTCCGTTCCAAAATATTTGGCTT 60.082 41.667 15.40 0.00 39.38 4.35
67 68 5.476091 TCCGTTCCAAAATATTTGGCTTT 57.524 34.783 15.40 0.00 39.38 3.51
68 69 5.474825 TCCGTTCCAAAATATTTGGCTTTC 58.525 37.500 15.40 6.29 39.38 2.62
69 70 5.245075 TCCGTTCCAAAATATTTGGCTTTCT 59.755 36.000 15.40 0.00 39.38 2.52
70 71 6.434652 TCCGTTCCAAAATATTTGGCTTTCTA 59.565 34.615 15.40 0.00 39.38 2.10
71 72 6.751888 CCGTTCCAAAATATTTGGCTTTCTAG 59.248 38.462 15.40 4.48 39.38 2.43
72 73 7.362574 CCGTTCCAAAATATTTGGCTTTCTAGA 60.363 37.037 15.40 0.00 39.38 2.43
73 74 7.698130 CGTTCCAAAATATTTGGCTTTCTAGAG 59.302 37.037 15.40 0.00 39.38 2.43
74 75 8.739972 GTTCCAAAATATTTGGCTTTCTAGAGA 58.260 33.333 15.40 0.00 39.38 3.10
75 76 9.479549 TTCCAAAATATTTGGCTTTCTAGAGAT 57.520 29.630 15.40 0.00 39.38 2.75
76 77 9.479549 TCCAAAATATTTGGCTTTCTAGAGATT 57.520 29.630 15.40 0.00 39.38 2.40
84 85 6.764308 TGGCTTTCTAGAGATTTCAAATGG 57.236 37.500 0.00 0.00 0.00 3.16
85 86 6.484288 TGGCTTTCTAGAGATTTCAAATGGA 58.516 36.000 0.00 0.00 0.00 3.41
86 87 6.375455 TGGCTTTCTAGAGATTTCAAATGGAC 59.625 38.462 0.00 0.00 0.00 4.02
87 88 6.601217 GGCTTTCTAGAGATTTCAAATGGACT 59.399 38.462 0.00 0.00 0.00 3.85
88 89 7.770897 GGCTTTCTAGAGATTTCAAATGGACTA 59.229 37.037 0.00 0.00 0.00 2.59
89 90 8.608317 GCTTTCTAGAGATTTCAAATGGACTAC 58.392 37.037 0.00 0.00 0.00 2.73
90 91 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
108 109 9.990868 TGGACTACCACATACAGATGTATATAT 57.009 33.333 5.21 0.00 44.82 0.86
144 145 7.934855 AGTGTAGATTCATTCATTTTGCTCT 57.065 32.000 0.00 0.00 0.00 4.09
145 146 7.759465 AGTGTAGATTCATTCATTTTGCTCTG 58.241 34.615 0.00 0.00 0.00 3.35
146 147 7.392673 AGTGTAGATTCATTCATTTTGCTCTGT 59.607 33.333 0.00 0.00 0.00 3.41
147 148 8.668353 GTGTAGATTCATTCATTTTGCTCTGTA 58.332 33.333 0.00 0.00 0.00 2.74
148 149 9.399797 TGTAGATTCATTCATTTTGCTCTGTAT 57.600 29.630 0.00 0.00 0.00 2.29
149 150 9.661187 GTAGATTCATTCATTTTGCTCTGTATG 57.339 33.333 0.00 0.00 0.00 2.39
150 151 8.289939 AGATTCATTCATTTTGCTCTGTATGT 57.710 30.769 0.00 0.00 0.00 2.29
151 152 9.399797 AGATTCATTCATTTTGCTCTGTATGTA 57.600 29.630 0.00 0.00 0.00 2.29
152 153 9.661187 GATTCATTCATTTTGCTCTGTATGTAG 57.339 33.333 0.00 0.00 0.00 2.74
153 154 8.565896 TTCATTCATTTTGCTCTGTATGTAGT 57.434 30.769 0.00 0.00 0.00 2.73
154 155 8.201554 TCATTCATTTTGCTCTGTATGTAGTC 57.798 34.615 0.00 0.00 0.00 2.59
155 156 7.823799 TCATTCATTTTGCTCTGTATGTAGTCA 59.176 33.333 0.00 0.00 0.00 3.41
156 157 6.968131 TCATTTTGCTCTGTATGTAGTCAC 57.032 37.500 0.00 0.00 0.00 3.67
157 158 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
158 159 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
159 160 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
160 161 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
161 162 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
162 163 6.584185 TGCTCTGTATGTAGTCACTTGTTA 57.416 37.500 0.00 0.00 0.00 2.41
163 164 6.988522 TGCTCTGTATGTAGTCACTTGTTAA 58.011 36.000 0.00 0.00 0.00 2.01
164 165 7.438564 TGCTCTGTATGTAGTCACTTGTTAAA 58.561 34.615 0.00 0.00 0.00 1.52
165 166 7.929245 TGCTCTGTATGTAGTCACTTGTTAAAA 59.071 33.333 0.00 0.00 0.00 1.52
166 167 8.936864 GCTCTGTATGTAGTCACTTGTTAAAAT 58.063 33.333 0.00 0.00 0.00 1.82
198 199 9.503427 GAAAGACAAATATTTAGAAACGGATGG 57.497 33.333 0.00 0.00 0.00 3.51
199 200 8.801882 AAGACAAATATTTAGAAACGGATGGA 57.198 30.769 0.00 0.00 0.00 3.41
200 201 8.438676 AGACAAATATTTAGAAACGGATGGAG 57.561 34.615 0.00 0.00 0.00 3.86
201 202 8.047310 AGACAAATATTTAGAAACGGATGGAGT 58.953 33.333 0.00 0.00 0.00 3.85
202 203 9.321562 GACAAATATTTAGAAACGGATGGAGTA 57.678 33.333 0.00 0.00 0.00 2.59
203 204 9.106070 ACAAATATTTAGAAACGGATGGAGTAC 57.894 33.333 0.00 0.00 0.00 2.73
258 259 3.910568 TTGCAATCCATCATTTTCCCC 57.089 42.857 0.00 0.00 0.00 4.81
321 322 3.622166 TTTCCGAATCCCAGTAAGGAC 57.378 47.619 0.00 0.00 39.24 3.85
365 366 2.839486 TCATGCATATCTCCGTTCCC 57.161 50.000 0.00 0.00 0.00 3.97
371 372 2.421529 GCATATCTCCGTTCCCACCTTT 60.422 50.000 0.00 0.00 0.00 3.11
608 616 7.455447 GTCAACTTTGAAAATTTGACCAAGTG 58.545 34.615 20.10 8.93 45.29 3.16
804 818 7.420029 AGGGAGTACTATAGAGTCAGGAAAAA 58.580 38.462 6.78 0.00 37.10 1.94
849 863 3.705043 ACACTTAATACTACCGAGCCG 57.295 47.619 0.00 0.00 0.00 5.52
956 974 2.380249 TCTCTCTCTTCTTCTCCCCACA 59.620 50.000 0.00 0.00 0.00 4.17
957 975 2.760092 CTCTCTCTTCTTCTCCCCACAG 59.240 54.545 0.00 0.00 0.00 3.66
958 976 1.830477 CTCTCTTCTTCTCCCCACAGG 59.170 57.143 0.00 0.00 0.00 4.00
959 977 1.433199 TCTCTTCTTCTCCCCACAGGA 59.567 52.381 0.00 0.00 44.91 3.86
966 984 2.204034 TCCCCACAGGAGTCTGCA 59.796 61.111 0.00 0.00 44.59 4.41
967 985 1.229625 TCCCCACAGGAGTCTGCAT 60.230 57.895 0.00 0.00 44.59 3.96
968 986 0.842030 TCCCCACAGGAGTCTGCATT 60.842 55.000 0.00 0.00 44.59 3.56
969 987 0.038744 CCCCACAGGAGTCTGCATTT 59.961 55.000 0.00 0.00 44.59 2.32
970 988 1.171308 CCCACAGGAGTCTGCATTTG 58.829 55.000 0.00 0.00 44.59 2.32
971 989 1.171308 CCACAGGAGTCTGCATTTGG 58.829 55.000 0.00 0.00 44.59 3.28
972 990 1.271543 CCACAGGAGTCTGCATTTGGA 60.272 52.381 0.00 0.00 44.59 3.53
973 991 2.507484 CACAGGAGTCTGCATTTGGAA 58.493 47.619 0.00 0.00 44.59 3.53
974 992 3.087031 CACAGGAGTCTGCATTTGGAAT 58.913 45.455 0.00 0.00 44.59 3.01
975 993 3.508793 CACAGGAGTCTGCATTTGGAATT 59.491 43.478 0.00 0.00 44.59 2.17
976 994 3.760684 ACAGGAGTCTGCATTTGGAATTC 59.239 43.478 0.00 0.00 44.59 2.17
977 995 4.015084 CAGGAGTCTGCATTTGGAATTCT 58.985 43.478 5.23 0.00 33.86 2.40
978 996 4.096081 CAGGAGTCTGCATTTGGAATTCTC 59.904 45.833 5.23 0.00 33.86 2.87
979 997 4.012374 GGAGTCTGCATTTGGAATTCTCA 58.988 43.478 5.23 0.00 0.00 3.27
980 998 4.460382 GGAGTCTGCATTTGGAATTCTCAA 59.540 41.667 5.23 5.42 0.00 3.02
981 999 5.047802 GGAGTCTGCATTTGGAATTCTCAAA 60.048 40.000 18.35 18.35 38.30 2.69
982 1000 6.409524 AGTCTGCATTTGGAATTCTCAAAA 57.590 33.333 19.33 12.42 37.60 2.44
983 1001 6.819284 AGTCTGCATTTGGAATTCTCAAAAA 58.181 32.000 19.33 10.56 37.60 1.94
1100 1118 0.906066 TTTTCGATCCATCCCACCGA 59.094 50.000 0.00 0.00 0.00 4.69
1108 1126 1.982226 TCCATCCCACCGAAGAAGAAA 59.018 47.619 0.00 0.00 0.00 2.52
1295 1313 4.314440 GACTGTGCCGTGCCTCCA 62.314 66.667 0.00 0.00 0.00 3.86
1320 1338 3.200522 GCCTGGGGCTGATTTTCG 58.799 61.111 0.80 0.00 46.69 3.46
1334 1352 0.539438 TTTTCGAGCTGGGGTTGCAT 60.539 50.000 0.00 0.00 0.00 3.96
1336 1354 2.046023 CGAGCTGGGGTTGCATGA 60.046 61.111 0.00 0.00 0.00 3.07
1383 1401 3.716872 ACTTATCCCCTCCGATTTCATGT 59.283 43.478 0.00 0.00 0.00 3.21
1387 1405 1.571919 CCCTCCGATTTCATGTCGTC 58.428 55.000 3.85 0.00 37.39 4.20
1520 1538 3.053544 TCTCTCCTTCTGGTAGGTGGTAG 60.054 52.174 0.00 0.00 36.63 3.18
1545 1563 9.831737 AGCGTAATTTCATAATATCTTCAATGC 57.168 29.630 0.00 0.00 0.00 3.56
1567 1585 0.790814 GCGTAGGCGGCATCTATTTC 59.209 55.000 13.08 0.00 38.78 2.17
1715 1734 1.813513 CAGGTGAAAATCTGGCGTCT 58.186 50.000 0.00 0.00 0.00 4.18
1752 1771 4.081752 TGTTCAATTTTGCACTGACACCTT 60.082 37.500 0.00 0.00 0.00 3.50
1796 1815 3.119352 GCACCAGTTCTCCCAATTCAATC 60.119 47.826 0.00 0.00 0.00 2.67
1797 1816 4.081406 CACCAGTTCTCCCAATTCAATCA 58.919 43.478 0.00 0.00 0.00 2.57
1839 1859 1.986631 TCCCATACGGAGGGTTTGAAA 59.013 47.619 0.00 0.00 46.82 2.69
1918 1938 3.181445 TGGTCCTGTAGTCAGCATGTTTT 60.181 43.478 0.00 0.00 40.09 2.43
1942 1962 3.024547 ACGAGCTCTACTCAAAGGCATA 58.975 45.455 12.85 0.00 46.63 3.14
1952 1972 4.324267 ACTCAAAGGCATACTTGTGTACC 58.676 43.478 0.00 0.00 39.96 3.34
1955 1975 4.072131 CAAAGGCATACTTGTGTACCAGT 58.928 43.478 0.00 0.00 39.96 4.00
1983 2003 2.229543 TGGTTGAGCATTTGCATCTGTC 59.770 45.455 5.20 0.00 45.16 3.51
2044 2064 4.328983 CGTTGTTGTAGCTAATTGATCGGT 59.671 41.667 0.00 0.00 0.00 4.69
2053 2073 9.168451 TGTAGCTAATTGATCGGTTGAATTTTA 57.832 29.630 0.00 0.00 0.00 1.52
2077 2097 4.081309 TGTGTCCTAGGTATGTAAACTGGC 60.081 45.833 9.08 0.00 0.00 4.85
2146 2166 3.356290 AGGAAAATTTCTACTGCGGCAT 58.644 40.909 1.75 0.00 0.00 4.40
2150 2170 6.071616 AGGAAAATTTCTACTGCGGCATTTTA 60.072 34.615 1.75 0.00 0.00 1.52
2229 2250 2.298163 CCAAACTGGAAAGCTGCTGAAT 59.702 45.455 1.35 0.00 40.96 2.57
2275 2296 4.032960 ACCTGGCATGTCTGTAATTTCA 57.967 40.909 0.00 0.00 0.00 2.69
2363 2384 1.474077 GGTGCTAGGATTGCAACCTTG 59.526 52.381 20.78 19.35 41.83 3.61
2393 2414 7.284034 ACTCAAGGCACTCTAATATTTCATTGG 59.716 37.037 0.00 0.00 38.49 3.16
2417 2438 3.489355 TCATGAAATGCTTCACACACCT 58.511 40.909 0.00 0.00 46.21 4.00
2709 2732 1.942657 TCTGCTTCAGTTGACAACAGC 59.057 47.619 20.08 18.78 32.61 4.40
2965 2988 4.201950 CCTCAAGGCAAATCCAAGAATACG 60.202 45.833 0.00 0.00 37.29 3.06
3031 3054 5.409826 AGAACTTCAAAATCATGACGAGTCC 59.590 40.000 0.00 0.00 0.00 3.85
3041 3064 0.748450 TGACGAGTCCAAGGTTCGTT 59.252 50.000 17.46 6.68 46.38 3.85
3227 3250 6.715264 GCCAGCAGGTATAGTTATTTTACCAT 59.285 38.462 0.00 0.00 38.27 3.55
3264 3287 3.686726 GCTTACCTTCACCACATTCTCTG 59.313 47.826 0.00 0.00 0.00 3.35
3362 3386 7.141758 TGCCTATATTTTGTCAAGGAGAGAT 57.858 36.000 0.00 0.00 0.00 2.75
3375 3399 5.046304 TCAAGGAGAGATTTGTCAAGGTAGG 60.046 44.000 0.00 0.00 0.00 3.18
3412 3436 9.217278 CTTGAAATAACATCTCTATGATCCCAG 57.783 37.037 0.00 0.00 36.54 4.45
3434 3458 8.260114 CCCAGCTTTAAAATAAATGACTCCATT 58.740 33.333 0.00 0.00 44.38 3.16
3459 3483 2.230508 CGAGTTCAGCTGGTACCTACAA 59.769 50.000 15.13 0.00 0.00 2.41
3538 3562 5.121611 TCACATTACACGAACATCCAATCAC 59.878 40.000 0.00 0.00 0.00 3.06
3571 3595 7.121315 AGTTGAAGAAGGCTGTACATAATTTCC 59.879 37.037 0.00 0.00 0.00 3.13
3572 3596 6.721318 TGAAGAAGGCTGTACATAATTTCCT 58.279 36.000 0.00 0.00 0.00 3.36
3594 3618 3.891049 AGGCGCTTCTGGAAATTAGATT 58.109 40.909 7.64 0.00 0.00 2.40
3616 3640 9.240734 AGATTGACTTGCTTCATCTAAAATTCT 57.759 29.630 0.00 0.00 0.00 2.40
3648 3672 7.986562 GGATGGAACTAATGTTCTAACCTTTC 58.013 38.462 11.99 1.31 45.96 2.62
3719 3782 4.453136 GTGGTTTCTGGATACACGCTAAAA 59.547 41.667 0.00 0.00 46.17 1.52
3921 3984 0.971386 CTTCATTGGCTTGCAACCCT 59.029 50.000 12.01 0.00 0.00 4.34
4032 4095 0.249031 GAGCTGTTTTTGCCGTTGCT 60.249 50.000 0.00 0.00 38.71 3.91
4047 4110 4.058817 CCGTTGCTACTTTCAACTCTCTT 58.941 43.478 0.00 0.00 41.05 2.85
4176 4240 6.777213 TCTAGAGTCTTCTCCATTGGTTAC 57.223 41.667 0.00 0.00 41.26 2.50
4188 4252 4.042809 TCCATTGGTTACACAGGAACTCAT 59.957 41.667 1.86 0.00 34.60 2.90
4190 4254 5.106157 CCATTGGTTACACAGGAACTCATTC 60.106 44.000 0.00 0.00 34.60 2.67
4331 4395 1.690219 ATGAGGAACTAGGGCAGCCG 61.690 60.000 5.00 0.00 41.55 5.52
4385 4449 5.700373 CCCTTTTCTGTCTTCTCTCTTTCTG 59.300 44.000 0.00 0.00 0.00 3.02
4393 4457 0.793617 TCTCTCTTTCTGGGGAGGGT 59.206 55.000 0.00 0.00 32.37 4.34
4418 4482 6.939730 TGGTTTGCAGACAGTTTCTTATCATA 59.060 34.615 9.87 0.00 28.96 2.15
4446 4510 5.345702 CAATGATTGGTGCATCTTACCTTG 58.654 41.667 0.00 0.00 39.01 3.61
4575 4641 6.637657 TCATAGACTAGTCGACACTGAAGTA 58.362 40.000 19.50 0.76 33.62 2.24
4640 4706 3.132289 GTCCTTGGACTCGTAATCCATGA 59.868 47.826 12.20 9.04 45.71 3.07
4648 4714 3.627577 ACTCGTAATCCATGAATGCAACC 59.372 43.478 0.00 0.00 0.00 3.77
4649 4715 2.611751 TCGTAATCCATGAATGCAACCG 59.388 45.455 0.00 0.00 0.00 4.44
4829 4895 5.126061 GGGAAATGTCACATGCAGAAATACT 59.874 40.000 0.00 0.00 0.00 2.12
4841 4907 4.010349 GCAGAAATACTAAGCCACCAACT 58.990 43.478 0.00 0.00 0.00 3.16
4866 4932 4.375272 AGATAGCATGGAAGTTGATGTCG 58.625 43.478 0.00 0.00 0.00 4.35
4898 4964 1.362224 TTAAGAAGTCAGGCAGCCCT 58.638 50.000 8.22 0.00 44.25 5.19
4960 5026 4.508662 AGCACATTGAGTAAGCCTACTTC 58.491 43.478 0.00 0.00 38.55 3.01
4974 5040 5.246307 AGCCTACTTCGAAGCAATTTACTT 58.754 37.500 24.86 4.77 0.00 2.24
4976 5042 5.106673 GCCTACTTCGAAGCAATTTACTTGT 60.107 40.000 24.86 4.37 37.18 3.16
5001 5067 3.441222 TGCAATCAACTATGTGGCTGAAG 59.559 43.478 0.00 0.00 0.00 3.02
5051 5117 5.924825 AGTACTGGACAATCACTTTTACGTC 59.075 40.000 0.00 0.00 0.00 4.34
5052 5118 4.699637 ACTGGACAATCACTTTTACGTCA 58.300 39.130 0.00 0.00 0.00 4.35
5076 5143 8.877779 TCAAAGTGTATGAAATTTTGTTTGTGG 58.122 29.630 0.00 0.00 32.22 4.17
5256 5348 8.789762 GTTAAAATAGTTCCTACCACACACATT 58.210 33.333 0.00 0.00 0.00 2.71
5321 5413 7.973048 ATAGACCAAATAGTCTTCCAGTGTA 57.027 36.000 0.00 0.00 44.83 2.90
5462 5554 4.903054 AGTTTCAGTCTGAATCTGCATCA 58.097 39.130 20.56 1.13 35.69 3.07
5466 5558 3.118371 TCAGTCTGAATCTGCATCATGCT 60.118 43.478 11.84 0.00 45.31 3.79
5490 5582 7.067008 GCTTACATTGGCTATCTTTGTTCCTTA 59.933 37.037 0.00 0.00 0.00 2.69
5496 5588 5.125417 TGGCTATCTTTGTTCCTTATTGCAC 59.875 40.000 0.00 0.00 0.00 4.57
5515 5607 1.675641 GCACTTTCCCTGTGGCGAT 60.676 57.895 0.00 0.00 36.08 4.58
5518 5610 2.435938 TTTCCCTGTGGCGATCGC 60.436 61.111 31.52 31.52 41.06 4.58
5572 5664 2.978156 TGAAGGAAGGAAATGTGGCT 57.022 45.000 0.00 0.00 0.00 4.75
5611 5703 0.973632 AGGCAGACAACATGGACGTA 59.026 50.000 0.00 0.00 0.00 3.57
5632 5724 2.029518 GTTGGTGCCAGCAAAGCC 59.970 61.111 11.41 0.00 37.34 4.35
5671 5763 4.462834 CCTATGTCTGTAGAAGTGACACCA 59.537 45.833 0.84 0.00 42.43 4.17
5879 5971 2.237392 GCTGTAGTCCCAGAAATCCACT 59.763 50.000 0.00 0.00 34.23 4.00
5880 5972 3.680196 GCTGTAGTCCCAGAAATCCACTC 60.680 52.174 0.00 0.00 34.23 3.51
5888 5980 2.538437 CAGAAATCCACTCTCTGCTCG 58.462 52.381 0.00 0.00 30.91 5.03
5939 6031 6.457392 GCAGAAAGATCATGTCTATTTGCGAA 60.457 38.462 0.00 0.00 35.67 4.70
5944 6036 5.643348 AGATCATGTCTATTTGCGAACACAA 59.357 36.000 0.00 0.00 34.69 3.33
5949 6041 6.066054 TGTCTATTTGCGAACACAATTTGA 57.934 33.333 2.79 0.00 0.00 2.69
5997 6089 6.033831 GTCTTTTCACTGTTTGTTGTGTGATG 59.966 38.462 0.00 0.00 38.89 3.07
6046 6138 8.839310 AGACATAAATTGCTCATATGTACTCC 57.161 34.615 1.90 0.00 39.64 3.85
6047 6139 7.880195 AGACATAAATTGCTCATATGTACTCCC 59.120 37.037 1.90 0.00 39.64 4.30
6048 6140 7.749666 ACATAAATTGCTCATATGTACTCCCT 58.250 34.615 1.90 0.00 38.22 4.20
6049 6141 7.880195 ACATAAATTGCTCATATGTACTCCCTC 59.120 37.037 1.90 0.00 38.22 4.30
6050 6142 4.899352 ATTGCTCATATGTACTCCCTCC 57.101 45.455 1.90 0.00 0.00 4.30
6051 6143 2.239400 TGCTCATATGTACTCCCTCCG 58.761 52.381 1.90 0.00 0.00 4.63
6052 6144 2.240279 GCTCATATGTACTCCCTCCGT 58.760 52.381 1.90 0.00 0.00 4.69
6053 6145 2.628657 GCTCATATGTACTCCCTCCGTT 59.371 50.000 1.90 0.00 0.00 4.44
6054 6146 3.305471 GCTCATATGTACTCCCTCCGTTC 60.305 52.174 1.90 0.00 0.00 3.95
6055 6147 2.882761 TCATATGTACTCCCTCCGTTCG 59.117 50.000 1.90 0.00 0.00 3.95
6056 6148 1.683943 TATGTACTCCCTCCGTTCGG 58.316 55.000 4.74 4.74 0.00 4.30
6057 6149 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
6058 6150 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
6059 6151 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
6060 6152 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
6061 6153 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6062 6154 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6063 6155 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6064 6156 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6065 6157 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6066 6158 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6067 6159 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6068 6160 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
6069 6161 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
6070 6162 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
6071 6163 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
6072 6164 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
6073 6165 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
6074 6166 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
6075 6167 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
6076 6168 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
6077 6169 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
6078 6170 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
6079 6171 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
6080 6172 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
6081 6173 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
6082 6174 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
6083 6175 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
6084 6176 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
6085 6177 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
6086 6178 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
6087 6179 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
6088 6180 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
6089 6181 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
6090 6182 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
6091 6183 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
6092 6184 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
6093 6185 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
6094 6186 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
6119 6211 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
6120 6212 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
6121 6213 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
6122 6214 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
6123 6215 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
6124 6216 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
6125 6217 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
6126 6218 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
6127 6219 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
6128 6220 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
6129 6221 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
6130 6222 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
6131 6223 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
6132 6224 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
6133 6225 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
6134 6226 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
6135 6227 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
6136 6228 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
6137 6229 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
6138 6230 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
6139 6231 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
6140 6232 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
6141 6233 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
6142 6234 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6143 6235 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6144 6236 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6145 6237 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6146 6238 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6147 6239 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
6148 6240 1.856629 ATTCCGAACGGAGGGAGTAA 58.143 50.000 15.34 0.34 46.06 2.24
6309 6405 5.095490 CCCTTATTTCAATCACACGAAAGC 58.905 41.667 0.00 0.00 34.78 3.51
6310 6406 5.095490 CCTTATTTCAATCACACGAAAGCC 58.905 41.667 0.00 0.00 34.78 4.35
6311 6407 3.575965 ATTTCAATCACACGAAAGCCC 57.424 42.857 0.00 0.00 34.78 5.19
6312 6408 2.270352 TTCAATCACACGAAAGCCCT 57.730 45.000 0.00 0.00 0.00 5.19
6313 6409 2.270352 TCAATCACACGAAAGCCCTT 57.730 45.000 0.00 0.00 0.00 3.95
6314 6410 3.410631 TCAATCACACGAAAGCCCTTA 57.589 42.857 0.00 0.00 0.00 2.69
6315 6411 3.950397 TCAATCACACGAAAGCCCTTAT 58.050 40.909 0.00 0.00 0.00 1.73
6316 6412 4.331968 TCAATCACACGAAAGCCCTTATT 58.668 39.130 0.00 0.00 0.00 1.40
6317 6413 4.764823 TCAATCACACGAAAGCCCTTATTT 59.235 37.500 0.00 0.00 0.00 1.40
6318 6414 4.965119 ATCACACGAAAGCCCTTATTTC 57.035 40.909 0.00 0.00 34.09 2.17
6319 6415 3.745799 TCACACGAAAGCCCTTATTTCA 58.254 40.909 0.00 0.00 36.63 2.69
6320 6416 4.138290 TCACACGAAAGCCCTTATTTCAA 58.862 39.130 0.00 0.00 36.63 2.69
6321 6417 4.764823 TCACACGAAAGCCCTTATTTCAAT 59.235 37.500 0.00 0.00 36.63 2.57
6322 6418 5.095490 CACACGAAAGCCCTTATTTCAATC 58.905 41.667 0.00 0.00 36.63 2.67
6323 6419 4.764823 ACACGAAAGCCCTTATTTCAATCA 59.235 37.500 0.00 0.00 36.63 2.57
6324 6420 5.095490 CACGAAAGCCCTTATTTCAATCAC 58.905 41.667 0.00 0.00 36.63 3.06
6325 6421 4.764823 ACGAAAGCCCTTATTTCAATCACA 59.235 37.500 0.00 0.00 36.63 3.58
6326 6422 5.095490 CGAAAGCCCTTATTTCAATCACAC 58.905 41.667 0.00 0.00 36.63 3.82
6327 6423 4.701956 AAGCCCTTATTTCAATCACACG 57.298 40.909 0.00 0.00 0.00 4.49
6328 6424 3.950397 AGCCCTTATTTCAATCACACGA 58.050 40.909 0.00 0.00 0.00 4.35
6329 6425 4.331968 AGCCCTTATTTCAATCACACGAA 58.668 39.130 0.00 0.00 0.00 3.85
6330 6426 4.764823 AGCCCTTATTTCAATCACACGAAA 59.235 37.500 0.00 0.00 35.70 3.46
6331 6427 5.095490 GCCCTTATTTCAATCACACGAAAG 58.905 41.667 0.00 0.00 34.78 2.62
6422 6518 2.564504 AGCTGCTGAAGTGTCATCAGTA 59.435 45.455 0.00 0.82 45.70 2.74
6473 6569 4.031426 CGTCTTAGAACTTGGTAATGCGTC 59.969 45.833 0.00 0.00 0.00 5.19
6494 6593 3.826157 TCCCTTTGATTTTGCAGACGATT 59.174 39.130 0.00 0.00 0.00 3.34
6495 6594 4.082787 TCCCTTTGATTTTGCAGACGATTC 60.083 41.667 0.00 0.00 0.00 2.52
6496 6595 4.082571 CCCTTTGATTTTGCAGACGATTCT 60.083 41.667 0.00 0.00 0.00 2.40
6550 6649 3.876274 TCATCTTCTGAAAGGACCTCG 57.124 47.619 0.00 0.00 33.03 4.63
6667 6766 4.136796 TCTGTTTCTTGTTCCACATCCAG 58.863 43.478 0.00 0.00 0.00 3.86
6671 6770 1.926511 CTTGTTCCACATCCAGGCGC 61.927 60.000 0.00 0.00 0.00 6.53
6731 6830 1.806623 CGGCCTCTGATTCCTTAACCG 60.807 57.143 0.00 0.00 0.00 4.44
6837 6936 2.143122 GACATGGTCGCTGAAGTTCAA 58.857 47.619 7.06 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.165035 CGGAGGGAGTAGTATAGAACTTATAAG 57.835 40.741 11.05 11.05 39.80 1.73
23 24 8.664079 ACGGAGGGAGTAGTATAGAACTTATAA 58.336 37.037 0.00 0.00 39.80 0.98
24 25 8.212259 ACGGAGGGAGTAGTATAGAACTTATA 57.788 38.462 0.00 0.00 39.80 0.98
25 26 7.089106 ACGGAGGGAGTAGTATAGAACTTAT 57.911 40.000 0.00 0.00 39.80 1.73
26 27 6.506538 ACGGAGGGAGTAGTATAGAACTTA 57.493 41.667 0.00 0.00 39.80 2.24
27 28 5.385628 ACGGAGGGAGTAGTATAGAACTT 57.614 43.478 0.00 0.00 39.80 2.66
28 29 5.375773 GAACGGAGGGAGTAGTATAGAACT 58.624 45.833 0.00 0.00 42.62 3.01
29 30 4.518590 GGAACGGAGGGAGTAGTATAGAAC 59.481 50.000 0.00 0.00 0.00 3.01
30 31 4.166725 TGGAACGGAGGGAGTAGTATAGAA 59.833 45.833 0.00 0.00 0.00 2.10
31 32 3.718434 TGGAACGGAGGGAGTAGTATAGA 59.282 47.826 0.00 0.00 0.00 1.98
32 33 4.096190 TGGAACGGAGGGAGTAGTATAG 57.904 50.000 0.00 0.00 0.00 1.31
33 34 4.524802 TTGGAACGGAGGGAGTAGTATA 57.475 45.455 0.00 0.00 0.00 1.47
34 35 3.393426 TTGGAACGGAGGGAGTAGTAT 57.607 47.619 0.00 0.00 0.00 2.12
35 36 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
36 37 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
37 38 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
38 39 5.703730 AATATTTTGGAACGGAGGGAGTA 57.296 39.130 0.00 0.00 0.00 2.59
39 40 4.586306 AATATTTTGGAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
40 41 4.097892 CCAAATATTTTGGAACGGAGGGAG 59.902 45.833 12.64 0.00 42.06 4.30
41 42 4.020543 CCAAATATTTTGGAACGGAGGGA 58.979 43.478 12.64 0.00 42.06 4.20
42 43 3.430236 GCCAAATATTTTGGAACGGAGGG 60.430 47.826 20.36 5.53 42.06 4.30
43 44 3.447229 AGCCAAATATTTTGGAACGGAGG 59.553 43.478 20.36 6.11 42.06 4.30
44 45 4.718940 AGCCAAATATTTTGGAACGGAG 57.281 40.909 20.36 0.00 42.06 4.63
45 46 5.245075 AGAAAGCCAAATATTTTGGAACGGA 59.755 36.000 20.36 0.00 42.06 4.69
46 47 5.478407 AGAAAGCCAAATATTTTGGAACGG 58.522 37.500 20.36 7.84 42.06 4.44
47 48 7.535139 TCTAGAAAGCCAAATATTTTGGAACG 58.465 34.615 20.36 3.85 42.06 3.95
48 49 8.739972 TCTCTAGAAAGCCAAATATTTTGGAAC 58.260 33.333 20.36 5.99 42.06 3.62
49 50 8.877864 TCTCTAGAAAGCCAAATATTTTGGAA 57.122 30.769 20.36 0.69 42.06 3.53
50 51 9.479549 AATCTCTAGAAAGCCAAATATTTTGGA 57.520 29.630 20.36 0.51 42.06 3.53
58 59 8.255905 CCATTTGAAATCTCTAGAAAGCCAAAT 58.744 33.333 11.05 11.05 0.00 2.32
59 60 7.451255 TCCATTTGAAATCTCTAGAAAGCCAAA 59.549 33.333 0.00 2.21 0.00 3.28
60 61 6.947733 TCCATTTGAAATCTCTAGAAAGCCAA 59.052 34.615 0.00 0.00 0.00 4.52
61 62 6.375455 GTCCATTTGAAATCTCTAGAAAGCCA 59.625 38.462 0.00 0.00 0.00 4.75
62 63 6.601217 AGTCCATTTGAAATCTCTAGAAAGCC 59.399 38.462 0.00 0.00 0.00 4.35
63 64 7.622893 AGTCCATTTGAAATCTCTAGAAAGC 57.377 36.000 0.00 0.00 0.00 3.51
64 65 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
65 66 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
66 67 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
67 68 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
68 69 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
69 70 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
70 71 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
71 72 7.552687 TGTATGTGGTAGTCCATTTGAAATCTC 59.447 37.037 0.00 0.00 46.20 2.75
72 73 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
73 74 7.552687 TCTGTATGTGGTAGTCCATTTGAAATC 59.447 37.037 0.00 0.00 46.20 2.17
74 75 7.402054 TCTGTATGTGGTAGTCCATTTGAAAT 58.598 34.615 0.00 0.00 46.20 2.17
75 76 6.774673 TCTGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
76 77 6.367374 TCTGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
77 78 6.070251 ACATCTGTATGTGGTAGTCCATTTGA 60.070 38.462 0.00 0.00 44.79 2.69
78 79 6.115446 ACATCTGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
79 80 6.313519 ACATCTGTATGTGGTAGTCCATTT 57.686 37.500 0.00 0.00 44.79 2.32
80 81 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
81 82 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
82 83 9.990868 ATATATACATCTGTATGTGGTAGTCCA 57.009 33.333 12.10 0.00 45.99 4.02
118 119 9.624373 AGAGCAAAATGAATGAATCTACACTAT 57.376 29.630 0.00 0.00 0.00 2.12
119 120 8.886719 CAGAGCAAAATGAATGAATCTACACTA 58.113 33.333 0.00 0.00 0.00 2.74
120 121 7.392673 ACAGAGCAAAATGAATGAATCTACACT 59.607 33.333 0.00 0.00 0.00 3.55
121 122 7.533426 ACAGAGCAAAATGAATGAATCTACAC 58.467 34.615 0.00 0.00 0.00 2.90
122 123 7.692460 ACAGAGCAAAATGAATGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
123 124 9.661187 CATACAGAGCAAAATGAATGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
124 125 9.399797 ACATACAGAGCAAAATGAATGAATCTA 57.600 29.630 0.00 0.00 0.00 1.98
125 126 8.289939 ACATACAGAGCAAAATGAATGAATCT 57.710 30.769 0.00 0.00 0.00 2.40
126 127 9.661187 CTACATACAGAGCAAAATGAATGAATC 57.339 33.333 0.00 0.00 0.00 2.52
127 128 9.182214 ACTACATACAGAGCAAAATGAATGAAT 57.818 29.630 0.00 0.00 0.00 2.57
128 129 8.565896 ACTACATACAGAGCAAAATGAATGAA 57.434 30.769 0.00 0.00 0.00 2.57
129 130 7.823799 TGACTACATACAGAGCAAAATGAATGA 59.176 33.333 0.00 0.00 0.00 2.57
130 131 7.907045 GTGACTACATACAGAGCAAAATGAATG 59.093 37.037 0.00 0.00 0.00 2.67
131 132 7.826252 AGTGACTACATACAGAGCAAAATGAAT 59.174 33.333 0.00 0.00 0.00 2.57
132 133 7.161404 AGTGACTACATACAGAGCAAAATGAA 58.839 34.615 0.00 0.00 0.00 2.57
133 134 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
134 135 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
135 136 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
136 137 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
137 138 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
138 139 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
139 140 5.468540 AACAAGTGACTACATACAGAGCA 57.531 39.130 0.00 0.00 0.00 4.26
140 141 7.884816 TTTAACAAGTGACTACATACAGAGC 57.115 36.000 0.00 0.00 0.00 4.09
172 173 9.503427 CCATCCGTTTCTAAATATTTGTCTTTC 57.497 33.333 11.05 0.00 0.00 2.62
173 174 9.238368 TCCATCCGTTTCTAAATATTTGTCTTT 57.762 29.630 11.05 0.00 0.00 2.52
174 175 8.801882 TCCATCCGTTTCTAAATATTTGTCTT 57.198 30.769 11.05 0.00 0.00 3.01
175 176 8.047310 ACTCCATCCGTTTCTAAATATTTGTCT 58.953 33.333 11.05 0.00 0.00 3.41
176 177 8.209917 ACTCCATCCGTTTCTAAATATTTGTC 57.790 34.615 11.05 0.00 0.00 3.18
177 178 9.106070 GTACTCCATCCGTTTCTAAATATTTGT 57.894 33.333 11.05 0.00 0.00 2.83
178 179 8.273557 CGTACTCCATCCGTTTCTAAATATTTG 58.726 37.037 11.05 1.65 0.00 2.32
179 180 7.983484 ACGTACTCCATCCGTTTCTAAATATTT 59.017 33.333 5.89 5.89 0.00 1.40
180 181 7.495055 ACGTACTCCATCCGTTTCTAAATATT 58.505 34.615 0.00 0.00 0.00 1.28
181 182 7.047460 ACGTACTCCATCCGTTTCTAAATAT 57.953 36.000 0.00 0.00 0.00 1.28
182 183 6.455360 ACGTACTCCATCCGTTTCTAAATA 57.545 37.500 0.00 0.00 0.00 1.40
183 184 5.334724 ACGTACTCCATCCGTTTCTAAAT 57.665 39.130 0.00 0.00 0.00 1.40
184 185 4.789012 ACGTACTCCATCCGTTTCTAAA 57.211 40.909 0.00 0.00 0.00 1.85
185 186 6.267817 CAATACGTACTCCATCCGTTTCTAA 58.732 40.000 0.00 0.00 36.12 2.10
186 187 5.221106 CCAATACGTACTCCATCCGTTTCTA 60.221 44.000 0.00 0.00 36.12 2.10
187 188 4.441079 CCAATACGTACTCCATCCGTTTCT 60.441 45.833 0.00 0.00 36.12 2.52
188 189 3.800506 CCAATACGTACTCCATCCGTTTC 59.199 47.826 0.00 0.00 36.12 2.78
189 190 3.196254 ACCAATACGTACTCCATCCGTTT 59.804 43.478 0.00 0.00 36.12 3.60
190 191 2.762327 ACCAATACGTACTCCATCCGTT 59.238 45.455 0.00 0.00 36.12 4.44
191 192 2.100252 CACCAATACGTACTCCATCCGT 59.900 50.000 0.00 0.00 38.53 4.69
192 193 2.545113 CCACCAATACGTACTCCATCCG 60.545 54.545 0.00 0.00 0.00 4.18
193 194 2.696707 TCCACCAATACGTACTCCATCC 59.303 50.000 0.00 0.00 0.00 3.51
194 195 4.602340 ATCCACCAATACGTACTCCATC 57.398 45.455 0.00 0.00 0.00 3.51
195 196 5.123227 CAAATCCACCAATACGTACTCCAT 58.877 41.667 0.00 0.00 0.00 3.41
196 197 4.020039 ACAAATCCACCAATACGTACTCCA 60.020 41.667 0.00 0.00 0.00 3.86
197 198 4.331717 CACAAATCCACCAATACGTACTCC 59.668 45.833 0.00 0.00 0.00 3.85
198 199 5.063060 GTCACAAATCCACCAATACGTACTC 59.937 44.000 0.00 0.00 0.00 2.59
199 200 4.933400 GTCACAAATCCACCAATACGTACT 59.067 41.667 0.00 0.00 0.00 2.73
200 201 4.093850 GGTCACAAATCCACCAATACGTAC 59.906 45.833 0.00 0.00 0.00 3.67
201 202 4.255301 GGTCACAAATCCACCAATACGTA 58.745 43.478 0.00 0.00 0.00 3.57
202 203 3.078837 GGTCACAAATCCACCAATACGT 58.921 45.455 0.00 0.00 0.00 3.57
203 204 2.095213 CGGTCACAAATCCACCAATACG 59.905 50.000 0.00 0.00 0.00 3.06
209 210 2.076863 CTCTTCGGTCACAAATCCACC 58.923 52.381 0.00 0.00 0.00 4.61
365 366 7.972527 TGTGATTCACAAAATTCAAAAAGGTG 58.027 30.769 16.95 0.00 41.69 4.00
371 372 7.701924 GTGACTCTGTGATTCACAAAATTCAAA 59.298 33.333 19.44 0.16 44.08 2.69
469 470 4.590222 ACTGCCATCATCAAACTCCTTTTT 59.410 37.500 0.00 0.00 0.00 1.94
480 482 6.602278 AGTACTACTACTACTGCCATCATCA 58.398 40.000 0.00 0.00 30.81 3.07
702 715 8.237811 AGTTTGTGGAGAAAACATTTACATCT 57.762 30.769 2.28 0.00 39.49 2.90
753 766 9.088987 TCTGTTCCATAATGTAGTGCATATAGA 57.911 33.333 0.00 0.00 36.67 1.98
754 767 9.363763 CTCTGTTCCATAATGTAGTGCATATAG 57.636 37.037 0.00 0.00 36.67 1.31
755 768 8.314021 CCTCTGTTCCATAATGTAGTGCATATA 58.686 37.037 0.00 0.00 36.67 0.86
773 787 6.593807 TGACTCTATAGTACTCCCTCTGTTC 58.406 44.000 0.00 0.00 35.56 3.18
849 863 3.489229 GCTTCCGGTTGCCTATTTTCATC 60.489 47.826 0.00 0.00 0.00 2.92
956 974 4.263639 TGAGAATTCCAAATGCAGACTCCT 60.264 41.667 0.65 0.00 0.00 3.69
957 975 4.012374 TGAGAATTCCAAATGCAGACTCC 58.988 43.478 0.65 0.00 0.00 3.85
958 976 5.633830 TTGAGAATTCCAAATGCAGACTC 57.366 39.130 0.65 0.00 0.00 3.36
959 977 6.409524 TTTTGAGAATTCCAAATGCAGACT 57.590 33.333 17.35 0.00 34.02 3.24
986 1004 3.575687 CCTCCAAATGCAGACTCCTTTTT 59.424 43.478 0.00 0.00 0.00 1.94
987 1005 3.160269 CCTCCAAATGCAGACTCCTTTT 58.840 45.455 0.00 0.00 0.00 2.27
988 1006 2.556114 CCCTCCAAATGCAGACTCCTTT 60.556 50.000 0.00 0.00 0.00 3.11
989 1007 1.005215 CCCTCCAAATGCAGACTCCTT 59.995 52.381 0.00 0.00 0.00 3.36
990 1008 0.622665 CCCTCCAAATGCAGACTCCT 59.377 55.000 0.00 0.00 0.00 3.69
1100 1118 2.626743 TCCTCTCCGTCGTTTTCTTCTT 59.373 45.455 0.00 0.00 0.00 2.52
1108 1126 2.341101 ACGCATCCTCTCCGTCGTT 61.341 57.895 0.00 0.00 0.00 3.85
1308 1326 1.379642 CCCAGCTCGAAAATCAGCCC 61.380 60.000 0.00 0.00 36.17 5.19
1320 1338 1.952296 CTATTCATGCAACCCCAGCTC 59.048 52.381 0.00 0.00 0.00 4.09
1387 1405 2.119655 GCCCAGATCTGCAAGCCAG 61.120 63.158 17.76 1.57 43.17 4.85
1520 1538 9.065871 GGCATTGAAGATATTATGAAATTACGC 57.934 33.333 0.00 0.00 0.00 4.42
1545 1563 2.159819 ATAGATGCCGCCTACGCTGG 62.160 60.000 0.00 0.00 38.22 4.85
1715 1734 3.431673 TTGAACATACCATCAGCACCA 57.568 42.857 0.00 0.00 0.00 4.17
1752 1771 4.794655 GCCTTCCATAACAGCGAAACAAAA 60.795 41.667 0.00 0.00 0.00 2.44
1796 1815 8.773645 GGGAACAACAAATAAATTTCTTCCTTG 58.226 33.333 0.00 0.00 0.00 3.61
1797 1816 8.490311 TGGGAACAACAAATAAATTTCTTCCTT 58.510 29.630 0.00 0.00 37.44 3.36
1813 1833 0.616371 CCCTCCGTATGGGAACAACA 59.384 55.000 0.00 0.00 46.61 3.33
1839 1859 8.402798 TCTATTGTGTTGGTTATGTTGTGAAT 57.597 30.769 0.00 0.00 0.00 2.57
1942 1962 3.181458 CCAAGTGGTACTGGTACACAAGT 60.181 47.826 12.14 0.00 37.78 3.16
1952 1972 7.999153 GCAAATGCTCAACCAAGTGGTACTG 62.999 48.000 2.75 0.00 42.42 2.74
1955 1975 2.295909 GCAAATGCTCAACCAAGTGGTA 59.704 45.455 2.75 0.00 42.42 3.25
1975 1995 4.734917 AGTTGTACTTCTACGACAGATGC 58.265 43.478 0.00 0.00 39.11 3.91
1983 2003 5.792468 GGACGAGTTAAGTTGTACTTCTACG 59.208 44.000 5.72 0.00 39.51 3.51
2053 2073 5.396436 GCCAGTTTACATACCTAGGACACAT 60.396 44.000 17.98 0.00 0.00 3.21
2077 2097 6.018425 CCATCAGATGTCAATTACCGAAGAAG 60.018 42.308 9.64 0.00 0.00 2.85
2162 2182 6.603224 ACCCTAACTTGTACAACCAAACATA 58.397 36.000 3.59 0.00 0.00 2.29
2197 2218 6.831868 AGCTTTCCAGTTTGGTCTTAGTTTTA 59.168 34.615 0.00 0.00 39.03 1.52
2275 2296 5.782925 ACCTAACTATTGAGAGATGGGAGT 58.217 41.667 0.00 0.00 0.00 3.85
2363 2384 9.547753 TGAAATATTAGAGTGCCTTGAGTTATC 57.452 33.333 0.00 0.00 0.00 1.75
2393 2414 4.418392 GTGTGTGAAGCATTTCATGATCC 58.582 43.478 0.00 0.00 44.62 3.36
2751 2774 1.199789 TGCAAACATCGAATCACCTGC 59.800 47.619 0.00 0.00 0.00 4.85
2965 2988 4.037923 TGGCAAACAAAGTTCATCTTCTCC 59.962 41.667 0.00 0.00 35.02 3.71
3031 3054 7.586300 CAGTTAAAGTACATCAAACGAACCTTG 59.414 37.037 0.00 0.00 0.00 3.61
3041 3064 5.414454 GGATGTGGCAGTTAAAGTACATCAA 59.586 40.000 14.67 0.00 43.64 2.57
3215 3238 7.650834 AATTGTGTGCACATGGTAAAATAAC 57.349 32.000 24.69 5.75 41.52 1.89
3227 3250 4.141287 AGGTAAGCTAAATTGTGTGCACA 58.859 39.130 17.42 17.42 39.98 4.57
3264 3287 5.241728 AGAGAGCAAAACTTGTTAATGGGAC 59.758 40.000 0.00 0.00 0.00 4.46
3362 3386 9.802039 AAGTATTAAATGTCCTACCTTGACAAA 57.198 29.630 0.00 0.00 45.15 2.83
3434 3458 1.544691 GGTACCAGCTGAACTCGAAGA 59.455 52.381 17.39 0.00 0.00 2.87
3438 3462 1.816835 TGTAGGTACCAGCTGAACTCG 59.183 52.381 17.39 0.00 0.00 4.18
3487 3511 7.930865 AGGAACAAATCAGTGATAGAGCTTATC 59.069 37.037 5.94 0.00 0.00 1.75
3538 3562 5.757850 ACAGCCTTCTTCAACTTTACTTG 57.242 39.130 0.00 0.00 0.00 3.16
3571 3595 4.060038 TCTAATTTCCAGAAGCGCCTAG 57.940 45.455 2.29 0.00 0.00 3.02
3572 3596 4.689612 ATCTAATTTCCAGAAGCGCCTA 57.310 40.909 2.29 0.00 0.00 3.93
3594 3618 7.750229 ACAGAATTTTAGATGAAGCAAGTCA 57.250 32.000 0.00 0.00 0.00 3.41
3613 3637 9.832445 GAACATTAGTTCCATCCTATAACAGAA 57.168 33.333 0.00 0.00 46.68 3.02
3635 3659 5.552870 AAGAGCTCTGAAAGGTTAGAACA 57.447 39.130 19.06 0.00 35.33 3.18
3648 3672 4.751767 ACTAGGGAATCAAAGAGCTCTG 57.248 45.455 19.06 6.84 0.00 3.35
3921 3984 2.583441 CCGTGAGAACCTCCTGGCA 61.583 63.158 0.00 0.00 36.63 4.92
3924 3987 0.393077 AACACCGTGAGAACCTCCTG 59.607 55.000 5.28 0.00 0.00 3.86
4047 4110 4.868171 GCACTTTCGGTGTCATAGACATAA 59.132 41.667 2.90 0.00 44.63 1.90
4188 4252 4.476846 TCCAGTAGGAATGCCAAATAGGAA 59.523 41.667 0.00 0.00 42.23 3.36
4190 4254 4.437682 TCCAGTAGGAATGCCAAATAGG 57.562 45.455 0.00 0.00 42.23 2.57
4222 4286 4.952335 ACCTGGCAGAATAAGGAAAAGATG 59.048 41.667 17.94 0.00 34.97 2.90
4331 4395 2.355010 AAATACCTGAGAGGGCATGC 57.645 50.000 9.90 9.90 40.58 4.06
4385 4449 2.283173 CTGCAAACCACCCTCCCC 60.283 66.667 0.00 0.00 0.00 4.81
4393 4457 5.129634 TGATAAGAAACTGTCTGCAAACCA 58.870 37.500 0.00 0.00 36.40 3.67
4575 4641 0.325296 TCAACTCCAGGGCCGACTAT 60.325 55.000 0.00 0.00 0.00 2.12
4648 4714 5.095490 GTCTTAAACCATGAATCAAAGGCG 58.905 41.667 0.00 0.00 0.00 5.52
4649 4715 6.024552 TGTCTTAAACCATGAATCAAAGGC 57.975 37.500 0.00 0.00 0.00 4.35
4796 4862 2.069273 GTGACATTTCCCTCTGTGACG 58.931 52.381 0.00 0.00 0.00 4.35
4799 4865 2.163010 GCATGTGACATTTCCCTCTGTG 59.837 50.000 0.00 0.00 0.00 3.66
4829 4895 3.772572 TGCTATCTACAGTTGGTGGCTTA 59.227 43.478 5.29 0.00 0.00 3.09
4841 4907 6.239217 ACATCAACTTCCATGCTATCTACA 57.761 37.500 0.00 0.00 0.00 2.74
4866 4932 6.349363 CCTGACTTCTTAATTTTGCAGGTACC 60.349 42.308 2.73 2.73 37.48 3.34
4898 4964 1.045407 GAGGTGTCACTGTACCCACA 58.955 55.000 2.35 0.00 37.70 4.17
4960 5026 4.041049 TGCAACACAAGTAAATTGCTTCG 58.959 39.130 9.02 0.00 46.06 3.79
5001 5067 8.268850 ACACAAGATGTCATAATCTTAACCAC 57.731 34.615 0.00 0.00 43.50 4.16
5051 5117 7.639461 GCCACAAACAAAATTTCATACACTTTG 59.361 33.333 0.00 0.00 34.04 2.77
5052 5118 7.201688 GGCCACAAACAAAATTTCATACACTTT 60.202 33.333 0.00 0.00 0.00 2.66
5060 5127 4.521146 ACATGGCCACAAACAAAATTTCA 58.479 34.783 8.16 0.00 0.00 2.69
5076 5143 1.065564 AGAGCTGAAGGAGAACATGGC 60.066 52.381 0.00 0.00 0.00 4.40
5239 5331 3.924686 CGACTAATGTGTGTGGTAGGAAC 59.075 47.826 0.00 0.00 0.00 3.62
5256 5348 1.948104 GCATTGTGTATGGCCGACTA 58.052 50.000 8.90 0.00 34.66 2.59
5462 5554 6.183360 GGAACAAAGATAGCCAATGTAAGCAT 60.183 38.462 0.00 0.00 36.80 3.79
5466 5558 9.474313 AATAAGGAACAAAGATAGCCAATGTAA 57.526 29.630 0.00 0.00 0.00 2.41
5490 5582 0.823356 ACAGGGAAAGTGCGTGCAAT 60.823 50.000 0.00 0.00 0.00 3.56
5496 5588 3.726517 CGCCACAGGGAAAGTGCG 61.727 66.667 0.00 0.00 35.69 5.34
5515 5607 3.644966 AGAATAACCATGAAAGGGCGA 57.355 42.857 0.00 0.00 45.79 5.54
5572 5664 2.975732 TTGGCTTTGCATGTTCACAA 57.024 40.000 0.00 0.00 0.00 3.33
5611 5703 0.963962 CTTTGCTGGCACCAACATCT 59.036 50.000 0.00 0.00 0.00 2.90
5632 5724 0.895530 TAGGACTGGCTTCCGTCTTG 59.104 55.000 0.74 0.00 41.04 3.02
5671 5763 2.772191 TGGGCTGACACTGGTGGT 60.772 61.111 5.70 0.00 34.19 4.16
5888 5980 4.370364 AAAATTGATCCATACGTGCCAC 57.630 40.909 0.00 0.00 0.00 5.01
6043 6135 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6044 6136 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6045 6137 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6046 6138 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6047 6139 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
6048 6140 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
6049 6141 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
6050 6142 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
6051 6143 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
6052 6144 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
6053 6145 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
6054 6146 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
6055 6147 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
6056 6148 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
6057 6149 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
6058 6150 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
6059 6151 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
6060 6152 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
6061 6153 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
6062 6154 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
6063 6155 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
6064 6156 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
6065 6157 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
6066 6158 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
6067 6159 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
6068 6160 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
6093 6185 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
6094 6186 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
6095 6187 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
6096 6188 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
6097 6189 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
6098 6190 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
6099 6191 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
6100 6192 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
6101 6193 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
6102 6194 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
6103 6195 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
6104 6196 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
6105 6197 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
6106 6198 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
6107 6199 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
6108 6200 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
6109 6201 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
6110 6202 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
6111 6203 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
6112 6204 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
6113 6205 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
6114 6206 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
6115 6207 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
6116 6208 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
6117 6209 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
6118 6210 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
6119 6211 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
6120 6212 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
6121 6213 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6122 6214 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6123 6215 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6124 6216 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6125 6217 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6126 6218 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6127 6219 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6128 6220 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
6129 6221 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
6130 6222 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
6131 6223 2.092212 AGTATTACTCCCTCCGTTCGGA 60.092 50.000 13.34 13.34 0.00 4.55
6132 6224 2.305009 AGTATTACTCCCTCCGTTCGG 58.695 52.381 4.74 4.74 0.00 4.30
6133 6225 5.702349 ATAAGTATTACTCCCTCCGTTCG 57.298 43.478 0.00 0.00 30.46 3.95
6134 6226 6.148264 CGAATAAGTATTACTCCCTCCGTTC 58.852 44.000 0.00 0.00 30.46 3.95
6135 6227 5.508657 GCGAATAAGTATTACTCCCTCCGTT 60.509 44.000 0.00 0.00 30.46 4.44
6136 6228 4.022503 GCGAATAAGTATTACTCCCTCCGT 60.023 45.833 0.00 0.00 30.46 4.69
6137 6229 4.217983 AGCGAATAAGTATTACTCCCTCCG 59.782 45.833 0.00 0.16 30.46 4.63
6138 6230 5.725325 AGCGAATAAGTATTACTCCCTCC 57.275 43.478 0.00 0.00 30.46 4.30
6139 6231 7.391275 AGACTAGCGAATAAGTATTACTCCCTC 59.609 40.741 0.00 0.00 30.46 4.30
6140 6232 7.232910 AGACTAGCGAATAAGTATTACTCCCT 58.767 38.462 0.00 0.00 30.46 4.20
6141 6233 7.451501 AGACTAGCGAATAAGTATTACTCCC 57.548 40.000 0.00 0.00 30.46 4.30
6142 6234 9.747293 AAAAGACTAGCGAATAAGTATTACTCC 57.253 33.333 0.00 0.00 30.46 3.85
6147 6239 9.088512 CAGTGAAAAGACTAGCGAATAAGTATT 57.911 33.333 0.00 0.00 0.00 1.89
6148 6240 8.251721 ACAGTGAAAAGACTAGCGAATAAGTAT 58.748 33.333 0.00 0.00 0.00 2.12
6259 6355 4.398988 CGGAGACCCAATTTGATTGAATCA 59.601 41.667 3.29 3.29 42.83 2.57
6309 6405 6.494893 TCTTTCGTGTGATTGAAATAAGGG 57.505 37.500 0.00 0.00 33.93 3.95
6310 6406 7.806690 TCTTCTTTCGTGTGATTGAAATAAGG 58.193 34.615 10.77 0.00 38.14 2.69
6313 6409 9.430623 TGTATCTTCTTTCGTGTGATTGAAATA 57.569 29.630 0.00 0.00 33.93 1.40
6314 6410 8.322906 TGTATCTTCTTTCGTGTGATTGAAAT 57.677 30.769 0.00 0.00 33.93 2.17
6315 6411 7.441157 ACTGTATCTTCTTTCGTGTGATTGAAA 59.559 33.333 0.00 0.00 33.38 2.69
6316 6412 6.929049 ACTGTATCTTCTTTCGTGTGATTGAA 59.071 34.615 0.00 0.00 0.00 2.69
6317 6413 6.455647 ACTGTATCTTCTTTCGTGTGATTGA 58.544 36.000 0.00 0.00 0.00 2.57
6318 6414 6.587990 AGACTGTATCTTCTTTCGTGTGATTG 59.412 38.462 0.00 0.00 31.62 2.67
6319 6415 6.692486 AGACTGTATCTTCTTTCGTGTGATT 58.308 36.000 0.00 0.00 31.62 2.57
6320 6416 6.274157 AGACTGTATCTTCTTTCGTGTGAT 57.726 37.500 0.00 0.00 31.62 3.06
6321 6417 5.707242 AGACTGTATCTTCTTTCGTGTGA 57.293 39.130 0.00 0.00 31.62 3.58
6422 6518 0.333993 ATCTGCCCAAGATTGCCTGT 59.666 50.000 0.00 0.00 43.52 4.00
6473 6569 3.855689 ATCGTCTGCAAAATCAAAGGG 57.144 42.857 0.00 0.00 0.00 3.95
6494 6593 3.845781 AGAGGCAGACAACAAAGAAGA 57.154 42.857 0.00 0.00 0.00 2.87
6495 6594 3.879295 TGAAGAGGCAGACAACAAAGAAG 59.121 43.478 0.00 0.00 0.00 2.85
6496 6595 3.884895 TGAAGAGGCAGACAACAAAGAA 58.115 40.909 0.00 0.00 0.00 2.52
6550 6649 2.107141 CCCCACGGCGAGAAGATC 59.893 66.667 16.62 0.00 0.00 2.75
6667 6766 4.043200 GCAGGAAACCACAGCGCC 62.043 66.667 2.29 0.00 0.00 6.53
6671 6770 1.799258 GCCACAGCAGGAAACCACAG 61.799 60.000 0.00 0.00 39.53 3.66
6731 6830 1.149148 GACGTCAAGTTCCAAGAGGC 58.851 55.000 11.55 0.00 33.74 4.70
6793 6892 1.024046 TCCACAAATCGGCCATGTCG 61.024 55.000 2.24 0.00 0.00 4.35
6837 6936 3.185455 ACAGAAAGGAAGGCAGAGGTAT 58.815 45.455 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.