Multiple sequence alignment - TraesCS7B01G223600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G223600 chr7B 100.000 2803 0 0 1 2803 422903350 422900548 0.000000e+00 5177.0
1 TraesCS7B01G223600 chr7B 93.347 1518 47 21 1321 2803 641027215 641025717 0.000000e+00 2194.0
2 TraesCS7B01G223600 chr7B 88.830 1325 51 22 954 2194 696630416 696629105 0.000000e+00 1537.0
3 TraesCS7B01G223600 chr7B 91.569 854 27 15 491 1337 641028050 641027235 0.000000e+00 1136.0
4 TraesCS7B01G223600 chr7B 98.984 492 5 0 1 492 421069803 421070294 0.000000e+00 881.0
5 TraesCS7B01G223600 chr7B 92.991 585 16 6 1995 2554 696629244 696628660 0.000000e+00 830.0
6 TraesCS7B01G223600 chr7B 92.211 475 17 7 491 965 696630813 696630359 0.000000e+00 654.0
7 TraesCS7B01G223600 chr7B 85.864 382 31 11 492 859 746780975 746781347 4.380000e-103 385.0
8 TraesCS7B01G223600 chr7B 96.923 195 6 0 491 685 641000388 641000582 7.490000e-86 327.0
9 TraesCS7B01G223600 chr7B 100.000 39 0 0 1342 1380 696630109 696630071 3.870000e-09 73.1
10 TraesCS7B01G223600 chr3D 89.756 1884 79 39 997 2802 577049268 577047421 0.000000e+00 2305.0
11 TraesCS7B01G223600 chr3D 83.673 490 41 11 490 965 577049731 577049267 2.580000e-115 425.0
12 TraesCS7B01G223600 chr3D 100.000 39 0 0 1342 1380 577049000 577048962 3.870000e-09 73.1
13 TraesCS7B01G223600 chr3A 89.299 1925 72 80 478 2309 8870099 8871982 0.000000e+00 2290.0
14 TraesCS7B01G223600 chr3A 88.535 1884 91 50 997 2802 505169988 505171824 0.000000e+00 2167.0
15 TraesCS7B01G223600 chr3A 85.597 486 40 11 492 962 505169516 505169986 1.510000e-132 483.0
16 TraesCS7B01G223600 chr3A 97.938 194 4 0 492 685 8880118 8879925 1.240000e-88 337.0
17 TraesCS7B01G223600 chr2B 89.085 1869 101 39 997 2802 508525285 508527113 0.000000e+00 2226.0
18 TraesCS7B01G223600 chr5B 86.889 1739 129 50 489 2194 538693897 538692225 0.000000e+00 1857.0
19 TraesCS7B01G223600 chr5B 83.343 1771 150 80 488 2194 441651971 441653660 0.000000e+00 1502.0
20 TraesCS7B01G223600 chr5B 94.888 802 20 6 2014 2802 538692346 538691553 0.000000e+00 1234.0
21 TraesCS7B01G223600 chr5B 93.671 79 3 1 1261 1337 538693136 538693058 1.760000e-22 117.0
22 TraesCS7B01G223600 chr6B 90.041 1456 73 29 492 1907 705472577 705471154 0.000000e+00 1820.0
23 TraesCS7B01G223600 chr6B 88.092 1478 87 41 1371 2802 80721985 80723419 0.000000e+00 1672.0
24 TraesCS7B01G223600 chr6B 96.750 800 15 3 2014 2802 705470945 705470146 0.000000e+00 1323.0
25 TraesCS7B01G223600 chr6B 82.920 363 32 16 1851 2194 705471176 705470825 1.630000e-77 300.0
26 TraesCS7B01G223600 chr6B 100.000 39 0 0 1342 1380 705471811 705471773 3.870000e-09 73.1
27 TraesCS7B01G223600 chr6B 96.875 32 0 1 954 985 705472177 705472147 5.000000e-03 52.8
28 TraesCS7B01G223600 chr4B 89.621 1426 66 24 1441 2802 456584316 456585723 0.000000e+00 1738.0
29 TraesCS7B01G223600 chr4B 100.000 39 0 0 1342 1380 456584164 456584202 3.870000e-09 73.1
30 TraesCS7B01G223600 chr2D 88.656 1243 73 38 997 2194 42645022 42643803 0.000000e+00 1452.0
31 TraesCS7B01G223600 chr2D 96.245 799 20 3 2014 2802 42643923 42643125 0.000000e+00 1301.0
32 TraesCS7B01G223600 chr2D 90.506 474 37 4 492 965 42645486 42645021 1.100000e-173 619.0
33 TraesCS7B01G223600 chr2D 85.185 81 6 5 1303 1380 42644793 42644716 8.320000e-11 78.7
34 TraesCS7B01G223600 chr1B 87.826 1265 61 39 1604 2802 557414489 557415726 0.000000e+00 1397.0
35 TraesCS7B01G223600 chr1B 83.304 1150 115 49 492 1613 557412819 557413919 0.000000e+00 989.0
36 TraesCS7B01G223600 chr3B 97.657 811 16 2 1995 2802 446125963 446125153 0.000000e+00 1389.0
37 TraesCS7B01G223600 chr3B 88.804 786 41 14 1444 2194 446126597 446125824 0.000000e+00 920.0
38 TraesCS7B01G223600 chr3B 90.083 484 22 7 490 965 446135776 446135311 3.090000e-169 604.0
39 TraesCS7B01G223600 chr3B 92.151 344 19 5 997 1337 446135312 446134974 1.950000e-131 479.0
40 TraesCS7B01G223600 chr7D 86.506 1082 64 40 955 1984 392267793 392268844 0.000000e+00 1114.0
41 TraesCS7B01G223600 chr7D 87.550 498 36 13 1 484 408021309 408020824 1.130000e-153 553.0
42 TraesCS7B01G223600 chr7D 89.362 47 2 3 953 998 379495335 379495291 3.900000e-04 56.5
43 TraesCS7B01G223600 chr7A 86.508 504 40 17 1 484 467422252 467421757 1.910000e-146 529.0
44 TraesCS7B01G223600 chr7A 86.111 504 42 17 1 484 467852402 467851907 4.140000e-143 518.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G223600 chr7B 422900548 422903350 2802 True 5177.000000 5177 100.0000 1 2803 1 chr7B.!!$R1 2802
1 TraesCS7B01G223600 chr7B 641025717 641028050 2333 True 1665.000000 2194 92.4580 491 2803 2 chr7B.!!$R2 2312
2 TraesCS7B01G223600 chr7B 696628660 696630813 2153 True 773.525000 1537 93.5080 491 2554 4 chr7B.!!$R3 2063
3 TraesCS7B01G223600 chr3D 577047421 577049731 2310 True 934.366667 2305 91.1430 490 2802 3 chr3D.!!$R1 2312
4 TraesCS7B01G223600 chr3A 8870099 8871982 1883 False 2290.000000 2290 89.2990 478 2309 1 chr3A.!!$F1 1831
5 TraesCS7B01G223600 chr3A 505169516 505171824 2308 False 1325.000000 2167 87.0660 492 2802 2 chr3A.!!$F2 2310
6 TraesCS7B01G223600 chr2B 508525285 508527113 1828 False 2226.000000 2226 89.0850 997 2802 1 chr2B.!!$F1 1805
7 TraesCS7B01G223600 chr5B 441651971 441653660 1689 False 1502.000000 1502 83.3430 488 2194 1 chr5B.!!$F1 1706
8 TraesCS7B01G223600 chr5B 538691553 538693897 2344 True 1069.333333 1857 91.8160 489 2802 3 chr5B.!!$R1 2313
9 TraesCS7B01G223600 chr6B 80721985 80723419 1434 False 1672.000000 1672 88.0920 1371 2802 1 chr6B.!!$F1 1431
10 TraesCS7B01G223600 chr6B 705470146 705472577 2431 True 713.780000 1820 93.3172 492 2802 5 chr6B.!!$R1 2310
11 TraesCS7B01G223600 chr4B 456584164 456585723 1559 False 905.550000 1738 94.8105 1342 2802 2 chr4B.!!$F1 1460
12 TraesCS7B01G223600 chr2D 42643125 42645486 2361 True 862.675000 1452 90.1480 492 2802 4 chr2D.!!$R1 2310
13 TraesCS7B01G223600 chr1B 557412819 557415726 2907 False 1193.000000 1397 85.5650 492 2802 2 chr1B.!!$F1 2310
14 TraesCS7B01G223600 chr3B 446125153 446126597 1444 True 1154.500000 1389 93.2305 1444 2802 2 chr3B.!!$R1 1358
15 TraesCS7B01G223600 chr3B 446134974 446135776 802 True 541.500000 604 91.1170 490 1337 2 chr3B.!!$R2 847
16 TraesCS7B01G223600 chr7D 392267793 392268844 1051 False 1114.000000 1114 86.5060 955 1984 1 chr7D.!!$F1 1029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.032615 TCCAAACCAGCCCAACACTT 60.033 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2992 7.538303 AACAACAAATTGGAAGATTCAACAC 57.462 32.0 0.0 0.0 40.42 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.230849 TCTATCCAAATCATGCACAAAAACT 57.769 32.000 0.00 0.00 0.00 2.66
25 26 7.092079 TCTATCCAAATCATGCACAAAAACTG 58.908 34.615 0.00 0.00 0.00 3.16
26 27 5.273674 TCCAAATCATGCACAAAAACTGA 57.726 34.783 0.00 0.00 0.00 3.41
27 28 5.668471 TCCAAATCATGCACAAAAACTGAA 58.332 33.333 0.00 0.00 0.00 3.02
28 29 5.754406 TCCAAATCATGCACAAAAACTGAAG 59.246 36.000 0.00 0.00 0.00 3.02
29 30 5.524646 CCAAATCATGCACAAAAACTGAAGT 59.475 36.000 0.00 0.00 0.00 3.01
30 31 6.037391 CCAAATCATGCACAAAAACTGAAGTT 59.963 34.615 0.00 0.00 40.50 2.66
31 32 6.833342 AATCATGCACAAAAACTGAAGTTC 57.167 33.333 0.00 0.00 37.25 3.01
32 33 5.581126 TCATGCACAAAAACTGAAGTTCT 57.419 34.783 4.17 0.00 37.25 3.01
33 34 6.691754 TCATGCACAAAAACTGAAGTTCTA 57.308 33.333 4.17 0.00 37.25 2.10
34 35 6.728200 TCATGCACAAAAACTGAAGTTCTAG 58.272 36.000 4.17 2.93 37.25 2.43
35 36 6.318648 TCATGCACAAAAACTGAAGTTCTAGT 59.681 34.615 4.17 3.55 37.25 2.57
36 37 7.497579 TCATGCACAAAAACTGAAGTTCTAGTA 59.502 33.333 4.17 0.00 37.25 1.82
37 38 7.246674 TGCACAAAAACTGAAGTTCTAGTAG 57.753 36.000 4.17 0.00 37.25 2.57
38 39 6.821665 TGCACAAAAACTGAAGTTCTAGTAGT 59.178 34.615 4.17 0.00 37.25 2.73
39 40 7.982919 TGCACAAAAACTGAAGTTCTAGTAGTA 59.017 33.333 4.17 0.00 37.25 1.82
40 41 8.823818 GCACAAAAACTGAAGTTCTAGTAGTAA 58.176 33.333 4.17 0.00 37.25 2.24
45 46 9.543783 AAAACTGAAGTTCTAGTAGTAAAGGTG 57.456 33.333 4.17 0.00 37.25 4.00
46 47 6.689554 ACTGAAGTTCTAGTAGTAAAGGTGC 58.310 40.000 4.17 0.00 0.00 5.01
47 48 6.267014 ACTGAAGTTCTAGTAGTAAAGGTGCA 59.733 38.462 4.17 0.00 0.00 4.57
48 49 6.453092 TGAAGTTCTAGTAGTAAAGGTGCAC 58.547 40.000 8.80 8.80 0.00 4.57
49 50 6.041182 TGAAGTTCTAGTAGTAAAGGTGCACA 59.959 38.462 20.43 0.00 0.00 4.57
50 51 6.026947 AGTTCTAGTAGTAAAGGTGCACAG 57.973 41.667 20.43 3.04 0.00 3.66
51 52 5.047235 AGTTCTAGTAGTAAAGGTGCACAGG 60.047 44.000 20.43 0.00 0.00 4.00
52 53 3.767673 TCTAGTAGTAAAGGTGCACAGGG 59.232 47.826 20.43 0.00 0.00 4.45
53 54 2.616524 AGTAGTAAAGGTGCACAGGGA 58.383 47.619 20.43 0.00 0.00 4.20
54 55 3.182152 AGTAGTAAAGGTGCACAGGGAT 58.818 45.455 20.43 2.01 0.00 3.85
55 56 2.496899 AGTAAAGGTGCACAGGGATG 57.503 50.000 20.43 0.00 0.00 3.51
56 57 0.811281 GTAAAGGTGCACAGGGATGC 59.189 55.000 20.43 0.00 46.32 3.91
64 65 2.231215 GCACAGGGATGCAGTACTAG 57.769 55.000 0.00 0.00 45.39 2.57
65 66 1.808133 GCACAGGGATGCAGTACTAGC 60.808 57.143 0.00 2.56 45.39 3.42
66 67 4.373702 GCACAGGGATGCAGTACTAGCA 62.374 54.545 18.15 18.15 45.39 3.49
67 68 2.093500 CACAGGGATGCAGTACTAGCAA 60.093 50.000 19.25 7.57 46.27 3.91
68 69 2.169352 ACAGGGATGCAGTACTAGCAAG 59.831 50.000 19.25 11.71 46.27 4.01
69 70 2.169352 CAGGGATGCAGTACTAGCAAGT 59.831 50.000 19.25 8.10 46.27 3.16
70 71 2.432510 AGGGATGCAGTACTAGCAAGTC 59.567 50.000 19.25 14.34 46.27 3.01
71 72 2.483889 GGGATGCAGTACTAGCAAGTCC 60.484 54.545 20.41 20.41 46.27 3.85
72 73 2.432510 GGATGCAGTACTAGCAAGTCCT 59.567 50.000 20.86 9.65 46.27 3.85
73 74 3.637229 GGATGCAGTACTAGCAAGTCCTA 59.363 47.826 20.86 4.37 46.27 2.94
74 75 4.500035 GGATGCAGTACTAGCAAGTCCTAC 60.500 50.000 20.86 7.81 46.27 3.18
75 76 3.698289 TGCAGTACTAGCAAGTCCTACT 58.302 45.455 14.89 0.00 39.39 2.57
76 77 4.851843 TGCAGTACTAGCAAGTCCTACTA 58.148 43.478 14.89 0.00 39.39 1.82
77 78 4.882427 TGCAGTACTAGCAAGTCCTACTAG 59.118 45.833 14.89 0.00 39.39 2.57
78 79 4.261280 GCAGTACTAGCAAGTCCTACTAGC 60.261 50.000 11.05 0.00 37.50 3.42
79 80 4.882427 CAGTACTAGCAAGTCCTACTAGCA 59.118 45.833 0.00 0.00 37.50 3.49
80 81 5.357314 CAGTACTAGCAAGTCCTACTAGCAA 59.643 44.000 0.00 0.00 37.50 3.91
81 82 5.950549 AGTACTAGCAAGTCCTACTAGCAAA 59.049 40.000 0.00 0.00 37.50 3.68
82 83 5.331876 ACTAGCAAGTCCTACTAGCAAAG 57.668 43.478 0.00 0.00 37.50 2.77
83 84 5.017490 ACTAGCAAGTCCTACTAGCAAAGA 58.983 41.667 0.00 0.00 37.50 2.52
84 85 5.659079 ACTAGCAAGTCCTACTAGCAAAGAT 59.341 40.000 0.00 0.00 37.50 2.40
85 86 4.764172 AGCAAGTCCTACTAGCAAAGATG 58.236 43.478 0.00 0.00 0.00 2.90
86 87 4.467795 AGCAAGTCCTACTAGCAAAGATGA 59.532 41.667 0.00 0.00 0.00 2.92
87 88 5.046304 AGCAAGTCCTACTAGCAAAGATGAA 60.046 40.000 0.00 0.00 0.00 2.57
88 89 5.064071 GCAAGTCCTACTAGCAAAGATGAAC 59.936 44.000 0.00 0.00 0.00 3.18
89 90 6.166279 CAAGTCCTACTAGCAAAGATGAACA 58.834 40.000 0.00 0.00 0.00 3.18
90 91 5.971763 AGTCCTACTAGCAAAGATGAACAG 58.028 41.667 0.00 0.00 0.00 3.16
91 92 5.482175 AGTCCTACTAGCAAAGATGAACAGT 59.518 40.000 0.00 0.00 0.00 3.55
92 93 6.663953 AGTCCTACTAGCAAAGATGAACAGTA 59.336 38.462 0.00 0.00 0.00 2.74
93 94 7.178628 AGTCCTACTAGCAAAGATGAACAGTAA 59.821 37.037 0.00 0.00 0.00 2.24
94 95 7.982354 GTCCTACTAGCAAAGATGAACAGTAAT 59.018 37.037 0.00 0.00 0.00 1.89
95 96 9.197306 TCCTACTAGCAAAGATGAACAGTAATA 57.803 33.333 0.00 0.00 0.00 0.98
96 97 9.988815 CCTACTAGCAAAGATGAACAGTAATAT 57.011 33.333 0.00 0.00 0.00 1.28
128 129 8.421249 AGAAGATCAAACATAAATCCAAACCA 57.579 30.769 0.00 0.00 0.00 3.67
129 130 8.526147 AGAAGATCAAACATAAATCCAAACCAG 58.474 33.333 0.00 0.00 0.00 4.00
130 131 6.633856 AGATCAAACATAAATCCAAACCAGC 58.366 36.000 0.00 0.00 0.00 4.85
131 132 5.146010 TCAAACATAAATCCAAACCAGCC 57.854 39.130 0.00 0.00 0.00 4.85
132 133 4.020662 TCAAACATAAATCCAAACCAGCCC 60.021 41.667 0.00 0.00 0.00 5.19
133 134 3.182887 ACATAAATCCAAACCAGCCCA 57.817 42.857 0.00 0.00 0.00 5.36
134 135 3.515562 ACATAAATCCAAACCAGCCCAA 58.484 40.909 0.00 0.00 0.00 4.12
135 136 3.260632 ACATAAATCCAAACCAGCCCAAC 59.739 43.478 0.00 0.00 0.00 3.77
136 137 1.799933 AAATCCAAACCAGCCCAACA 58.200 45.000 0.00 0.00 0.00 3.33
137 138 1.047801 AATCCAAACCAGCCCAACAC 58.952 50.000 0.00 0.00 0.00 3.32
138 139 0.188342 ATCCAAACCAGCCCAACACT 59.812 50.000 0.00 0.00 0.00 3.55
139 140 0.032615 TCCAAACCAGCCCAACACTT 60.033 50.000 0.00 0.00 0.00 3.16
140 141 0.104671 CCAAACCAGCCCAACACTTG 59.895 55.000 0.00 0.00 0.00 3.16
150 151 1.741525 CAACACTTGGGTGCCTTGG 59.258 57.895 0.00 0.00 46.57 3.61
151 152 1.042559 CAACACTTGGGTGCCTTGGT 61.043 55.000 0.00 0.00 46.57 3.67
152 153 0.325203 AACACTTGGGTGCCTTGGTT 60.325 50.000 0.00 0.00 46.57 3.67
153 154 0.325203 ACACTTGGGTGCCTTGGTTT 60.325 50.000 0.00 0.00 46.57 3.27
154 155 0.389025 CACTTGGGTGCCTTGGTTTC 59.611 55.000 0.00 0.00 36.61 2.78
155 156 0.261696 ACTTGGGTGCCTTGGTTTCT 59.738 50.000 0.00 0.00 0.00 2.52
156 157 0.961753 CTTGGGTGCCTTGGTTTCTC 59.038 55.000 0.00 0.00 0.00 2.87
157 158 0.260230 TTGGGTGCCTTGGTTTCTCA 59.740 50.000 0.00 0.00 0.00 3.27
158 159 0.467290 TGGGTGCCTTGGTTTCTCAC 60.467 55.000 0.00 0.00 0.00 3.51
170 171 3.927854 GGTTTCTCACCTCCTACTCAAC 58.072 50.000 0.00 0.00 43.29 3.18
171 172 3.576648 GTTTCTCACCTCCTACTCAACG 58.423 50.000 0.00 0.00 0.00 4.10
172 173 1.835494 TCTCACCTCCTACTCAACGG 58.165 55.000 0.00 0.00 0.00 4.44
173 174 1.075050 TCTCACCTCCTACTCAACGGT 59.925 52.381 0.00 0.00 0.00 4.83
174 175 2.306805 TCTCACCTCCTACTCAACGGTA 59.693 50.000 0.00 0.00 0.00 4.02
175 176 3.087031 CTCACCTCCTACTCAACGGTAA 58.913 50.000 0.00 0.00 0.00 2.85
176 177 3.499338 TCACCTCCTACTCAACGGTAAA 58.501 45.455 0.00 0.00 0.00 2.01
177 178 3.896888 TCACCTCCTACTCAACGGTAAAA 59.103 43.478 0.00 0.00 0.00 1.52
178 179 3.992427 CACCTCCTACTCAACGGTAAAAC 59.008 47.826 0.00 0.00 0.00 2.43
179 180 3.642848 ACCTCCTACTCAACGGTAAAACA 59.357 43.478 0.00 0.00 0.00 2.83
180 181 4.285260 ACCTCCTACTCAACGGTAAAACAT 59.715 41.667 0.00 0.00 0.00 2.71
181 182 4.630069 CCTCCTACTCAACGGTAAAACATG 59.370 45.833 0.00 0.00 0.00 3.21
182 183 5.217978 TCCTACTCAACGGTAAAACATGT 57.782 39.130 0.00 0.00 0.00 3.21
183 184 6.343716 TCCTACTCAACGGTAAAACATGTA 57.656 37.500 0.00 0.00 0.00 2.29
184 185 6.392354 TCCTACTCAACGGTAAAACATGTAG 58.608 40.000 0.00 0.00 0.00 2.74
185 186 6.015180 TCCTACTCAACGGTAAAACATGTAGT 60.015 38.462 0.00 0.00 0.00 2.73
186 187 7.176515 TCCTACTCAACGGTAAAACATGTAGTA 59.823 37.037 0.00 0.00 0.00 1.82
187 188 7.814107 CCTACTCAACGGTAAAACATGTAGTAA 59.186 37.037 0.00 0.00 0.00 2.24
188 189 9.195411 CTACTCAACGGTAAAACATGTAGTAAA 57.805 33.333 0.00 0.00 0.00 2.01
189 190 7.854534 ACTCAACGGTAAAACATGTAGTAAAC 58.145 34.615 0.00 0.00 0.00 2.01
190 191 7.712205 ACTCAACGGTAAAACATGTAGTAAACT 59.288 33.333 0.00 0.00 0.00 2.66
191 192 9.195411 CTCAACGGTAAAACATGTAGTAAACTA 57.805 33.333 0.00 0.00 0.00 2.24
192 193 9.709495 TCAACGGTAAAACATGTAGTAAACTAT 57.291 29.630 0.00 0.00 0.00 2.12
193 194 9.749490 CAACGGTAAAACATGTAGTAAACTATG 57.251 33.333 0.00 0.00 0.00 2.23
194 195 8.483307 ACGGTAAAACATGTAGTAAACTATGG 57.517 34.615 0.00 0.00 0.00 2.74
195 196 8.096414 ACGGTAAAACATGTAGTAAACTATGGT 58.904 33.333 0.00 0.00 0.00 3.55
196 197 8.385111 CGGTAAAACATGTAGTAAACTATGGTG 58.615 37.037 0.00 0.00 0.00 4.17
197 198 9.223099 GGTAAAACATGTAGTAAACTATGGTGT 57.777 33.333 0.00 0.00 0.00 4.16
229 230 8.811017 ACATAGTAAATCCTAGAGATCACATGG 58.189 37.037 0.00 0.00 32.47 3.66
230 231 8.811017 CATAGTAAATCCTAGAGATCACATGGT 58.189 37.037 0.00 0.00 32.47 3.55
232 233 8.783660 AGTAAATCCTAGAGATCACATGGTAA 57.216 34.615 0.00 0.00 32.47 2.85
233 234 9.213777 AGTAAATCCTAGAGATCACATGGTAAA 57.786 33.333 0.00 0.00 32.47 2.01
234 235 9.832445 GTAAATCCTAGAGATCACATGGTAAAA 57.168 33.333 0.00 0.00 32.47 1.52
236 237 9.927081 AAATCCTAGAGATCACATGGTAAAAAT 57.073 29.630 0.00 0.00 32.47 1.82
237 238 9.566432 AATCCTAGAGATCACATGGTAAAAATC 57.434 33.333 0.00 0.00 32.47 2.17
238 239 8.324191 TCCTAGAGATCACATGGTAAAAATCT 57.676 34.615 0.00 0.00 0.00 2.40
239 240 8.772250 TCCTAGAGATCACATGGTAAAAATCTT 58.228 33.333 0.00 0.00 0.00 2.40
240 241 8.834465 CCTAGAGATCACATGGTAAAAATCTTG 58.166 37.037 0.00 0.00 0.00 3.02
241 242 7.093322 AGAGATCACATGGTAAAAATCTTGC 57.907 36.000 0.00 0.00 0.00 4.01
242 243 6.096001 AGAGATCACATGGTAAAAATCTTGCC 59.904 38.462 0.00 0.00 0.00 4.52
243 244 5.954150 AGATCACATGGTAAAAATCTTGCCT 59.046 36.000 0.00 0.00 0.00 4.75
244 245 5.643379 TCACATGGTAAAAATCTTGCCTC 57.357 39.130 0.00 0.00 0.00 4.70
245 246 5.324409 TCACATGGTAAAAATCTTGCCTCT 58.676 37.500 0.00 0.00 0.00 3.69
246 247 5.183713 TCACATGGTAAAAATCTTGCCTCTG 59.816 40.000 0.00 0.00 0.00 3.35
247 248 4.082026 ACATGGTAAAAATCTTGCCTCTGC 60.082 41.667 0.00 0.00 38.26 4.26
248 249 3.766545 TGGTAAAAATCTTGCCTCTGCT 58.233 40.909 0.00 0.00 38.71 4.24
249 250 3.758554 TGGTAAAAATCTTGCCTCTGCTC 59.241 43.478 0.00 0.00 38.71 4.26
250 251 3.129462 GGTAAAAATCTTGCCTCTGCTCC 59.871 47.826 0.00 0.00 38.71 4.70
251 252 2.592102 AAAATCTTGCCTCTGCTCCA 57.408 45.000 0.00 0.00 38.71 3.86
252 253 2.592102 AAATCTTGCCTCTGCTCCAA 57.408 45.000 0.00 0.00 38.71 3.53
253 254 2.592102 AATCTTGCCTCTGCTCCAAA 57.408 45.000 0.00 0.00 38.71 3.28
254 255 2.592102 ATCTTGCCTCTGCTCCAAAA 57.408 45.000 0.00 0.00 38.71 2.44
255 256 2.592102 TCTTGCCTCTGCTCCAAAAT 57.408 45.000 0.00 0.00 38.71 1.82
256 257 2.165167 TCTTGCCTCTGCTCCAAAATG 58.835 47.619 0.00 0.00 38.71 2.32
257 258 1.203994 CTTGCCTCTGCTCCAAAATGG 59.796 52.381 0.00 0.00 38.71 3.16
258 259 0.405198 TGCCTCTGCTCCAAAATGGA 59.595 50.000 0.00 0.00 45.34 3.41
275 276 3.184382 TGGAGACAAGGAGGTACATGA 57.816 47.619 0.00 0.00 37.44 3.07
276 277 3.724478 TGGAGACAAGGAGGTACATGAT 58.276 45.455 0.00 0.00 37.44 2.45
277 278 3.452264 TGGAGACAAGGAGGTACATGATG 59.548 47.826 0.00 0.00 37.44 3.07
278 279 3.706594 GGAGACAAGGAGGTACATGATGA 59.293 47.826 0.00 0.00 0.00 2.92
279 280 4.162320 GGAGACAAGGAGGTACATGATGAA 59.838 45.833 0.00 0.00 0.00 2.57
280 281 5.163258 GGAGACAAGGAGGTACATGATGAAT 60.163 44.000 0.00 0.00 0.00 2.57
281 282 6.319048 AGACAAGGAGGTACATGATGAATT 57.681 37.500 0.00 0.00 0.00 2.17
282 283 6.118170 AGACAAGGAGGTACATGATGAATTG 58.882 40.000 0.00 0.00 0.00 2.32
283 284 6.065976 ACAAGGAGGTACATGATGAATTGA 57.934 37.500 0.00 0.00 0.00 2.57
284 285 6.484288 ACAAGGAGGTACATGATGAATTGAA 58.516 36.000 0.00 0.00 0.00 2.69
285 286 6.600822 ACAAGGAGGTACATGATGAATTGAAG 59.399 38.462 0.00 0.00 0.00 3.02
286 287 5.688807 AGGAGGTACATGATGAATTGAAGG 58.311 41.667 0.00 0.00 0.00 3.46
287 288 5.192522 AGGAGGTACATGATGAATTGAAGGT 59.807 40.000 0.00 0.00 0.00 3.50
288 289 6.386927 AGGAGGTACATGATGAATTGAAGGTA 59.613 38.462 0.00 0.00 0.00 3.08
289 290 6.708054 GGAGGTACATGATGAATTGAAGGTAG 59.292 42.308 0.00 0.00 0.00 3.18
290 291 7.200434 AGGTACATGATGAATTGAAGGTAGT 57.800 36.000 0.00 0.00 0.00 2.73
291 292 8.319057 AGGTACATGATGAATTGAAGGTAGTA 57.681 34.615 0.00 0.00 0.00 1.82
292 293 8.768397 AGGTACATGATGAATTGAAGGTAGTAA 58.232 33.333 0.00 0.00 0.00 2.24
293 294 9.391006 GGTACATGATGAATTGAAGGTAGTAAA 57.609 33.333 0.00 0.00 0.00 2.01
296 297 9.520515 ACATGATGAATTGAAGGTAGTAAAACT 57.479 29.630 0.00 0.00 0.00 2.66
297 298 9.778993 CATGATGAATTGAAGGTAGTAAAACTG 57.221 33.333 0.00 0.00 0.00 3.16
298 299 8.335532 TGATGAATTGAAGGTAGTAAAACTGG 57.664 34.615 0.00 0.00 0.00 4.00
299 300 7.393234 TGATGAATTGAAGGTAGTAAAACTGGG 59.607 37.037 0.00 0.00 0.00 4.45
300 301 6.607019 TGAATTGAAGGTAGTAAAACTGGGT 58.393 36.000 0.00 0.00 0.00 4.51
301 302 7.064229 TGAATTGAAGGTAGTAAAACTGGGTT 58.936 34.615 0.00 0.00 0.00 4.11
302 303 8.219178 TGAATTGAAGGTAGTAAAACTGGGTTA 58.781 33.333 0.00 0.00 0.00 2.85
303 304 8.631480 AATTGAAGGTAGTAAAACTGGGTTAG 57.369 34.615 0.00 0.00 0.00 2.34
304 305 5.554070 TGAAGGTAGTAAAACTGGGTTAGC 58.446 41.667 0.00 0.00 0.00 3.09
305 306 5.072058 TGAAGGTAGTAAAACTGGGTTAGCA 59.928 40.000 0.00 0.00 0.00 3.49
306 307 5.571791 AGGTAGTAAAACTGGGTTAGCAA 57.428 39.130 0.00 0.00 0.00 3.91
307 308 5.944135 AGGTAGTAAAACTGGGTTAGCAAA 58.056 37.500 0.00 0.00 0.00 3.68
308 309 6.002082 AGGTAGTAAAACTGGGTTAGCAAAG 58.998 40.000 0.00 0.00 0.00 2.77
309 310 5.182570 GGTAGTAAAACTGGGTTAGCAAAGG 59.817 44.000 0.00 0.00 0.00 3.11
310 311 3.572682 AGTAAAACTGGGTTAGCAAAGGC 59.427 43.478 0.00 0.00 41.61 4.35
311 312 2.080654 AAACTGGGTTAGCAAAGGCA 57.919 45.000 0.00 0.00 44.61 4.75
312 313 1.328279 AACTGGGTTAGCAAAGGCAC 58.672 50.000 0.00 0.00 44.61 5.01
313 314 0.539669 ACTGGGTTAGCAAAGGCACC 60.540 55.000 0.00 0.00 44.61 5.01
314 315 0.251341 CTGGGTTAGCAAAGGCACCT 60.251 55.000 0.00 0.00 44.61 4.00
315 316 0.539438 TGGGTTAGCAAAGGCACCTG 60.539 55.000 0.00 0.00 44.61 4.00
316 317 1.586541 GGTTAGCAAAGGCACCTGC 59.413 57.895 0.00 0.00 44.61 4.85
318 319 1.613255 GGTTAGCAAAGGCACCTGCTA 60.613 52.381 10.11 10.11 44.69 3.49
320 321 2.113860 TAGCAAAGGCACCTGCTAAG 57.886 50.000 11.35 0.00 44.69 2.18
321 322 1.213799 GCAAAGGCACCTGCTAAGC 59.786 57.895 0.00 0.00 41.70 3.09
322 323 1.526575 GCAAAGGCACCTGCTAAGCA 61.527 55.000 0.00 0.00 41.70 3.91
323 324 1.180029 CAAAGGCACCTGCTAAGCAT 58.820 50.000 0.00 0.00 38.13 3.79
324 325 2.368439 CAAAGGCACCTGCTAAGCATA 58.632 47.619 0.00 0.00 38.13 3.14
325 326 2.954318 CAAAGGCACCTGCTAAGCATAT 59.046 45.455 0.00 0.00 38.13 1.78
326 327 2.557920 AGGCACCTGCTAAGCATATC 57.442 50.000 0.00 0.00 38.13 1.63
327 328 1.770658 AGGCACCTGCTAAGCATATCA 59.229 47.619 0.00 0.00 38.13 2.15
328 329 2.149578 GGCACCTGCTAAGCATATCAG 58.850 52.381 0.00 0.00 38.13 2.90
329 330 2.486191 GGCACCTGCTAAGCATATCAGT 60.486 50.000 0.00 0.00 38.13 3.41
330 331 3.244215 GGCACCTGCTAAGCATATCAGTA 60.244 47.826 0.00 0.00 38.13 2.74
331 332 3.743396 GCACCTGCTAAGCATATCAGTAC 59.257 47.826 0.00 0.00 38.13 2.73
332 333 4.310769 CACCTGCTAAGCATATCAGTACC 58.689 47.826 0.00 0.00 38.13 3.34
333 334 3.967326 ACCTGCTAAGCATATCAGTACCA 59.033 43.478 0.00 0.00 38.13 3.25
334 335 4.408921 ACCTGCTAAGCATATCAGTACCAA 59.591 41.667 0.00 0.00 38.13 3.67
335 336 5.104527 ACCTGCTAAGCATATCAGTACCAAA 60.105 40.000 0.00 0.00 38.13 3.28
336 337 6.000219 CCTGCTAAGCATATCAGTACCAAAT 59.000 40.000 0.00 0.00 38.13 2.32
337 338 6.148480 CCTGCTAAGCATATCAGTACCAAATC 59.852 42.308 0.00 0.00 38.13 2.17
338 339 5.997746 TGCTAAGCATATCAGTACCAAATCC 59.002 40.000 0.00 0.00 31.71 3.01
339 340 5.997746 GCTAAGCATATCAGTACCAAATCCA 59.002 40.000 0.00 0.00 0.00 3.41
340 341 6.656693 GCTAAGCATATCAGTACCAAATCCAT 59.343 38.462 0.00 0.00 0.00 3.41
341 342 7.175641 GCTAAGCATATCAGTACCAAATCCATT 59.824 37.037 0.00 0.00 0.00 3.16
342 343 7.902920 AAGCATATCAGTACCAAATCCATTT 57.097 32.000 0.00 0.00 0.00 2.32
343 344 8.995027 AAGCATATCAGTACCAAATCCATTTA 57.005 30.769 0.00 0.00 0.00 1.40
344 345 8.396272 AGCATATCAGTACCAAATCCATTTAC 57.604 34.615 0.00 0.00 0.00 2.01
345 346 7.448469 AGCATATCAGTACCAAATCCATTTACC 59.552 37.037 0.00 0.00 0.00 2.85
346 347 7.230510 GCATATCAGTACCAAATCCATTTACCA 59.769 37.037 0.00 0.00 0.00 3.25
347 348 9.130661 CATATCAGTACCAAATCCATTTACCAA 57.869 33.333 0.00 0.00 0.00 3.67
348 349 6.827586 TCAGTACCAAATCCATTTACCAAC 57.172 37.500 0.00 0.00 0.00 3.77
349 350 6.548321 TCAGTACCAAATCCATTTACCAACT 58.452 36.000 0.00 0.00 0.00 3.16
350 351 7.691213 TCAGTACCAAATCCATTTACCAACTA 58.309 34.615 0.00 0.00 0.00 2.24
351 352 7.827236 TCAGTACCAAATCCATTTACCAACTAG 59.173 37.037 0.00 0.00 0.00 2.57
352 353 5.914898 ACCAAATCCATTTACCAACTAGC 57.085 39.130 0.00 0.00 0.00 3.42
353 354 5.329399 ACCAAATCCATTTACCAACTAGCA 58.671 37.500 0.00 0.00 0.00 3.49
354 355 5.777732 ACCAAATCCATTTACCAACTAGCAA 59.222 36.000 0.00 0.00 0.00 3.91
355 356 6.268847 ACCAAATCCATTTACCAACTAGCAAA 59.731 34.615 0.00 0.00 0.00 3.68
356 357 7.158021 CCAAATCCATTTACCAACTAGCAAAA 58.842 34.615 0.00 0.00 0.00 2.44
357 358 7.659390 CCAAATCCATTTACCAACTAGCAAAAA 59.341 33.333 0.00 0.00 0.00 1.94
378 379 7.453980 AAAAATACAATTGTGCGCATAGATG 57.546 32.000 21.42 16.02 0.00 2.90
379 380 6.375945 AAATACAATTGTGCGCATAGATGA 57.624 33.333 21.42 0.00 0.00 2.92
380 381 3.680642 ACAATTGTGCGCATAGATGAC 57.319 42.857 15.91 0.00 0.00 3.06
381 382 3.273434 ACAATTGTGCGCATAGATGACT 58.727 40.909 15.91 0.00 0.00 3.41
382 383 3.691118 ACAATTGTGCGCATAGATGACTT 59.309 39.130 15.91 0.00 0.00 3.01
383 384 3.957671 ATTGTGCGCATAGATGACTTG 57.042 42.857 15.91 0.00 0.00 3.16
384 385 1.009078 TGTGCGCATAGATGACTTGC 58.991 50.000 15.91 0.00 0.00 4.01
385 386 1.009078 GTGCGCATAGATGACTTGCA 58.991 50.000 15.91 0.00 36.15 4.08
386 387 1.009078 TGCGCATAGATGACTTGCAC 58.991 50.000 5.66 0.00 36.15 4.57
387 388 1.009078 GCGCATAGATGACTTGCACA 58.991 50.000 0.30 0.00 36.15 4.57
388 389 1.600957 GCGCATAGATGACTTGCACAT 59.399 47.619 0.30 0.00 36.15 3.21
389 390 2.802247 GCGCATAGATGACTTGCACATA 59.198 45.455 0.30 0.00 36.15 2.29
390 391 3.248363 GCGCATAGATGACTTGCACATAA 59.752 43.478 0.30 0.00 36.15 1.90
391 392 4.766007 CGCATAGATGACTTGCACATAAC 58.234 43.478 0.00 0.00 36.15 1.89
392 393 4.509230 CGCATAGATGACTTGCACATAACT 59.491 41.667 0.00 0.00 36.15 2.24
393 394 5.557703 CGCATAGATGACTTGCACATAACTG 60.558 44.000 0.00 0.00 36.15 3.16
394 395 5.277683 GCATAGATGACTTGCACATAACTGG 60.278 44.000 0.00 0.00 36.40 4.00
395 396 4.292186 AGATGACTTGCACATAACTGGT 57.708 40.909 0.00 0.00 0.00 4.00
396 397 4.655963 AGATGACTTGCACATAACTGGTT 58.344 39.130 0.00 0.00 0.00 3.67
397 398 5.072741 AGATGACTTGCACATAACTGGTTT 58.927 37.500 0.00 0.00 0.00 3.27
398 399 5.536161 AGATGACTTGCACATAACTGGTTTT 59.464 36.000 0.00 0.00 0.00 2.43
399 400 6.714810 AGATGACTTGCACATAACTGGTTTTA 59.285 34.615 0.00 0.00 0.00 1.52
400 401 6.067263 TGACTTGCACATAACTGGTTTTAC 57.933 37.500 0.00 0.00 0.00 2.01
401 402 5.825679 TGACTTGCACATAACTGGTTTTACT 59.174 36.000 0.00 0.00 0.00 2.24
402 403 6.993308 TGACTTGCACATAACTGGTTTTACTA 59.007 34.615 0.00 0.00 0.00 1.82
403 404 7.041644 TGACTTGCACATAACTGGTTTTACTAC 60.042 37.037 0.00 0.00 0.00 2.73
404 405 6.768861 ACTTGCACATAACTGGTTTTACTACA 59.231 34.615 0.00 0.00 0.00 2.74
405 406 7.447238 ACTTGCACATAACTGGTTTTACTACAT 59.553 33.333 0.00 0.00 0.00 2.29
406 407 8.850007 TTGCACATAACTGGTTTTACTACATA 57.150 30.769 0.00 0.00 0.00 2.29
407 408 8.850007 TGCACATAACTGGTTTTACTACATAA 57.150 30.769 0.00 0.00 0.00 1.90
408 409 8.723311 TGCACATAACTGGTTTTACTACATAAC 58.277 33.333 0.00 0.00 0.00 1.89
409 410 8.943002 GCACATAACTGGTTTTACTACATAACT 58.057 33.333 0.00 0.00 0.00 2.24
415 416 8.943909 ACTGGTTTTACTACATAACTAGATGC 57.056 34.615 0.00 0.00 34.96 3.91
416 417 8.759782 ACTGGTTTTACTACATAACTAGATGCT 58.240 33.333 0.00 0.00 34.96 3.79
417 418 9.250624 CTGGTTTTACTACATAACTAGATGCTC 57.749 37.037 0.00 0.00 33.70 4.26
418 419 8.978472 TGGTTTTACTACATAACTAGATGCTCT 58.022 33.333 0.00 0.00 0.00 4.09
419 420 9.250624 GGTTTTACTACATAACTAGATGCTCTG 57.749 37.037 0.00 0.00 0.00 3.35
420 421 9.250624 GTTTTACTACATAACTAGATGCTCTGG 57.749 37.037 0.00 0.00 0.00 3.86
421 422 8.534954 TTTACTACATAACTAGATGCTCTGGT 57.465 34.615 0.00 0.00 40.05 4.00
422 423 6.398234 ACTACATAACTAGATGCTCTGGTG 57.602 41.667 0.00 0.00 37.20 4.17
423 424 4.065321 ACATAACTAGATGCTCTGGTGC 57.935 45.455 0.00 0.00 37.20 5.01
424 425 3.708631 ACATAACTAGATGCTCTGGTGCT 59.291 43.478 0.00 0.00 37.20 4.40
425 426 4.895889 ACATAACTAGATGCTCTGGTGCTA 59.104 41.667 0.00 0.00 37.20 3.49
426 427 3.810310 AACTAGATGCTCTGGTGCTAC 57.190 47.619 0.00 0.00 37.20 3.58
427 428 3.025322 ACTAGATGCTCTGGTGCTACT 57.975 47.619 0.00 0.00 36.81 2.57
428 429 3.370104 ACTAGATGCTCTGGTGCTACTT 58.630 45.455 0.00 0.00 36.81 2.24
429 430 4.537751 ACTAGATGCTCTGGTGCTACTTA 58.462 43.478 0.00 0.00 36.81 2.24
430 431 4.956700 ACTAGATGCTCTGGTGCTACTTAA 59.043 41.667 0.00 0.00 36.81 1.85
431 432 5.600484 ACTAGATGCTCTGGTGCTACTTAAT 59.400 40.000 0.00 0.00 36.81 1.40
432 433 4.954875 AGATGCTCTGGTGCTACTTAATC 58.045 43.478 0.00 0.00 0.00 1.75
433 434 4.406972 AGATGCTCTGGTGCTACTTAATCA 59.593 41.667 0.00 0.00 0.00 2.57
434 435 3.861840 TGCTCTGGTGCTACTTAATCAC 58.138 45.455 0.00 0.00 0.00 3.06
435 436 3.260632 TGCTCTGGTGCTACTTAATCACA 59.739 43.478 0.00 0.00 32.69 3.58
436 437 4.080919 TGCTCTGGTGCTACTTAATCACAT 60.081 41.667 0.00 0.00 32.69 3.21
437 438 5.128663 TGCTCTGGTGCTACTTAATCACATA 59.871 40.000 0.00 0.00 32.69 2.29
438 439 5.463724 GCTCTGGTGCTACTTAATCACATAC 59.536 44.000 0.00 0.00 32.69 2.39
439 440 5.914033 TCTGGTGCTACTTAATCACATACC 58.086 41.667 0.00 0.00 32.69 2.73
440 441 5.423931 TCTGGTGCTACTTAATCACATACCA 59.576 40.000 0.00 0.00 34.77 3.25
441 442 6.056090 TGGTGCTACTTAATCACATACCAA 57.944 37.500 0.00 0.00 33.18 3.67
442 443 5.878116 TGGTGCTACTTAATCACATACCAAC 59.122 40.000 0.00 0.00 33.18 3.77
443 444 6.113411 GGTGCTACTTAATCACATACCAACT 58.887 40.000 0.00 0.00 32.69 3.16
444 445 6.598064 GGTGCTACTTAATCACATACCAACTT 59.402 38.462 0.00 0.00 32.69 2.66
445 446 7.120726 GGTGCTACTTAATCACATACCAACTTT 59.879 37.037 0.00 0.00 32.69 2.66
446 447 9.158233 GTGCTACTTAATCACATACCAACTTTA 57.842 33.333 0.00 0.00 0.00 1.85
447 448 9.378551 TGCTACTTAATCACATACCAACTTTAG 57.621 33.333 0.00 0.00 0.00 1.85
448 449 9.379791 GCTACTTAATCACATACCAACTTTAGT 57.620 33.333 0.00 0.00 0.00 2.24
455 456 7.429636 TCACATACCAACTTTAGTACTTTGC 57.570 36.000 0.00 0.00 0.00 3.68
456 457 7.221450 TCACATACCAACTTTAGTACTTTGCT 58.779 34.615 0.00 0.00 0.00 3.91
457 458 8.369424 TCACATACCAACTTTAGTACTTTGCTA 58.631 33.333 0.00 0.00 0.00 3.49
458 459 8.440833 CACATACCAACTTTAGTACTTTGCTAC 58.559 37.037 0.00 0.00 0.00 3.58
459 460 8.152246 ACATACCAACTTTAGTACTTTGCTACA 58.848 33.333 0.00 0.00 0.00 2.74
460 461 9.162764 CATACCAACTTTAGTACTTTGCTACAT 57.837 33.333 0.00 0.00 0.00 2.29
461 462 9.734984 ATACCAACTTTAGTACTTTGCTACATT 57.265 29.630 0.00 0.00 0.00 2.71
462 463 8.459911 ACCAACTTTAGTACTTTGCTACATTT 57.540 30.769 0.00 0.00 0.00 2.32
463 464 9.563748 ACCAACTTTAGTACTTTGCTACATTTA 57.436 29.630 0.00 0.00 0.00 1.40
464 465 9.821662 CCAACTTTAGTACTTTGCTACATTTAC 57.178 33.333 0.00 0.00 0.00 2.01
475 476 8.136165 ACTTTGCTACATTTACTAGATACTCCG 58.864 37.037 0.00 0.00 0.00 4.63
476 477 6.010294 TGCTACATTTACTAGATACTCCGC 57.990 41.667 0.00 0.00 0.00 5.54
477 478 5.768662 TGCTACATTTACTAGATACTCCGCT 59.231 40.000 0.00 0.00 0.00 5.52
478 479 6.938596 TGCTACATTTACTAGATACTCCGCTA 59.061 38.462 0.00 0.00 0.00 4.26
479 480 7.610692 TGCTACATTTACTAGATACTCCGCTAT 59.389 37.037 0.00 0.00 0.00 2.97
480 481 9.107177 GCTACATTTACTAGATACTCCGCTATA 57.893 37.037 0.00 0.00 0.00 1.31
837 880 2.445085 ACCTGGTCGGACCACACA 60.445 61.111 25.53 5.24 44.79 3.72
944 1150 3.221222 GCACCACCGCCTAGATCT 58.779 61.111 0.00 0.00 0.00 2.75
945 1151 1.227380 GCACCACCGCCTAGATCTG 60.227 63.158 5.18 0.00 0.00 2.90
946 1152 1.227380 CACCACCGCCTAGATCTGC 60.227 63.158 5.18 0.00 0.00 4.26
947 1153 1.381872 ACCACCGCCTAGATCTGCT 60.382 57.895 5.18 0.00 0.00 4.24
951 1157 0.468214 ACCGCCTAGATCTGCTGCTA 60.468 55.000 5.18 0.00 0.00 3.49
953 1159 0.038709 CGCCTAGATCTGCTGCTACC 60.039 60.000 5.18 0.00 0.00 3.18
954 1160 1.337118 GCCTAGATCTGCTGCTACCT 58.663 55.000 5.18 0.00 0.00 3.08
955 1161 1.272212 GCCTAGATCTGCTGCTACCTC 59.728 57.143 5.18 0.00 0.00 3.85
956 1162 2.875296 CCTAGATCTGCTGCTACCTCT 58.125 52.381 5.18 0.86 0.00 3.69
957 1163 2.819608 CCTAGATCTGCTGCTACCTCTC 59.180 54.545 5.18 0.00 0.00 3.20
958 1164 1.317613 AGATCTGCTGCTACCTCTCG 58.682 55.000 0.00 0.00 0.00 4.04
2274 3453 1.628340 CACAACCACCAGATCCACCTA 59.372 52.381 0.00 0.00 0.00 3.08
2361 3639 6.051717 CCACAAAGTTCTTCTCTTCTTCTCA 58.948 40.000 0.00 0.00 0.00 3.27
2410 3688 2.831526 GGATGATCTCCCTAGCTCTTCC 59.168 54.545 0.00 0.00 38.19 3.46
2708 4002 5.505173 AACTCATTCACACTGTCAAAAGG 57.495 39.130 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.092079 TCAGTTTTTGTGCATGATTTGGATAG 58.908 34.615 0.00 0.00 0.00 2.08
3 4 5.856156 TCAGTTTTTGTGCATGATTTGGAT 58.144 33.333 0.00 0.00 0.00 3.41
5 6 5.524646 ACTTCAGTTTTTGTGCATGATTTGG 59.475 36.000 0.00 0.00 0.00 3.28
6 7 6.592798 ACTTCAGTTTTTGTGCATGATTTG 57.407 33.333 0.00 0.00 0.00 2.32
7 8 7.043565 AGAACTTCAGTTTTTGTGCATGATTT 58.956 30.769 0.00 0.00 38.56 2.17
9 10 6.152932 AGAACTTCAGTTTTTGTGCATGAT 57.847 33.333 0.00 0.00 38.56 2.45
10 11 5.581126 AGAACTTCAGTTTTTGTGCATGA 57.419 34.783 0.00 0.00 38.56 3.07
11 12 6.498304 ACTAGAACTTCAGTTTTTGTGCATG 58.502 36.000 0.00 0.00 38.56 4.06
13 14 6.821665 ACTACTAGAACTTCAGTTTTTGTGCA 59.178 34.615 0.00 0.00 38.56 4.57
14 15 7.247929 ACTACTAGAACTTCAGTTTTTGTGC 57.752 36.000 0.00 0.00 38.56 4.57
19 20 9.543783 CACCTTTACTACTAGAACTTCAGTTTT 57.456 33.333 0.00 0.00 38.56 2.43
20 21 7.656542 GCACCTTTACTACTAGAACTTCAGTTT 59.343 37.037 0.00 0.00 38.56 2.66
21 22 7.153315 GCACCTTTACTACTAGAACTTCAGTT 58.847 38.462 0.00 0.00 41.64 3.16
22 23 6.267014 TGCACCTTTACTACTAGAACTTCAGT 59.733 38.462 0.00 0.00 0.00 3.41
23 24 6.586844 GTGCACCTTTACTACTAGAACTTCAG 59.413 42.308 5.22 0.00 0.00 3.02
24 25 6.041182 TGTGCACCTTTACTACTAGAACTTCA 59.959 38.462 15.69 0.00 0.00 3.02
25 26 6.453092 TGTGCACCTTTACTACTAGAACTTC 58.547 40.000 15.69 0.00 0.00 3.01
26 27 6.415206 TGTGCACCTTTACTACTAGAACTT 57.585 37.500 15.69 0.00 0.00 2.66
27 28 5.047235 CCTGTGCACCTTTACTACTAGAACT 60.047 44.000 15.69 0.00 0.00 3.01
28 29 5.169295 CCTGTGCACCTTTACTACTAGAAC 58.831 45.833 15.69 0.00 0.00 3.01
29 30 4.222145 CCCTGTGCACCTTTACTACTAGAA 59.778 45.833 15.69 0.00 0.00 2.10
30 31 3.767673 CCCTGTGCACCTTTACTACTAGA 59.232 47.826 15.69 0.00 0.00 2.43
31 32 3.767673 TCCCTGTGCACCTTTACTACTAG 59.232 47.826 15.69 0.09 0.00 2.57
32 33 3.781808 TCCCTGTGCACCTTTACTACTA 58.218 45.455 15.69 0.00 0.00 1.82
33 34 2.616524 TCCCTGTGCACCTTTACTACT 58.383 47.619 15.69 0.00 0.00 2.57
34 35 3.270877 CATCCCTGTGCACCTTTACTAC 58.729 50.000 15.69 0.00 0.00 2.73
35 36 2.355716 GCATCCCTGTGCACCTTTACTA 60.356 50.000 15.69 0.00 44.43 1.82
36 37 1.614317 GCATCCCTGTGCACCTTTACT 60.614 52.381 15.69 0.00 44.43 2.24
37 38 0.811281 GCATCCCTGTGCACCTTTAC 59.189 55.000 15.69 0.00 44.43 2.01
38 39 3.264574 GCATCCCTGTGCACCTTTA 57.735 52.632 15.69 0.00 44.43 1.85
39 40 4.102113 GCATCCCTGTGCACCTTT 57.898 55.556 15.69 0.00 44.43 3.11
45 46 1.808133 GCTAGTACTGCATCCCTGTGC 60.808 57.143 5.39 0.00 45.25 4.57
46 47 1.482182 TGCTAGTACTGCATCCCTGTG 59.518 52.381 5.39 0.00 35.31 3.66
47 48 1.866015 TGCTAGTACTGCATCCCTGT 58.134 50.000 5.39 0.00 35.31 4.00
48 49 2.169352 ACTTGCTAGTACTGCATCCCTG 59.831 50.000 17.03 9.96 40.34 4.45
49 50 2.432510 GACTTGCTAGTACTGCATCCCT 59.567 50.000 17.03 4.48 40.34 4.20
50 51 2.483889 GGACTTGCTAGTACTGCATCCC 60.484 54.545 19.11 15.72 40.34 3.85
51 52 2.432510 AGGACTTGCTAGTACTGCATCC 59.567 50.000 12.58 20.72 44.18 3.51
52 53 3.810310 AGGACTTGCTAGTACTGCATC 57.190 47.619 12.58 13.30 44.18 3.91
53 54 4.282496 AGTAGGACTTGCTAGTACTGCAT 58.718 43.478 25.39 11.49 46.97 3.96
54 55 3.698289 AGTAGGACTTGCTAGTACTGCA 58.302 45.455 25.39 10.57 46.97 4.41
55 56 4.261280 GCTAGTAGGACTTGCTAGTACTGC 60.261 50.000 21.61 19.96 45.45 4.40
56 57 4.882427 TGCTAGTAGGACTTGCTAGTACTG 59.118 45.833 21.61 7.20 45.45 2.74
58 59 5.831702 TTGCTAGTAGGACTTGCTAGTAC 57.168 43.478 12.91 1.80 45.07 2.73
59 60 6.185511 TCTTTGCTAGTAGGACTTGCTAGTA 58.814 40.000 12.91 4.33 45.07 1.82
60 61 5.017490 TCTTTGCTAGTAGGACTTGCTAGT 58.983 41.667 12.91 0.00 45.07 2.57
61 62 5.584253 TCTTTGCTAGTAGGACTTGCTAG 57.416 43.478 12.91 5.48 45.07 3.42
62 63 5.656859 TCATCTTTGCTAGTAGGACTTGCTA 59.343 40.000 12.91 4.29 45.07 3.49
63 64 4.467795 TCATCTTTGCTAGTAGGACTTGCT 59.532 41.667 12.91 0.00 45.07 3.91
64 65 4.759782 TCATCTTTGCTAGTAGGACTTGC 58.240 43.478 6.16 6.16 45.06 4.01
65 66 6.166279 TGTTCATCTTTGCTAGTAGGACTTG 58.834 40.000 0.00 0.00 0.00 3.16
66 67 6.014156 ACTGTTCATCTTTGCTAGTAGGACTT 60.014 38.462 0.00 0.00 0.00 3.01
67 68 5.482175 ACTGTTCATCTTTGCTAGTAGGACT 59.518 40.000 0.00 0.00 0.00 3.85
68 69 5.725362 ACTGTTCATCTTTGCTAGTAGGAC 58.275 41.667 0.00 0.00 0.00 3.85
69 70 7.476540 TTACTGTTCATCTTTGCTAGTAGGA 57.523 36.000 0.00 0.00 0.00 2.94
70 71 9.988815 ATATTACTGTTCATCTTTGCTAGTAGG 57.011 33.333 0.00 0.00 0.00 3.18
102 103 9.527157 TGGTTTGGATTTATGTTTGATCTTCTA 57.473 29.630 0.00 0.00 0.00 2.10
103 104 8.421249 TGGTTTGGATTTATGTTTGATCTTCT 57.579 30.769 0.00 0.00 0.00 2.85
104 105 7.276438 GCTGGTTTGGATTTATGTTTGATCTTC 59.724 37.037 0.00 0.00 0.00 2.87
105 106 7.099120 GCTGGTTTGGATTTATGTTTGATCTT 58.901 34.615 0.00 0.00 0.00 2.40
106 107 6.351286 GGCTGGTTTGGATTTATGTTTGATCT 60.351 38.462 0.00 0.00 0.00 2.75
107 108 5.812127 GGCTGGTTTGGATTTATGTTTGATC 59.188 40.000 0.00 0.00 0.00 2.92
108 109 5.338300 GGGCTGGTTTGGATTTATGTTTGAT 60.338 40.000 0.00 0.00 0.00 2.57
109 110 4.020662 GGGCTGGTTTGGATTTATGTTTGA 60.021 41.667 0.00 0.00 0.00 2.69
110 111 4.252878 GGGCTGGTTTGGATTTATGTTTG 58.747 43.478 0.00 0.00 0.00 2.93
111 112 3.906846 TGGGCTGGTTTGGATTTATGTTT 59.093 39.130 0.00 0.00 0.00 2.83
112 113 3.515562 TGGGCTGGTTTGGATTTATGTT 58.484 40.909 0.00 0.00 0.00 2.71
113 114 3.182887 TGGGCTGGTTTGGATTTATGT 57.817 42.857 0.00 0.00 0.00 2.29
114 115 3.260380 TGTTGGGCTGGTTTGGATTTATG 59.740 43.478 0.00 0.00 0.00 1.90
115 116 3.260632 GTGTTGGGCTGGTTTGGATTTAT 59.739 43.478 0.00 0.00 0.00 1.40
116 117 2.630580 GTGTTGGGCTGGTTTGGATTTA 59.369 45.455 0.00 0.00 0.00 1.40
117 118 1.416030 GTGTTGGGCTGGTTTGGATTT 59.584 47.619 0.00 0.00 0.00 2.17
118 119 1.047801 GTGTTGGGCTGGTTTGGATT 58.952 50.000 0.00 0.00 0.00 3.01
119 120 0.188342 AGTGTTGGGCTGGTTTGGAT 59.812 50.000 0.00 0.00 0.00 3.41
120 121 0.032615 AAGTGTTGGGCTGGTTTGGA 60.033 50.000 0.00 0.00 0.00 3.53
121 122 0.104671 CAAGTGTTGGGCTGGTTTGG 59.895 55.000 0.00 0.00 0.00 3.28
122 123 3.665544 CAAGTGTTGGGCTGGTTTG 57.334 52.632 0.00 0.00 0.00 2.93
132 133 1.042559 ACCAAGGCACCCAAGTGTTG 61.043 55.000 0.00 0.00 46.35 3.33
133 134 0.325203 AACCAAGGCACCCAAGTGTT 60.325 50.000 0.00 0.00 46.35 3.32
134 135 0.325203 AAACCAAGGCACCCAAGTGT 60.325 50.000 0.00 0.00 46.35 3.55
136 137 0.261696 AGAAACCAAGGCACCCAAGT 59.738 50.000 0.00 0.00 0.00 3.16
137 138 0.961753 GAGAAACCAAGGCACCCAAG 59.038 55.000 0.00 0.00 0.00 3.61
138 139 0.260230 TGAGAAACCAAGGCACCCAA 59.740 50.000 0.00 0.00 0.00 4.12
139 140 0.467290 GTGAGAAACCAAGGCACCCA 60.467 55.000 0.00 0.00 0.00 4.51
140 141 2.341452 GTGAGAAACCAAGGCACCC 58.659 57.895 0.00 0.00 0.00 4.61
150 151 3.576648 CGTTGAGTAGGAGGTGAGAAAC 58.423 50.000 0.00 0.00 0.00 2.78
151 152 2.561419 CCGTTGAGTAGGAGGTGAGAAA 59.439 50.000 0.00 0.00 0.00 2.52
152 153 2.168496 CCGTTGAGTAGGAGGTGAGAA 58.832 52.381 0.00 0.00 0.00 2.87
153 154 1.075050 ACCGTTGAGTAGGAGGTGAGA 59.925 52.381 0.00 0.00 33.37 3.27
154 155 1.546961 ACCGTTGAGTAGGAGGTGAG 58.453 55.000 0.00 0.00 33.37 3.51
155 156 2.885135 TACCGTTGAGTAGGAGGTGA 57.115 50.000 0.00 0.00 36.49 4.02
156 157 3.947910 TTTACCGTTGAGTAGGAGGTG 57.052 47.619 0.00 0.00 36.49 4.00
157 158 3.642848 TGTTTTACCGTTGAGTAGGAGGT 59.357 43.478 0.00 0.00 38.86 3.85
158 159 4.261578 TGTTTTACCGTTGAGTAGGAGG 57.738 45.455 0.00 0.00 0.00 4.30
159 160 5.235516 ACATGTTTTACCGTTGAGTAGGAG 58.764 41.667 0.00 0.00 0.00 3.69
160 161 5.217978 ACATGTTTTACCGTTGAGTAGGA 57.782 39.130 0.00 0.00 0.00 2.94
161 162 6.161381 ACTACATGTTTTACCGTTGAGTAGG 58.839 40.000 2.30 0.00 32.82 3.18
162 163 8.746922 TTACTACATGTTTTACCGTTGAGTAG 57.253 34.615 2.30 0.00 34.26 2.57
163 164 8.977505 GTTTACTACATGTTTTACCGTTGAGTA 58.022 33.333 2.30 0.00 0.00 2.59
164 165 7.712205 AGTTTACTACATGTTTTACCGTTGAGT 59.288 33.333 2.30 0.00 0.00 3.41
165 166 8.080083 AGTTTACTACATGTTTTACCGTTGAG 57.920 34.615 2.30 0.00 0.00 3.02
166 167 9.709495 ATAGTTTACTACATGTTTTACCGTTGA 57.291 29.630 2.30 0.00 0.00 3.18
167 168 9.749490 CATAGTTTACTACATGTTTTACCGTTG 57.251 33.333 2.30 0.00 0.00 4.10
168 169 8.938906 CCATAGTTTACTACATGTTTTACCGTT 58.061 33.333 2.30 0.00 0.00 4.44
169 170 8.096414 ACCATAGTTTACTACATGTTTTACCGT 58.904 33.333 2.30 0.00 0.00 4.83
170 171 8.385111 CACCATAGTTTACTACATGTTTTACCG 58.615 37.037 2.30 0.00 0.00 4.02
171 172 9.223099 ACACCATAGTTTACTACATGTTTTACC 57.777 33.333 2.30 0.00 0.00 2.85
203 204 8.811017 CCATGTGATCTCTAGGATTTACTATGT 58.189 37.037 0.00 0.00 34.33 2.29
204 205 8.811017 ACCATGTGATCTCTAGGATTTACTATG 58.189 37.037 11.36 0.00 34.33 2.23
205 206 8.964533 ACCATGTGATCTCTAGGATTTACTAT 57.035 34.615 11.36 0.00 34.33 2.12
206 207 9.877222 TTACCATGTGATCTCTAGGATTTACTA 57.123 33.333 11.36 0.00 34.33 1.82
207 208 8.783660 TTACCATGTGATCTCTAGGATTTACT 57.216 34.615 11.36 0.00 34.33 2.24
208 209 9.832445 TTTTACCATGTGATCTCTAGGATTTAC 57.168 33.333 11.36 0.00 34.33 2.01
210 211 9.927081 ATTTTTACCATGTGATCTCTAGGATTT 57.073 29.630 11.36 0.00 34.33 2.17
211 212 9.566432 GATTTTTACCATGTGATCTCTAGGATT 57.434 33.333 11.36 0.00 34.33 3.01
212 213 8.943085 AGATTTTTACCATGTGATCTCTAGGAT 58.057 33.333 11.36 0.00 37.37 3.24
213 214 8.324191 AGATTTTTACCATGTGATCTCTAGGA 57.676 34.615 11.36 0.00 0.00 2.94
214 215 8.834465 CAAGATTTTTACCATGTGATCTCTAGG 58.166 37.037 0.00 0.00 0.00 3.02
215 216 8.341173 GCAAGATTTTTACCATGTGATCTCTAG 58.659 37.037 0.00 0.00 0.00 2.43
216 217 7.283127 GGCAAGATTTTTACCATGTGATCTCTA 59.717 37.037 0.00 0.00 0.00 2.43
217 218 6.096001 GGCAAGATTTTTACCATGTGATCTCT 59.904 38.462 0.00 0.00 0.00 3.10
218 219 6.096001 AGGCAAGATTTTTACCATGTGATCTC 59.904 38.462 0.00 0.00 0.00 2.75
219 220 5.954150 AGGCAAGATTTTTACCATGTGATCT 59.046 36.000 0.00 0.00 0.00 2.75
220 221 6.096001 AGAGGCAAGATTTTTACCATGTGATC 59.904 38.462 0.00 0.00 0.00 2.92
221 222 5.954150 AGAGGCAAGATTTTTACCATGTGAT 59.046 36.000 0.00 0.00 0.00 3.06
222 223 5.183713 CAGAGGCAAGATTTTTACCATGTGA 59.816 40.000 0.00 0.00 0.00 3.58
223 224 5.404946 CAGAGGCAAGATTTTTACCATGTG 58.595 41.667 0.00 0.00 0.00 3.21
224 225 4.082026 GCAGAGGCAAGATTTTTACCATGT 60.082 41.667 0.00 0.00 40.72 3.21
225 226 4.159135 AGCAGAGGCAAGATTTTTACCATG 59.841 41.667 0.00 0.00 44.61 3.66
226 227 4.347607 AGCAGAGGCAAGATTTTTACCAT 58.652 39.130 0.00 0.00 44.61 3.55
227 228 3.758554 GAGCAGAGGCAAGATTTTTACCA 59.241 43.478 0.00 0.00 44.61 3.25
228 229 3.129462 GGAGCAGAGGCAAGATTTTTACC 59.871 47.826 0.00 0.00 44.61 2.85
229 230 3.758554 TGGAGCAGAGGCAAGATTTTTAC 59.241 43.478 0.00 0.00 44.61 2.01
230 231 4.032960 TGGAGCAGAGGCAAGATTTTTA 57.967 40.909 0.00 0.00 44.61 1.52
231 232 2.880443 TGGAGCAGAGGCAAGATTTTT 58.120 42.857 0.00 0.00 44.61 1.94
232 233 2.592102 TGGAGCAGAGGCAAGATTTT 57.408 45.000 0.00 0.00 44.61 1.82
233 234 2.592102 TTGGAGCAGAGGCAAGATTT 57.408 45.000 0.00 0.00 44.61 2.17
234 235 2.592102 TTTGGAGCAGAGGCAAGATT 57.408 45.000 0.00 0.00 44.61 2.40
235 236 2.592102 TTTTGGAGCAGAGGCAAGAT 57.408 45.000 0.00 0.00 44.61 2.40
236 237 2.165167 CATTTTGGAGCAGAGGCAAGA 58.835 47.619 0.00 0.00 44.61 3.02
237 238 1.203994 CCATTTTGGAGCAGAGGCAAG 59.796 52.381 0.00 0.00 40.96 4.01
238 239 1.203038 TCCATTTTGGAGCAGAGGCAA 60.203 47.619 0.00 0.00 42.67 4.52
239 240 0.405198 TCCATTTTGGAGCAGAGGCA 59.595 50.000 0.00 0.00 42.67 4.75
240 241 3.271250 TCCATTTTGGAGCAGAGGC 57.729 52.632 0.00 0.00 42.67 4.70
248 249 2.716424 ACCTCCTTGTCTCCATTTTGGA 59.284 45.455 0.00 0.00 45.98 3.53
249 250 3.160679 ACCTCCTTGTCTCCATTTTGG 57.839 47.619 0.00 0.00 39.43 3.28
250 251 4.651778 TGTACCTCCTTGTCTCCATTTTG 58.348 43.478 0.00 0.00 0.00 2.44
251 252 4.993705 TGTACCTCCTTGTCTCCATTTT 57.006 40.909 0.00 0.00 0.00 1.82
252 253 4.536090 TCATGTACCTCCTTGTCTCCATTT 59.464 41.667 0.00 0.00 0.00 2.32
253 254 4.104086 TCATGTACCTCCTTGTCTCCATT 58.896 43.478 0.00 0.00 0.00 3.16
254 255 3.724478 TCATGTACCTCCTTGTCTCCAT 58.276 45.455 0.00 0.00 0.00 3.41
255 256 3.184382 TCATGTACCTCCTTGTCTCCA 57.816 47.619 0.00 0.00 0.00 3.86
256 257 3.706594 TCATCATGTACCTCCTTGTCTCC 59.293 47.826 0.00 0.00 0.00 3.71
257 258 5.344743 TTCATCATGTACCTCCTTGTCTC 57.655 43.478 0.00 0.00 0.00 3.36
258 259 5.965033 ATTCATCATGTACCTCCTTGTCT 57.035 39.130 0.00 0.00 0.00 3.41
259 260 6.115446 TCAATTCATCATGTACCTCCTTGTC 58.885 40.000 0.00 0.00 0.00 3.18
260 261 6.065976 TCAATTCATCATGTACCTCCTTGT 57.934 37.500 0.00 0.00 0.00 3.16
261 262 6.039047 CCTTCAATTCATCATGTACCTCCTTG 59.961 42.308 0.00 0.00 0.00 3.61
262 263 6.125029 CCTTCAATTCATCATGTACCTCCTT 58.875 40.000 0.00 0.00 0.00 3.36
263 264 5.192522 ACCTTCAATTCATCATGTACCTCCT 59.807 40.000 0.00 0.00 0.00 3.69
264 265 5.440610 ACCTTCAATTCATCATGTACCTCC 58.559 41.667 0.00 0.00 0.00 4.30
265 266 7.275920 ACTACCTTCAATTCATCATGTACCTC 58.724 38.462 0.00 0.00 0.00 3.85
266 267 7.200434 ACTACCTTCAATTCATCATGTACCT 57.800 36.000 0.00 0.00 0.00 3.08
267 268 8.958119 TTACTACCTTCAATTCATCATGTACC 57.042 34.615 0.00 0.00 0.00 3.34
270 271 9.520515 AGTTTTACTACCTTCAATTCATCATGT 57.479 29.630 0.00 0.00 0.00 3.21
271 272 9.778993 CAGTTTTACTACCTTCAATTCATCATG 57.221 33.333 0.00 0.00 0.00 3.07
272 273 8.960591 CCAGTTTTACTACCTTCAATTCATCAT 58.039 33.333 0.00 0.00 0.00 2.45
273 274 7.393234 CCCAGTTTTACTACCTTCAATTCATCA 59.607 37.037 0.00 0.00 0.00 3.07
274 275 7.393515 ACCCAGTTTTACTACCTTCAATTCATC 59.606 37.037 0.00 0.00 0.00 2.92
275 276 7.238710 ACCCAGTTTTACTACCTTCAATTCAT 58.761 34.615 0.00 0.00 0.00 2.57
276 277 6.607019 ACCCAGTTTTACTACCTTCAATTCA 58.393 36.000 0.00 0.00 0.00 2.57
277 278 7.520451 AACCCAGTTTTACTACCTTCAATTC 57.480 36.000 0.00 0.00 0.00 2.17
278 279 7.176165 GCTAACCCAGTTTTACTACCTTCAATT 59.824 37.037 0.00 0.00 0.00 2.32
279 280 6.657966 GCTAACCCAGTTTTACTACCTTCAAT 59.342 38.462 0.00 0.00 0.00 2.57
280 281 5.999600 GCTAACCCAGTTTTACTACCTTCAA 59.000 40.000 0.00 0.00 0.00 2.69
281 282 5.072058 TGCTAACCCAGTTTTACTACCTTCA 59.928 40.000 0.00 0.00 0.00 3.02
282 283 5.554070 TGCTAACCCAGTTTTACTACCTTC 58.446 41.667 0.00 0.00 0.00 3.46
283 284 5.571791 TGCTAACCCAGTTTTACTACCTT 57.428 39.130 0.00 0.00 0.00 3.50
284 285 5.571791 TTGCTAACCCAGTTTTACTACCT 57.428 39.130 0.00 0.00 0.00 3.08
285 286 5.182570 CCTTTGCTAACCCAGTTTTACTACC 59.817 44.000 0.00 0.00 0.00 3.18
286 287 5.335426 GCCTTTGCTAACCCAGTTTTACTAC 60.335 44.000 0.00 0.00 33.53 2.73
287 288 4.763279 GCCTTTGCTAACCCAGTTTTACTA 59.237 41.667 0.00 0.00 33.53 1.82
288 289 3.572682 GCCTTTGCTAACCCAGTTTTACT 59.427 43.478 0.00 0.00 33.53 2.24
289 290 3.319689 TGCCTTTGCTAACCCAGTTTTAC 59.680 43.478 0.00 0.00 38.71 2.01
290 291 3.319689 GTGCCTTTGCTAACCCAGTTTTA 59.680 43.478 0.00 0.00 38.71 1.52
291 292 2.102420 GTGCCTTTGCTAACCCAGTTTT 59.898 45.455 0.00 0.00 38.71 2.43
292 293 1.686587 GTGCCTTTGCTAACCCAGTTT 59.313 47.619 0.00 0.00 38.71 2.66
293 294 1.328279 GTGCCTTTGCTAACCCAGTT 58.672 50.000 0.00 0.00 38.71 3.16
294 295 0.539669 GGTGCCTTTGCTAACCCAGT 60.540 55.000 0.00 0.00 38.71 4.00
295 296 0.251341 AGGTGCCTTTGCTAACCCAG 60.251 55.000 0.00 0.00 34.80 4.45
296 297 0.539438 CAGGTGCCTTTGCTAACCCA 60.539 55.000 0.00 0.00 34.80 4.51
297 298 1.877576 GCAGGTGCCTTTGCTAACCC 61.878 60.000 0.00 0.00 34.80 4.11
298 299 1.586541 GCAGGTGCCTTTGCTAACC 59.413 57.895 0.00 0.00 37.35 2.85
303 304 1.213799 GCTTAGCAGGTGCCTTTGC 59.786 57.895 0.00 0.00 43.38 3.68
304 305 1.180029 ATGCTTAGCAGGTGCCTTTG 58.820 50.000 13.74 0.00 43.65 2.77
305 306 2.806945 TATGCTTAGCAGGTGCCTTT 57.193 45.000 13.74 0.00 43.65 3.11
306 307 2.173356 TGATATGCTTAGCAGGTGCCTT 59.827 45.455 13.74 0.00 43.65 4.35
307 308 1.770658 TGATATGCTTAGCAGGTGCCT 59.229 47.619 13.74 0.00 43.65 4.75
308 309 2.149578 CTGATATGCTTAGCAGGTGCC 58.850 52.381 13.74 0.85 43.65 5.01
309 310 2.843701 ACTGATATGCTTAGCAGGTGC 58.156 47.619 23.74 2.80 44.40 5.01
310 311 4.202253 TGGTACTGATATGCTTAGCAGGTG 60.202 45.833 23.74 5.66 44.40 4.00
311 312 3.967326 TGGTACTGATATGCTTAGCAGGT 59.033 43.478 23.74 14.17 44.40 4.00
312 313 4.607293 TGGTACTGATATGCTTAGCAGG 57.393 45.455 23.74 10.06 44.40 4.85
313 314 6.148480 GGATTTGGTACTGATATGCTTAGCAG 59.852 42.308 19.88 19.88 45.36 4.24
314 315 5.997746 GGATTTGGTACTGATATGCTTAGCA 59.002 40.000 10.09 10.09 44.86 3.49
315 316 5.997746 TGGATTTGGTACTGATATGCTTAGC 59.002 40.000 0.00 0.00 0.00 3.09
316 317 8.627208 AATGGATTTGGTACTGATATGCTTAG 57.373 34.615 0.00 0.00 0.00 2.18
317 318 8.995027 AAATGGATTTGGTACTGATATGCTTA 57.005 30.769 0.00 0.00 0.00 3.09
318 319 7.902920 AAATGGATTTGGTACTGATATGCTT 57.097 32.000 0.00 0.00 0.00 3.91
319 320 7.448469 GGTAAATGGATTTGGTACTGATATGCT 59.552 37.037 0.00 0.00 0.00 3.79
320 321 7.230510 TGGTAAATGGATTTGGTACTGATATGC 59.769 37.037 0.00 0.00 0.00 3.14
321 322 8.690203 TGGTAAATGGATTTGGTACTGATATG 57.310 34.615 0.00 0.00 0.00 1.78
322 323 9.131791 GTTGGTAAATGGATTTGGTACTGATAT 57.868 33.333 0.00 0.00 0.00 1.63
323 324 8.333235 AGTTGGTAAATGGATTTGGTACTGATA 58.667 33.333 0.00 0.00 0.00 2.15
324 325 7.182060 AGTTGGTAAATGGATTTGGTACTGAT 58.818 34.615 0.00 0.00 0.00 2.90
325 326 6.548321 AGTTGGTAAATGGATTTGGTACTGA 58.452 36.000 0.00 0.00 0.00 3.41
326 327 6.834168 AGTTGGTAAATGGATTTGGTACTG 57.166 37.500 0.00 0.00 0.00 2.74
327 328 6.602009 GCTAGTTGGTAAATGGATTTGGTACT 59.398 38.462 0.00 0.00 0.00 2.73
328 329 6.376018 TGCTAGTTGGTAAATGGATTTGGTAC 59.624 38.462 0.00 0.00 0.00 3.34
329 330 6.486056 TGCTAGTTGGTAAATGGATTTGGTA 58.514 36.000 0.00 0.00 0.00 3.25
330 331 5.329399 TGCTAGTTGGTAAATGGATTTGGT 58.671 37.500 0.00 0.00 0.00 3.67
331 332 5.913137 TGCTAGTTGGTAAATGGATTTGG 57.087 39.130 0.00 0.00 0.00 3.28
332 333 8.600449 TTTTTGCTAGTTGGTAAATGGATTTG 57.400 30.769 0.00 0.00 0.00 2.32
354 355 7.220683 GTCATCTATGCGCACAATTGTATTTTT 59.779 33.333 14.90 0.00 0.00 1.94
355 356 6.692681 GTCATCTATGCGCACAATTGTATTTT 59.307 34.615 14.90 0.00 0.00 1.82
356 357 6.038603 AGTCATCTATGCGCACAATTGTATTT 59.961 34.615 14.90 0.00 0.00 1.40
357 358 5.528690 AGTCATCTATGCGCACAATTGTATT 59.471 36.000 14.90 0.00 0.00 1.89
358 359 5.059161 AGTCATCTATGCGCACAATTGTAT 58.941 37.500 14.90 3.74 0.00 2.29
359 360 4.441792 AGTCATCTATGCGCACAATTGTA 58.558 39.130 14.90 0.00 0.00 2.41
360 361 3.273434 AGTCATCTATGCGCACAATTGT 58.727 40.909 14.90 4.92 0.00 2.71
361 362 3.957671 AGTCATCTATGCGCACAATTG 57.042 42.857 14.90 9.20 0.00 2.32
362 363 3.488047 GCAAGTCATCTATGCGCACAATT 60.488 43.478 14.90 0.00 0.00 2.32
363 364 2.032550 GCAAGTCATCTATGCGCACAAT 59.967 45.455 14.90 3.23 0.00 2.71
364 365 1.398041 GCAAGTCATCTATGCGCACAA 59.602 47.619 14.90 2.38 0.00 3.33
365 366 1.009078 GCAAGTCATCTATGCGCACA 58.991 50.000 14.90 0.00 0.00 4.57
366 367 1.009078 TGCAAGTCATCTATGCGCAC 58.991 50.000 14.90 0.00 42.91 5.34
367 368 1.009078 GTGCAAGTCATCTATGCGCA 58.991 50.000 14.96 14.96 46.79 6.09
368 369 3.814049 GTGCAAGTCATCTATGCGC 57.186 52.632 0.00 0.00 42.91 6.09
369 370 4.509230 AGTTATGTGCAAGTCATCTATGCG 59.491 41.667 0.00 0.00 42.91 4.73
370 371 5.277683 CCAGTTATGTGCAAGTCATCTATGC 60.278 44.000 0.00 0.00 40.45 3.14
371 372 5.819379 ACCAGTTATGTGCAAGTCATCTATG 59.181 40.000 0.00 0.00 0.00 2.23
372 373 5.994250 ACCAGTTATGTGCAAGTCATCTAT 58.006 37.500 0.00 0.00 0.00 1.98
373 374 5.420725 ACCAGTTATGTGCAAGTCATCTA 57.579 39.130 0.00 0.00 0.00 1.98
374 375 4.292186 ACCAGTTATGTGCAAGTCATCT 57.708 40.909 0.00 0.00 0.00 2.90
375 376 5.376854 AAACCAGTTATGTGCAAGTCATC 57.623 39.130 0.00 0.00 0.00 2.92
376 377 5.789643 AAAACCAGTTATGTGCAAGTCAT 57.210 34.783 0.00 0.00 0.00 3.06
377 378 5.825679 AGTAAAACCAGTTATGTGCAAGTCA 59.174 36.000 0.00 0.00 0.00 3.41
378 379 6.313744 AGTAAAACCAGTTATGTGCAAGTC 57.686 37.500 0.00 0.00 0.00 3.01
379 380 6.768861 TGTAGTAAAACCAGTTATGTGCAAGT 59.231 34.615 0.00 0.00 0.00 3.16
380 381 7.197071 TGTAGTAAAACCAGTTATGTGCAAG 57.803 36.000 0.00 0.00 0.00 4.01
381 382 7.753309 ATGTAGTAAAACCAGTTATGTGCAA 57.247 32.000 0.00 0.00 0.00 4.08
382 383 8.723311 GTTATGTAGTAAAACCAGTTATGTGCA 58.277 33.333 0.00 0.00 0.00 4.57
383 384 8.943002 AGTTATGTAGTAAAACCAGTTATGTGC 58.057 33.333 0.00 0.00 0.00 4.57
389 390 9.379791 GCATCTAGTTATGTAGTAAAACCAGTT 57.620 33.333 0.00 0.00 0.00 3.16
390 391 8.759782 AGCATCTAGTTATGTAGTAAAACCAGT 58.240 33.333 0.00 0.00 0.00 4.00
391 392 9.250624 GAGCATCTAGTTATGTAGTAAAACCAG 57.749 37.037 0.00 0.00 0.00 4.00
411 412 4.509600 GTGATTAAGTAGCACCAGAGCATC 59.490 45.833 0.00 0.00 36.85 3.91
412 413 4.080919 TGTGATTAAGTAGCACCAGAGCAT 60.081 41.667 0.00 0.00 36.85 3.79
413 414 3.260632 TGTGATTAAGTAGCACCAGAGCA 59.739 43.478 0.00 0.00 36.85 4.26
414 415 3.861840 TGTGATTAAGTAGCACCAGAGC 58.138 45.455 0.00 0.00 0.00 4.09
415 416 5.986135 GGTATGTGATTAAGTAGCACCAGAG 59.014 44.000 0.00 0.00 0.00 3.35
416 417 5.423931 TGGTATGTGATTAAGTAGCACCAGA 59.576 40.000 0.00 0.00 0.00 3.86
417 418 5.670485 TGGTATGTGATTAAGTAGCACCAG 58.330 41.667 0.00 0.00 0.00 4.00
418 419 5.685520 TGGTATGTGATTAAGTAGCACCA 57.314 39.130 0.00 0.00 0.00 4.17
419 420 6.113411 AGTTGGTATGTGATTAAGTAGCACC 58.887 40.000 0.00 0.00 0.00 5.01
420 421 7.611213 AAGTTGGTATGTGATTAAGTAGCAC 57.389 36.000 0.00 0.00 0.00 4.40
421 422 9.378551 CTAAAGTTGGTATGTGATTAAGTAGCA 57.621 33.333 0.00 0.00 0.00 3.49
422 423 9.379791 ACTAAAGTTGGTATGTGATTAAGTAGC 57.620 33.333 0.00 0.00 0.00 3.58
429 430 8.512138 GCAAAGTACTAAAGTTGGTATGTGATT 58.488 33.333 0.00 0.00 0.00 2.57
430 431 7.883311 AGCAAAGTACTAAAGTTGGTATGTGAT 59.117 33.333 7.73 0.00 30.39 3.06
431 432 7.221450 AGCAAAGTACTAAAGTTGGTATGTGA 58.779 34.615 7.73 0.00 30.39 3.58
432 433 7.435068 AGCAAAGTACTAAAGTTGGTATGTG 57.565 36.000 7.73 0.00 30.39 3.21
433 434 8.152246 TGTAGCAAAGTACTAAAGTTGGTATGT 58.848 33.333 16.03 0.00 36.62 2.29
434 435 8.542497 TGTAGCAAAGTACTAAAGTTGGTATG 57.458 34.615 16.03 0.00 36.62 2.39
435 436 9.734984 AATGTAGCAAAGTACTAAAGTTGGTAT 57.265 29.630 16.03 4.32 36.62 2.73
436 437 9.563748 AAATGTAGCAAAGTACTAAAGTTGGTA 57.436 29.630 11.17 11.17 33.95 3.25
437 438 8.459911 AAATGTAGCAAAGTACTAAAGTTGGT 57.540 30.769 12.80 12.80 35.92 3.67
438 439 9.821662 GTAAATGTAGCAAAGTACTAAAGTTGG 57.178 33.333 0.00 0.00 0.00 3.77
449 450 8.136165 CGGAGTATCTAGTAAATGTAGCAAAGT 58.864 37.037 0.00 0.00 33.73 2.66
450 451 7.115095 GCGGAGTATCTAGTAAATGTAGCAAAG 59.885 40.741 0.00 0.00 33.73 2.77
451 452 6.921857 GCGGAGTATCTAGTAAATGTAGCAAA 59.078 38.462 0.00 0.00 33.73 3.68
452 453 6.264744 AGCGGAGTATCTAGTAAATGTAGCAA 59.735 38.462 0.00 0.00 33.73 3.91
453 454 5.768662 AGCGGAGTATCTAGTAAATGTAGCA 59.231 40.000 0.00 0.00 33.73 3.49
454 455 6.256912 AGCGGAGTATCTAGTAAATGTAGC 57.743 41.667 0.00 0.00 33.73 3.58
483 484 9.897744 CTGCAGTGAATTTTTCTCTTTGTAATA 57.102 29.630 5.25 0.00 31.64 0.98
484 485 7.869429 CCTGCAGTGAATTTTTCTCTTTGTAAT 59.131 33.333 13.81 0.00 31.64 1.89
485 486 7.147915 ACCTGCAGTGAATTTTTCTCTTTGTAA 60.148 33.333 13.81 0.00 31.64 2.41
486 487 6.321181 ACCTGCAGTGAATTTTTCTCTTTGTA 59.679 34.615 13.81 0.00 31.64 2.41
938 1144 2.499197 CGAGAGGTAGCAGCAGATCTA 58.501 52.381 0.00 0.00 0.00 1.98
939 1145 1.317613 CGAGAGGTAGCAGCAGATCT 58.682 55.000 0.00 0.00 0.00 2.75
940 1146 0.318614 GCGAGAGGTAGCAGCAGATC 60.319 60.000 0.00 0.00 0.00 2.75
941 1147 1.739049 GCGAGAGGTAGCAGCAGAT 59.261 57.895 0.00 0.00 0.00 2.90
942 1148 2.418910 GGCGAGAGGTAGCAGCAGA 61.419 63.158 0.00 0.00 34.54 4.26
944 1150 3.826754 CGGCGAGAGGTAGCAGCA 61.827 66.667 0.00 0.00 34.54 4.41
946 1152 4.577246 GGCGGCGAGAGGTAGCAG 62.577 72.222 12.98 0.00 34.54 4.24
1920 2992 7.538303 AACAACAAATTGGAAGATTCAACAC 57.462 32.000 0.00 0.00 40.42 3.32
2274 3453 3.424105 GGCTGGGGGAGGAAGCAT 61.424 66.667 0.00 0.00 38.73 3.79
2361 3639 2.173519 CCATGGATCTTTGTGGTGCTT 58.826 47.619 5.56 0.00 0.00 3.91
2410 3688 1.162698 TGGTAACAGAGTCGTCTCCG 58.837 55.000 6.04 0.00 46.17 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.