Multiple sequence alignment - TraesCS7B01G222500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G222500 | chr7B | 100.000 | 4565 | 0 | 0 | 1 | 4565 | 418052164 | 418047600 | 0.000000e+00 | 8431.0 |
1 | TraesCS7B01G222500 | chr7B | 91.954 | 87 | 7 | 0 | 4327 | 4413 | 175616049 | 175616135 | 6.200000e-24 | 122.0 |
2 | TraesCS7B01G222500 | chr7D | 94.262 | 3956 | 123 | 46 | 340 | 4254 | 407074395 | 407070503 | 0.000000e+00 | 5952.0 |
3 | TraesCS7B01G222500 | chr7D | 93.103 | 145 | 4 | 2 | 1 | 145 | 407076932 | 407076794 | 1.660000e-49 | 207.0 |
4 | TraesCS7B01G222500 | chr7D | 91.209 | 91 | 8 | 0 | 4328 | 4418 | 529492524 | 529492434 | 1.720000e-24 | 124.0 |
5 | TraesCS7B01G222500 | chr7A | 94.965 | 3813 | 102 | 31 | 502 | 4258 | 464575267 | 464571489 | 0.000000e+00 | 5895.0 |
6 | TraesCS7B01G222500 | chr7A | 90.541 | 148 | 6 | 1 | 1 | 140 | 464576157 | 464576010 | 6.030000e-44 | 189.0 |
7 | TraesCS7B01G222500 | chr7A | 87.879 | 99 | 11 | 1 | 4320 | 4418 | 470998489 | 470998586 | 1.040000e-21 | 115.0 |
8 | TraesCS7B01G222500 | chr1B | 89.541 | 784 | 51 | 20 | 60 | 833 | 53604766 | 53604004 | 0.000000e+00 | 965.0 |
9 | TraesCS7B01G222500 | chr1B | 89.017 | 783 | 55 | 21 | 60 | 833 | 46514907 | 46514147 | 0.000000e+00 | 941.0 |
10 | TraesCS7B01G222500 | chr1B | 94.737 | 76 | 4 | 0 | 4328 | 4403 | 671964459 | 671964534 | 8.020000e-23 | 119.0 |
11 | TraesCS7B01G222500 | chr1B | 100.000 | 41 | 0 | 0 | 4525 | 4565 | 99709300 | 99709260 | 4.900000e-10 | 76.8 |
12 | TraesCS7B01G222500 | chr4B | 89.231 | 780 | 59 | 19 | 63 | 833 | 475718193 | 475717430 | 0.000000e+00 | 952.0 |
13 | TraesCS7B01G222500 | chr4B | 73.881 | 670 | 113 | 44 | 2494 | 3117 | 119823533 | 119822880 | 1.290000e-50 | 211.0 |
14 | TraesCS7B01G222500 | chr4B | 90.426 | 94 | 6 | 3 | 4322 | 4414 | 508560105 | 508560014 | 2.230000e-23 | 121.0 |
15 | TraesCS7B01G222500 | chr6A | 85.636 | 731 | 64 | 19 | 893 | 1623 | 504123856 | 504123167 | 0.000000e+00 | 730.0 |
16 | TraesCS7B01G222500 | chr6A | 89.518 | 477 | 43 | 5 | 1761 | 2231 | 504123176 | 504122701 | 8.450000e-167 | 597.0 |
17 | TraesCS7B01G222500 | chr6A | 100.000 | 41 | 0 | 0 | 4525 | 4565 | 603645790 | 603645830 | 4.900000e-10 | 76.8 |
18 | TraesCS7B01G222500 | chr2B | 76.780 | 646 | 109 | 24 | 2503 | 3117 | 464466406 | 464467041 | 1.580000e-84 | 324.0 |
19 | TraesCS7B01G222500 | chr2B | 100.000 | 41 | 0 | 0 | 4525 | 4565 | 629099624 | 629099584 | 4.900000e-10 | 76.8 |
20 | TraesCS7B01G222500 | chr2A | 76.636 | 642 | 114 | 19 | 2503 | 3117 | 530380453 | 530381085 | 5.700000e-84 | 322.0 |
21 | TraesCS7B01G222500 | chr2D | 76.361 | 643 | 114 | 19 | 2503 | 3117 | 392525787 | 392526419 | 1.230000e-80 | 311.0 |
22 | TraesCS7B01G222500 | chr1D | 73.380 | 710 | 139 | 33 | 2434 | 3106 | 53965428 | 53964732 | 7.690000e-53 | 219.0 |
23 | TraesCS7B01G222500 | chr1D | 91.209 | 91 | 6 | 2 | 4325 | 4414 | 390668683 | 390668772 | 6.200000e-24 | 122.0 |
24 | TraesCS7B01G222500 | chr4A | 75.155 | 483 | 89 | 24 | 2494 | 2959 | 497441174 | 497440706 | 1.000000e-46 | 198.0 |
25 | TraesCS7B01G222500 | chr4A | 88.991 | 109 | 11 | 1 | 3009 | 3117 | 497440625 | 497440518 | 2.870000e-27 | 134.0 |
26 | TraesCS7B01G222500 | chr4A | 97.674 | 43 | 0 | 1 | 4524 | 4565 | 16109008 | 16109050 | 6.340000e-09 | 73.1 |
27 | TraesCS7B01G222500 | chr4D | 74.534 | 483 | 92 | 24 | 2494 | 2959 | 84546348 | 84545880 | 1.010000e-41 | 182.0 |
28 | TraesCS7B01G222500 | chr4D | 88.073 | 109 | 12 | 1 | 3009 | 3117 | 84545793 | 84545686 | 1.330000e-25 | 128.0 |
29 | TraesCS7B01G222500 | chr3B | 87.500 | 120 | 15 | 0 | 3305 | 3424 | 572078161 | 572078280 | 6.160000e-29 | 139.0 |
30 | TraesCS7B01G222500 | chr3B | 100.000 | 35 | 0 | 0 | 4531 | 4565 | 62964369 | 62964403 | 1.060000e-06 | 65.8 |
31 | TraesCS7B01G222500 | chr5B | 94.318 | 88 | 5 | 0 | 4327 | 4414 | 523435470 | 523435557 | 7.970000e-28 | 135.0 |
32 | TraesCS7B01G222500 | chr6B | 93.103 | 87 | 6 | 0 | 4328 | 4414 | 101221312 | 101221226 | 1.330000e-25 | 128.0 |
33 | TraesCS7B01G222500 | chr6B | 88.119 | 101 | 10 | 2 | 4328 | 4428 | 578029159 | 578029061 | 8.020000e-23 | 119.0 |
34 | TraesCS7B01G222500 | chr5D | 86.538 | 104 | 8 | 3 | 3014 | 3114 | 502596487 | 502596587 | 4.830000e-20 | 110.0 |
35 | TraesCS7B01G222500 | chr5A | 83.929 | 112 | 18 | 0 | 3313 | 3424 | 212214940 | 212215051 | 1.740000e-19 | 108.0 |
36 | TraesCS7B01G222500 | chr5A | 96.774 | 31 | 1 | 0 | 2497 | 2527 | 212214848 | 212214818 | 8.000000e-03 | 52.8 |
37 | TraesCS7B01G222500 | chr1A | 97.674 | 43 | 0 | 1 | 4524 | 4565 | 514129376 | 514129418 | 6.340000e-09 | 73.1 |
38 | TraesCS7B01G222500 | chr6D | 96.970 | 33 | 1 | 0 | 2498 | 2530 | 205267309 | 205267277 | 6.380000e-04 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G222500 | chr7B | 418047600 | 418052164 | 4564 | True | 8431.0 | 8431 | 100.0000 | 1 | 4565 | 1 | chr7B.!!$R1 | 4564 |
1 | TraesCS7B01G222500 | chr7D | 407070503 | 407076932 | 6429 | True | 3079.5 | 5952 | 93.6825 | 1 | 4254 | 2 | chr7D.!!$R2 | 4253 |
2 | TraesCS7B01G222500 | chr7A | 464571489 | 464576157 | 4668 | True | 3042.0 | 5895 | 92.7530 | 1 | 4258 | 2 | chr7A.!!$R1 | 4257 |
3 | TraesCS7B01G222500 | chr1B | 53604004 | 53604766 | 762 | True | 965.0 | 965 | 89.5410 | 60 | 833 | 1 | chr1B.!!$R2 | 773 |
4 | TraesCS7B01G222500 | chr1B | 46514147 | 46514907 | 760 | True | 941.0 | 941 | 89.0170 | 60 | 833 | 1 | chr1B.!!$R1 | 773 |
5 | TraesCS7B01G222500 | chr4B | 475717430 | 475718193 | 763 | True | 952.0 | 952 | 89.2310 | 63 | 833 | 1 | chr4B.!!$R2 | 770 |
6 | TraesCS7B01G222500 | chr4B | 119822880 | 119823533 | 653 | True | 211.0 | 211 | 73.8810 | 2494 | 3117 | 1 | chr4B.!!$R1 | 623 |
7 | TraesCS7B01G222500 | chr6A | 504122701 | 504123856 | 1155 | True | 663.5 | 730 | 87.5770 | 893 | 2231 | 2 | chr6A.!!$R1 | 1338 |
8 | TraesCS7B01G222500 | chr2B | 464466406 | 464467041 | 635 | False | 324.0 | 324 | 76.7800 | 2503 | 3117 | 1 | chr2B.!!$F1 | 614 |
9 | TraesCS7B01G222500 | chr2A | 530380453 | 530381085 | 632 | False | 322.0 | 322 | 76.6360 | 2503 | 3117 | 1 | chr2A.!!$F1 | 614 |
10 | TraesCS7B01G222500 | chr2D | 392525787 | 392526419 | 632 | False | 311.0 | 311 | 76.3610 | 2503 | 3117 | 1 | chr2D.!!$F1 | 614 |
11 | TraesCS7B01G222500 | chr1D | 53964732 | 53965428 | 696 | True | 219.0 | 219 | 73.3800 | 2434 | 3106 | 1 | chr1D.!!$R1 | 672 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
707 | 3342 | 0.398318 | AACAGCCTCCTTCACCTCAC | 59.602 | 55.0 | 0.00 | 0.0 | 0.0 | 3.51 | F |
875 | 3542 | 0.900182 | TCCATCGATCCATCCCTCCG | 60.900 | 60.0 | 0.00 | 0.0 | 0.0 | 4.63 | F |
2269 | 4960 | 0.320247 | GATCATCGTAGCAGGGCTGG | 60.320 | 60.0 | 0.07 | 0.0 | 40.1 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2179 | 4867 | 0.321564 | TTCTTCGCATCACCACCCTG | 60.322 | 55.000 | 0.00 | 0.0 | 0.0 | 4.45 | R |
2481 | 5172 | 2.066393 | CCCGATCTTGGCCTCCTCA | 61.066 | 63.158 | 3.32 | 0.0 | 0.0 | 3.86 | R |
3808 | 6569 | 0.395312 | ACAAACCCACCACTACTCCG | 59.605 | 55.000 | 0.00 | 0.0 | 0.0 | 4.63 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
105 | 117 | 7.308649 | GCTTGGAAACCCTAAAACAAAACAAAA | 60.309 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
106 | 118 | 8.459911 | TTGGAAACCCTAAAACAAAACAAAAA | 57.540 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
145 | 337 | 6.625300 | GCTGTACGGGAGTTATGAGTATATGG | 60.625 | 46.154 | 3.34 | 0.00 | 43.33 | 2.74 |
180 | 1926 | 4.362279 | CTGTGTGTTCTTTTGGTGAATGG | 58.638 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
249 | 1995 | 9.453572 | TCTTCAATATGCCATCTGTATTTATCC | 57.546 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
272 | 2018 | 6.262720 | TCCTTTCTTTTTCCAATGCCATTTTG | 59.737 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
288 | 2034 | 8.121305 | TGCCATTTTGACTAGAACATGTTTAT | 57.879 | 30.769 | 13.36 | 7.48 | 0.00 | 1.40 |
352 | 2754 | 6.485313 | TGATAACCTACCACAAGTTTTCAGTG | 59.515 | 38.462 | 0.00 | 0.00 | 31.03 | 3.66 |
361 | 2763 | 5.051774 | CCACAAGTTTTCAGTGTATTTTGCG | 60.052 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
409 | 2812 | 3.997021 | CGGAAAGCACAAGAGAATAGTGT | 59.003 | 43.478 | 0.00 | 0.00 | 35.75 | 3.55 |
410 | 2813 | 5.168569 | CGGAAAGCACAAGAGAATAGTGTA | 58.831 | 41.667 | 0.00 | 0.00 | 35.75 | 2.90 |
411 | 2814 | 5.289675 | CGGAAAGCACAAGAGAATAGTGTAG | 59.710 | 44.000 | 0.00 | 0.00 | 35.75 | 2.74 |
412 | 2815 | 5.582665 | GGAAAGCACAAGAGAATAGTGTAGG | 59.417 | 44.000 | 0.00 | 0.00 | 35.75 | 3.18 |
511 | 3132 | 5.237344 | CCTGCTAAGTGGTTATGCACTAATC | 59.763 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
573 | 3198 | 7.789386 | GTTTTGGAACTAAGCAGCAGCTAGAT | 61.789 | 42.308 | 3.18 | 0.00 | 40.52 | 1.98 |
574 | 3199 | 8.537466 | GTTTTGGAACTAAGCAGCAGCTAGATA | 61.537 | 40.741 | 3.18 | 0.00 | 40.52 | 1.98 |
621 | 3251 | 2.224646 | GCAAAGTGAGGGAGGAGAAACT | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
622 | 3252 | 3.008049 | GCAAAGTGAGGGAGGAGAAACTA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
623 | 3253 | 4.505039 | GCAAAGTGAGGGAGGAGAAACTAA | 60.505 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
624 | 3254 | 5.804771 | GCAAAGTGAGGGAGGAGAAACTAAT | 60.805 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
692 | 3327 | 5.105513 | AGTCTACCAAACCAAACCAAAACAG | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
698 | 3333 | 1.342975 | ACCAAACCAAAACAGCCTCCT | 60.343 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
699 | 3334 | 1.762370 | CCAAACCAAAACAGCCTCCTT | 59.238 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
700 | 3335 | 2.224042 | CCAAACCAAAACAGCCTCCTTC | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
701 | 3336 | 2.430332 | CAAACCAAAACAGCCTCCTTCA | 59.570 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
702 | 3337 | 1.692411 | ACCAAAACAGCCTCCTTCAC | 58.308 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
703 | 3338 | 0.961753 | CCAAAACAGCCTCCTTCACC | 59.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
704 | 3339 | 1.479389 | CCAAAACAGCCTCCTTCACCT | 60.479 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
705 | 3340 | 1.882623 | CAAAACAGCCTCCTTCACCTC | 59.117 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
706 | 3341 | 1.140312 | AAACAGCCTCCTTCACCTCA | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
707 | 3342 | 0.398318 | AACAGCCTCCTTCACCTCAC | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
708 | 3343 | 1.298014 | CAGCCTCCTTCACCTCACC | 59.702 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
709 | 3344 | 1.159664 | AGCCTCCTTCACCTCACCT | 59.840 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
822 | 3489 | 2.915137 | CCCAACCCAACCCAACCG | 60.915 | 66.667 | 0.00 | 0.00 | 0.00 | 4.44 |
825 | 3492 | 1.460273 | CCAACCCAACCCAACCGAAG | 61.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
871 | 3538 | 1.337260 | CGTTCTCCATCGATCCATCCC | 60.337 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
875 | 3542 | 0.900182 | TCCATCGATCCATCCCTCCG | 60.900 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
950 | 3617 | 3.283684 | CGAGCCCAACCAAACGCA | 61.284 | 61.111 | 0.00 | 0.00 | 0.00 | 5.24 |
955 | 3622 | 1.441311 | CCCAACCAAACGCAAAGCT | 59.559 | 52.632 | 0.00 | 0.00 | 0.00 | 3.74 |
963 | 3637 | 1.172812 | AAACGCAAAGCTCCCTCCAC | 61.173 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
966 | 3640 | 2.045926 | CAAAGCTCCCTCCACCCG | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
1046 | 3720 | 4.954970 | CACCAGCACAACGCCCCT | 62.955 | 66.667 | 0.00 | 0.00 | 44.04 | 4.79 |
1047 | 3721 | 4.643387 | ACCAGCACAACGCCCCTC | 62.643 | 66.667 | 0.00 | 0.00 | 44.04 | 4.30 |
1254 | 3940 | 2.844839 | GGCCGCCTCACCTCCTAT | 60.845 | 66.667 | 0.71 | 0.00 | 0.00 | 2.57 |
1257 | 3943 | 1.457643 | CCGCCTCACCTCCTATCCA | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
2269 | 4960 | 0.320247 | GATCATCGTAGCAGGGCTGG | 60.320 | 60.000 | 0.07 | 0.00 | 40.10 | 4.85 |
2733 | 5447 | 0.032815 | TCGTGTTCGAGTTCATGCCA | 59.967 | 50.000 | 0.00 | 0.00 | 41.35 | 4.92 |
3492 | 6242 | 3.152400 | GACCGGAGCCCGTACCAT | 61.152 | 66.667 | 9.46 | 0.00 | 46.80 | 3.55 |
3693 | 6450 | 9.768662 | AGAAACAAGTTCTCATAATTTTGCAAT | 57.231 | 25.926 | 0.00 | 0.00 | 43.49 | 3.56 |
3756 | 6517 | 6.338676 | GTTAATTTAACGTTTTGTGGTTCGC | 58.661 | 36.000 | 5.91 | 0.00 | 0.00 | 4.70 |
3788 | 6549 | 7.667219 | AGATGAAATGAAACCACAGAGTATGTT | 59.333 | 33.333 | 0.00 | 0.00 | 41.41 | 2.71 |
3789 | 6550 | 7.581213 | TGAAATGAAACCACAGAGTATGTTT | 57.419 | 32.000 | 0.00 | 0.00 | 41.41 | 2.83 |
3790 | 6551 | 7.424803 | TGAAATGAAACCACAGAGTATGTTTG | 58.575 | 34.615 | 0.00 | 0.00 | 41.41 | 2.93 |
3792 | 6553 | 5.749596 | TGAAACCACAGAGTATGTTTGTG | 57.250 | 39.130 | 0.00 | 0.00 | 41.41 | 3.33 |
3796 | 6557 | 5.801531 | ACCACAGAGTATGTTTGTGTAGA | 57.198 | 39.130 | 0.00 | 0.00 | 41.41 | 2.59 |
3797 | 6558 | 6.169557 | ACCACAGAGTATGTTTGTGTAGAA | 57.830 | 37.500 | 0.00 | 0.00 | 41.41 | 2.10 |
3798 | 6559 | 6.769512 | ACCACAGAGTATGTTTGTGTAGAAT | 58.230 | 36.000 | 0.00 | 0.00 | 41.41 | 2.40 |
3799 | 6560 | 7.224297 | ACCACAGAGTATGTTTGTGTAGAATT | 58.776 | 34.615 | 0.00 | 0.00 | 41.41 | 2.17 |
3800 | 6561 | 8.372459 | ACCACAGAGTATGTTTGTGTAGAATTA | 58.628 | 33.333 | 0.00 | 0.00 | 41.41 | 1.40 |
3809 | 6570 | 7.372451 | TGTTTGTGTAGAATTAGGGAAATCG | 57.628 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3810 | 6571 | 6.373216 | TGTTTGTGTAGAATTAGGGAAATCGG | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
3832 | 6597 | 4.445305 | GGAGTAGTGGTGGGTTTGTACTTT | 60.445 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
3852 | 6618 | 7.974730 | ACTTTTAGGTTGTAGGTAGAGCTAT | 57.025 | 36.000 | 0.00 | 0.00 | 0.00 | 2.97 |
3854 | 6620 | 8.911965 | ACTTTTAGGTTGTAGGTAGAGCTATAC | 58.088 | 37.037 | 10.10 | 10.10 | 0.00 | 1.47 |
3855 | 6621 | 7.502120 | TTTAGGTTGTAGGTAGAGCTATACG | 57.498 | 40.000 | 12.16 | 0.00 | 0.00 | 3.06 |
4011 | 6794 | 7.730332 | TGTCCCTAGCTGATTTATTATCTCTCA | 59.270 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
4039 | 6822 | 8.165239 | TCATTCTTTGCAAGTAGTTGTTGTAT | 57.835 | 30.769 | 11.85 | 0.00 | 35.92 | 2.29 |
4073 | 6856 | 7.173047 | TGAACGTCCACATGAATATGAATATGG | 59.827 | 37.037 | 0.00 | 0.00 | 37.73 | 2.74 |
4121 | 6924 | 3.847037 | TCTTGTTGCTTACGTCGAAAC | 57.153 | 42.857 | 0.00 | 0.00 | 0.00 | 2.78 |
4124 | 6927 | 5.042593 | TCTTGTTGCTTACGTCGAAACTTA | 58.957 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
4284 | 7092 | 9.794719 | ATAAATAAACCCAGAGGAATTACTAGC | 57.205 | 33.333 | 0.00 | 0.00 | 36.73 | 3.42 |
4285 | 7093 | 4.505324 | AAACCCAGAGGAATTACTAGCC | 57.495 | 45.455 | 0.00 | 0.00 | 36.73 | 3.93 |
4286 | 7094 | 3.130734 | ACCCAGAGGAATTACTAGCCA | 57.869 | 47.619 | 0.00 | 0.00 | 36.73 | 4.75 |
4287 | 7095 | 2.772515 | ACCCAGAGGAATTACTAGCCAC | 59.227 | 50.000 | 0.00 | 0.00 | 36.73 | 5.01 |
4288 | 7096 | 3.041946 | CCCAGAGGAATTACTAGCCACT | 58.958 | 50.000 | 0.00 | 0.00 | 33.47 | 4.00 |
4289 | 7097 | 3.070302 | CCCAGAGGAATTACTAGCCACTC | 59.930 | 52.174 | 0.00 | 0.00 | 33.47 | 3.51 |
4290 | 7098 | 3.964031 | CCAGAGGAATTACTAGCCACTCT | 59.036 | 47.826 | 0.00 | 0.00 | 34.43 | 3.24 |
4291 | 7099 | 4.407296 | CCAGAGGAATTACTAGCCACTCTT | 59.593 | 45.833 | 0.00 | 0.00 | 31.99 | 2.85 |
4292 | 7100 | 5.104735 | CCAGAGGAATTACTAGCCACTCTTT | 60.105 | 44.000 | 0.00 | 0.00 | 31.99 | 2.52 |
4293 | 7101 | 5.814705 | CAGAGGAATTACTAGCCACTCTTTG | 59.185 | 44.000 | 0.00 | 0.00 | 31.99 | 2.77 |
4294 | 7102 | 5.485708 | AGAGGAATTACTAGCCACTCTTTGT | 59.514 | 40.000 | 0.00 | 0.00 | 30.25 | 2.83 |
4295 | 7103 | 6.668283 | AGAGGAATTACTAGCCACTCTTTGTA | 59.332 | 38.462 | 0.00 | 0.00 | 30.25 | 2.41 |
4296 | 7104 | 7.345914 | AGAGGAATTACTAGCCACTCTTTGTAT | 59.654 | 37.037 | 0.00 | 0.00 | 30.25 | 2.29 |
4297 | 7105 | 7.275920 | AGGAATTACTAGCCACTCTTTGTATG | 58.724 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
4298 | 7106 | 7.048512 | GGAATTACTAGCCACTCTTTGTATGT | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
4299 | 7107 | 7.224949 | GGAATTACTAGCCACTCTTTGTATGTC | 59.775 | 40.741 | 0.00 | 0.00 | 0.00 | 3.06 |
4300 | 7108 | 4.473477 | ACTAGCCACTCTTTGTATGTCC | 57.527 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4301 | 7109 | 2.386661 | AGCCACTCTTTGTATGTCCG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4302 | 7110 | 0.727398 | GCCACTCTTTGTATGTCCGC | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
4303 | 7111 | 1.676014 | GCCACTCTTTGTATGTCCGCT | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
4304 | 7112 | 2.002586 | CCACTCTTTGTATGTCCGCTG | 58.997 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
4305 | 7113 | 2.612972 | CCACTCTTTGTATGTCCGCTGT | 60.613 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4306 | 7114 | 2.668457 | CACTCTTTGTATGTCCGCTGTC | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4307 | 7115 | 2.299013 | ACTCTTTGTATGTCCGCTGTCA | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
4308 | 7116 | 3.244078 | ACTCTTTGTATGTCCGCTGTCAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
4309 | 7117 | 3.734463 | TCTTTGTATGTCCGCTGTCAAA | 58.266 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
4310 | 7118 | 3.745975 | TCTTTGTATGTCCGCTGTCAAAG | 59.254 | 43.478 | 0.00 | 0.00 | 41.35 | 2.77 |
4311 | 7119 | 3.394674 | TTGTATGTCCGCTGTCAAAGA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
4312 | 7120 | 3.610040 | TGTATGTCCGCTGTCAAAGAT | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
4313 | 7121 | 4.729227 | TGTATGTCCGCTGTCAAAGATA | 57.271 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
4314 | 7122 | 4.430007 | TGTATGTCCGCTGTCAAAGATAC | 58.570 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
4315 | 7123 | 2.380084 | TGTCCGCTGTCAAAGATACC | 57.620 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4316 | 7124 | 1.278238 | GTCCGCTGTCAAAGATACCG | 58.722 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4317 | 7125 | 1.135199 | GTCCGCTGTCAAAGATACCGA | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
4318 | 7126 | 1.135199 | TCCGCTGTCAAAGATACCGAC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4319 | 7127 | 1.403647 | CCGCTGTCAAAGATACCGACA | 60.404 | 52.381 | 0.00 | 0.00 | 37.33 | 4.35 |
4320 | 7128 | 1.654105 | CGCTGTCAAAGATACCGACAC | 59.346 | 52.381 | 0.00 | 0.00 | 34.83 | 3.67 |
4321 | 7129 | 2.683968 | GCTGTCAAAGATACCGACACA | 58.316 | 47.619 | 0.00 | 0.00 | 34.83 | 3.72 |
4322 | 7130 | 3.262420 | GCTGTCAAAGATACCGACACAT | 58.738 | 45.455 | 0.00 | 0.00 | 34.83 | 3.21 |
4323 | 7131 | 4.430007 | GCTGTCAAAGATACCGACACATA | 58.570 | 43.478 | 0.00 | 0.00 | 34.83 | 2.29 |
4324 | 7132 | 4.267928 | GCTGTCAAAGATACCGACACATAC | 59.732 | 45.833 | 0.00 | 0.00 | 34.83 | 2.39 |
4325 | 7133 | 5.394224 | TGTCAAAGATACCGACACATACA | 57.606 | 39.130 | 0.00 | 0.00 | 34.83 | 2.29 |
4326 | 7134 | 5.785243 | TGTCAAAGATACCGACACATACAA | 58.215 | 37.500 | 0.00 | 0.00 | 34.83 | 2.41 |
4327 | 7135 | 6.403049 | TGTCAAAGATACCGACACATACAAT | 58.597 | 36.000 | 0.00 | 0.00 | 34.83 | 2.71 |
4328 | 7136 | 7.548967 | TGTCAAAGATACCGACACATACAATA | 58.451 | 34.615 | 0.00 | 0.00 | 34.83 | 1.90 |
4329 | 7137 | 7.490079 | TGTCAAAGATACCGACACATACAATAC | 59.510 | 37.037 | 0.00 | 0.00 | 34.83 | 1.89 |
4330 | 7138 | 7.705325 | GTCAAAGATACCGACACATACAATACT | 59.295 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
4331 | 7139 | 7.919091 | TCAAAGATACCGACACATACAATACTC | 59.081 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
4332 | 7140 | 6.328641 | AGATACCGACACATACAATACTCC | 57.671 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
4333 | 7141 | 3.814005 | ACCGACACATACAATACTCCC | 57.186 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
4334 | 7142 | 3.371965 | ACCGACACATACAATACTCCCT | 58.628 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
4335 | 7143 | 3.383825 | ACCGACACATACAATACTCCCTC | 59.616 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4336 | 7144 | 3.243771 | CCGACACATACAATACTCCCTCC | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
4337 | 7145 | 3.550233 | CGACACATACAATACTCCCTCCG | 60.550 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
4338 | 7146 | 3.371965 | ACACATACAATACTCCCTCCGT | 58.628 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
4339 | 7147 | 3.773119 | ACACATACAATACTCCCTCCGTT | 59.227 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
4340 | 7148 | 4.142004 | ACACATACAATACTCCCTCCGTTC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
4341 | 7149 | 4.099573 | CACATACAATACTCCCTCCGTTCT | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
4342 | 7150 | 5.301045 | CACATACAATACTCCCTCCGTTCTA | 59.699 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4343 | 7151 | 5.895534 | ACATACAATACTCCCTCCGTTCTAA | 59.104 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4344 | 7152 | 6.381994 | ACATACAATACTCCCTCCGTTCTAAA | 59.618 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
4345 | 7153 | 5.750352 | ACAATACTCCCTCCGTTCTAAAA | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
4346 | 7154 | 6.309389 | ACAATACTCCCTCCGTTCTAAAAT | 57.691 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4347 | 7155 | 7.427989 | ACAATACTCCCTCCGTTCTAAAATA | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4348 | 7156 | 7.498443 | ACAATACTCCCTCCGTTCTAAAATAG | 58.502 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
4349 | 7157 | 7.343833 | ACAATACTCCCTCCGTTCTAAAATAGA | 59.656 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
4350 | 7158 | 8.368668 | CAATACTCCCTCCGTTCTAAAATAGAT | 58.631 | 37.037 | 0.00 | 0.00 | 34.22 | 1.98 |
4351 | 7159 | 6.163135 | ACTCCCTCCGTTCTAAAATAGATG | 57.837 | 41.667 | 0.00 | 0.00 | 34.22 | 2.90 |
4352 | 7160 | 5.897824 | ACTCCCTCCGTTCTAAAATAGATGA | 59.102 | 40.000 | 0.00 | 0.00 | 34.22 | 2.92 |
4353 | 7161 | 6.158023 | TCCCTCCGTTCTAAAATAGATGAC | 57.842 | 41.667 | 0.00 | 0.00 | 34.22 | 3.06 |
4354 | 7162 | 5.897824 | TCCCTCCGTTCTAAAATAGATGACT | 59.102 | 40.000 | 0.00 | 0.00 | 34.22 | 3.41 |
4355 | 7163 | 6.040616 | TCCCTCCGTTCTAAAATAGATGACTC | 59.959 | 42.308 | 0.00 | 0.00 | 34.22 | 3.36 |
4356 | 7164 | 6.183360 | CCCTCCGTTCTAAAATAGATGACTCA | 60.183 | 42.308 | 0.00 | 0.00 | 34.22 | 3.41 |
4357 | 7165 | 7.265673 | CCTCCGTTCTAAAATAGATGACTCAA | 58.734 | 38.462 | 0.00 | 0.00 | 34.22 | 3.02 |
4358 | 7166 | 7.928706 | CCTCCGTTCTAAAATAGATGACTCAAT | 59.071 | 37.037 | 0.00 | 0.00 | 34.22 | 2.57 |
4359 | 7167 | 9.319143 | CTCCGTTCTAAAATAGATGACTCAATT | 57.681 | 33.333 | 0.00 | 0.00 | 34.22 | 2.32 |
4360 | 7168 | 9.667107 | TCCGTTCTAAAATAGATGACTCAATTT | 57.333 | 29.630 | 0.00 | 0.00 | 34.22 | 1.82 |
4438 | 7246 | 9.182214 | ACATACTAGTAGTAGTTTTTGGATCGA | 57.818 | 33.333 | 15.34 | 0.00 | 40.23 | 3.59 |
4442 | 7250 | 9.406113 | ACTAGTAGTAGTTTTTGGATCGATAGT | 57.594 | 33.333 | 0.00 | 0.00 | 35.88 | 2.12 |
4444 | 7252 | 8.928270 | AGTAGTAGTTTTTGGATCGATAGTTG | 57.072 | 34.615 | 0.00 | 0.00 | 37.40 | 3.16 |
4445 | 7253 | 8.529476 | AGTAGTAGTTTTTGGATCGATAGTTGT | 58.471 | 33.333 | 0.00 | 0.00 | 37.40 | 3.32 |
4446 | 7254 | 9.793252 | GTAGTAGTTTTTGGATCGATAGTTGTA | 57.207 | 33.333 | 0.00 | 0.00 | 37.40 | 2.41 |
4448 | 7256 | 9.886132 | AGTAGTTTTTGGATCGATAGTTGTAAT | 57.114 | 29.630 | 0.00 | 0.00 | 37.40 | 1.89 |
4451 | 7259 | 9.840427 | AGTTTTTGGATCGATAGTTGTAATTTG | 57.160 | 29.630 | 0.00 | 0.00 | 37.40 | 2.32 |
4452 | 7260 | 9.834628 | GTTTTTGGATCGATAGTTGTAATTTGA | 57.165 | 29.630 | 0.00 | 0.00 | 37.40 | 2.69 |
4453 | 7261 | 9.834628 | TTTTTGGATCGATAGTTGTAATTTGAC | 57.165 | 29.630 | 0.00 | 0.00 | 37.40 | 3.18 |
4454 | 7262 | 7.548196 | TTGGATCGATAGTTGTAATTTGACC | 57.452 | 36.000 | 0.00 | 0.00 | 37.40 | 4.02 |
4455 | 7263 | 6.645306 | TGGATCGATAGTTGTAATTTGACCA | 58.355 | 36.000 | 0.00 | 0.00 | 37.40 | 4.02 |
4456 | 7264 | 6.761242 | TGGATCGATAGTTGTAATTTGACCAG | 59.239 | 38.462 | 0.00 | 0.00 | 37.40 | 4.00 |
4457 | 7265 | 6.761714 | GGATCGATAGTTGTAATTTGACCAGT | 59.238 | 38.462 | 0.00 | 0.00 | 37.40 | 4.00 |
4458 | 7266 | 7.924412 | GGATCGATAGTTGTAATTTGACCAGTA | 59.076 | 37.037 | 0.00 | 0.00 | 37.40 | 2.74 |
4459 | 7267 | 9.309516 | GATCGATAGTTGTAATTTGACCAGTAA | 57.690 | 33.333 | 0.00 | 0.00 | 37.40 | 2.24 |
4460 | 7268 | 9.661563 | ATCGATAGTTGTAATTTGACCAGTAAA | 57.338 | 29.630 | 0.00 | 0.00 | 37.40 | 2.01 |
4461 | 7269 | 9.491675 | TCGATAGTTGTAATTTGACCAGTAAAA | 57.508 | 29.630 | 0.00 | 0.00 | 37.40 | 1.52 |
4462 | 7270 | 9.537848 | CGATAGTTGTAATTTGACCAGTAAAAC | 57.462 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
4472 | 7280 | 8.650143 | ATTTGACCAGTAAAACATAACATCCT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
4473 | 7281 | 9.747898 | ATTTGACCAGTAAAACATAACATCCTA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 2.94 |
4474 | 7282 | 9.747898 | TTTGACCAGTAAAACATAACATCCTAT | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4494 | 7302 | 8.929260 | TCCTATAAGTACGTAGGATGATTTCA | 57.071 | 34.615 | 16.10 | 0.00 | 41.09 | 2.69 |
4495 | 7303 | 9.529823 | TCCTATAAGTACGTAGGATGATTTCAT | 57.470 | 33.333 | 16.10 | 0.00 | 41.09 | 2.57 |
4496 | 7304 | 9.574458 | CCTATAAGTACGTAGGATGATTTCATG | 57.426 | 37.037 | 13.57 | 0.00 | 39.91 | 3.07 |
4499 | 7307 | 6.961360 | AGTACGTAGGATGATTTCATGAGA | 57.039 | 37.500 | 0.00 | 0.00 | 36.57 | 3.27 |
4500 | 7308 | 6.740110 | AGTACGTAGGATGATTTCATGAGAC | 58.260 | 40.000 | 0.00 | 0.00 | 36.57 | 3.36 |
4501 | 7309 | 5.598416 | ACGTAGGATGATTTCATGAGACA | 57.402 | 39.130 | 0.00 | 0.00 | 36.57 | 3.41 |
4502 | 7310 | 5.595885 | ACGTAGGATGATTTCATGAGACAG | 58.404 | 41.667 | 0.00 | 0.00 | 36.57 | 3.51 |
4503 | 7311 | 4.447054 | CGTAGGATGATTTCATGAGACAGC | 59.553 | 45.833 | 0.00 | 0.78 | 36.57 | 4.40 |
4504 | 7312 | 4.498894 | AGGATGATTTCATGAGACAGCA | 57.501 | 40.909 | 13.13 | 4.79 | 36.57 | 4.41 |
4505 | 7313 | 4.851843 | AGGATGATTTCATGAGACAGCAA | 58.148 | 39.130 | 13.13 | 0.00 | 36.57 | 3.91 |
4506 | 7314 | 4.639310 | AGGATGATTTCATGAGACAGCAAC | 59.361 | 41.667 | 13.13 | 3.66 | 36.57 | 4.17 |
4507 | 7315 | 4.201990 | GGATGATTTCATGAGACAGCAACC | 60.202 | 45.833 | 13.13 | 7.89 | 36.57 | 3.77 |
4508 | 7316 | 3.753815 | TGATTTCATGAGACAGCAACCA | 58.246 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
4509 | 7317 | 4.143543 | TGATTTCATGAGACAGCAACCAA | 58.856 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
4510 | 7318 | 3.988379 | TTTCATGAGACAGCAACCAAC | 57.012 | 42.857 | 0.00 | 0.00 | 0.00 | 3.77 |
4511 | 7319 | 1.896220 | TCATGAGACAGCAACCAACC | 58.104 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4512 | 7320 | 0.518636 | CATGAGACAGCAACCAACCG | 59.481 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
4513 | 7321 | 0.396435 | ATGAGACAGCAACCAACCGA | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4514 | 7322 | 0.531974 | TGAGACAGCAACCAACCGAC | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4515 | 7323 | 1.227853 | AGACAGCAACCAACCGACC | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
4516 | 7324 | 1.525077 | GACAGCAACCAACCGACCA | 60.525 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
4517 | 7325 | 1.077357 | ACAGCAACCAACCGACCAA | 60.077 | 52.632 | 0.00 | 0.00 | 0.00 | 3.67 |
4518 | 7326 | 1.101049 | ACAGCAACCAACCGACCAAG | 61.101 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4519 | 7327 | 1.528309 | AGCAACCAACCGACCAAGG | 60.528 | 57.895 | 0.00 | 0.00 | 37.30 | 3.61 |
4530 | 7338 | 3.349927 | ACCGACCAAGGTTAATTAAGGC | 58.650 | 45.455 | 0.00 | 0.00 | 43.00 | 4.35 |
4531 | 7339 | 2.686405 | CCGACCAAGGTTAATTAAGGCC | 59.314 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4532 | 7340 | 3.617284 | CGACCAAGGTTAATTAAGGCCT | 58.383 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
4533 | 7341 | 3.377172 | CGACCAAGGTTAATTAAGGCCTG | 59.623 | 47.826 | 5.69 | 0.00 | 0.00 | 4.85 |
4534 | 7342 | 4.341487 | GACCAAGGTTAATTAAGGCCTGT | 58.659 | 43.478 | 5.69 | 0.00 | 0.00 | 4.00 |
4535 | 7343 | 4.747583 | ACCAAGGTTAATTAAGGCCTGTT | 58.252 | 39.130 | 5.69 | 4.61 | 0.00 | 3.16 |
4536 | 7344 | 4.770531 | ACCAAGGTTAATTAAGGCCTGTTC | 59.229 | 41.667 | 5.69 | 0.00 | 0.00 | 3.18 |
4537 | 7345 | 4.142469 | CCAAGGTTAATTAAGGCCTGTTCG | 60.142 | 45.833 | 5.69 | 0.07 | 0.00 | 3.95 |
4538 | 7346 | 3.617284 | AGGTTAATTAAGGCCTGTTCGG | 58.383 | 45.455 | 5.69 | 0.00 | 0.00 | 4.30 |
4539 | 7347 | 3.009805 | AGGTTAATTAAGGCCTGTTCGGT | 59.990 | 43.478 | 5.69 | 0.00 | 34.25 | 4.69 |
4540 | 7348 | 4.225717 | AGGTTAATTAAGGCCTGTTCGGTA | 59.774 | 41.667 | 5.69 | 0.00 | 34.25 | 4.02 |
4541 | 7349 | 5.104235 | AGGTTAATTAAGGCCTGTTCGGTAT | 60.104 | 40.000 | 5.69 | 0.00 | 34.25 | 2.73 |
4542 | 7350 | 5.237996 | GGTTAATTAAGGCCTGTTCGGTATC | 59.762 | 44.000 | 5.69 | 0.00 | 34.25 | 2.24 |
4543 | 7351 | 4.772886 | AATTAAGGCCTGTTCGGTATCT | 57.227 | 40.909 | 5.69 | 0.00 | 34.25 | 1.98 |
4544 | 7352 | 3.814005 | TTAAGGCCTGTTCGGTATCTC | 57.186 | 47.619 | 5.69 | 0.00 | 34.25 | 2.75 |
4545 | 7353 | 0.460311 | AAGGCCTGTTCGGTATCTCG | 59.540 | 55.000 | 5.69 | 0.00 | 34.25 | 4.04 |
4546 | 7354 | 1.591863 | GGCCTGTTCGGTATCTCGC | 60.592 | 63.158 | 0.00 | 0.00 | 34.25 | 5.03 |
4547 | 7355 | 1.591863 | GCCTGTTCGGTATCTCGCC | 60.592 | 63.158 | 0.00 | 0.00 | 34.25 | 5.54 |
4548 | 7356 | 1.813859 | CCTGTTCGGTATCTCGCCA | 59.186 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
4549 | 7357 | 0.249073 | CCTGTTCGGTATCTCGCCAG | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4550 | 7358 | 0.456221 | CTGTTCGGTATCTCGCCAGT | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4551 | 7359 | 0.892755 | TGTTCGGTATCTCGCCAGTT | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4552 | 7360 | 1.274167 | TGTTCGGTATCTCGCCAGTTT | 59.726 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
4553 | 7361 | 1.925185 | GTTCGGTATCTCGCCAGTTTC | 59.075 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
4554 | 7362 | 1.179152 | TCGGTATCTCGCCAGTTTCA | 58.821 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4555 | 7363 | 1.546923 | TCGGTATCTCGCCAGTTTCAA | 59.453 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4556 | 7364 | 2.028839 | TCGGTATCTCGCCAGTTTCAAA | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4557 | 7365 | 2.739913 | CGGTATCTCGCCAGTTTCAAAA | 59.260 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
4558 | 7366 | 3.424433 | CGGTATCTCGCCAGTTTCAAAAC | 60.424 | 47.826 | 0.00 | 0.00 | 39.17 | 2.43 |
4560 | 7368 | 4.142881 | GGTATCTCGCCAGTTTCAAAACTC | 60.143 | 45.833 | 5.17 | 0.00 | 45.65 | 3.01 |
4561 | 7369 | 2.218603 | TCTCGCCAGTTTCAAAACTCC | 58.781 | 47.619 | 5.17 | 0.13 | 45.65 | 3.85 |
4562 | 7370 | 0.941542 | TCGCCAGTTTCAAAACTCCG | 59.058 | 50.000 | 5.17 | 10.78 | 45.65 | 4.63 |
4563 | 7371 | 0.660300 | CGCCAGTTTCAAAACTCCGC | 60.660 | 55.000 | 5.17 | 9.01 | 45.65 | 5.54 |
4564 | 7372 | 0.668535 | GCCAGTTTCAAAACTCCGCT | 59.331 | 50.000 | 5.17 | 0.00 | 45.65 | 5.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 2.115343 | ATCTCCCTCGCAAAAAGGAC | 57.885 | 50.000 | 0.00 | 0.00 | 35.83 | 3.85 |
105 | 117 | 5.923684 | CCCGTACAGCAACAAACAAATTATT | 59.076 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
106 | 118 | 5.241949 | TCCCGTACAGCAACAAACAAATTAT | 59.758 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
145 | 337 | 0.317603 | CACACAGCAAGAGCAACTGC | 60.318 | 55.000 | 0.00 | 0.00 | 45.49 | 4.40 |
180 | 1926 | 5.798125 | TGGACATGGAGAGATCATACTTC | 57.202 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
249 | 1995 | 7.012610 | AGTCAAAATGGCATTGGAAAAAGAAAG | 59.987 | 33.333 | 14.47 | 0.00 | 0.00 | 2.62 |
409 | 2812 | 8.993424 | AGCCAATACTATTCTCTCTTTTTCCTA | 58.007 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
410 | 2813 | 7.866870 | AGCCAATACTATTCTCTCTTTTTCCT | 58.133 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
411 | 2814 | 8.512966 | AAGCCAATACTATTCTCTCTTTTTCC | 57.487 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
412 | 2815 | 9.389755 | AGAAGCCAATACTATTCTCTCTTTTTC | 57.610 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
511 | 3132 | 4.082136 | GGATTATCGGTTACTAGGAGGCAG | 60.082 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
576 | 3201 | 2.224018 | CCTGCCTTCTCAGCTAGCTTAG | 60.224 | 54.545 | 16.46 | 17.47 | 32.87 | 2.18 |
577 | 3202 | 1.759445 | CCTGCCTTCTCAGCTAGCTTA | 59.241 | 52.381 | 16.46 | 6.45 | 32.87 | 3.09 |
578 | 3203 | 0.540923 | CCTGCCTTCTCAGCTAGCTT | 59.459 | 55.000 | 16.46 | 0.00 | 32.87 | 3.74 |
621 | 3251 | 5.939883 | AGTGTCAATGCTAGCTTGTGAATTA | 59.060 | 36.000 | 17.23 | 4.45 | 0.00 | 1.40 |
622 | 3252 | 4.763793 | AGTGTCAATGCTAGCTTGTGAATT | 59.236 | 37.500 | 17.23 | 2.96 | 0.00 | 2.17 |
623 | 3253 | 4.330250 | AGTGTCAATGCTAGCTTGTGAAT | 58.670 | 39.130 | 17.23 | 0.00 | 0.00 | 2.57 |
624 | 3254 | 3.743521 | AGTGTCAATGCTAGCTTGTGAA | 58.256 | 40.909 | 17.23 | 0.00 | 0.00 | 3.18 |
692 | 3327 | 0.035915 | GAAGGTGAGGTGAAGGAGGC | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
698 | 3333 | 1.801242 | TGAGGTGAAGGTGAGGTGAA | 58.199 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
699 | 3334 | 1.902508 | GATGAGGTGAAGGTGAGGTGA | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
700 | 3335 | 1.625315 | TGATGAGGTGAAGGTGAGGTG | 59.375 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
701 | 3336 | 2.030027 | TGATGAGGTGAAGGTGAGGT | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
702 | 3337 | 2.482664 | CGATGATGAGGTGAAGGTGAGG | 60.483 | 54.545 | 0.00 | 0.00 | 0.00 | 3.86 |
703 | 3338 | 2.428530 | TCGATGATGAGGTGAAGGTGAG | 59.571 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
704 | 3339 | 2.456577 | TCGATGATGAGGTGAAGGTGA | 58.543 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
705 | 3340 | 2.967599 | TCGATGATGAGGTGAAGGTG | 57.032 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
706 | 3341 | 2.366916 | GGATCGATGATGAGGTGAAGGT | 59.633 | 50.000 | 0.54 | 0.00 | 0.00 | 3.50 |
707 | 3342 | 2.366590 | TGGATCGATGATGAGGTGAAGG | 59.633 | 50.000 | 0.54 | 0.00 | 0.00 | 3.46 |
708 | 3343 | 3.740631 | TGGATCGATGATGAGGTGAAG | 57.259 | 47.619 | 0.54 | 0.00 | 0.00 | 3.02 |
709 | 3344 | 3.642848 | TGATGGATCGATGATGAGGTGAA | 59.357 | 43.478 | 0.54 | 0.00 | 0.00 | 3.18 |
829 | 3496 | 2.355481 | GAGGACACCGCGTTCGTT | 60.355 | 61.111 | 4.92 | 0.00 | 0.00 | 3.85 |
830 | 3497 | 4.695231 | CGAGGACACCGCGTTCGT | 62.695 | 66.667 | 4.92 | 0.00 | 41.64 | 3.85 |
831 | 3498 | 4.394078 | TCGAGGACACCGCGTTCG | 62.394 | 66.667 | 4.92 | 4.78 | 46.34 | 3.95 |
832 | 3499 | 2.804090 | GTCGAGGACACCGCGTTC | 60.804 | 66.667 | 4.92 | 0.00 | 46.34 | 3.95 |
833 | 3500 | 3.264866 | GAGTCGAGGACACCGCGTT | 62.265 | 63.158 | 4.92 | 0.00 | 46.34 | 4.84 |
871 | 3538 | 2.267961 | GGTTGTAGGTGGGCGGAG | 59.732 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
875 | 3542 | 2.414658 | TTTCGGGGTTGTAGGTGGGC | 62.415 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
950 | 3617 | 1.229400 | TACGGGTGGAGGGAGCTTT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
955 | 3622 | 1.382146 | GGATGTACGGGTGGAGGGA | 60.382 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
963 | 3637 | 0.744874 | AGACGACATGGATGTACGGG | 59.255 | 55.000 | 0.00 | 0.04 | 41.95 | 5.28 |
966 | 3640 | 2.034812 | GGAGGAGACGACATGGATGTAC | 59.965 | 54.545 | 0.00 | 0.00 | 41.95 | 2.90 |
1044 | 3718 | 4.444081 | ACGAGGAGGACGGGGAGG | 62.444 | 72.222 | 0.00 | 0.00 | 34.93 | 4.30 |
1045 | 3719 | 2.912987 | ATCACGAGGAGGACGGGGAG | 62.913 | 65.000 | 0.00 | 0.00 | 34.75 | 4.30 |
1046 | 3720 | 2.905935 | GATCACGAGGAGGACGGGGA | 62.906 | 65.000 | 0.00 | 0.00 | 34.75 | 4.81 |
1047 | 3721 | 2.442272 | ATCACGAGGAGGACGGGG | 60.442 | 66.667 | 0.00 | 0.00 | 34.75 | 5.73 |
1048 | 3722 | 2.835705 | CGATCACGAGGAGGACGGG | 61.836 | 68.421 | 0.00 | 0.00 | 42.66 | 5.28 |
1049 | 3723 | 2.716244 | CGATCACGAGGAGGACGG | 59.284 | 66.667 | 0.00 | 0.00 | 42.66 | 4.79 |
1050 | 3724 | 2.024871 | GCGATCACGAGGAGGACG | 59.975 | 66.667 | 0.00 | 0.00 | 42.66 | 4.79 |
1051 | 3725 | 1.668101 | AAGGCGATCACGAGGAGGAC | 61.668 | 60.000 | 0.00 | 0.00 | 42.66 | 3.85 |
1052 | 3726 | 1.379977 | AAGGCGATCACGAGGAGGA | 60.380 | 57.895 | 0.00 | 0.00 | 42.66 | 3.71 |
1254 | 3940 | 3.546543 | GGGATGTCGGCCGATGGA | 61.547 | 66.667 | 33.58 | 18.87 | 0.00 | 3.41 |
1257 | 3943 | 2.768344 | AAGGGGATGTCGGCCGAT | 60.768 | 61.111 | 33.58 | 17.58 | 0.00 | 4.18 |
1392 | 4078 | 2.520982 | TAGATGCGCCGGCCTACT | 60.521 | 61.111 | 23.46 | 17.06 | 38.85 | 2.57 |
1692 | 4378 | 3.716195 | CCCATCCTGTCCACGGCA | 61.716 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
2179 | 4867 | 0.321564 | TTCTTCGCATCACCACCCTG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2473 | 5164 | 3.760035 | GGCCTCCTCAGCGAACGA | 61.760 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2481 | 5172 | 2.066393 | CCCGATCTTGGCCTCCTCA | 61.066 | 63.158 | 3.32 | 0.00 | 0.00 | 3.86 |
3208 | 5958 | 2.159379 | TGTCGAGGATCTTGTCGATGTG | 60.159 | 50.000 | 15.20 | 0.00 | 46.22 | 3.21 |
3492 | 6242 | 1.800315 | GAAGCTGAACTCGCGCGTA | 60.800 | 57.895 | 30.98 | 15.53 | 0.00 | 4.42 |
3530 | 6280 | 1.448540 | GACCTGGCATGTCCGACTG | 60.449 | 63.158 | 11.36 | 0.00 | 37.80 | 3.51 |
3531 | 6281 | 2.660064 | GGACCTGGCATGTCCGACT | 61.660 | 63.158 | 23.32 | 0.00 | 42.63 | 4.18 |
3581 | 6331 | 5.175856 | CACAGACACCGTAAAAGAAGAAGAG | 59.824 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3582 | 6332 | 5.047847 | CACAGACACCGTAAAAGAAGAAGA | 58.952 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
3583 | 6333 | 4.809426 | ACACAGACACCGTAAAAGAAGAAG | 59.191 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
3658 | 6415 | 9.784531 | TTATGAGAACTTGTTTCTGATTTCTCT | 57.215 | 29.630 | 9.79 | 0.70 | 45.24 | 3.10 |
3693 | 6450 | 5.387788 | CAAACCCATTGATCCATCCATCTA | 58.612 | 41.667 | 0.00 | 0.00 | 41.85 | 1.98 |
3756 | 6517 | 4.455533 | TGTGGTTTCATTTCATCTTCTCGG | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3788 | 6549 | 6.070424 | ACTCCGATTTCCCTAATTCTACACAA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
3789 | 6550 | 5.424252 | ACTCCGATTTCCCTAATTCTACACA | 59.576 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3790 | 6551 | 5.915175 | ACTCCGATTTCCCTAATTCTACAC | 58.085 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3792 | 6553 | 7.146648 | CACTACTCCGATTTCCCTAATTCTAC | 58.853 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
3796 | 6557 | 4.720273 | ACCACTACTCCGATTTCCCTAATT | 59.280 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
3797 | 6558 | 4.101119 | CACCACTACTCCGATTTCCCTAAT | 59.899 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
3798 | 6559 | 3.449737 | CACCACTACTCCGATTTCCCTAA | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
3799 | 6560 | 3.028850 | CACCACTACTCCGATTTCCCTA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3800 | 6561 | 1.831736 | CACCACTACTCCGATTTCCCT | 59.168 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
3808 | 6569 | 0.395312 | ACAAACCCACCACTACTCCG | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3809 | 6570 | 2.636403 | AGTACAAACCCACCACTACTCC | 59.364 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3810 | 6571 | 4.347360 | AAGTACAAACCCACCACTACTC | 57.653 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
3832 | 6597 | 6.595682 | ACGTATAGCTCTACCTACAACCTAA | 58.404 | 40.000 | 3.86 | 0.00 | 0.00 | 2.69 |
3852 | 6618 | 7.536895 | TGTTTGTTGAGCTTTTAAGTACGTA | 57.463 | 32.000 | 0.00 | 0.00 | 0.00 | 3.57 |
3853 | 6619 | 6.425577 | TGTTTGTTGAGCTTTTAAGTACGT | 57.574 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
3854 | 6620 | 5.395486 | GCTGTTTGTTGAGCTTTTAAGTACG | 59.605 | 40.000 | 0.00 | 0.00 | 32.12 | 3.67 |
3855 | 6621 | 6.414987 | CAGCTGTTTGTTGAGCTTTTAAGTAC | 59.585 | 38.462 | 5.25 | 0.00 | 43.15 | 2.73 |
4021 | 6804 | 8.215926 | AGTGTTTATACAACAACTACTTGCAA | 57.784 | 30.769 | 0.00 | 0.00 | 35.69 | 4.08 |
4039 | 6822 | 4.443621 | TCATGTGGACGTTCAAGTGTTTA | 58.556 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
4107 | 6910 | 5.050837 | GGTCTTTTAAGTTTCGACGTAAGCA | 60.051 | 40.000 | 0.00 | 0.00 | 45.62 | 3.91 |
4121 | 6924 | 7.277174 | ACTGTCCTTGAAATGGTCTTTTAAG | 57.723 | 36.000 | 0.00 | 0.00 | 31.98 | 1.85 |
4124 | 6927 | 5.682212 | GCAACTGTCCTTGAAATGGTCTTTT | 60.682 | 40.000 | 0.00 | 0.00 | 31.98 | 2.27 |
4258 | 7066 | 9.794719 | GCTAGTAATTCCTCTGGGTTTATTTAT | 57.205 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4259 | 7067 | 8.215736 | GGCTAGTAATTCCTCTGGGTTTATTTA | 58.784 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
4260 | 7068 | 7.061054 | GGCTAGTAATTCCTCTGGGTTTATTT | 58.939 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
4261 | 7069 | 6.159751 | TGGCTAGTAATTCCTCTGGGTTTATT | 59.840 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
4262 | 7070 | 5.670361 | TGGCTAGTAATTCCTCTGGGTTTAT | 59.330 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4263 | 7071 | 5.034200 | TGGCTAGTAATTCCTCTGGGTTTA | 58.966 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
4264 | 7072 | 3.850173 | TGGCTAGTAATTCCTCTGGGTTT | 59.150 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
4265 | 7073 | 3.200165 | GTGGCTAGTAATTCCTCTGGGTT | 59.800 | 47.826 | 0.00 | 0.00 | 0.00 | 4.11 |
4266 | 7074 | 2.772515 | GTGGCTAGTAATTCCTCTGGGT | 59.227 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
4267 | 7075 | 3.041946 | AGTGGCTAGTAATTCCTCTGGG | 58.958 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4268 | 7076 | 3.964031 | AGAGTGGCTAGTAATTCCTCTGG | 59.036 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
4269 | 7077 | 5.606348 | AAGAGTGGCTAGTAATTCCTCTG | 57.394 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
4270 | 7078 | 5.485708 | ACAAAGAGTGGCTAGTAATTCCTCT | 59.514 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4271 | 7079 | 5.735766 | ACAAAGAGTGGCTAGTAATTCCTC | 58.264 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
4272 | 7080 | 5.763876 | ACAAAGAGTGGCTAGTAATTCCT | 57.236 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
4273 | 7081 | 7.048512 | ACATACAAAGAGTGGCTAGTAATTCC | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
4274 | 7082 | 7.224949 | GGACATACAAAGAGTGGCTAGTAATTC | 59.775 | 40.741 | 0.00 | 0.00 | 0.00 | 2.17 |
4275 | 7083 | 7.048512 | GGACATACAAAGAGTGGCTAGTAATT | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
4276 | 7084 | 6.583562 | GGACATACAAAGAGTGGCTAGTAAT | 58.416 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
4277 | 7085 | 5.393787 | CGGACATACAAAGAGTGGCTAGTAA | 60.394 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4278 | 7086 | 4.097437 | CGGACATACAAAGAGTGGCTAGTA | 59.903 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
4279 | 7087 | 3.119101 | CGGACATACAAAGAGTGGCTAGT | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4280 | 7088 | 3.448686 | CGGACATACAAAGAGTGGCTAG | 58.551 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
4281 | 7089 | 2.418197 | GCGGACATACAAAGAGTGGCTA | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
4282 | 7090 | 1.676014 | GCGGACATACAAAGAGTGGCT | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
4283 | 7091 | 0.727398 | GCGGACATACAAAGAGTGGC | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
4284 | 7092 | 2.002586 | CAGCGGACATACAAAGAGTGG | 58.997 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4285 | 7093 | 2.668457 | GACAGCGGACATACAAAGAGTG | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4286 | 7094 | 2.299013 | TGACAGCGGACATACAAAGAGT | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
4287 | 7095 | 2.959516 | TGACAGCGGACATACAAAGAG | 58.040 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
4288 | 7096 | 3.394674 | TTGACAGCGGACATACAAAGA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
4289 | 7097 | 3.745975 | TCTTTGACAGCGGACATACAAAG | 59.254 | 43.478 | 0.00 | 0.00 | 42.71 | 2.77 |
4290 | 7098 | 3.734463 | TCTTTGACAGCGGACATACAAA | 58.266 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
4291 | 7099 | 3.394674 | TCTTTGACAGCGGACATACAA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 2.41 |
4292 | 7100 | 3.610040 | ATCTTTGACAGCGGACATACA | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
4293 | 7101 | 3.802685 | GGTATCTTTGACAGCGGACATAC | 59.197 | 47.826 | 0.00 | 0.00 | 0.00 | 2.39 |
4294 | 7102 | 3.490249 | CGGTATCTTTGACAGCGGACATA | 60.490 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
4295 | 7103 | 2.738643 | CGGTATCTTTGACAGCGGACAT | 60.739 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4296 | 7104 | 1.403647 | CGGTATCTTTGACAGCGGACA | 60.404 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
4297 | 7105 | 1.135199 | TCGGTATCTTTGACAGCGGAC | 60.135 | 52.381 | 0.00 | 0.00 | 34.18 | 4.79 |
4298 | 7106 | 1.135199 | GTCGGTATCTTTGACAGCGGA | 60.135 | 52.381 | 0.00 | 0.00 | 34.18 | 5.54 |
4299 | 7107 | 1.278238 | GTCGGTATCTTTGACAGCGG | 58.722 | 55.000 | 0.00 | 0.00 | 34.18 | 5.52 |
4300 | 7108 | 1.654105 | GTGTCGGTATCTTTGACAGCG | 59.346 | 52.381 | 0.00 | 0.00 | 42.77 | 5.18 |
4301 | 7109 | 2.683968 | TGTGTCGGTATCTTTGACAGC | 58.316 | 47.619 | 0.00 | 0.00 | 42.77 | 4.40 |
4302 | 7110 | 5.407502 | TGTATGTGTCGGTATCTTTGACAG | 58.592 | 41.667 | 0.00 | 0.00 | 42.77 | 3.51 |
4303 | 7111 | 5.394224 | TGTATGTGTCGGTATCTTTGACA | 57.606 | 39.130 | 0.00 | 0.00 | 40.12 | 3.58 |
4304 | 7112 | 6.903883 | ATTGTATGTGTCGGTATCTTTGAC | 57.096 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
4305 | 7113 | 7.778083 | AGTATTGTATGTGTCGGTATCTTTGA | 58.222 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
4306 | 7114 | 7.169308 | GGAGTATTGTATGTGTCGGTATCTTTG | 59.831 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
4307 | 7115 | 7.208080 | GGAGTATTGTATGTGTCGGTATCTTT | 58.792 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
4308 | 7116 | 6.239232 | GGGAGTATTGTATGTGTCGGTATCTT | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 2.40 |
4309 | 7117 | 5.243283 | GGGAGTATTGTATGTGTCGGTATCT | 59.757 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4310 | 7118 | 5.243283 | AGGGAGTATTGTATGTGTCGGTATC | 59.757 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4311 | 7119 | 5.145564 | AGGGAGTATTGTATGTGTCGGTAT | 58.854 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
4312 | 7120 | 4.539726 | AGGGAGTATTGTATGTGTCGGTA | 58.460 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
4313 | 7121 | 3.371965 | AGGGAGTATTGTATGTGTCGGT | 58.628 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
4314 | 7122 | 3.243771 | GGAGGGAGTATTGTATGTGTCGG | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
4315 | 7123 | 3.550233 | CGGAGGGAGTATTGTATGTGTCG | 60.550 | 52.174 | 0.00 | 0.00 | 0.00 | 4.35 |
4316 | 7124 | 3.383825 | ACGGAGGGAGTATTGTATGTGTC | 59.616 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
4317 | 7125 | 3.371965 | ACGGAGGGAGTATTGTATGTGT | 58.628 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
4318 | 7126 | 4.099573 | AGAACGGAGGGAGTATTGTATGTG | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
4319 | 7127 | 4.287552 | AGAACGGAGGGAGTATTGTATGT | 58.712 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
4320 | 7128 | 4.939052 | AGAACGGAGGGAGTATTGTATG | 57.061 | 45.455 | 0.00 | 0.00 | 0.00 | 2.39 |
4321 | 7129 | 7.427989 | TTTTAGAACGGAGGGAGTATTGTAT | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4322 | 7130 | 6.855763 | TTTTAGAACGGAGGGAGTATTGTA | 57.144 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
4323 | 7131 | 5.750352 | TTTTAGAACGGAGGGAGTATTGT | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
4324 | 7132 | 7.723324 | TCTATTTTAGAACGGAGGGAGTATTG | 58.277 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
4325 | 7133 | 7.909485 | TCTATTTTAGAACGGAGGGAGTATT | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
4326 | 7134 | 7.728981 | TCATCTATTTTAGAACGGAGGGAGTAT | 59.271 | 37.037 | 0.00 | 0.00 | 38.50 | 2.12 |
4327 | 7135 | 7.014038 | GTCATCTATTTTAGAACGGAGGGAGTA | 59.986 | 40.741 | 0.00 | 0.00 | 38.50 | 2.59 |
4328 | 7136 | 5.897824 | TCATCTATTTTAGAACGGAGGGAGT | 59.102 | 40.000 | 0.00 | 0.00 | 38.50 | 3.85 |
4329 | 7137 | 6.041069 | AGTCATCTATTTTAGAACGGAGGGAG | 59.959 | 42.308 | 0.00 | 0.00 | 38.50 | 4.30 |
4330 | 7138 | 5.897824 | AGTCATCTATTTTAGAACGGAGGGA | 59.102 | 40.000 | 0.00 | 0.00 | 38.50 | 4.20 |
4331 | 7139 | 6.163135 | AGTCATCTATTTTAGAACGGAGGG | 57.837 | 41.667 | 0.00 | 0.00 | 38.50 | 4.30 |
4332 | 7140 | 6.806751 | TGAGTCATCTATTTTAGAACGGAGG | 58.193 | 40.000 | 0.00 | 0.00 | 38.50 | 4.30 |
4333 | 7141 | 8.879342 | ATTGAGTCATCTATTTTAGAACGGAG | 57.121 | 34.615 | 0.00 | 0.00 | 38.50 | 4.63 |
4334 | 7142 | 9.667107 | AAATTGAGTCATCTATTTTAGAACGGA | 57.333 | 29.630 | 0.00 | 0.00 | 37.52 | 4.69 |
4412 | 7220 | 9.182214 | TCGATCCAAAAACTACTACTAGTATGT | 57.818 | 33.333 | 2.33 | 6.64 | 32.46 | 2.29 |
4416 | 7224 | 9.406113 | ACTATCGATCCAAAAACTACTACTAGT | 57.594 | 33.333 | 0.00 | 0.00 | 34.38 | 2.57 |
4419 | 7227 | 8.529476 | ACAACTATCGATCCAAAAACTACTACT | 58.471 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4420 | 7228 | 8.699283 | ACAACTATCGATCCAAAAACTACTAC | 57.301 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
4422 | 7230 | 9.886132 | ATTACAACTATCGATCCAAAAACTACT | 57.114 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4425 | 7233 | 9.840427 | CAAATTACAACTATCGATCCAAAAACT | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4426 | 7234 | 9.834628 | TCAAATTACAACTATCGATCCAAAAAC | 57.165 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
4427 | 7235 | 9.834628 | GTCAAATTACAACTATCGATCCAAAAA | 57.165 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
4428 | 7236 | 8.455682 | GGTCAAATTACAACTATCGATCCAAAA | 58.544 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
4429 | 7237 | 7.608376 | TGGTCAAATTACAACTATCGATCCAAA | 59.392 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
4430 | 7238 | 7.106890 | TGGTCAAATTACAACTATCGATCCAA | 58.893 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
4431 | 7239 | 6.645306 | TGGTCAAATTACAACTATCGATCCA | 58.355 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4432 | 7240 | 6.761714 | ACTGGTCAAATTACAACTATCGATCC | 59.238 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
4433 | 7241 | 7.772332 | ACTGGTCAAATTACAACTATCGATC | 57.228 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4434 | 7242 | 9.661563 | TTTACTGGTCAAATTACAACTATCGAT | 57.338 | 29.630 | 2.16 | 2.16 | 0.00 | 3.59 |
4435 | 7243 | 9.491675 | TTTTACTGGTCAAATTACAACTATCGA | 57.508 | 29.630 | 0.00 | 0.00 | 0.00 | 3.59 |
4436 | 7244 | 9.537848 | GTTTTACTGGTCAAATTACAACTATCG | 57.462 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
4446 | 7254 | 9.088987 | AGGATGTTATGTTTTACTGGTCAAATT | 57.911 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4447 | 7255 | 8.650143 | AGGATGTTATGTTTTACTGGTCAAAT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
4448 | 7256 | 9.747898 | ATAGGATGTTATGTTTTACTGGTCAAA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4460 | 7268 | 9.578576 | TCCTACGTACTTATAGGATGTTATGTT | 57.421 | 33.333 | 11.44 | 0.00 | 41.71 | 2.71 |
4470 | 7278 | 9.574458 | CATGAAATCATCCTACGTACTTATAGG | 57.426 | 37.037 | 7.92 | 7.92 | 39.58 | 2.57 |
4473 | 7281 | 9.078990 | TCTCATGAAATCATCCTACGTACTTAT | 57.921 | 33.333 | 0.00 | 0.00 | 33.61 | 1.73 |
4474 | 7282 | 8.350722 | GTCTCATGAAATCATCCTACGTACTTA | 58.649 | 37.037 | 0.00 | 0.00 | 33.61 | 2.24 |
4475 | 7283 | 7.147897 | TGTCTCATGAAATCATCCTACGTACTT | 60.148 | 37.037 | 0.00 | 0.00 | 33.61 | 2.24 |
4476 | 7284 | 6.321435 | TGTCTCATGAAATCATCCTACGTACT | 59.679 | 38.462 | 0.00 | 0.00 | 33.61 | 2.73 |
4477 | 7285 | 6.504398 | TGTCTCATGAAATCATCCTACGTAC | 58.496 | 40.000 | 0.00 | 0.00 | 33.61 | 3.67 |
4478 | 7286 | 6.709018 | TGTCTCATGAAATCATCCTACGTA | 57.291 | 37.500 | 0.00 | 0.00 | 33.61 | 3.57 |
4479 | 7287 | 5.595885 | CTGTCTCATGAAATCATCCTACGT | 58.404 | 41.667 | 0.00 | 0.00 | 33.61 | 3.57 |
4480 | 7288 | 4.447054 | GCTGTCTCATGAAATCATCCTACG | 59.553 | 45.833 | 0.00 | 0.00 | 33.61 | 3.51 |
4481 | 7289 | 5.363101 | TGCTGTCTCATGAAATCATCCTAC | 58.637 | 41.667 | 0.00 | 0.00 | 33.61 | 3.18 |
4482 | 7290 | 5.619132 | TGCTGTCTCATGAAATCATCCTA | 57.381 | 39.130 | 0.00 | 0.00 | 33.61 | 2.94 |
4483 | 7291 | 4.498894 | TGCTGTCTCATGAAATCATCCT | 57.501 | 40.909 | 0.00 | 0.00 | 33.61 | 3.24 |
4484 | 7292 | 4.201990 | GGTTGCTGTCTCATGAAATCATCC | 60.202 | 45.833 | 0.00 | 0.00 | 33.61 | 3.51 |
4485 | 7293 | 4.397103 | TGGTTGCTGTCTCATGAAATCATC | 59.603 | 41.667 | 0.00 | 0.00 | 33.61 | 2.92 |
4486 | 7294 | 4.338012 | TGGTTGCTGTCTCATGAAATCAT | 58.662 | 39.130 | 0.00 | 0.00 | 36.96 | 2.45 |
4487 | 7295 | 3.753815 | TGGTTGCTGTCTCATGAAATCA | 58.246 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4488 | 7296 | 4.479619 | GTTGGTTGCTGTCTCATGAAATC | 58.520 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4489 | 7297 | 3.256631 | GGTTGGTTGCTGTCTCATGAAAT | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4490 | 7298 | 2.622942 | GGTTGGTTGCTGTCTCATGAAA | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4491 | 7299 | 2.229792 | GGTTGGTTGCTGTCTCATGAA | 58.770 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4492 | 7300 | 1.877680 | CGGTTGGTTGCTGTCTCATGA | 60.878 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
4493 | 7301 | 0.518636 | CGGTTGGTTGCTGTCTCATG | 59.481 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4494 | 7302 | 0.396435 | TCGGTTGGTTGCTGTCTCAT | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4495 | 7303 | 0.531974 | GTCGGTTGGTTGCTGTCTCA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4496 | 7304 | 1.228657 | GGTCGGTTGGTTGCTGTCTC | 61.229 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4497 | 7305 | 1.227853 | GGTCGGTTGGTTGCTGTCT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
4498 | 7306 | 1.098712 | TTGGTCGGTTGGTTGCTGTC | 61.099 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4499 | 7307 | 1.077357 | TTGGTCGGTTGGTTGCTGT | 60.077 | 52.632 | 0.00 | 0.00 | 0.00 | 4.40 |
4500 | 7308 | 1.654220 | CTTGGTCGGTTGGTTGCTG | 59.346 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
4501 | 7309 | 1.528309 | CCTTGGTCGGTTGGTTGCT | 60.528 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
4502 | 7310 | 1.388837 | AACCTTGGTCGGTTGGTTGC | 61.389 | 55.000 | 0.00 | 0.00 | 45.24 | 4.17 |
4503 | 7311 | 1.970092 | TAACCTTGGTCGGTTGGTTG | 58.030 | 50.000 | 5.53 | 0.00 | 46.34 | 3.77 |
4504 | 7312 | 2.732844 | TTAACCTTGGTCGGTTGGTT | 57.267 | 45.000 | 5.53 | 0.00 | 46.34 | 3.67 |
4505 | 7313 | 2.963599 | ATTAACCTTGGTCGGTTGGT | 57.036 | 45.000 | 5.53 | 0.00 | 46.34 | 3.67 |
4506 | 7314 | 4.157105 | CCTTAATTAACCTTGGTCGGTTGG | 59.843 | 45.833 | 5.53 | 0.00 | 46.34 | 3.77 |
4507 | 7315 | 4.380128 | GCCTTAATTAACCTTGGTCGGTTG | 60.380 | 45.833 | 5.53 | 0.00 | 46.34 | 3.77 |
4509 | 7317 | 3.349927 | GCCTTAATTAACCTTGGTCGGT | 58.650 | 45.455 | 0.00 | 0.00 | 39.48 | 4.69 |
4510 | 7318 | 2.686405 | GGCCTTAATTAACCTTGGTCGG | 59.314 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4511 | 7319 | 3.377172 | CAGGCCTTAATTAACCTTGGTCG | 59.623 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
4512 | 7320 | 4.341487 | ACAGGCCTTAATTAACCTTGGTC | 58.659 | 43.478 | 0.00 | 1.95 | 0.00 | 4.02 |
4513 | 7321 | 4.397919 | ACAGGCCTTAATTAACCTTGGT | 57.602 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
4514 | 7322 | 4.142469 | CGAACAGGCCTTAATTAACCTTGG | 60.142 | 45.833 | 0.00 | 1.61 | 0.00 | 3.61 |
4515 | 7323 | 4.142469 | CCGAACAGGCCTTAATTAACCTTG | 60.142 | 45.833 | 0.00 | 3.98 | 0.00 | 3.61 |
4516 | 7324 | 4.014406 | CCGAACAGGCCTTAATTAACCTT | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
4517 | 7325 | 3.009805 | ACCGAACAGGCCTTAATTAACCT | 59.990 | 43.478 | 0.00 | 2.27 | 46.52 | 3.50 |
4518 | 7326 | 3.349927 | ACCGAACAGGCCTTAATTAACC | 58.650 | 45.455 | 0.00 | 0.00 | 46.52 | 2.85 |
4519 | 7327 | 6.053650 | AGATACCGAACAGGCCTTAATTAAC | 58.946 | 40.000 | 0.00 | 0.00 | 46.52 | 2.01 |
4520 | 7328 | 6.243216 | AGATACCGAACAGGCCTTAATTAA | 57.757 | 37.500 | 0.00 | 0.00 | 46.52 | 1.40 |
4521 | 7329 | 5.508489 | CGAGATACCGAACAGGCCTTAATTA | 60.508 | 44.000 | 0.00 | 0.00 | 46.52 | 1.40 |
4522 | 7330 | 4.704965 | GAGATACCGAACAGGCCTTAATT | 58.295 | 43.478 | 0.00 | 0.00 | 46.52 | 1.40 |
4523 | 7331 | 3.243771 | CGAGATACCGAACAGGCCTTAAT | 60.244 | 47.826 | 0.00 | 0.00 | 46.52 | 1.40 |
4524 | 7332 | 2.100252 | CGAGATACCGAACAGGCCTTAA | 59.900 | 50.000 | 0.00 | 0.00 | 46.52 | 1.85 |
4525 | 7333 | 1.679680 | CGAGATACCGAACAGGCCTTA | 59.320 | 52.381 | 0.00 | 0.00 | 46.52 | 2.69 |
4526 | 7334 | 0.460311 | CGAGATACCGAACAGGCCTT | 59.540 | 55.000 | 0.00 | 0.00 | 46.52 | 4.35 |
4527 | 7335 | 2.017559 | GCGAGATACCGAACAGGCCT | 62.018 | 60.000 | 0.00 | 0.00 | 46.52 | 5.19 |
4528 | 7336 | 1.591863 | GCGAGATACCGAACAGGCC | 60.592 | 63.158 | 0.00 | 0.00 | 46.52 | 5.19 |
4529 | 7337 | 1.591863 | GGCGAGATACCGAACAGGC | 60.592 | 63.158 | 0.00 | 0.00 | 46.52 | 4.85 |
4531 | 7339 | 0.456221 | ACTGGCGAGATACCGAACAG | 59.544 | 55.000 | 1.44 | 0.00 | 39.88 | 3.16 |
4532 | 7340 | 0.892755 | AACTGGCGAGATACCGAACA | 59.107 | 50.000 | 1.44 | 0.00 | 0.00 | 3.18 |
4533 | 7341 | 1.925185 | GAAACTGGCGAGATACCGAAC | 59.075 | 52.381 | 1.44 | 0.00 | 0.00 | 3.95 |
4534 | 7342 | 1.546923 | TGAAACTGGCGAGATACCGAA | 59.453 | 47.619 | 1.44 | 0.00 | 0.00 | 4.30 |
4535 | 7343 | 1.179152 | TGAAACTGGCGAGATACCGA | 58.821 | 50.000 | 1.44 | 0.00 | 0.00 | 4.69 |
4536 | 7344 | 2.004583 | TTGAAACTGGCGAGATACCG | 57.995 | 50.000 | 1.44 | 0.00 | 0.00 | 4.02 |
4537 | 7345 | 3.751698 | AGTTTTGAAACTGGCGAGATACC | 59.248 | 43.478 | 1.44 | 0.00 | 46.80 | 2.73 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.