Multiple sequence alignment - TraesCS7B01G221700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G221700 chr7B 100.000 3864 0 0 1 3864 413578181 413582044 0.000000e+00 7136.0
1 TraesCS7B01G221700 chr7D 93.189 3465 118 40 444 3864 404061943 404065333 0.000000e+00 4983.0
2 TraesCS7B01G221700 chr7D 91.768 413 15 7 1 403 404061537 404061940 1.210000e-154 556.0
3 TraesCS7B01G221700 chr7A 94.801 2885 97 33 988 3864 462984530 462987369 0.000000e+00 4447.0
4 TraesCS7B01G221700 chr7A 85.628 828 54 21 25 807 462983314 462984121 0.000000e+00 809.0
5 TraesCS7B01G221700 chr7A 97.500 40 1 0 1 40 462983261 462983300 6.930000e-08 69.4
6 TraesCS7B01G221700 chr1A 95.775 71 3 0 3580 3650 432732279 432732349 8.770000e-22 115.0
7 TraesCS7B01G221700 chr6D 88.889 45 5 0 3596 3640 24850145 24850189 5.390000e-04 56.5
8 TraesCS7B01G221700 chr5D 100.000 28 0 0 540 567 552298579 552298552 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G221700 chr7B 413578181 413582044 3863 False 7136.000000 7136 100.0000 1 3864 1 chr7B.!!$F1 3863
1 TraesCS7B01G221700 chr7D 404061537 404065333 3796 False 2769.500000 4983 92.4785 1 3864 2 chr7D.!!$F1 3863
2 TraesCS7B01G221700 chr7A 462983261 462987369 4108 False 1775.133333 4447 92.6430 1 3864 3 chr7A.!!$F1 3863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1314 0.179034 ATTTGATCCTCGGCCTGCTC 60.179 55.0 0.0 0.0 0.0 4.26 F
1679 2010 0.729116 CAGTCACCGAATCATGGCAC 59.271 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2836 3191 0.031585 CCAACACCGTCGAAGTGAGA 59.968 55.0 20.4 0.0 38.63 3.27 R
3382 3745 0.179078 CTCATGGACCAGAGCAGAGC 60.179 60.0 0.0 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 0.527385 CAAACCAACCAACGGCACAG 60.527 55.000 0.00 0.00 0.00 3.66
94 125 4.653888 CCCCCGTTCACCACCACC 62.654 72.222 0.00 0.00 0.00 4.61
111 142 1.048601 ACCATCACGTGTCCTCTTGT 58.951 50.000 16.51 1.94 0.00 3.16
320 358 2.419324 CCGTCAGACACACCTAGTACTC 59.581 54.545 0.00 0.00 0.00 2.59
403 442 6.350949 CGTTTCTTCCCACCCAAATCAATTAT 60.351 38.462 0.00 0.00 0.00 1.28
406 445 8.671987 TTCTTCCCACCCAAATCAATTATTAA 57.328 30.769 0.00 0.00 0.00 1.40
407 446 8.305046 TCTTCCCACCCAAATCAATTATTAAG 57.695 34.615 0.00 0.00 0.00 1.85
408 447 7.898636 TCTTCCCACCCAAATCAATTATTAAGT 59.101 33.333 0.00 0.00 0.00 2.24
409 448 8.442660 TTCCCACCCAAATCAATTATTAAGTT 57.557 30.769 0.00 0.00 0.00 2.66
410 449 9.548631 TTCCCACCCAAATCAATTATTAAGTTA 57.451 29.630 0.00 0.00 0.00 2.24
411 450 8.973182 TCCCACCCAAATCAATTATTAAGTTAC 58.027 33.333 0.00 0.00 0.00 2.50
483 526 9.442047 AAATAAGATCATCGATCAATTACTCCC 57.558 33.333 0.00 0.00 41.12 4.30
564 616 2.226149 GAAGACGAGGAGGGGGAGGA 62.226 65.000 0.00 0.00 0.00 3.71
587 639 2.863809 CCAGCTCCCATAAATACCCAC 58.136 52.381 0.00 0.00 0.00 4.61
588 640 2.489073 CCAGCTCCCATAAATACCCACC 60.489 54.545 0.00 0.00 0.00 4.61
589 641 2.443255 CAGCTCCCATAAATACCCACCT 59.557 50.000 0.00 0.00 0.00 4.00
590 642 2.711547 AGCTCCCATAAATACCCACCTC 59.288 50.000 0.00 0.00 0.00 3.85
591 643 2.224793 GCTCCCATAAATACCCACCTCC 60.225 54.545 0.00 0.00 0.00 4.30
592 644 3.053077 CTCCCATAAATACCCACCTCCA 58.947 50.000 0.00 0.00 0.00 3.86
627 679 2.020287 GAGTCGAGTCGAGTCGCG 59.980 66.667 32.58 15.46 44.42 5.87
628 680 2.442999 GAGTCGAGTCGAGTCGCGA 61.443 63.158 32.58 17.49 44.42 5.87
697 766 2.425102 CGTATTTCCTCCTCCTCCTCCT 60.425 54.545 0.00 0.00 0.00 3.69
718 787 4.243270 CTCCTTACCCACTAAGAAACACG 58.757 47.826 0.00 0.00 34.69 4.49
783 867 1.746517 CCGCTATAAAGGCCCTCGT 59.253 57.895 0.00 0.00 0.00 4.18
824 908 0.469144 TGTCCACCCTTGGCCTTTTC 60.469 55.000 3.32 0.00 43.56 2.29
828 912 3.747976 CCCTTGGCCTTTTCCGCG 61.748 66.667 3.32 0.00 0.00 6.46
829 913 4.419939 CCTTGGCCTTTTCCGCGC 62.420 66.667 3.32 0.00 0.00 6.86
859 943 1.525306 GCCCGGTTAGGATTTCCCG 60.525 63.158 0.00 0.00 45.00 5.14
864 948 1.093496 GGTTAGGATTTCCCGTGCCG 61.093 60.000 0.00 0.00 40.87 5.69
971 1302 3.649986 CCCGCGCCCGATTTGATC 61.650 66.667 0.00 0.00 36.29 2.92
983 1314 0.179034 ATTTGATCCTCGGCCTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
1398 1729 2.269241 GAGTTCCCCTTCCAGCGG 59.731 66.667 0.00 0.00 0.00 5.52
1434 1765 2.721167 CCTCTTCATGACCCGCGGA 61.721 63.158 30.73 7.23 0.00 5.54
1476 1807 2.815647 GAGCGCTTCTTCCACGGG 60.816 66.667 13.26 0.00 0.00 5.28
1588 1919 2.303022 CCCAGCGAGGTACCATAATCAT 59.697 50.000 15.94 0.00 34.66 2.45
1593 1924 4.021016 AGCGAGGTACCATAATCATTCTCC 60.021 45.833 15.94 0.00 0.00 3.71
1594 1925 4.021016 GCGAGGTACCATAATCATTCTCCT 60.021 45.833 15.94 0.00 0.00 3.69
1595 1926 5.715070 CGAGGTACCATAATCATTCTCCTC 58.285 45.833 15.94 0.00 36.56 3.71
1596 1927 5.243954 CGAGGTACCATAATCATTCTCCTCA 59.756 44.000 15.94 0.00 38.87 3.86
1598 1929 5.905331 AGGTACCATAATCATTCTCCTCACA 59.095 40.000 15.94 0.00 0.00 3.58
1620 1951 9.035890 TCACACTCTCTTCTTTCCTTCATAATA 57.964 33.333 0.00 0.00 0.00 0.98
1621 1952 9.658799 CACACTCTCTTCTTTCCTTCATAATAA 57.341 33.333 0.00 0.00 0.00 1.40
1644 1975 9.886132 ATAATTTACCTGAACTTCATAACTCGT 57.114 29.630 0.00 0.00 0.00 4.18
1646 1977 9.715121 AATTTACCTGAACTTCATAACTCGTAA 57.285 29.630 0.00 0.00 0.00 3.18
1647 1978 8.752766 TTTACCTGAACTTCATAACTCGTAAG 57.247 34.615 0.00 0.00 0.00 2.34
1648 1979 6.342338 ACCTGAACTTCATAACTCGTAAGT 57.658 37.500 0.00 0.00 37.32 2.24
1649 1980 6.388278 ACCTGAACTTCATAACTCGTAAGTC 58.612 40.000 0.00 0.00 33.48 3.01
1650 1981 5.512082 CCTGAACTTCATAACTCGTAAGTCG 59.488 44.000 0.00 0.00 41.41 4.18
1651 1982 6.005583 TGAACTTCATAACTCGTAAGTCGT 57.994 37.500 0.00 0.00 40.80 4.34
1652 1983 7.132694 TGAACTTCATAACTCGTAAGTCGTA 57.867 36.000 0.00 0.00 40.80 3.43
1653 1984 7.584108 TGAACTTCATAACTCGTAAGTCGTAA 58.416 34.615 0.00 0.00 40.80 3.18
1654 1985 8.075574 TGAACTTCATAACTCGTAAGTCGTAAA 58.924 33.333 0.00 0.00 40.80 2.01
1655 1986 8.801715 AACTTCATAACTCGTAAGTCGTAAAA 57.198 30.769 0.00 0.00 40.80 1.52
1656 1987 8.801715 ACTTCATAACTCGTAAGTCGTAAAAA 57.198 30.769 0.00 0.00 40.80 1.94
1657 1988 9.415544 ACTTCATAACTCGTAAGTCGTAAAAAT 57.584 29.630 0.00 0.00 40.80 1.82
1660 1991 8.164153 TCATAACTCGTAAGTCGTAAAAATTGC 58.836 33.333 0.00 0.00 40.80 3.56
1661 1992 5.910637 ACTCGTAAGTCGTAAAAATTGCA 57.089 34.783 0.00 0.00 40.80 4.08
1662 1993 5.912528 ACTCGTAAGTCGTAAAAATTGCAG 58.087 37.500 0.00 0.00 40.80 4.41
1663 1994 5.464389 ACTCGTAAGTCGTAAAAATTGCAGT 59.536 36.000 0.00 0.00 40.80 4.40
1664 1995 5.908106 TCGTAAGTCGTAAAAATTGCAGTC 58.092 37.500 0.00 0.00 40.80 3.51
1665 1996 5.462729 TCGTAAGTCGTAAAAATTGCAGTCA 59.537 36.000 0.00 0.00 40.80 3.41
1666 1997 5.558888 CGTAAGTCGTAAAAATTGCAGTCAC 59.441 40.000 0.00 0.00 34.52 3.67
1671 2002 4.214545 TCGTAAAAATTGCAGTCACCGAAT 59.785 37.500 0.00 0.00 0.00 3.34
1673 2004 4.582701 AAAAATTGCAGTCACCGAATCA 57.417 36.364 0.00 0.00 0.00 2.57
1676 2007 1.452110 TTGCAGTCACCGAATCATGG 58.548 50.000 0.00 0.00 0.00 3.66
1677 2008 1.026182 TGCAGTCACCGAATCATGGC 61.026 55.000 0.00 0.00 0.00 4.40
1679 2010 0.729116 CAGTCACCGAATCATGGCAC 59.271 55.000 0.00 0.00 0.00 5.01
1710 2041 7.809806 AGATTGTTAATTAGTTGAACTGCTTGC 59.190 33.333 8.33 0.95 0.00 4.01
1716 2062 3.502191 AGTTGAACTGCTTGCGAAAAA 57.498 38.095 0.00 0.00 0.00 1.94
2026 2379 3.644966 TGGATGTCTTATGGTTGGGAC 57.355 47.619 0.00 0.00 0.00 4.46
2160 2515 1.746615 CCCTCCATGTGCGGTTCTG 60.747 63.158 0.00 0.00 0.00 3.02
2267 2622 1.023513 GGTTGATGCTGAGAAGCGCT 61.024 55.000 2.64 2.64 37.69 5.92
2365 2720 1.453155 TCCCAACCGTCTACGAGTAC 58.547 55.000 3.65 0.00 43.02 2.73
2383 2738 2.969628 ACCTCATAAACTCGGAGCAG 57.030 50.000 4.58 0.00 0.00 4.24
2389 2744 2.656560 TAAACTCGGAGCAGAGCTTC 57.343 50.000 4.58 0.00 39.88 3.86
2506 2861 1.804748 GAGTGGTTTGAGCTTAACCGG 59.195 52.381 20.39 0.00 46.44 5.28
2695 3050 1.510480 GCCCGCATCCAGCAAGATAC 61.510 60.000 0.00 0.00 46.13 2.24
2716 3071 2.746904 CGGTGCTGGAAACATCAATGTA 59.253 45.455 0.00 0.00 38.36 2.29
2836 3191 1.487558 GCTTTGGGGCCATTGATGAAT 59.512 47.619 4.39 0.00 0.00 2.57
2875 3230 0.606673 ACTTTTGAGCTCGGCTTCCC 60.607 55.000 9.64 0.00 39.88 3.97
2876 3231 0.606401 CTTTTGAGCTCGGCTTCCCA 60.606 55.000 9.64 0.00 39.88 4.37
2878 3233 0.392998 TTTGAGCTCGGCTTCCCATC 60.393 55.000 9.64 0.00 39.88 3.51
2917 3272 3.057876 GCTATCTCCATCGACGATCACTT 60.058 47.826 7.54 0.00 0.00 3.16
3127 3483 2.305927 TCCAGAGAGGACATTTTCACCC 59.694 50.000 0.00 0.00 43.07 4.61
3256 3612 9.961265 ATGTGAATATAACTTGCTCAATCATTG 57.039 29.630 0.00 0.00 0.00 2.82
3257 3613 8.959548 TGTGAATATAACTTGCTCAATCATTGT 58.040 29.630 0.00 0.00 0.00 2.71
3258 3614 9.793252 GTGAATATAACTTGCTCAATCATTGTT 57.207 29.630 0.00 0.00 0.00 2.83
3328 3691 3.133691 CGCACTTGATACATAGCCACAT 58.866 45.455 0.00 0.00 0.00 3.21
3333 3696 3.942130 TGATACATAGCCACATCCTCG 57.058 47.619 0.00 0.00 0.00 4.63
3382 3745 2.549754 GTGGTTGTGACTTGTGAGGATG 59.450 50.000 0.00 0.00 0.00 3.51
3383 3746 1.537202 GGTTGTGACTTGTGAGGATGC 59.463 52.381 0.00 0.00 0.00 3.91
3384 3747 2.498167 GTTGTGACTTGTGAGGATGCT 58.502 47.619 0.00 0.00 0.00 3.79
3385 3748 2.462456 TGTGACTTGTGAGGATGCTC 57.538 50.000 7.39 7.39 0.00 4.26
3386 3749 1.973515 TGTGACTTGTGAGGATGCTCT 59.026 47.619 15.82 0.00 0.00 4.09
3584 3952 3.569701 AGATTGTACTTGTTTGGCTGTGG 59.430 43.478 0.00 0.00 0.00 4.17
3656 4024 3.671702 GCAGCTGCACAAAACTAGGATTC 60.672 47.826 33.36 0.00 41.59 2.52
3724 4092 1.406069 CGCTCTTGTCATGCCCTTAGT 60.406 52.381 0.00 0.00 0.00 2.24
3761 4129 1.134580 CCACAGGCACAGGTCTATGAG 60.135 57.143 0.00 0.00 0.00 2.90
3772 4140 6.203723 GCACAGGTCTATGAGTATTTCATTCC 59.796 42.308 0.00 0.00 44.14 3.01
3839 4207 3.118408 TCTGACCTGCACAACAAGTTACT 60.118 43.478 0.00 0.00 0.00 2.24
3840 4208 4.100344 TCTGACCTGCACAACAAGTTACTA 59.900 41.667 0.00 0.00 0.00 1.82
3841 4209 4.124238 TGACCTGCACAACAAGTTACTAC 58.876 43.478 0.00 0.00 0.00 2.73
3842 4210 4.141801 TGACCTGCACAACAAGTTACTACT 60.142 41.667 0.00 0.00 35.68 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 2.966309 CTGCCTGCCGGTTCGTTTC 61.966 63.158 1.90 0.00 0.00 2.78
83 114 0.533978 CACGTGATGGTGGTGGTGAA 60.534 55.000 10.90 0.00 34.27 3.18
94 125 2.733552 CAGAACAAGAGGACACGTGATG 59.266 50.000 25.01 12.63 0.00 3.07
111 142 2.729491 CGCACGTCAGTCGCAGAA 60.729 61.111 0.00 0.00 44.19 3.02
200 238 3.267597 CTTTTGGCGGCCTGGAACG 62.268 63.158 21.46 1.83 0.00 3.95
201 239 2.650778 CTTTTGGCGGCCTGGAAC 59.349 61.111 21.46 0.00 0.00 3.62
202 240 3.302344 GCTTTTGGCGGCCTGGAA 61.302 61.111 21.46 9.59 0.00 3.53
297 335 0.178970 ACTAGGTGTGTCTGACGGGT 60.179 55.000 2.98 0.00 0.00 5.28
320 358 1.509923 GGGGTGACTCGTAACTCGG 59.490 63.158 0.00 0.00 40.32 4.63
410 449 9.810870 AAACGAGAGAGGTTATATATTAGGAGT 57.189 33.333 0.00 0.00 0.00 3.85
416 455 9.132923 TGACTGAAACGAGAGAGGTTATATATT 57.867 33.333 0.00 0.00 0.00 1.28
418 457 8.693120 ATGACTGAAACGAGAGAGGTTATATA 57.307 34.615 0.00 0.00 0.00 0.86
419 458 7.589958 ATGACTGAAACGAGAGAGGTTATAT 57.410 36.000 0.00 0.00 0.00 0.86
420 459 7.406031 AATGACTGAAACGAGAGAGGTTATA 57.594 36.000 0.00 0.00 0.00 0.98
421 460 5.923733 ATGACTGAAACGAGAGAGGTTAT 57.076 39.130 0.00 0.00 0.00 1.89
422 461 5.723672 AATGACTGAAACGAGAGAGGTTA 57.276 39.130 0.00 0.00 0.00 2.85
423 462 4.608948 AATGACTGAAACGAGAGAGGTT 57.391 40.909 0.00 0.00 0.00 3.50
424 463 4.608948 AAATGACTGAAACGAGAGAGGT 57.391 40.909 0.00 0.00 0.00 3.85
425 464 7.602517 AAATAAATGACTGAAACGAGAGAGG 57.397 36.000 0.00 0.00 0.00 3.69
428 467 9.760660 CCTAAAAATAAATGACTGAAACGAGAG 57.239 33.333 0.00 0.00 0.00 3.20
429 468 9.496873 TCCTAAAAATAAATGACTGAAACGAGA 57.503 29.630 0.00 0.00 0.00 4.04
430 469 9.760660 CTCCTAAAAATAAATGACTGAAACGAG 57.239 33.333 0.00 0.00 0.00 4.18
431 470 9.496873 TCTCCTAAAAATAAATGACTGAAACGA 57.503 29.630 0.00 0.00 0.00 3.85
501 553 2.982130 GGCGAGAAGAAGAGGCCA 59.018 61.111 5.01 0.00 43.23 5.36
564 616 2.158460 GGGTATTTATGGGAGCTGGCTT 60.158 50.000 0.00 0.00 0.00 4.35
587 639 3.465403 CGGAGCTGGAGGTGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
588 640 2.681778 ACGGAGCTGGAGGTGGAG 60.682 66.667 0.00 0.00 0.00 3.86
589 641 2.680352 GACGGAGCTGGAGGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
590 642 3.775654 GGACGGAGCTGGAGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
591 643 3.775654 GGGACGGAGCTGGAGGTG 61.776 72.222 0.00 0.00 0.00 4.00
627 679 2.093537 ATTCCGATCCAGCTCCGCTC 62.094 60.000 0.00 0.00 36.40 5.03
628 680 2.093537 GATTCCGATCCAGCTCCGCT 62.094 60.000 0.00 0.00 40.77 5.52
629 681 1.666234 GATTCCGATCCAGCTCCGC 60.666 63.158 0.00 0.00 0.00 5.54
697 766 3.007182 CCGTGTTTCTTAGTGGGTAAGGA 59.993 47.826 0.00 0.00 39.03 3.36
718 787 2.165234 GAGGCTGGCAATCTTTCTTTCC 59.835 50.000 3.38 0.00 0.00 3.13
842 926 4.870190 CGGGAAATCCTAACCGGG 57.130 61.111 6.32 0.00 42.48 5.73
1398 1729 3.623703 GAAGGCGACCTTGGGGACC 62.624 68.421 14.63 0.00 44.82 4.46
1476 1807 2.270527 GAGAAGAGGCCCTGGTGC 59.729 66.667 0.00 0.00 0.00 5.01
1588 1919 4.282195 GGAAAGAAGAGAGTGTGAGGAGAA 59.718 45.833 0.00 0.00 0.00 2.87
1593 1924 5.207110 TGAAGGAAAGAAGAGAGTGTGAG 57.793 43.478 0.00 0.00 0.00 3.51
1594 1925 5.815233 ATGAAGGAAAGAAGAGAGTGTGA 57.185 39.130 0.00 0.00 0.00 3.58
1595 1926 9.658799 TTATTATGAAGGAAAGAAGAGAGTGTG 57.341 33.333 0.00 0.00 0.00 3.82
1620 1951 9.715121 TTACGAGTTATGAAGTTCAGGTAAATT 57.285 29.630 11.91 0.55 0.00 1.82
1621 1952 9.367444 CTTACGAGTTATGAAGTTCAGGTAAAT 57.633 33.333 11.91 5.40 0.00 1.40
1622 1953 8.362639 ACTTACGAGTTATGAAGTTCAGGTAAA 58.637 33.333 11.91 0.73 29.87 2.01
1623 1954 7.889469 ACTTACGAGTTATGAAGTTCAGGTAA 58.111 34.615 11.91 3.43 29.87 2.85
1624 1955 7.458409 ACTTACGAGTTATGAAGTTCAGGTA 57.542 36.000 11.91 0.00 29.87 3.08
1625 1956 6.342338 ACTTACGAGTTATGAAGTTCAGGT 57.658 37.500 11.91 0.00 29.87 4.00
1626 1957 5.512082 CGACTTACGAGTTATGAAGTTCAGG 59.488 44.000 11.91 0.00 45.77 3.86
1627 1958 6.084925 ACGACTTACGAGTTATGAAGTTCAG 58.915 40.000 11.91 0.00 45.77 3.02
1628 1959 6.005583 ACGACTTACGAGTTATGAAGTTCA 57.994 37.500 8.27 8.27 45.77 3.18
1629 1960 8.440021 TTTACGACTTACGAGTTATGAAGTTC 57.560 34.615 0.00 0.00 45.77 3.01
1630 1961 8.801715 TTTTACGACTTACGAGTTATGAAGTT 57.198 30.769 0.00 0.00 45.77 2.66
1635 1966 7.953173 TGCAATTTTTACGACTTACGAGTTATG 59.047 33.333 0.00 0.00 45.77 1.90
1636 1967 8.020861 TGCAATTTTTACGACTTACGAGTTAT 57.979 30.769 0.00 0.00 45.77 1.89
1637 1968 7.169645 ACTGCAATTTTTACGACTTACGAGTTA 59.830 33.333 0.00 0.00 45.77 2.24
1639 1970 5.464389 ACTGCAATTTTTACGACTTACGAGT 59.536 36.000 0.00 0.00 45.77 4.18
1640 1971 5.912528 ACTGCAATTTTTACGACTTACGAG 58.087 37.500 0.00 0.00 45.77 4.18
1641 1972 5.462729 TGACTGCAATTTTTACGACTTACGA 59.537 36.000 0.00 0.00 45.77 3.43
1643 1974 5.849604 GGTGACTGCAATTTTTACGACTTAC 59.150 40.000 0.00 0.00 0.00 2.34
1644 1975 5.333492 CGGTGACTGCAATTTTTACGACTTA 60.333 40.000 0.00 0.00 0.00 2.24
1645 1976 4.553938 CGGTGACTGCAATTTTTACGACTT 60.554 41.667 0.00 0.00 0.00 3.01
1646 1977 3.059188 CGGTGACTGCAATTTTTACGACT 60.059 43.478 0.00 0.00 0.00 4.18
1647 1978 3.059461 TCGGTGACTGCAATTTTTACGAC 60.059 43.478 0.00 0.00 0.00 4.34
1648 1979 3.132160 TCGGTGACTGCAATTTTTACGA 58.868 40.909 0.00 0.00 0.00 3.43
1649 1980 3.529634 TCGGTGACTGCAATTTTTACG 57.470 42.857 0.00 0.00 0.00 3.18
1650 1981 5.457140 TGATTCGGTGACTGCAATTTTTAC 58.543 37.500 0.00 0.00 0.00 2.01
1651 1982 5.697473 TGATTCGGTGACTGCAATTTTTA 57.303 34.783 0.00 0.00 0.00 1.52
1652 1983 4.582701 TGATTCGGTGACTGCAATTTTT 57.417 36.364 0.00 0.00 0.00 1.94
1653 1984 4.487948 CATGATTCGGTGACTGCAATTTT 58.512 39.130 0.00 0.00 0.00 1.82
1654 1985 3.119388 CCATGATTCGGTGACTGCAATTT 60.119 43.478 0.00 0.00 0.00 1.82
1655 1986 2.424601 CCATGATTCGGTGACTGCAATT 59.575 45.455 0.00 0.00 0.00 2.32
1656 1987 2.019249 CCATGATTCGGTGACTGCAAT 58.981 47.619 0.00 0.00 0.00 3.56
1657 1988 1.452110 CCATGATTCGGTGACTGCAA 58.548 50.000 0.00 0.00 0.00 4.08
1658 1989 1.026182 GCCATGATTCGGTGACTGCA 61.026 55.000 0.00 0.00 0.00 4.41
1659 1990 1.026182 TGCCATGATTCGGTGACTGC 61.026 55.000 0.00 0.00 0.00 4.40
1660 1991 0.729116 GTGCCATGATTCGGTGACTG 59.271 55.000 0.00 0.00 0.00 3.51
1661 1992 0.324614 TGTGCCATGATTCGGTGACT 59.675 50.000 0.00 0.00 0.00 3.41
1662 1993 1.164411 TTGTGCCATGATTCGGTGAC 58.836 50.000 0.00 0.00 0.00 3.67
1663 1994 2.127271 ATTGTGCCATGATTCGGTGA 57.873 45.000 0.00 0.00 0.00 4.02
1664 1995 2.945447 AATTGTGCCATGATTCGGTG 57.055 45.000 0.00 0.00 0.00 4.94
1665 1996 3.884895 TCTAATTGTGCCATGATTCGGT 58.115 40.909 0.00 0.00 0.00 4.69
1666 1997 5.217393 CAATCTAATTGTGCCATGATTCGG 58.783 41.667 0.00 0.00 35.57 4.30
1693 2024 4.829064 TTTCGCAAGCAGTTCAACTAAT 57.171 36.364 0.00 0.00 37.18 1.73
1704 2035 1.202510 AGCCACAATTTTTCGCAAGCA 60.203 42.857 0.00 0.00 37.18 3.91
1705 2036 1.192980 CAGCCACAATTTTTCGCAAGC 59.807 47.619 0.00 0.00 37.18 4.01
1706 2037 2.741612 TCAGCCACAATTTTTCGCAAG 58.258 42.857 0.00 0.00 0.00 4.01
1707 2038 2.879002 TCAGCCACAATTTTTCGCAA 57.121 40.000 0.00 0.00 0.00 4.85
1709 2040 3.316283 TCAATCAGCCACAATTTTTCGC 58.684 40.909 0.00 0.00 0.00 4.70
1710 2041 5.220080 CGAATCAATCAGCCACAATTTTTCG 60.220 40.000 0.00 0.00 0.00 3.46
1716 2062 4.201950 GCTAACGAATCAATCAGCCACAAT 60.202 41.667 0.00 0.00 0.00 2.71
1777 2130 0.960364 ATGGCAACCACCAACTAGCG 60.960 55.000 0.00 0.00 44.65 4.26
1987 2340 8.924511 ACATCCATGACTAATTATTTAGTGGG 57.075 34.615 13.38 11.65 46.32 4.61
2006 2359 3.189606 AGTCCCAACCATAAGACATCCA 58.810 45.455 0.00 0.00 0.00 3.41
2026 2379 8.856490 AAAGCAGAGTACACAAATAAACAAAG 57.144 30.769 0.00 0.00 0.00 2.77
2068 2421 5.580022 AGGTTGACACTTTAGCCCAATTAT 58.420 37.500 0.00 0.00 0.00 1.28
2069 2422 4.993028 AGGTTGACACTTTAGCCCAATTA 58.007 39.130 0.00 0.00 0.00 1.40
2070 2423 3.826729 GAGGTTGACACTTTAGCCCAATT 59.173 43.478 0.00 0.00 0.00 2.32
2073 2426 1.771854 TGAGGTTGACACTTTAGCCCA 59.228 47.619 0.00 0.00 0.00 5.36
2160 2515 1.335132 TAGCCGTTGATCAGGGTCCC 61.335 60.000 8.83 0.00 39.24 4.46
2267 2622 4.263209 CAACGCGTTGGCCAGCAA 62.263 61.111 37.79 0.00 36.95 3.91
2278 2633 0.787787 TCGAGAAATCCAACAACGCG 59.212 50.000 3.53 3.53 0.00 6.01
2365 2720 2.801342 GCTCTGCTCCGAGTTTATGAGG 60.801 54.545 0.00 0.00 33.55 3.86
2383 2738 1.085091 TGTAGGACTCGACGAAGCTC 58.915 55.000 0.00 0.00 0.00 4.09
2389 2744 1.395954 TCGATGTTGTAGGACTCGACG 59.604 52.381 0.00 0.00 33.80 5.12
2695 3050 1.541147 ACATTGATGTTTCCAGCACCG 59.459 47.619 0.00 0.00 36.56 4.94
2716 3071 3.203710 TCCTGATGGCCTTGATGAAATCT 59.796 43.478 3.32 0.00 45.81 2.40
2836 3191 0.031585 CCAACACCGTCGAAGTGAGA 59.968 55.000 20.40 0.00 38.63 3.27
2875 3230 8.026026 AGATAGCTCGATAATATAATGCCGATG 58.974 37.037 0.00 0.00 0.00 3.84
2876 3231 8.116651 AGATAGCTCGATAATATAATGCCGAT 57.883 34.615 0.00 0.00 0.00 4.18
2878 3233 6.804295 GGAGATAGCTCGATAATATAATGCCG 59.196 42.308 1.16 0.00 42.25 5.69
3256 3612 0.881600 CAAGCCAAGCCAAGCCAAAC 60.882 55.000 0.00 0.00 0.00 2.93
3257 3613 1.446791 CAAGCCAAGCCAAGCCAAA 59.553 52.632 0.00 0.00 0.00 3.28
3258 3614 2.509651 CCAAGCCAAGCCAAGCCAA 61.510 57.895 0.00 0.00 0.00 4.52
3259 3615 2.918802 CCAAGCCAAGCCAAGCCA 60.919 61.111 0.00 0.00 0.00 4.75
3260 3616 4.383861 GCCAAGCCAAGCCAAGCC 62.384 66.667 0.00 0.00 0.00 4.35
3302 3658 2.609459 GCTATGTATCAAGTGCGCAACT 59.391 45.455 14.00 9.42 42.60 3.16
3304 3660 1.939934 GGCTATGTATCAAGTGCGCAA 59.060 47.619 14.00 0.00 0.00 4.85
3328 3691 2.218603 GTTGCTTCAAGGTTTCGAGGA 58.781 47.619 0.00 0.00 0.00 3.71
3382 3745 0.179078 CTCATGGACCAGAGCAGAGC 60.179 60.000 0.00 0.00 0.00 4.09
3383 3746 1.482954 TCTCATGGACCAGAGCAGAG 58.517 55.000 13.28 9.16 0.00 3.35
3384 3747 1.761198 CATCTCATGGACCAGAGCAGA 59.239 52.381 13.28 6.53 0.00 4.26
3385 3748 1.761198 TCATCTCATGGACCAGAGCAG 59.239 52.381 13.28 9.48 0.00 4.24
3386 3749 1.870064 TCATCTCATGGACCAGAGCA 58.130 50.000 13.28 6.09 0.00 4.26
3584 3952 3.684788 CCCGCAATACTATTATGCAGTCC 59.315 47.826 0.00 0.00 0.00 3.85
3656 4024 1.375396 TCTCCCATGTTCGCCAACG 60.375 57.895 0.00 0.00 42.01 4.10
3724 4092 5.822519 GCCTGTGGATTATTGTAATCACTGA 59.177 40.000 10.77 0.00 0.00 3.41
3772 4140 7.602517 AATCCACAGACTTTCTTCTATTTCG 57.397 36.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.