Multiple sequence alignment - TraesCS7B01G221300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G221300 chr7B 100.000 3422 0 0 1 3422 413094410 413097831 0.000000e+00 6320
1 TraesCS7B01G221300 chr7D 96.039 2676 78 18 762 3422 403764796 403767458 0.000000e+00 4329
2 TraesCS7B01G221300 chr7D 92.653 490 29 6 1 486 403764215 403764701 0.000000e+00 699
3 TraesCS7B01G221300 chr7D 93.522 247 15 1 518 764 31061838 31062083 1.940000e-97 366
4 TraesCS7B01G221300 chr7A 95.249 2673 76 17 762 3420 462328573 462331208 0.000000e+00 4185
5 TraesCS7B01G221300 chr7A 90.356 477 33 8 20 486 462328020 462328493 6.280000e-172 614
6 TraesCS7B01G221300 chr7A 93.776 241 15 0 525 765 113622869 113623109 2.510000e-96 363
7 TraesCS7B01G221300 chr7A 93.416 243 16 0 521 763 631367661 631367419 9.030000e-96 361
8 TraesCS7B01G221300 chr2A 94.262 244 13 1 521 763 362445893 362446136 4.170000e-99 372
9 TraesCS7B01G221300 chr6B 93.878 245 14 1 525 769 523343875 523343632 5.400000e-98 368
10 TraesCS7B01G221300 chr6B 93.033 244 17 0 520 763 98854290 98854533 1.170000e-94 357
11 TraesCS7B01G221300 chr2D 93.416 243 16 0 521 763 295166401 295166643 9.030000e-96 361
12 TraesCS7B01G221300 chr2B 93.361 241 16 0 525 765 101976952 101976712 1.170000e-94 357
13 TraesCS7B01G221300 chr3D 92.339 248 19 0 517 764 346851444 346851197 1.510000e-93 353
14 TraesCS7B01G221300 chr6D 86.283 226 14 15 3140 3357 453770239 453770455 2.660000e-56 230
15 TraesCS7B01G221300 chr4B 77.778 333 30 23 1035 1364 562287 561996 7.600000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G221300 chr7B 413094410 413097831 3421 False 6320.0 6320 100.0000 1 3422 1 chr7B.!!$F1 3421
1 TraesCS7B01G221300 chr7D 403764215 403767458 3243 False 2514.0 4329 94.3460 1 3422 2 chr7D.!!$F2 3421
2 TraesCS7B01G221300 chr7A 462328020 462331208 3188 False 2399.5 4185 92.8025 20 3420 2 chr7A.!!$F2 3400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 605 0.035439 TTCAATGCTCCCTCCGTTCC 60.035 55.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2441 2516 0.163788 GCATGACGTGTTCTCCAACG 59.836 55.0 0.0 0.0 34.95 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.472683 TGGCAATTTTCCGACTATAATTTTTG 57.527 30.769 0.00 0.00 0.00 2.44
72 73 3.514645 CAAGCAGTACCATGGCAATTTC 58.485 45.455 13.04 0.00 0.00 2.17
135 136 6.131961 AGCTTGCCATAGTTATTCTTTGGAT 58.868 36.000 8.14 0.00 44.43 3.41
159 160 4.577834 TGGCAAAACTGTAGGTTAAAGC 57.422 40.909 0.00 0.00 37.12 3.51
220 222 8.156994 ACTTTTTGGACCATTCAAAATTCATG 57.843 30.769 0.00 0.00 41.72 3.07
275 279 8.370940 TGAACATGGCAAATTTACTTTTATCCA 58.629 29.630 0.00 0.00 0.00 3.41
277 281 9.737844 AACATGGCAAATTTACTTTTATCCAAT 57.262 25.926 0.00 0.00 29.76 3.16
278 282 9.165035 ACATGGCAAATTTACTTTTATCCAATG 57.835 29.630 0.00 0.00 29.76 2.82
279 283 9.381033 CATGGCAAATTTACTTTTATCCAATGA 57.619 29.630 0.00 0.00 29.76 2.57
341 347 6.543430 TGGAACATGGCAAGCTTTATTAAT 57.457 33.333 0.00 0.00 0.00 1.40
345 351 9.377312 GGAACATGGCAAGCTTTATTAATTTAA 57.623 29.630 0.00 0.00 0.00 1.52
354 360 9.868277 CAAGCTTTATTAATTTAACCATGTGGA 57.132 29.630 5.96 0.00 38.94 4.02
422 428 7.619050 ACATGGGCATATTTTATGTTGAAACA 58.381 30.769 0.00 0.00 44.06 2.83
426 432 7.816995 TGGGCATATTTTATGTTGAAACAGTTC 59.183 33.333 1.94 0.00 43.04 3.01
442 452 2.035066 CAGTTCTTTGCCAAGGTTCCTG 59.965 50.000 0.00 0.00 0.00 3.86
459 469 6.599638 AGGTTCCTGCTATGTGTTCTTAAATC 59.400 38.462 0.00 0.00 0.00 2.17
460 470 6.183360 GGTTCCTGCTATGTGTTCTTAAATCC 60.183 42.308 0.00 0.00 0.00 3.01
522 591 9.603921 ATTTTTCAACTTGATCACAGTTTCAAT 57.396 25.926 15.99 10.90 31.83 2.57
523 592 7.990541 TTTCAACTTGATCACAGTTTCAATG 57.009 32.000 15.99 9.08 31.83 2.82
524 593 5.522456 TCAACTTGATCACAGTTTCAATGC 58.478 37.500 15.99 0.00 31.83 3.56
525 594 5.300034 TCAACTTGATCACAGTTTCAATGCT 59.700 36.000 15.99 0.00 31.83 3.79
526 595 5.368256 ACTTGATCACAGTTTCAATGCTC 57.632 39.130 0.00 0.00 31.83 4.26
527 596 4.217118 ACTTGATCACAGTTTCAATGCTCC 59.783 41.667 0.00 0.00 31.83 4.70
528 597 3.084039 TGATCACAGTTTCAATGCTCCC 58.916 45.455 0.00 0.00 0.00 4.30
529 598 2.957402 TCACAGTTTCAATGCTCCCT 57.043 45.000 0.00 0.00 0.00 4.20
530 599 2.783135 TCACAGTTTCAATGCTCCCTC 58.217 47.619 0.00 0.00 0.00 4.30
531 600 1.815003 CACAGTTTCAATGCTCCCTCC 59.185 52.381 0.00 0.00 0.00 4.30
532 601 1.089920 CAGTTTCAATGCTCCCTCCG 58.910 55.000 0.00 0.00 0.00 4.63
533 602 0.693049 AGTTTCAATGCTCCCTCCGT 59.307 50.000 0.00 0.00 0.00 4.69
534 603 1.073923 AGTTTCAATGCTCCCTCCGTT 59.926 47.619 0.00 0.00 0.00 4.44
535 604 1.468914 GTTTCAATGCTCCCTCCGTTC 59.531 52.381 0.00 0.00 0.00 3.95
536 605 0.035439 TTCAATGCTCCCTCCGTTCC 60.035 55.000 0.00 0.00 0.00 3.62
537 606 1.198094 TCAATGCTCCCTCCGTTCCA 61.198 55.000 0.00 0.00 0.00 3.53
538 607 0.322456 CAATGCTCCCTCCGTTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
539 608 0.404040 AATGCTCCCTCCGTTCCAAA 59.596 50.000 0.00 0.00 0.00 3.28
540 609 0.404040 ATGCTCCCTCCGTTCCAAAA 59.596 50.000 0.00 0.00 0.00 2.44
541 610 0.404040 TGCTCCCTCCGTTCCAAAAT 59.596 50.000 0.00 0.00 0.00 1.82
542 611 1.631388 TGCTCCCTCCGTTCCAAAATA 59.369 47.619 0.00 0.00 0.00 1.40
543 612 2.241176 TGCTCCCTCCGTTCCAAAATAT 59.759 45.455 0.00 0.00 0.00 1.28
544 613 3.456644 TGCTCCCTCCGTTCCAAAATATA 59.543 43.478 0.00 0.00 0.00 0.86
545 614 4.080243 TGCTCCCTCCGTTCCAAAATATAA 60.080 41.667 0.00 0.00 0.00 0.98
546 615 5.070685 GCTCCCTCCGTTCCAAAATATAAT 58.929 41.667 0.00 0.00 0.00 1.28
547 616 5.048713 GCTCCCTCCGTTCCAAAATATAATG 60.049 44.000 0.00 0.00 0.00 1.90
548 617 4.825085 TCCCTCCGTTCCAAAATATAATGC 59.175 41.667 0.00 0.00 0.00 3.56
549 618 4.827284 CCCTCCGTTCCAAAATATAATGCT 59.173 41.667 0.00 0.00 0.00 3.79
550 619 5.301805 CCCTCCGTTCCAAAATATAATGCTT 59.698 40.000 0.00 0.00 0.00 3.91
551 620 6.183360 CCCTCCGTTCCAAAATATAATGCTTT 60.183 38.462 0.00 0.00 0.00 3.51
552 621 6.918022 CCTCCGTTCCAAAATATAATGCTTTC 59.082 38.462 0.00 0.00 0.00 2.62
553 622 7.201821 CCTCCGTTCCAAAATATAATGCTTTCT 60.202 37.037 0.00 0.00 0.00 2.52
554 623 7.703328 TCCGTTCCAAAATATAATGCTTTCTC 58.297 34.615 0.00 0.00 0.00 2.87
555 624 7.556275 TCCGTTCCAAAATATAATGCTTTCTCT 59.444 33.333 0.00 0.00 0.00 3.10
556 625 8.836413 CCGTTCCAAAATATAATGCTTTCTCTA 58.164 33.333 0.00 0.00 0.00 2.43
562 631 9.831737 CAAAATATAATGCTTTCTCTATTCCCG 57.168 33.333 0.00 0.00 0.00 5.14
563 632 9.574516 AAAATATAATGCTTTCTCTATTCCCGT 57.425 29.630 0.00 0.00 0.00 5.28
565 634 9.654663 AATATAATGCTTTCTCTATTCCCGTAC 57.345 33.333 0.00 0.00 0.00 3.67
566 635 5.615925 AATGCTTTCTCTATTCCCGTACT 57.384 39.130 0.00 0.00 0.00 2.73
567 636 5.615925 ATGCTTTCTCTATTCCCGTACTT 57.384 39.130 0.00 0.00 0.00 2.24
568 637 5.007385 TGCTTTCTCTATTCCCGTACTTC 57.993 43.478 0.00 0.00 0.00 3.01
569 638 4.464951 TGCTTTCTCTATTCCCGTACTTCA 59.535 41.667 0.00 0.00 0.00 3.02
570 639 5.046878 TGCTTTCTCTATTCCCGTACTTCAA 60.047 40.000 0.00 0.00 0.00 2.69
571 640 5.291371 GCTTTCTCTATTCCCGTACTTCAAC 59.709 44.000 0.00 0.00 0.00 3.18
572 641 6.600882 TTTCTCTATTCCCGTACTTCAACT 57.399 37.500 0.00 0.00 0.00 3.16
573 642 6.600882 TTCTCTATTCCCGTACTTCAACTT 57.399 37.500 0.00 0.00 0.00 2.66
574 643 6.600882 TCTCTATTCCCGTACTTCAACTTT 57.399 37.500 0.00 0.00 0.00 2.66
575 644 6.395629 TCTCTATTCCCGTACTTCAACTTTG 58.604 40.000 0.00 0.00 0.00 2.77
576 645 6.209986 TCTCTATTCCCGTACTTCAACTTTGA 59.790 38.462 0.00 0.00 34.92 2.69
577 646 6.161381 TCTATTCCCGTACTTCAACTTTGAC 58.839 40.000 0.00 0.00 36.83 3.18
578 647 3.116079 TCCCGTACTTCAACTTTGACC 57.884 47.619 0.00 0.00 36.83 4.02
579 648 2.435069 TCCCGTACTTCAACTTTGACCA 59.565 45.455 0.00 0.00 36.83 4.02
580 649 3.071892 TCCCGTACTTCAACTTTGACCAT 59.928 43.478 0.00 0.00 36.83 3.55
581 650 4.283978 TCCCGTACTTCAACTTTGACCATA 59.716 41.667 0.00 0.00 36.83 2.74
582 651 4.998672 CCCGTACTTCAACTTTGACCATAA 59.001 41.667 0.00 0.00 36.83 1.90
583 652 5.470777 CCCGTACTTCAACTTTGACCATAAA 59.529 40.000 0.00 0.00 36.83 1.40
584 653 6.150474 CCCGTACTTCAACTTTGACCATAAAT 59.850 38.462 0.00 0.00 36.83 1.40
585 654 7.308951 CCCGTACTTCAACTTTGACCATAAATT 60.309 37.037 0.00 0.00 36.83 1.82
586 655 8.079809 CCGTACTTCAACTTTGACCATAAATTT 58.920 33.333 0.00 0.00 36.83 1.82
590 659 9.758651 ACTTCAACTTTGACCATAAATTTAACC 57.241 29.630 1.21 0.00 36.83 2.85
591 660 9.757227 CTTCAACTTTGACCATAAATTTAACCA 57.243 29.630 1.21 0.00 36.83 3.67
593 662 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
594 663 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
595 664 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
596 665 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
597 666 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
598 667 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
599 668 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
600 669 5.122711 ACCATAAATTTAACCAACGAGACCG 59.877 40.000 1.21 0.00 42.50 4.79
601 670 5.352016 CCATAAATTTAACCAACGAGACCGA 59.648 40.000 1.21 0.00 39.50 4.69
602 671 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
603 672 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
604 673 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
605 674 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
606 675 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
630 699 4.920376 CGGGAGCAAAAATTATACCAGTG 58.080 43.478 0.00 0.00 0.00 3.66
631 700 4.638421 CGGGAGCAAAAATTATACCAGTGA 59.362 41.667 0.00 0.00 0.00 3.41
632 701 5.124776 CGGGAGCAAAAATTATACCAGTGAA 59.875 40.000 0.00 0.00 0.00 3.18
633 702 6.183360 CGGGAGCAAAAATTATACCAGTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
634 703 7.555965 GGGAGCAAAAATTATACCAGTGAATT 58.444 34.615 0.00 0.00 0.00 2.17
635 704 7.706607 GGGAGCAAAAATTATACCAGTGAATTC 59.293 37.037 0.00 0.00 0.00 2.17
636 705 7.432252 GGAGCAAAAATTATACCAGTGAATTCG 59.568 37.037 0.04 0.00 0.00 3.34
637 706 7.826690 AGCAAAAATTATACCAGTGAATTCGT 58.173 30.769 0.04 0.00 0.00 3.85
638 707 8.952278 AGCAAAAATTATACCAGTGAATTCGTA 58.048 29.630 0.04 0.00 0.00 3.43
639 708 9.730420 GCAAAAATTATACCAGTGAATTCGTAT 57.270 29.630 0.04 5.16 0.00 3.06
683 752 4.150994 TTTTTCTTCCGCCGCAGT 57.849 50.000 0.00 0.00 0.00 4.40
684 753 1.946267 TTTTTCTTCCGCCGCAGTC 59.054 52.632 0.00 0.00 0.00 3.51
685 754 0.534203 TTTTTCTTCCGCCGCAGTCT 60.534 50.000 0.00 0.00 0.00 3.24
686 755 1.227999 TTTTCTTCCGCCGCAGTCTG 61.228 55.000 0.00 0.00 0.00 3.51
687 756 2.377628 TTTCTTCCGCCGCAGTCTGT 62.378 55.000 0.93 0.00 0.00 3.41
688 757 2.765250 TTCTTCCGCCGCAGTCTGTC 62.765 60.000 0.93 0.00 0.00 3.51
689 758 3.288308 CTTCCGCCGCAGTCTGTCT 62.288 63.158 0.93 0.00 0.00 3.41
690 759 3.282745 TTCCGCCGCAGTCTGTCTC 62.283 63.158 0.93 0.00 0.00 3.36
692 761 4.406173 CGCCGCAGTCTGTCTCGT 62.406 66.667 0.93 0.00 0.00 4.18
693 762 2.049063 GCCGCAGTCTGTCTCGTT 60.049 61.111 0.93 0.00 0.00 3.85
694 763 2.375766 GCCGCAGTCTGTCTCGTTG 61.376 63.158 0.93 0.00 0.00 4.10
695 764 1.734477 CCGCAGTCTGTCTCGTTGG 60.734 63.158 0.93 0.00 0.00 3.77
696 765 1.007271 CGCAGTCTGTCTCGTTGGT 60.007 57.895 0.93 0.00 0.00 3.67
697 766 0.597637 CGCAGTCTGTCTCGTTGGTT 60.598 55.000 0.93 0.00 0.00 3.67
698 767 1.335597 CGCAGTCTGTCTCGTTGGTTA 60.336 52.381 0.93 0.00 0.00 2.85
699 768 2.750948 GCAGTCTGTCTCGTTGGTTAA 58.249 47.619 0.93 0.00 0.00 2.01
700 769 3.128349 GCAGTCTGTCTCGTTGGTTAAA 58.872 45.455 0.93 0.00 0.00 1.52
701 770 3.746492 GCAGTCTGTCTCGTTGGTTAAAT 59.254 43.478 0.93 0.00 0.00 1.40
702 771 4.213482 GCAGTCTGTCTCGTTGGTTAAATT 59.787 41.667 0.93 0.00 0.00 1.82
703 772 5.277828 GCAGTCTGTCTCGTTGGTTAAATTT 60.278 40.000 0.93 0.00 0.00 1.82
704 773 6.073440 GCAGTCTGTCTCGTTGGTTAAATTTA 60.073 38.462 0.93 0.00 0.00 1.40
705 774 7.360946 GCAGTCTGTCTCGTTGGTTAAATTTAT 60.361 37.037 0.93 0.00 0.00 1.40
706 775 7.957484 CAGTCTGTCTCGTTGGTTAAATTTATG 59.043 37.037 0.00 0.00 0.00 1.90
707 776 7.119262 AGTCTGTCTCGTTGGTTAAATTTATGG 59.881 37.037 0.00 0.00 0.00 2.74
708 777 6.938030 TCTGTCTCGTTGGTTAAATTTATGGT 59.062 34.615 0.00 0.00 0.00 3.55
709 778 7.118680 TCTGTCTCGTTGGTTAAATTTATGGTC 59.881 37.037 0.00 0.00 0.00 4.02
710 779 6.711194 TGTCTCGTTGGTTAAATTTATGGTCA 59.289 34.615 0.00 0.00 0.00 4.02
711 780 7.228906 TGTCTCGTTGGTTAAATTTATGGTCAA 59.771 33.333 0.00 0.00 0.00 3.18
712 781 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
713 782 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
714 783 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
715 784 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
716 785 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
717 786 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
718 787 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
719 788 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
728 797 4.729227 GTCAAAGTTGGACCTTGGAAAA 57.271 40.909 0.00 0.00 0.00 2.29
729 798 4.430007 GTCAAAGTTGGACCTTGGAAAAC 58.570 43.478 0.00 0.00 0.00 2.43
730 799 3.129638 TCAAAGTTGGACCTTGGAAAACG 59.870 43.478 0.00 0.00 0.00 3.60
731 800 1.029681 AGTTGGACCTTGGAAAACGC 58.970 50.000 0.00 0.00 0.00 4.84
732 801 0.317519 GTTGGACCTTGGAAAACGCG 60.318 55.000 3.53 3.53 0.00 6.01
733 802 1.448922 TTGGACCTTGGAAAACGCGG 61.449 55.000 12.47 0.00 0.00 6.46
734 803 1.895231 GGACCTTGGAAAACGCGGT 60.895 57.895 12.47 0.00 0.00 5.68
735 804 1.572941 GACCTTGGAAAACGCGGTC 59.427 57.895 12.47 4.41 37.57 4.79
736 805 2.166584 GACCTTGGAAAACGCGGTCG 62.167 60.000 12.47 0.00 42.43 4.79
737 806 2.127383 CTTGGAAAACGCGGTCGC 60.127 61.111 12.47 5.16 39.84 5.19
738 807 2.887889 CTTGGAAAACGCGGTCGCA 61.888 57.895 12.47 2.72 42.06 5.10
739 808 3.170810 TTGGAAAACGCGGTCGCAC 62.171 57.895 12.47 0.00 42.06 5.34
740 809 3.343421 GGAAAACGCGGTCGCACT 61.343 61.111 12.47 0.00 42.06 4.40
741 810 2.023223 GGAAAACGCGGTCGCACTA 61.023 57.895 12.47 0.00 42.06 2.74
742 811 1.356527 GGAAAACGCGGTCGCACTAT 61.357 55.000 12.47 0.00 42.06 2.12
743 812 1.270971 GAAAACGCGGTCGCACTATA 58.729 50.000 12.47 0.00 42.06 1.31
744 813 1.856597 GAAAACGCGGTCGCACTATAT 59.143 47.619 12.47 0.00 42.06 0.86
745 814 1.930567 AAACGCGGTCGCACTATATT 58.069 45.000 12.47 0.00 42.06 1.28
746 815 1.930567 AACGCGGTCGCACTATATTT 58.069 45.000 12.47 0.00 42.06 1.40
747 816 1.930567 ACGCGGTCGCACTATATTTT 58.069 45.000 12.47 0.00 42.06 1.82
748 817 1.591158 ACGCGGTCGCACTATATTTTG 59.409 47.619 12.47 0.00 42.06 2.44
749 818 1.855978 CGCGGTCGCACTATATTTTGA 59.144 47.619 15.68 0.00 42.06 2.69
750 819 2.283086 CGCGGTCGCACTATATTTTGAA 59.717 45.455 15.68 0.00 42.06 2.69
751 820 3.242155 CGCGGTCGCACTATATTTTGAAA 60.242 43.478 15.68 0.00 42.06 2.69
752 821 4.551990 CGCGGTCGCACTATATTTTGAAAT 60.552 41.667 15.68 0.00 42.06 2.17
753 822 4.670621 GCGGTCGCACTATATTTTGAAATG 59.329 41.667 10.67 0.00 41.49 2.32
754 823 5.204833 CGGTCGCACTATATTTTGAAATGG 58.795 41.667 0.00 0.00 0.00 3.16
755 824 5.007234 CGGTCGCACTATATTTTGAAATGGA 59.993 40.000 0.00 0.00 0.00 3.41
756 825 6.430451 GGTCGCACTATATTTTGAAATGGAG 58.570 40.000 0.00 0.06 0.00 3.86
757 826 6.430451 GTCGCACTATATTTTGAAATGGAGG 58.570 40.000 0.00 0.00 0.00 4.30
758 827 5.530915 TCGCACTATATTTTGAAATGGAGGG 59.469 40.000 0.00 0.00 0.00 4.30
759 828 5.530915 CGCACTATATTTTGAAATGGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
760 829 6.293626 CGCACTATATTTTGAAATGGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
903 974 3.091190 TGTGACGTGGGGGTGGTT 61.091 61.111 0.00 0.00 0.00 3.67
904 975 2.193786 GTGACGTGGGGGTGGTTT 59.806 61.111 0.00 0.00 0.00 3.27
1212 1287 0.043940 AAGACCAGGAGCAGGAGGAT 59.956 55.000 0.00 0.00 0.00 3.24
1492 1567 3.770040 CCGTCACCTCCATCGGCA 61.770 66.667 0.00 0.00 36.68 5.69
1914 1989 1.729586 TTGAGGACACTAGGGTTGCT 58.270 50.000 0.00 0.00 0.00 3.91
2109 2184 6.712095 TCATCTCAAGTATGCAACAAGACTTT 59.288 34.615 0.00 0.00 29.73 2.66
2138 2213 0.032403 CATGTTGGTGGCAGTGTTGG 59.968 55.000 0.00 0.00 0.00 3.77
2292 2367 3.242867 TCAGAGGCTCTGGAGAAAAGAA 58.757 45.455 36.81 16.94 44.39 2.52
2418 2493 1.216710 GAAGGTCGAGGTGCTCCAG 59.783 63.158 7.70 0.71 35.89 3.86
2440 2515 6.320672 CCAGTGATTGCTTCTCCAAGATAAAT 59.679 38.462 0.00 0.00 0.00 1.40
2441 2516 7.416022 CAGTGATTGCTTCTCCAAGATAAATC 58.584 38.462 0.00 0.00 31.95 2.17
2455 2530 4.817517 AGATAAATCGTTGGAGAACACGT 58.182 39.130 0.00 0.00 31.78 4.49
2474 2549 3.380004 ACGTCATGCTTTTTCCAAGTGAA 59.620 39.130 0.00 0.00 0.00 3.18
2585 2661 4.070716 GCATTCCAGCAATGTATAGCTCT 58.929 43.478 0.00 0.00 43.62 4.09
2605 2681 1.066858 TGTGCTGCTAAGAGTACCTGC 60.067 52.381 0.00 0.00 0.00 4.85
2794 2870 5.144159 TCATCTAGATAGGTGTTCTGGGT 57.856 43.478 4.54 0.00 35.90 4.51
2828 2905 6.795098 AAGTGACGCACAAAAGTATAATCA 57.205 33.333 11.58 0.00 36.74 2.57
3059 3138 5.815740 TCTTTTGTGGTCTGACTGAAACTAC 59.184 40.000 7.85 0.00 0.00 2.73
3065 3144 5.634020 GTGGTCTGACTGAAACTACACATAC 59.366 44.000 7.85 0.00 0.00 2.39
3083 3162 6.040054 ACACATACTGCCATATTGACGTACTA 59.960 38.462 0.00 0.00 0.00 1.82
3084 3163 6.362551 CACATACTGCCATATTGACGTACTAC 59.637 42.308 0.00 0.00 0.00 2.73
3085 3164 6.264744 ACATACTGCCATATTGACGTACTACT 59.735 38.462 0.00 0.00 0.00 2.57
3088 3167 6.403878 ACTGCCATATTGACGTACTACTTTT 58.596 36.000 0.00 0.00 0.00 2.27
3102 3181 6.803320 CGTACTACTTTTCATTCGGTTCTACA 59.197 38.462 0.00 0.00 0.00 2.74
3120 3199 3.126001 ACAGAACCTTCGCTGATCAAA 57.874 42.857 0.00 0.00 36.07 2.69
3178 3259 1.401761 AACCAGCATCAGCAACACAA 58.598 45.000 0.00 0.00 45.49 3.33
3224 3306 9.657419 ATCTTGCTTTTATTTTGTCCTTTATGG 57.343 29.630 0.00 0.00 37.10 2.74
3261 3343 9.069082 TGATAGAGTAGATAAGGTAAAGAGTGC 57.931 37.037 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.093553 TGGCAATTTTCTTGCTATGGCC 60.094 45.455 9.54 0.00 44.36 5.36
135 136 6.265649 TGCTTTAACCTACAGTTTTGCCATAA 59.734 34.615 0.00 0.00 40.05 1.90
220 222 2.696989 AAATTGCCATGCCCTTAAGC 57.303 45.000 0.00 0.00 0.00 3.09
341 347 7.731054 AGCATTTAGTTTTCCACATGGTTAAA 58.269 30.769 0.00 0.00 36.34 1.52
345 351 5.806654 AAGCATTTAGTTTTCCACATGGT 57.193 34.783 0.00 0.00 36.34 3.55
354 360 5.550290 CCATGGTCCAAAGCATTTAGTTTT 58.450 37.500 2.57 0.00 41.59 2.43
422 428 2.310538 CAGGAACCTTGGCAAAGAACT 58.689 47.619 1.11 0.00 35.19 3.01
426 432 1.909700 TAGCAGGAACCTTGGCAAAG 58.090 50.000 0.00 0.00 0.00 2.77
442 452 4.640201 TGCCAGGATTTAAGAACACATAGC 59.360 41.667 0.00 0.00 0.00 2.97
504 573 4.217118 GGAGCATTGAAACTGTGATCAAGT 59.783 41.667 0.00 0.61 38.80 3.16
522 591 0.404040 ATTTTGGAACGGAGGGAGCA 59.596 50.000 0.00 0.00 0.00 4.26
523 592 2.413310 TATTTTGGAACGGAGGGAGC 57.587 50.000 0.00 0.00 0.00 4.70
524 593 5.048713 GCATTATATTTTGGAACGGAGGGAG 60.049 44.000 0.00 0.00 0.00 4.30
525 594 4.825085 GCATTATATTTTGGAACGGAGGGA 59.175 41.667 0.00 0.00 0.00 4.20
526 595 4.827284 AGCATTATATTTTGGAACGGAGGG 59.173 41.667 0.00 0.00 0.00 4.30
527 596 6.391227 AAGCATTATATTTTGGAACGGAGG 57.609 37.500 0.00 0.00 0.00 4.30
528 597 7.707104 AGAAAGCATTATATTTTGGAACGGAG 58.293 34.615 0.00 0.00 0.00 4.63
529 598 7.556275 AGAGAAAGCATTATATTTTGGAACGGA 59.444 33.333 0.00 0.00 0.00 4.69
530 599 7.707104 AGAGAAAGCATTATATTTTGGAACGG 58.293 34.615 0.00 0.00 0.00 4.44
536 605 9.831737 CGGGAATAGAGAAAGCATTATATTTTG 57.168 33.333 0.00 0.00 0.00 2.44
537 606 9.574516 ACGGGAATAGAGAAAGCATTATATTTT 57.425 29.630 0.00 0.00 0.00 1.82
539 608 9.654663 GTACGGGAATAGAGAAAGCATTATATT 57.345 33.333 0.00 0.00 0.00 1.28
540 609 9.036980 AGTACGGGAATAGAGAAAGCATTATAT 57.963 33.333 0.00 0.00 0.00 0.86
541 610 8.418597 AGTACGGGAATAGAGAAAGCATTATA 57.581 34.615 0.00 0.00 0.00 0.98
542 611 7.304497 AGTACGGGAATAGAGAAAGCATTAT 57.696 36.000 0.00 0.00 0.00 1.28
543 612 6.726490 AGTACGGGAATAGAGAAAGCATTA 57.274 37.500 0.00 0.00 0.00 1.90
544 613 5.615925 AGTACGGGAATAGAGAAAGCATT 57.384 39.130 0.00 0.00 0.00 3.56
545 614 5.128827 TGAAGTACGGGAATAGAGAAAGCAT 59.871 40.000 0.00 0.00 0.00 3.79
546 615 4.464951 TGAAGTACGGGAATAGAGAAAGCA 59.535 41.667 0.00 0.00 0.00 3.91
547 616 5.007385 TGAAGTACGGGAATAGAGAAAGC 57.993 43.478 0.00 0.00 0.00 3.51
548 617 6.631962 AGTTGAAGTACGGGAATAGAGAAAG 58.368 40.000 0.00 0.00 0.00 2.62
549 618 6.600882 AGTTGAAGTACGGGAATAGAGAAA 57.399 37.500 0.00 0.00 0.00 2.52
550 619 6.600882 AAGTTGAAGTACGGGAATAGAGAA 57.399 37.500 0.00 0.00 0.00 2.87
551 620 6.209986 TCAAAGTTGAAGTACGGGAATAGAGA 59.790 38.462 0.00 0.00 33.55 3.10
552 621 6.310711 GTCAAAGTTGAAGTACGGGAATAGAG 59.689 42.308 0.00 0.00 39.21 2.43
553 622 6.161381 GTCAAAGTTGAAGTACGGGAATAGA 58.839 40.000 0.00 0.00 39.21 1.98
554 623 5.350640 GGTCAAAGTTGAAGTACGGGAATAG 59.649 44.000 0.00 0.00 39.21 1.73
555 624 5.221682 TGGTCAAAGTTGAAGTACGGGAATA 60.222 40.000 0.00 0.00 39.21 1.75
556 625 4.070009 GGTCAAAGTTGAAGTACGGGAAT 58.930 43.478 0.00 0.00 39.21 3.01
557 626 3.118334 TGGTCAAAGTTGAAGTACGGGAA 60.118 43.478 0.00 0.00 39.21 3.97
558 627 2.435069 TGGTCAAAGTTGAAGTACGGGA 59.565 45.455 0.00 0.00 39.21 5.14
559 628 2.841215 TGGTCAAAGTTGAAGTACGGG 58.159 47.619 0.00 0.00 39.21 5.28
560 629 6.548441 TTTATGGTCAAAGTTGAAGTACGG 57.452 37.500 0.00 0.00 39.21 4.02
564 633 9.758651 GGTTAAATTTATGGTCAAAGTTGAAGT 57.241 29.630 0.00 0.00 39.21 3.01
565 634 9.757227 TGGTTAAATTTATGGTCAAAGTTGAAG 57.243 29.630 0.00 0.00 39.21 3.02
567 636 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
568 637 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
569 638 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
570 639 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
571 640 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
572 641 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
573 642 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
574 643 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
575 644 6.549061 GGTCTCGTTGGTTAAATTTATGGTC 58.451 40.000 0.00 0.00 0.00 4.02
576 645 5.122711 CGGTCTCGTTGGTTAAATTTATGGT 59.877 40.000 0.00 0.00 0.00 3.55
577 646 5.352016 TCGGTCTCGTTGGTTAAATTTATGG 59.648 40.000 0.00 0.00 37.69 2.74
578 647 6.091713 AGTCGGTCTCGTTGGTTAAATTTATG 59.908 38.462 0.00 0.00 37.69 1.90
579 648 6.091713 CAGTCGGTCTCGTTGGTTAAATTTAT 59.908 38.462 0.00 0.00 37.69 1.40
580 649 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
581 650 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
582 651 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
583 652 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
584 653 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
585 654 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
586 655 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
587 656 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
588 657 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
589 658 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
601 670 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
602 671 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
603 672 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
604 673 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
605 674 2.287368 GGTATAATTTTTGCTCCCGCCG 60.287 50.000 0.00 0.00 34.43 6.46
606 675 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
607 676 3.380320 ACTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
608 677 4.638421 TCACTGGTATAATTTTTGCTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
609 678 6.524101 TTCACTGGTATAATTTTTGCTCCC 57.476 37.500 0.00 0.00 0.00 4.30
610 679 7.432252 CGAATTCACTGGTATAATTTTTGCTCC 59.568 37.037 6.22 0.00 0.00 4.70
611 680 7.968405 ACGAATTCACTGGTATAATTTTTGCTC 59.032 33.333 6.22 0.00 0.00 4.26
612 681 7.826690 ACGAATTCACTGGTATAATTTTTGCT 58.173 30.769 6.22 0.00 0.00 3.91
613 682 9.730420 ATACGAATTCACTGGTATAATTTTTGC 57.270 29.630 6.22 0.00 0.00 3.68
666 735 0.534203 AGACTGCGGCGGAAGAAAAA 60.534 50.000 17.15 0.00 0.00 1.94
667 736 1.070786 AGACTGCGGCGGAAGAAAA 59.929 52.632 17.15 0.00 0.00 2.29
668 737 1.667830 CAGACTGCGGCGGAAGAAA 60.668 57.895 17.15 0.00 0.00 2.52
669 738 2.048222 CAGACTGCGGCGGAAGAA 60.048 61.111 17.15 0.00 0.00 2.52
670 739 3.282745 GACAGACTGCGGCGGAAGA 62.283 63.158 17.15 0.00 0.00 2.87
671 740 2.811317 GACAGACTGCGGCGGAAG 60.811 66.667 17.15 7.06 0.00 3.46
672 741 3.282745 GAGACAGACTGCGGCGGAA 62.283 63.158 17.15 0.00 0.00 4.30
673 742 3.749064 GAGACAGACTGCGGCGGA 61.749 66.667 17.15 4.40 0.00 5.54
675 744 3.898627 AACGAGACAGACTGCGGCG 62.899 63.158 0.51 0.51 0.00 6.46
676 745 2.049063 AACGAGACAGACTGCGGC 60.049 61.111 1.25 0.00 0.00 6.53
677 746 1.734477 CCAACGAGACAGACTGCGG 60.734 63.158 1.25 0.00 0.00 5.69
678 747 0.597637 AACCAACGAGACAGACTGCG 60.598 55.000 1.25 0.61 0.00 5.18
679 748 2.433868 TAACCAACGAGACAGACTGC 57.566 50.000 1.25 0.00 0.00 4.40
680 749 5.924475 AATTTAACCAACGAGACAGACTG 57.076 39.130 0.00 0.00 0.00 3.51
681 750 7.119262 CCATAAATTTAACCAACGAGACAGACT 59.881 37.037 1.21 0.00 0.00 3.24
682 751 7.094933 ACCATAAATTTAACCAACGAGACAGAC 60.095 37.037 1.21 0.00 0.00 3.51
683 752 6.938030 ACCATAAATTTAACCAACGAGACAGA 59.062 34.615 1.21 0.00 0.00 3.41
684 753 7.094975 TGACCATAAATTTAACCAACGAGACAG 60.095 37.037 1.21 0.00 0.00 3.51
685 754 6.711194 TGACCATAAATTTAACCAACGAGACA 59.289 34.615 1.21 0.00 0.00 3.41
686 755 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
687 756 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
688 757 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
689 758 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
690 759 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
691 760 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
692 761 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
693 762 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
694 763 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
695 764 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
696 765 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
697 766 8.364142 CAAGGTCCAACTTTGACCATAAATTTA 58.636 33.333 13.24 0.00 37.36 1.40
698 767 6.994421 AGGTCCAACTTTGACCATAAATTT 57.006 33.333 13.24 0.00 41.22 1.82
699 768 6.239572 CCAAGGTCCAACTTTGACCATAAATT 60.240 38.462 13.24 0.00 37.36 1.82
700 769 5.245977 CCAAGGTCCAACTTTGACCATAAAT 59.754 40.000 13.24 0.00 37.36 1.40
701 770 4.586841 CCAAGGTCCAACTTTGACCATAAA 59.413 41.667 13.24 0.00 37.36 1.40
702 771 4.141135 TCCAAGGTCCAACTTTGACCATAA 60.141 41.667 13.24 0.00 37.36 1.90
703 772 3.396276 TCCAAGGTCCAACTTTGACCATA 59.604 43.478 13.24 0.00 37.36 2.74
704 773 2.176798 TCCAAGGTCCAACTTTGACCAT 59.823 45.455 13.24 0.09 37.36 3.55
705 774 1.566703 TCCAAGGTCCAACTTTGACCA 59.433 47.619 13.24 0.00 37.36 4.02
706 775 2.358322 TCCAAGGTCCAACTTTGACC 57.642 50.000 4.16 4.16 37.36 4.02
707 776 4.430007 GTTTTCCAAGGTCCAACTTTGAC 58.570 43.478 3.77 0.00 37.36 3.18
708 777 3.129638 CGTTTTCCAAGGTCCAACTTTGA 59.870 43.478 3.77 0.00 37.36 2.69
709 778 3.443976 CGTTTTCCAAGGTCCAACTTTG 58.556 45.455 0.00 0.00 35.28 2.77
710 779 2.159156 GCGTTTTCCAAGGTCCAACTTT 60.159 45.455 0.00 0.00 0.00 2.66
711 780 1.407618 GCGTTTTCCAAGGTCCAACTT 59.592 47.619 0.00 0.00 0.00 2.66
712 781 1.029681 GCGTTTTCCAAGGTCCAACT 58.970 50.000 0.00 0.00 0.00 3.16
713 782 0.317519 CGCGTTTTCCAAGGTCCAAC 60.318 55.000 0.00 0.00 0.00 3.77
714 783 1.448922 CCGCGTTTTCCAAGGTCCAA 61.449 55.000 4.92 0.00 0.00 3.53
715 784 1.894756 CCGCGTTTTCCAAGGTCCA 60.895 57.895 4.92 0.00 0.00 4.02
716 785 1.848932 GACCGCGTTTTCCAAGGTCC 61.849 60.000 4.92 0.00 43.99 4.46
717 786 1.572941 GACCGCGTTTTCCAAGGTC 59.427 57.895 4.92 0.00 43.55 3.85
718 787 2.248835 CGACCGCGTTTTCCAAGGT 61.249 57.895 4.92 0.00 38.00 3.50
719 788 2.554272 CGACCGCGTTTTCCAAGG 59.446 61.111 4.92 0.00 0.00 3.61
720 789 2.127383 GCGACCGCGTTTTCCAAG 60.127 61.111 4.92 0.00 40.36 3.61
721 790 2.895865 TGCGACCGCGTTTTCCAA 60.896 55.556 4.92 0.00 45.51 3.53
722 791 2.696409 TAGTGCGACCGCGTTTTCCA 62.696 55.000 4.92 0.00 45.51 3.53
723 792 1.356527 ATAGTGCGACCGCGTTTTCC 61.357 55.000 4.92 0.00 45.51 3.13
724 793 1.270971 TATAGTGCGACCGCGTTTTC 58.729 50.000 4.92 0.00 45.51 2.29
725 794 1.930567 ATATAGTGCGACCGCGTTTT 58.069 45.000 4.92 0.00 45.51 2.43
726 795 1.930567 AATATAGTGCGACCGCGTTT 58.069 45.000 4.92 0.00 45.51 3.60
727 796 1.930567 AAATATAGTGCGACCGCGTT 58.069 45.000 4.92 0.00 45.51 4.84
728 797 1.591158 CAAAATATAGTGCGACCGCGT 59.409 47.619 4.92 2.33 45.51 6.01
729 798 1.855978 TCAAAATATAGTGCGACCGCG 59.144 47.619 9.91 0.00 45.51 6.46
730 799 3.936902 TTCAAAATATAGTGCGACCGC 57.063 42.857 7.53 7.53 42.35 5.68
731 800 5.007234 TCCATTTCAAAATATAGTGCGACCG 59.993 40.000 0.00 0.00 0.00 4.79
732 801 6.371809 TCCATTTCAAAATATAGTGCGACC 57.628 37.500 0.00 0.00 0.00 4.79
733 802 6.430451 CCTCCATTTCAAAATATAGTGCGAC 58.570 40.000 0.00 0.00 0.00 5.19
734 803 5.530915 CCCTCCATTTCAAAATATAGTGCGA 59.469 40.000 0.00 0.00 0.00 5.10
735 804 5.530915 TCCCTCCATTTCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
736 805 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
737 806 9.799106 ATACTCCCTCCATTTCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
745 814 9.573166 CATAATGTATACTCCCTCCATTTCAAA 57.427 33.333 4.17 0.00 0.00 2.69
746 815 8.944138 TCATAATGTATACTCCCTCCATTTCAA 58.056 33.333 4.17 0.00 0.00 2.69
747 816 8.375506 GTCATAATGTATACTCCCTCCATTTCA 58.624 37.037 4.17 0.00 0.00 2.69
748 817 8.375506 TGTCATAATGTATACTCCCTCCATTTC 58.624 37.037 4.17 0.00 0.00 2.17
749 818 8.275187 TGTCATAATGTATACTCCCTCCATTT 57.725 34.615 4.17 0.00 0.00 2.32
750 819 7.872061 TGTCATAATGTATACTCCCTCCATT 57.128 36.000 4.17 0.00 0.00 3.16
751 820 7.292356 TGTTGTCATAATGTATACTCCCTCCAT 59.708 37.037 4.17 0.00 0.00 3.41
752 821 6.613679 TGTTGTCATAATGTATACTCCCTCCA 59.386 38.462 4.17 0.00 0.00 3.86
753 822 7.062749 TGTTGTCATAATGTATACTCCCTCC 57.937 40.000 4.17 0.00 0.00 4.30
830 900 1.891150 AGCCCAATTTTCAGCTCAGTG 59.109 47.619 0.00 0.00 0.00 3.66
832 902 3.672767 AAAGCCCAATTTTCAGCTCAG 57.327 42.857 0.00 0.00 33.56 3.35
888 959 2.193517 CAAACCACCCCCACGTCA 59.806 61.111 0.00 0.00 0.00 4.35
889 960 2.596338 CCAAACCACCCCCACGTC 60.596 66.667 0.00 0.00 0.00 4.34
1212 1287 2.685017 AGGTCGCAGGATGAGGCA 60.685 61.111 0.00 0.00 44.50 4.75
1458 1533 2.125512 GAGTAGGCGCAGGTGTGG 60.126 66.667 10.83 0.00 0.00 4.17
1492 1567 1.502527 TTGGGGCCGGAGTGGTAATT 61.503 55.000 5.05 0.00 41.21 1.40
1914 1989 0.685097 CCTTCGAGAACTTGGTGGGA 59.315 55.000 0.00 0.00 0.00 4.37
2034 2109 1.458398 CCAAACGTATGGCATGGTGA 58.542 50.000 10.98 0.00 32.78 4.02
2109 2184 1.612991 CCACCAACATGGACGGAATCA 60.613 52.381 2.85 0.00 43.02 2.57
2138 2213 0.319125 GATTCGCTCGATGAGGTCCC 60.319 60.000 0.00 0.00 0.00 4.46
2149 2224 1.595382 CACCATCCCCGATTCGCTC 60.595 63.158 0.00 0.00 0.00 5.03
2159 2234 3.545703 CTTCCTACATCAACACCATCCC 58.454 50.000 0.00 0.00 0.00 3.85
2196 2271 1.264749 CCGTGTTGATCCCCTCTCCA 61.265 60.000 0.00 0.00 0.00 3.86
2418 2493 6.037610 ACGATTTATCTTGGAGAAGCAATCAC 59.962 38.462 0.00 0.00 0.00 3.06
2440 2515 1.778334 CATGACGTGTTCTCCAACGA 58.222 50.000 0.00 0.00 34.95 3.85
2441 2516 0.163788 GCATGACGTGTTCTCCAACG 59.836 55.000 0.00 0.00 34.95 4.10
2455 2530 4.278170 ACGATTCACTTGGAAAAAGCATGA 59.722 37.500 0.00 0.00 39.39 3.07
2474 2549 3.538591 TCAGACACGGTCTATACACGAT 58.461 45.455 6.28 0.00 41.37 3.73
2585 2661 1.066858 GCAGGTACTCTTAGCAGCACA 60.067 52.381 0.00 0.00 37.94 4.57
2605 2681 5.463724 GTGCTAAGGAACTAATTGATCGGAG 59.536 44.000 0.00 0.00 38.49 4.63
2779 2855 7.784470 AAGATAGATACCCAGAACACCTATC 57.216 40.000 0.00 0.00 34.25 2.08
2794 2870 8.766000 TTTTGTGCGTCACTTAAAGATAGATA 57.234 30.769 10.54 0.00 35.11 1.98
2968 3047 1.466167 CAGGTCAAGCAGCACATACAC 59.534 52.381 0.00 0.00 0.00 2.90
3059 3138 5.289595 AGTACGTCAATATGGCAGTATGTG 58.710 41.667 0.00 0.00 39.31 3.21
3065 3144 6.533723 TGAAAAGTAGTACGTCAATATGGCAG 59.466 38.462 0.00 0.00 0.00 4.85
3083 3162 6.541111 GTTCTGTAGAACCGAATGAAAAGT 57.459 37.500 12.61 0.00 46.42 2.66
3102 3181 2.079925 GCTTTGATCAGCGAAGGTTCT 58.920 47.619 7.55 0.00 38.27 3.01
3254 3336 5.240891 ACATATGCTATATTGCGCACTCTT 58.759 37.500 11.12 0.00 39.21 2.85
3258 3340 4.154015 TGGAACATATGCTATATTGCGCAC 59.846 41.667 11.12 0.00 39.21 5.34
3259 3341 4.322567 TGGAACATATGCTATATTGCGCA 58.677 39.130 5.66 5.66 40.87 6.09
3260 3342 4.631377 TCTGGAACATATGCTATATTGCGC 59.369 41.667 0.00 0.00 38.20 6.09
3261 3343 6.314648 ACATCTGGAACATATGCTATATTGCG 59.685 38.462 1.58 0.00 45.23 4.85
3381 3467 7.022055 TCGTCAAGCAAGAAGTTAAAAATGA 57.978 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.