Multiple sequence alignment - TraesCS7B01G221000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G221000 chr7B 100.000 3395 0 0 1 3395 412759727 412763121 0.000000e+00 6270.0
1 TraesCS7B01G221000 chr7D 95.207 1836 79 5 652 2481 403059465 403061297 0.000000e+00 2894.0
2 TraesCS7B01G221000 chr7D 84.091 484 37 10 175 635 403049686 403050152 6.730000e-117 431.0
3 TraesCS7B01G221000 chr7A 93.385 1542 73 8 524 2055 461793832 461795354 0.000000e+00 2255.0
4 TraesCS7B01G221000 chr7A 93.810 420 21 3 2054 2472 461797221 461797636 8.000000e-176 627.0
5 TraesCS7B01G221000 chr7A 89.231 390 35 6 175 562 461783038 461783422 6.590000e-132 481.0
6 TraesCS7B01G221000 chr7A 89.344 244 22 2 2469 2709 461797872 461798114 1.530000e-78 303.0
7 TraesCS7B01G221000 chr7A 92.135 178 14 0 1 178 461782811 461782988 5.620000e-63 252.0
8 TraesCS7B01G221000 chr6D 88.960 625 43 12 2759 3362 318949070 318949689 0.000000e+00 749.0
9 TraesCS7B01G221000 chr6A 87.950 556 45 12 2827 3361 456720676 456721230 1.330000e-178 636.0
10 TraesCS7B01G221000 chr6B 89.362 517 37 10 2853 3362 504589580 504589075 4.780000e-178 634.0
11 TraesCS7B01G221000 chr6B 95.349 43 2 0 2790 2832 504589613 504589571 6.080000e-08 69.4
12 TraesCS7B01G221000 chr3D 75.556 1305 245 54 1116 2382 7023244 7021976 2.940000e-160 575.0
13 TraesCS7B01G221000 chr3D 93.617 47 3 0 649 695 48418490 48418536 1.690000e-08 71.3
14 TraesCS7B01G221000 chr2D 74.814 1346 262 53 1094 2382 572404306 572405631 1.390000e-148 536.0
15 TraesCS7B01G221000 chr1B 73.175 1260 272 53 1147 2382 514077660 514076443 8.830000e-106 394.0
16 TraesCS7B01G221000 chr1D 72.902 1299 287 49 1109 2382 383364357 383363099 4.110000e-104 388.0
17 TraesCS7B01G221000 chr1D 74.398 1039 193 49 1391 2382 476249212 476248200 8.890000e-101 377.0
18 TraesCS7B01G221000 chr1A 72.741 1295 293 47 1109 2382 483134657 483133402 6.870000e-102 381.0
19 TraesCS7B01G221000 chr2A 72.851 1326 272 65 1096 2377 15602536 15603817 1.150000e-99 374.0
20 TraesCS7B01G221000 chr2B 72.866 1312 267 58 1090 2355 24217102 24218370 5.350000e-98 368.0
21 TraesCS7B01G221000 chr3A 74.027 1028 192 57 1116 2101 13363472 13364466 1.940000e-92 350.0
22 TraesCS7B01G221000 chr3A 72.773 1190 263 36 1214 2382 13335528 13334379 2.510000e-91 346.0
23 TraesCS7B01G221000 chrUn 82.946 129 20 1 2759 2887 379383988 379383862 7.700000e-22 115.0
24 TraesCS7B01G221000 chr3B 87.671 73 8 1 649 720 76468968 76469040 2.170000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G221000 chr7B 412759727 412763121 3394 False 6270.000000 6270 100.000000 1 3395 1 chr7B.!!$F1 3394
1 TraesCS7B01G221000 chr7D 403059465 403061297 1832 False 2894.000000 2894 95.207000 652 2481 1 chr7D.!!$F2 1829
2 TraesCS7B01G221000 chr7A 461793832 461798114 4282 False 1061.666667 2255 92.179667 524 2709 3 chr7A.!!$F2 2185
3 TraesCS7B01G221000 chr7A 461782811 461783422 611 False 366.500000 481 90.683000 1 562 2 chr7A.!!$F1 561
4 TraesCS7B01G221000 chr6D 318949070 318949689 619 False 749.000000 749 88.960000 2759 3362 1 chr6D.!!$F1 603
5 TraesCS7B01G221000 chr6A 456720676 456721230 554 False 636.000000 636 87.950000 2827 3361 1 chr6A.!!$F1 534
6 TraesCS7B01G221000 chr6B 504589075 504589613 538 True 351.700000 634 92.355500 2790 3362 2 chr6B.!!$R1 572
7 TraesCS7B01G221000 chr3D 7021976 7023244 1268 True 575.000000 575 75.556000 1116 2382 1 chr3D.!!$R1 1266
8 TraesCS7B01G221000 chr2D 572404306 572405631 1325 False 536.000000 536 74.814000 1094 2382 1 chr2D.!!$F1 1288
9 TraesCS7B01G221000 chr1B 514076443 514077660 1217 True 394.000000 394 73.175000 1147 2382 1 chr1B.!!$R1 1235
10 TraesCS7B01G221000 chr1D 383363099 383364357 1258 True 388.000000 388 72.902000 1109 2382 1 chr1D.!!$R1 1273
11 TraesCS7B01G221000 chr1D 476248200 476249212 1012 True 377.000000 377 74.398000 1391 2382 1 chr1D.!!$R2 991
12 TraesCS7B01G221000 chr1A 483133402 483134657 1255 True 381.000000 381 72.741000 1109 2382 1 chr1A.!!$R1 1273
13 TraesCS7B01G221000 chr2A 15602536 15603817 1281 False 374.000000 374 72.851000 1096 2377 1 chr2A.!!$F1 1281
14 TraesCS7B01G221000 chr2B 24217102 24218370 1268 False 368.000000 368 72.866000 1090 2355 1 chr2B.!!$F1 1265
15 TraesCS7B01G221000 chr3A 13363472 13364466 994 False 350.000000 350 74.027000 1116 2101 1 chr3A.!!$F1 985
16 TraesCS7B01G221000 chr3A 13334379 13335528 1149 True 346.000000 346 72.773000 1214 2382 1 chr3A.!!$R1 1168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.106708 GTTGGACACTCAGTGGCTCA 59.893 55.0 11.46 3.97 42.03 4.26 F
891 966 0.179000 AATCCTCTGCCCATCACGTC 59.821 55.0 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2057 3.606662 ACTGAGCGCCAGACGTGT 61.607 61.111 26.07 7.23 45.78 4.49 R
2718 5044 0.173481 GCACTGCACTGATCCGTCTA 59.827 55.000 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 6.718454 AGCTCAAAGAAAATCCATTCTCTTGA 59.282 34.615 0.00 0.00 38.69 3.02
101 102 6.688073 TGAGAGAATATAATGGAGGGGTTC 57.312 41.667 0.00 0.00 0.00 3.62
110 111 0.260230 TGGAGGGGTTCTGTGCAAAA 59.740 50.000 0.00 0.00 0.00 2.44
111 112 0.673985 GGAGGGGTTCTGTGCAAAAC 59.326 55.000 0.00 0.00 0.00 2.43
112 113 0.673985 GAGGGGTTCTGTGCAAAACC 59.326 55.000 15.29 15.29 43.48 3.27
136 137 8.098912 ACCGTGAAGTCCTTACTTAATTTGTAT 58.901 33.333 0.00 0.00 46.09 2.29
153 154 8.498054 AATTTGTATCTATGTTGGACACTCAG 57.502 34.615 0.00 0.00 0.00 3.35
160 161 0.106708 GTTGGACACTCAGTGGCTCA 59.893 55.000 11.46 3.97 42.03 4.26
172 173 2.036992 CAGTGGCTCAGGATGGTAGATC 59.963 54.545 0.00 0.00 36.16 2.75
183 237 4.718774 AGGATGGTAGATCTCACACACAAT 59.281 41.667 0.00 0.00 0.00 2.71
192 246 9.291664 GTAGATCTCACACACAATCTTAGTAAC 57.708 37.037 0.00 0.00 31.25 2.50
193 247 7.896811 AGATCTCACACACAATCTTAGTAACA 58.103 34.615 0.00 0.00 0.00 2.41
221 275 3.369052 GGGTAACGACAGTCATCATTGGA 60.369 47.826 0.41 0.00 37.60 3.53
222 276 3.617263 GGTAACGACAGTCATCATTGGAC 59.383 47.826 0.41 0.00 35.50 4.02
238 292 6.873997 TCATTGGACTGTTACTACTACATGG 58.126 40.000 0.00 0.00 0.00 3.66
247 301 5.593095 TGTTACTACTACATGGCCTACTCAG 59.407 44.000 3.32 0.00 0.00 3.35
271 325 1.819928 TTGTGATCCCAACCACATCG 58.180 50.000 0.00 0.00 42.13 3.84
287 341 5.538813 ACCACATCGCTCTTATATAAGGTGA 59.461 40.000 19.98 20.08 34.14 4.02
317 371 5.183140 TGTGAGAATCTAGACACGATCAACA 59.817 40.000 0.00 0.00 36.25 3.33
318 372 6.093404 GTGAGAATCTAGACACGATCAACAA 58.907 40.000 0.00 0.00 34.92 2.83
387 441 6.261826 ACATGAGGCTTGATAAAACATCTAGC 59.738 38.462 0.00 10.83 43.01 3.42
390 444 6.658816 TGAGGCTTGATAAAACATCTAGCAAA 59.341 34.615 17.93 4.83 44.62 3.68
392 446 7.895759 AGGCTTGATAAAACATCTAGCAAAAA 58.104 30.769 17.93 0.00 44.62 1.94
422 476 1.212935 ACCTCTTGCATACATGACCCC 59.787 52.381 0.00 0.00 0.00 4.95
435 489 5.255397 ACATGACCCCAATCTGAGTAAAA 57.745 39.130 0.00 0.00 0.00 1.52
436 490 5.831103 ACATGACCCCAATCTGAGTAAAAT 58.169 37.500 0.00 0.00 0.00 1.82
438 492 4.855340 TGACCCCAATCTGAGTAAAATCC 58.145 43.478 0.00 0.00 0.00 3.01
442 496 3.214328 CCAATCTGAGTAAAATCCCCCG 58.786 50.000 0.00 0.00 0.00 5.73
452 506 1.847328 AAATCCCCCGTGTGAAATCC 58.153 50.000 0.00 0.00 0.00 3.01
474 528 2.097825 GTACCTAGACCATCCACGTGT 58.902 52.381 15.65 0.00 0.00 4.49
478 532 2.494471 CCTAGACCATCCACGTGTGTTA 59.506 50.000 15.65 0.00 0.00 2.41
481 535 1.396996 GACCATCCACGTGTGTTATGC 59.603 52.381 15.65 0.00 0.00 3.14
489 543 3.859961 CCACGTGTGTTATGCTCTAGAAG 59.140 47.826 15.65 0.00 0.00 2.85
491 545 5.344066 CACGTGTGTTATGCTCTAGAAGAT 58.656 41.667 7.58 0.00 0.00 2.40
492 546 5.457148 CACGTGTGTTATGCTCTAGAAGATC 59.543 44.000 7.58 0.00 0.00 2.75
501 555 3.304829 GCTCTAGAAGATCTTCCCCACT 58.695 50.000 28.01 14.25 40.33 4.00
533 587 9.077885 TGTTTCTCATGGGCCTTTATTATTATC 57.922 33.333 4.53 0.00 0.00 1.75
564 618 6.661304 AGAAATGCAGAATTCTCAAAAGGT 57.339 33.333 4.57 0.00 30.16 3.50
571 625 7.596494 TGCAGAATTCTCAAAAGGTAGAAATG 58.404 34.615 4.57 0.00 35.47 2.32
572 626 7.231317 TGCAGAATTCTCAAAAGGTAGAAATGT 59.769 33.333 4.57 0.00 35.47 2.71
575 629 9.354673 AGAATTCTCAAAAGGTAGAAATGTGAA 57.645 29.630 0.88 0.00 35.47 3.18
576 630 9.965824 GAATTCTCAAAAGGTAGAAATGTGAAA 57.034 29.630 0.00 0.00 35.47 2.69
605 660 2.925578 CATGATTGCGGTGTCATGTT 57.074 45.000 7.08 0.00 44.12 2.71
627 682 7.674120 TGTTGTCCTCAATCCTATATGATCAG 58.326 38.462 0.09 0.00 35.92 2.90
632 687 8.811017 GTCCTCAATCCTATATGATCAGAAAGA 58.189 37.037 0.09 0.00 0.00 2.52
633 688 8.811017 TCCTCAATCCTATATGATCAGAAAGAC 58.189 37.037 0.09 0.00 0.00 3.01
634 689 8.591940 CCTCAATCCTATATGATCAGAAAGACA 58.408 37.037 0.09 0.00 0.00 3.41
635 690 9.993454 CTCAATCCTATATGATCAGAAAGACAA 57.007 33.333 0.09 0.00 0.00 3.18
640 695 9.958180 TCCTATATGATCAGAAAGACAAACAAA 57.042 29.630 0.09 0.00 0.00 2.83
646 701 8.338985 TGATCAGAAAGACAAACAAAAATTCG 57.661 30.769 0.00 0.00 0.00 3.34
656 711 9.796120 AGACAAACAAAAATTCGTATGAAAGAA 57.204 25.926 0.55 0.00 37.71 2.52
704 759 8.690840 CAAACGAATTCTACCAAAAGATTTCAC 58.309 33.333 3.52 0.00 36.40 3.18
720 775 6.624423 AGATTTCACTGGATGGAAATTTTCG 58.376 36.000 3.17 0.00 42.18 3.46
738 809 6.774354 TTTTCGTCCAGACATAGTACAAAC 57.226 37.500 0.00 0.00 0.00 2.93
739 810 5.717078 TTCGTCCAGACATAGTACAAACT 57.283 39.130 0.00 0.00 39.91 2.66
740 811 6.822667 TTCGTCCAGACATAGTACAAACTA 57.177 37.500 0.00 0.00 42.35 2.24
742 813 7.400599 TCGTCCAGACATAGTACAAACTATT 57.599 36.000 0.00 0.00 44.88 1.73
743 814 7.478322 TCGTCCAGACATAGTACAAACTATTC 58.522 38.462 0.00 0.00 44.88 1.75
744 815 7.338703 TCGTCCAGACATAGTACAAACTATTCT 59.661 37.037 0.00 1.54 44.88 2.40
745 816 8.618677 CGTCCAGACATAGTACAAACTATTCTA 58.381 37.037 0.00 0.00 44.88 2.10
748 819 9.751542 CCAGACATAGTACAAACTATTCTAAGG 57.248 37.037 0.00 0.38 44.88 2.69
769 840 9.262358 CTAAGGAAAAATTAGGACGGATTCTAG 57.738 37.037 0.00 0.00 0.00 2.43
781 852 3.068307 ACGGATTCTAGTCCCTTGAATCG 59.932 47.826 16.55 14.62 46.03 3.34
787 858 5.477607 TCTAGTCCCTTGAATCGAACAAA 57.522 39.130 9.11 0.00 0.00 2.83
794 865 4.681025 CCCTTGAATCGAACAAACAACATG 59.319 41.667 9.11 0.00 0.00 3.21
871 946 5.836024 ATCAAAGGTACACCCACTTCTAA 57.164 39.130 0.00 0.00 36.42 2.10
891 966 0.179000 AATCCTCTGCCCATCACGTC 59.821 55.000 0.00 0.00 0.00 4.34
898 973 3.024609 CCCATCACGTCGCGATCG 61.025 66.667 23.00 23.00 0.00 3.69
899 974 3.024609 CCATCACGTCGCGATCGG 61.025 66.667 26.31 16.51 36.13 4.18
1319 1438 2.954611 CGTCACCGTCTCTCTGCA 59.045 61.111 0.00 0.00 0.00 4.41
1438 1560 1.831527 TTTTTCCCACTCGACGGGT 59.168 52.632 13.67 0.00 44.81 5.28
1869 2057 3.385384 CTCCAGTCCCTGCTCGCA 61.385 66.667 0.00 0.00 0.00 5.10
2214 4297 2.428902 CGGTTTGACGCGTACGGA 60.429 61.111 13.97 0.00 46.04 4.69
2278 4361 3.047877 CGAACAAGGTGGACGGGC 61.048 66.667 0.00 0.00 0.00 6.13
2399 4483 5.529430 AGTTCATCTATCAGGACTGACGTAG 59.471 44.000 3.82 4.15 43.11 3.51
2423 4507 3.821033 ACAATAGTTCTCCCAGTTTGTGC 59.179 43.478 0.00 0.00 0.00 4.57
2430 4514 2.677003 CCCAGTTTGTGCGCCTACG 61.677 63.158 4.18 0.00 44.07 3.51
2483 4806 7.047460 ACTGGATTTCTAAATCATGGAATGC 57.953 36.000 15.36 0.00 46.21 3.56
2490 4813 2.852714 AATCATGGAATGCCCTTGGA 57.147 45.000 0.00 0.00 46.21 3.53
2502 4825 3.777087 TGCCCTTGGAAAATTCTCATGA 58.223 40.909 0.00 0.00 0.00 3.07
2508 4831 6.161381 CCTTGGAAAATTCTCATGAGGTTTG 58.839 40.000 22.42 10.83 0.00 2.93
2530 4853 0.178068 CTAATGCTAGTGCCCGTGGT 59.822 55.000 0.00 0.00 38.71 4.16
2543 4866 2.941415 GCCCGTGGTGATCTTCAAATCT 60.941 50.000 0.00 0.00 0.00 2.40
2550 4873 7.279981 CCGTGGTGATCTTCAAATCTTAATGTA 59.720 37.037 0.00 0.00 0.00 2.29
2630 4956 4.850347 AACCTGTGCGTAGTAGATATCC 57.150 45.455 0.00 0.00 0.00 2.59
2635 4961 4.586884 TGTGCGTAGTAGATATCCCCTAG 58.413 47.826 0.00 0.00 0.00 3.02
2665 4991 9.062524 TCTTCTAAATCTTTTCAAACCAATCGA 57.937 29.630 0.00 0.00 0.00 3.59
2674 5000 8.289618 TCTTTTCAAACCAATCGAGTCTAATTG 58.710 33.333 7.71 7.71 33.57 2.32
2677 5003 8.610248 TTCAAACCAATCGAGTCTAATTGTAA 57.390 30.769 11.80 0.00 32.20 2.41
2705 5031 7.919690 TCGATTTAGTCAATGTGGAATCATTC 58.080 34.615 0.00 0.00 36.10 2.67
2711 5037 9.739276 TTAGTCAATGTGGAATCATTCTTAAGT 57.261 29.630 1.63 0.00 36.10 2.24
2712 5038 8.048534 AGTCAATGTGGAATCATTCTTAAGTG 57.951 34.615 1.63 0.00 36.10 3.16
2713 5039 7.121759 AGTCAATGTGGAATCATTCTTAAGTGG 59.878 37.037 1.63 0.00 36.10 4.00
2714 5040 7.121168 GTCAATGTGGAATCATTCTTAAGTGGA 59.879 37.037 1.63 0.00 36.10 4.02
2715 5041 7.121168 TCAATGTGGAATCATTCTTAAGTGGAC 59.879 37.037 1.63 0.00 36.10 4.02
2716 5042 5.875224 TGTGGAATCATTCTTAAGTGGACA 58.125 37.500 1.63 0.00 0.00 4.02
2717 5043 6.484288 TGTGGAATCATTCTTAAGTGGACAT 58.516 36.000 1.63 0.00 0.00 3.06
2718 5044 6.947733 TGTGGAATCATTCTTAAGTGGACATT 59.052 34.615 1.63 0.00 0.00 2.71
2719 5045 8.106462 TGTGGAATCATTCTTAAGTGGACATTA 58.894 33.333 1.63 0.00 0.00 1.90
2720 5046 8.616076 GTGGAATCATTCTTAAGTGGACATTAG 58.384 37.037 1.63 0.00 0.00 1.73
2721 5047 8.548025 TGGAATCATTCTTAAGTGGACATTAGA 58.452 33.333 1.63 0.00 0.00 2.10
2722 5048 8.831550 GGAATCATTCTTAAGTGGACATTAGAC 58.168 37.037 1.63 0.00 0.00 2.59
2723 5049 8.425577 AATCATTCTTAAGTGGACATTAGACG 57.574 34.615 1.63 0.00 0.00 4.18
2724 5050 6.338146 TCATTCTTAAGTGGACATTAGACGG 58.662 40.000 1.63 0.00 0.00 4.79
2725 5051 5.988310 TTCTTAAGTGGACATTAGACGGA 57.012 39.130 1.63 0.00 0.00 4.69
2726 5052 6.540438 TTCTTAAGTGGACATTAGACGGAT 57.460 37.500 1.63 0.00 0.00 4.18
2727 5053 6.145338 TCTTAAGTGGACATTAGACGGATC 57.855 41.667 1.63 0.00 0.00 3.36
2728 5054 5.655090 TCTTAAGTGGACATTAGACGGATCA 59.345 40.000 1.63 0.00 0.00 2.92
2729 5055 4.392921 AAGTGGACATTAGACGGATCAG 57.607 45.455 0.00 0.00 0.00 2.90
2730 5056 3.366396 AGTGGACATTAGACGGATCAGT 58.634 45.455 0.00 0.00 0.00 3.41
2731 5057 3.131223 AGTGGACATTAGACGGATCAGTG 59.869 47.826 2.27 0.00 0.00 3.66
2732 5058 2.159099 TGGACATTAGACGGATCAGTGC 60.159 50.000 2.27 0.00 0.00 4.40
2733 5059 2.159099 GGACATTAGACGGATCAGTGCA 60.159 50.000 2.27 0.00 0.00 4.57
2734 5060 3.119291 GACATTAGACGGATCAGTGCAG 58.881 50.000 2.27 0.00 0.00 4.41
2735 5061 2.497675 ACATTAGACGGATCAGTGCAGT 59.502 45.455 2.27 0.00 0.00 4.40
2736 5062 2.654749 TTAGACGGATCAGTGCAGTG 57.345 50.000 15.76 15.76 0.00 3.66
2737 5063 0.173481 TAGACGGATCAGTGCAGTGC 59.827 55.000 17.07 8.58 0.00 4.40
2738 5064 2.046892 ACGGATCAGTGCAGTGCC 60.047 61.111 17.07 11.95 0.00 5.01
2739 5065 2.046988 CGGATCAGTGCAGTGCCA 60.047 61.111 17.07 0.54 0.00 4.92
2740 5066 1.672030 CGGATCAGTGCAGTGCCAA 60.672 57.895 17.07 0.00 0.00 4.52
2741 5067 1.878775 GGATCAGTGCAGTGCCAAC 59.121 57.895 17.07 4.92 0.00 3.77
2742 5068 1.589716 GGATCAGTGCAGTGCCAACC 61.590 60.000 17.07 12.30 0.00 3.77
2743 5069 1.589716 GATCAGTGCAGTGCCAACCC 61.590 60.000 17.07 0.00 0.00 4.11
2744 5070 2.072874 ATCAGTGCAGTGCCAACCCT 62.073 55.000 17.07 0.00 0.00 4.34
2745 5071 1.829533 CAGTGCAGTGCCAACCCTT 60.830 57.895 13.72 0.00 0.00 3.95
2746 5072 1.076044 AGTGCAGTGCCAACCCTTT 60.076 52.632 13.72 0.00 0.00 3.11
2747 5073 0.687427 AGTGCAGTGCCAACCCTTTT 60.687 50.000 13.72 0.00 0.00 2.27
2748 5074 1.036707 GTGCAGTGCCAACCCTTTTA 58.963 50.000 13.72 0.00 0.00 1.52
2749 5075 1.036707 TGCAGTGCCAACCCTTTTAC 58.963 50.000 13.72 0.00 0.00 2.01
2750 5076 1.328279 GCAGTGCCAACCCTTTTACT 58.672 50.000 2.85 0.00 0.00 2.24
2751 5077 1.000274 GCAGTGCCAACCCTTTTACTG 60.000 52.381 2.85 0.00 38.74 2.74
2752 5078 2.582052 CAGTGCCAACCCTTTTACTGA 58.418 47.619 0.00 0.00 38.16 3.41
2753 5079 2.554032 CAGTGCCAACCCTTTTACTGAG 59.446 50.000 0.00 0.00 38.16 3.35
2754 5080 2.441750 AGTGCCAACCCTTTTACTGAGA 59.558 45.455 0.00 0.00 0.00 3.27
2755 5081 3.117663 AGTGCCAACCCTTTTACTGAGAA 60.118 43.478 0.00 0.00 0.00 2.87
2756 5082 3.826729 GTGCCAACCCTTTTACTGAGAAT 59.173 43.478 0.00 0.00 0.00 2.40
2757 5083 3.826157 TGCCAACCCTTTTACTGAGAATG 59.174 43.478 0.00 0.00 0.00 2.67
2767 5093 7.202001 CCCTTTTACTGAGAATGGGAAAAAGTT 60.202 37.037 10.80 0.00 41.61 2.66
2768 5094 7.867909 CCTTTTACTGAGAATGGGAAAAAGTTC 59.132 37.037 0.00 0.00 32.98 3.01
2820 5146 2.083774 GCGAAATGAACCCTCATGTCA 58.916 47.619 6.20 0.00 43.94 3.58
2847 5173 1.495951 GTCGATTGCACCGTGAACC 59.504 57.895 1.65 0.00 0.00 3.62
2857 5183 0.038166 ACCGTGAACCATGCAATCCT 59.962 50.000 0.00 0.00 0.00 3.24
2869 5195 4.831155 CCATGCAATCCTGGTCTAAATCAT 59.169 41.667 0.00 0.00 0.00 2.45
2874 5200 6.064717 GCAATCCTGGTCTAAATCATAACCT 58.935 40.000 0.00 0.00 32.82 3.50
2895 5221 2.156098 TGGGTCGTTTGAGGCATAAAC 58.844 47.619 6.56 6.56 35.29 2.01
2919 5245 2.028748 GCTGATGTGGCAAAGGTCAAAT 60.029 45.455 0.00 0.00 0.00 2.32
2934 5260 3.696548 GGTCAAATGGGATTCTTCTGACC 59.303 47.826 2.82 2.82 43.18 4.02
2951 5277 4.038080 CGGTGGGCCAAAGAACGC 62.038 66.667 8.40 0.00 34.09 4.84
2953 5279 2.597510 GTGGGCCAAAGAACGCCT 60.598 61.111 8.40 0.00 45.01 5.52
2955 5281 0.679960 GTGGGCCAAAGAACGCCTAT 60.680 55.000 8.40 0.00 45.01 2.57
2990 5333 1.741770 CCGTCGGCCCTTTCTTCTG 60.742 63.158 0.00 0.00 0.00 3.02
2995 5340 1.076332 CGGCCCTTTCTTCTGTTACG 58.924 55.000 0.00 0.00 0.00 3.18
2999 5344 2.076863 CCCTTTCTTCTGTTACGCTGG 58.923 52.381 0.00 0.00 0.00 4.85
3034 5379 4.530388 CGTGCAAGATAATTCGAATGCAT 58.470 39.130 20.89 13.48 40.41 3.96
3039 5384 5.506151 GCAAGATAATTCGAATGCATGACCA 60.506 40.000 12.25 0.00 33.68 4.02
3090 5435 2.596851 GGCCACCTCTCCTCTTGCA 61.597 63.158 0.00 0.00 0.00 4.08
3164 5514 6.101332 GCTCCTTAGCTAGATGATTCTCATG 58.899 44.000 0.00 0.00 45.85 3.07
3257 5610 8.576936 AAGTTTCTTACAAAACACGTGAAAAA 57.423 26.923 25.01 6.47 40.77 1.94
3315 5669 1.202486 TCTGCGAACTTGTTTCCGACT 60.202 47.619 0.00 0.00 0.00 4.18
3316 5670 1.597663 CTGCGAACTTGTTTCCGACTT 59.402 47.619 0.00 0.00 0.00 3.01
3381 5735 2.116125 GGCCAGCCCAGTTCAACT 59.884 61.111 0.00 0.00 0.00 3.16
3382 5736 1.531602 GGCCAGCCCAGTTCAACTT 60.532 57.895 0.00 0.00 0.00 2.66
3383 5737 1.527433 GGCCAGCCCAGTTCAACTTC 61.527 60.000 0.00 0.00 0.00 3.01
3384 5738 0.823356 GCCAGCCCAGTTCAACTTCA 60.823 55.000 0.00 0.00 0.00 3.02
3385 5739 0.954452 CCAGCCCAGTTCAACTTCAC 59.046 55.000 0.00 0.00 0.00 3.18
3386 5740 1.477558 CCAGCCCAGTTCAACTTCACT 60.478 52.381 0.00 0.00 0.00 3.41
3387 5741 2.301346 CAGCCCAGTTCAACTTCACTT 58.699 47.619 0.00 0.00 0.00 3.16
3388 5742 2.689983 CAGCCCAGTTCAACTTCACTTT 59.310 45.455 0.00 0.00 0.00 2.66
3389 5743 3.882888 CAGCCCAGTTCAACTTCACTTTA 59.117 43.478 0.00 0.00 0.00 1.85
3390 5744 3.883489 AGCCCAGTTCAACTTCACTTTAC 59.117 43.478 0.00 0.00 0.00 2.01
3391 5745 3.630312 GCCCAGTTCAACTTCACTTTACA 59.370 43.478 0.00 0.00 0.00 2.41
3392 5746 4.097286 GCCCAGTTCAACTTCACTTTACAA 59.903 41.667 0.00 0.00 0.00 2.41
3393 5747 5.221244 GCCCAGTTCAACTTCACTTTACAAT 60.221 40.000 0.00 0.00 0.00 2.71
3394 5748 6.438763 CCCAGTTCAACTTCACTTTACAATC 58.561 40.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 6.043706 CACAGAACCCCTCCATTATATTCTCT 59.956 42.308 0.00 0.00 0.00 3.10
96 97 0.248866 CACGGTTTTGCACAGAACCC 60.249 55.000 15.27 0.00 41.14 4.11
101 102 1.268539 GGACTTCACGGTTTTGCACAG 60.269 52.381 0.00 0.00 0.00 3.66
110 111 6.293698 ACAAATTAAGTAAGGACTTCACGGT 58.706 36.000 0.00 0.00 42.50 4.83
111 112 6.796705 ACAAATTAAGTAAGGACTTCACGG 57.203 37.500 0.00 0.00 42.50 4.94
112 113 9.367444 AGATACAAATTAAGTAAGGACTTCACG 57.633 33.333 0.00 0.00 42.50 4.35
136 137 2.028112 GCCACTGAGTGTCCAACATAGA 60.028 50.000 12.15 0.00 0.00 1.98
149 150 1.411977 CTACCATCCTGAGCCACTGAG 59.588 57.143 0.00 0.00 0.00 3.35
153 154 2.298729 GAGATCTACCATCCTGAGCCAC 59.701 54.545 0.00 0.00 0.00 5.01
160 161 3.713003 TGTGTGTGAGATCTACCATCCT 58.287 45.455 0.00 0.00 0.00 3.24
172 173 8.812147 TTAGTGTTACTAAGATTGTGTGTGAG 57.188 34.615 0.00 0.00 35.89 3.51
192 246 2.559668 TGACTGTCGTTACCCCTTAGTG 59.440 50.000 2.98 0.00 0.00 2.74
193 247 2.880443 TGACTGTCGTTACCCCTTAGT 58.120 47.619 2.98 0.00 0.00 2.24
221 275 5.516984 AGTAGGCCATGTAGTAGTAACAGT 58.483 41.667 5.01 0.00 0.00 3.55
222 276 5.593095 TGAGTAGGCCATGTAGTAGTAACAG 59.407 44.000 5.01 0.00 0.00 3.16
230 284 3.631087 ATGACCTGAGTAGGCCATGTAGT 60.631 47.826 5.01 0.00 44.43 2.73
247 301 1.818674 GTGGTTGGGATCACAATGACC 59.181 52.381 14.71 12.05 34.32 4.02
271 325 8.585881 TCACATAACCTCACCTTATATAAGAGC 58.414 37.037 21.75 0.00 35.33 4.09
287 341 5.886474 TCGTGTCTAGATTCTCACATAACCT 59.114 40.000 10.72 0.00 0.00 3.50
343 397 6.037940 CTCATGTGAGGAGTTTGGATACAATG 59.962 42.308 2.03 0.00 46.64 2.82
387 441 7.639113 TGCAAGAGGTAATACCCTATTTTTG 57.361 36.000 5.71 1.07 39.75 2.44
390 444 8.041143 TGTATGCAAGAGGTAATACCCTATTT 57.959 34.615 5.71 0.00 39.75 1.40
392 446 7.457852 TCATGTATGCAAGAGGTAATACCCTAT 59.542 37.037 5.71 0.00 39.75 2.57
422 476 3.627577 CACGGGGGATTTTACTCAGATTG 59.372 47.826 0.00 0.00 0.00 2.67
435 489 1.613061 GGGATTTCACACGGGGGAT 59.387 57.895 0.00 0.00 0.00 3.85
436 490 2.961893 CGGGATTTCACACGGGGGA 61.962 63.158 0.00 0.00 32.69 4.81
438 492 0.741927 GTACGGGATTTCACACGGGG 60.742 60.000 0.00 0.00 41.28 5.73
442 496 3.429960 GGTCTAGGTACGGGATTTCACAC 60.430 52.174 0.00 0.00 0.00 3.82
452 506 0.666913 CGTGGATGGTCTAGGTACGG 59.333 60.000 0.00 0.00 0.00 4.02
474 528 5.305644 GGGGAAGATCTTCTAGAGCATAACA 59.694 44.000 29.64 0.00 39.45 2.41
478 532 3.645687 GTGGGGAAGATCTTCTAGAGCAT 59.354 47.826 29.64 0.00 39.45 3.79
481 535 5.300792 GTGTAGTGGGGAAGATCTTCTAGAG 59.699 48.000 29.64 0.00 39.45 2.43
489 543 3.914426 ACATGTGTAGTGGGGAAGATC 57.086 47.619 0.00 0.00 0.00 2.75
491 545 3.650942 AGAAACATGTGTAGTGGGGAAGA 59.349 43.478 0.00 0.00 0.00 2.87
492 546 4.003648 GAGAAACATGTGTAGTGGGGAAG 58.996 47.826 0.00 0.00 0.00 3.46
540 594 6.685657 ACCTTTTGAGAATTCTGCATTTCTC 58.314 36.000 14.00 19.57 45.22 2.87
541 595 6.661304 ACCTTTTGAGAATTCTGCATTTCT 57.339 33.333 14.00 6.44 34.95 2.52
595 650 2.749621 GGATTGAGGACAACATGACACC 59.250 50.000 0.00 0.00 38.90 4.16
605 660 8.496534 TTTCTGATCATATAGGATTGAGGACA 57.503 34.615 0.71 0.00 0.00 4.02
646 701 9.229784 CATGTGCTATCAAACATTCTTTCATAC 57.770 33.333 0.00 0.00 34.81 2.39
656 711 6.028146 TGCTTTTCATGTGCTATCAAACAT 57.972 33.333 0.00 0.00 37.50 2.71
704 759 4.361451 CTGGACGAAAATTTCCATCCAG 57.639 45.455 26.14 26.14 45.52 3.86
738 809 9.780186 ATCCGTCCTAATTTTTCCTTAGAATAG 57.220 33.333 0.00 0.00 0.00 1.73
740 811 9.121658 GAATCCGTCCTAATTTTTCCTTAGAAT 57.878 33.333 0.00 0.00 0.00 2.40
741 812 8.326529 AGAATCCGTCCTAATTTTTCCTTAGAA 58.673 33.333 0.00 0.00 0.00 2.10
742 813 7.858498 AGAATCCGTCCTAATTTTTCCTTAGA 58.142 34.615 0.00 0.00 0.00 2.10
743 814 9.262358 CTAGAATCCGTCCTAATTTTTCCTTAG 57.738 37.037 0.00 0.00 0.00 2.18
744 815 8.765517 ACTAGAATCCGTCCTAATTTTTCCTTA 58.234 33.333 0.00 0.00 0.00 2.69
745 816 7.631007 ACTAGAATCCGTCCTAATTTTTCCTT 58.369 34.615 0.00 0.00 0.00 3.36
746 817 7.196637 ACTAGAATCCGTCCTAATTTTTCCT 57.803 36.000 0.00 0.00 0.00 3.36
747 818 6.482641 GGACTAGAATCCGTCCTAATTTTTCC 59.517 42.308 10.84 0.00 44.90 3.13
748 819 6.482641 GGGACTAGAATCCGTCCTAATTTTTC 59.517 42.308 15.77 0.00 46.94 2.29
749 820 6.158169 AGGGACTAGAATCCGTCCTAATTTTT 59.842 38.462 15.77 0.00 46.94 1.94
750 821 5.666265 AGGGACTAGAATCCGTCCTAATTTT 59.334 40.000 15.77 0.00 46.94 1.82
751 822 5.217400 AGGGACTAGAATCCGTCCTAATTT 58.783 41.667 15.77 0.04 46.94 1.82
756 827 2.024273 TCAAGGGACTAGAATCCGTCCT 60.024 50.000 15.77 3.57 46.94 3.85
758 829 4.623002 GATTCAAGGGACTAGAATCCGTC 58.377 47.826 0.00 0.00 40.93 4.79
769 840 4.201970 TGTTGTTTGTTCGATTCAAGGGAC 60.202 41.667 0.00 0.00 0.00 4.46
774 845 7.252965 TCTACATGTTGTTTGTTCGATTCAA 57.747 32.000 2.30 0.00 0.00 2.69
794 865 9.457436 TTGGACCCTTAGATATTTGTTTTCTAC 57.543 33.333 0.00 0.00 0.00 2.59
847 918 5.836024 AGAAGTGGGTGTACCTTTGATTA 57.164 39.130 0.44 0.00 41.11 1.75
871 946 0.620556 ACGTGATGGGCAGAGGATTT 59.379 50.000 0.00 0.00 0.00 2.17
988 1063 2.612212 CCGTCGCCATGCTTAACTATTT 59.388 45.455 0.00 0.00 0.00 1.40
1606 1749 4.194720 GAGCATCTCGGCGTCGGT 62.195 66.667 10.62 0.00 39.27 4.69
1869 2057 3.606662 ACTGAGCGCCAGACGTGT 61.607 61.111 26.07 7.23 45.78 4.49
2202 4285 1.725625 GTCGTTTCCGTACGCGTCA 60.726 57.895 18.63 0.00 41.16 4.35
2214 4297 2.142104 TCCCCACCCGAAGTCGTTT 61.142 57.895 0.00 0.00 37.74 3.60
2278 4361 2.177531 CTCGTACACCGTCACCCG 59.822 66.667 0.00 0.00 37.94 5.28
2399 4483 5.106673 GCACAAACTGGGAGAACTATTGTAC 60.107 44.000 0.00 0.00 0.00 2.90
2400 4484 5.001232 GCACAAACTGGGAGAACTATTGTA 58.999 41.667 0.00 0.00 0.00 2.41
2401 4485 3.821033 GCACAAACTGGGAGAACTATTGT 59.179 43.478 0.00 0.00 0.00 2.71
2423 4507 1.434555 TGTTGAAATGGACGTAGGCG 58.565 50.000 0.00 0.00 44.93 5.52
2430 4514 5.405935 AATAAGCCCTTGTTGAAATGGAC 57.594 39.130 0.00 0.00 0.00 4.02
2483 4806 4.347607 ACCTCATGAGAATTTTCCAAGGG 58.652 43.478 24.62 5.78 0.00 3.95
2502 4825 3.610911 GCACTAGCATTAGGTCAAACCT 58.389 45.455 3.77 3.77 46.01 3.50
2508 4831 0.464452 ACGGGCACTAGCATTAGGTC 59.536 55.000 0.00 0.00 44.61 3.85
2523 4846 2.991250 AGATTTGAAGATCACCACGGG 58.009 47.619 0.00 0.00 0.00 5.28
2610 4936 3.155501 GGGATATCTACTACGCACAGGT 58.844 50.000 2.05 0.00 0.00 4.00
2611 4937 2.492484 GGGGATATCTACTACGCACAGG 59.508 54.545 2.05 0.00 0.00 4.00
2648 4974 7.979444 ATTAGACTCGATTGGTTTGAAAAGA 57.021 32.000 0.00 0.00 0.00 2.52
2649 4975 8.076178 ACAATTAGACTCGATTGGTTTGAAAAG 58.924 33.333 13.18 0.00 37.53 2.27
2650 4976 7.936584 ACAATTAGACTCGATTGGTTTGAAAA 58.063 30.769 13.18 0.00 37.53 2.29
2674 5000 7.591006 TCCACATTGACTAAATCGAGTTTAC 57.409 36.000 2.37 0.00 0.00 2.01
2677 5003 6.878923 TGATTCCACATTGACTAAATCGAGTT 59.121 34.615 2.72 2.72 0.00 3.01
2687 5013 7.121759 CCACTTAAGAATGATTCCACATTGACT 59.878 37.037 10.09 0.00 40.03 3.41
2688 5014 7.121168 TCCACTTAAGAATGATTCCACATTGAC 59.879 37.037 10.09 0.00 40.03 3.18
2705 5031 5.902681 TGATCCGTCTAATGTCCACTTAAG 58.097 41.667 0.00 0.00 0.00 1.85
2709 5035 3.131223 CACTGATCCGTCTAATGTCCACT 59.869 47.826 0.00 0.00 0.00 4.00
2710 5036 3.448686 CACTGATCCGTCTAATGTCCAC 58.551 50.000 0.00 0.00 0.00 4.02
2711 5037 2.159099 GCACTGATCCGTCTAATGTCCA 60.159 50.000 0.00 0.00 0.00 4.02
2712 5038 2.159099 TGCACTGATCCGTCTAATGTCC 60.159 50.000 0.00 0.00 0.00 4.02
2713 5039 3.119291 CTGCACTGATCCGTCTAATGTC 58.881 50.000 0.00 0.00 0.00 3.06
2714 5040 2.497675 ACTGCACTGATCCGTCTAATGT 59.502 45.455 0.00 0.00 0.00 2.71
2715 5041 2.862536 CACTGCACTGATCCGTCTAATG 59.137 50.000 0.00 0.00 0.00 1.90
2716 5042 2.739932 GCACTGCACTGATCCGTCTAAT 60.740 50.000 0.00 0.00 0.00 1.73
2717 5043 1.404181 GCACTGCACTGATCCGTCTAA 60.404 52.381 0.00 0.00 0.00 2.10
2718 5044 0.173481 GCACTGCACTGATCCGTCTA 59.827 55.000 0.00 0.00 0.00 2.59
2719 5045 1.079543 GCACTGCACTGATCCGTCT 60.080 57.895 0.00 0.00 0.00 4.18
2720 5046 2.103042 GGCACTGCACTGATCCGTC 61.103 63.158 2.82 0.00 0.00 4.79
2721 5047 2.046892 GGCACTGCACTGATCCGT 60.047 61.111 2.82 0.00 0.00 4.69
2722 5048 1.672030 TTGGCACTGCACTGATCCG 60.672 57.895 2.82 0.00 0.00 4.18
2723 5049 1.589716 GGTTGGCACTGCACTGATCC 61.590 60.000 2.82 0.00 0.00 3.36
2724 5050 1.589716 GGGTTGGCACTGCACTGATC 61.590 60.000 2.82 0.00 0.00 2.92
2725 5051 1.604593 GGGTTGGCACTGCACTGAT 60.605 57.895 2.82 0.00 0.00 2.90
2726 5052 2.203337 GGGTTGGCACTGCACTGA 60.203 61.111 2.82 0.00 0.00 3.41
2727 5053 1.394266 AAAGGGTTGGCACTGCACTG 61.394 55.000 2.82 0.00 0.00 3.66
2728 5054 0.687427 AAAAGGGTTGGCACTGCACT 60.687 50.000 2.82 0.00 0.00 4.40
2729 5055 1.036707 TAAAAGGGTTGGCACTGCAC 58.963 50.000 2.82 0.00 0.00 4.57
2730 5056 1.036707 GTAAAAGGGTTGGCACTGCA 58.963 50.000 2.82 0.00 0.00 4.41
2731 5057 1.000274 CAGTAAAAGGGTTGGCACTGC 60.000 52.381 0.00 0.00 0.00 4.40
2732 5058 2.554032 CTCAGTAAAAGGGTTGGCACTG 59.446 50.000 0.00 0.00 35.76 3.66
2733 5059 2.441750 TCTCAGTAAAAGGGTTGGCACT 59.558 45.455 0.00 0.00 0.00 4.40
2734 5060 2.858745 TCTCAGTAAAAGGGTTGGCAC 58.141 47.619 0.00 0.00 0.00 5.01
2735 5061 3.586470 TTCTCAGTAAAAGGGTTGGCA 57.414 42.857 0.00 0.00 0.00 4.92
2736 5062 3.193479 CCATTCTCAGTAAAAGGGTTGGC 59.807 47.826 0.00 0.00 0.00 4.52
2737 5063 3.763897 CCCATTCTCAGTAAAAGGGTTGG 59.236 47.826 0.00 0.00 0.00 3.77
2738 5064 4.662278 TCCCATTCTCAGTAAAAGGGTTG 58.338 43.478 0.00 0.00 36.24 3.77
2739 5065 5.333566 TTCCCATTCTCAGTAAAAGGGTT 57.666 39.130 0.00 0.00 36.24 4.11
2740 5066 5.333566 TTTCCCATTCTCAGTAAAAGGGT 57.666 39.130 0.00 0.00 36.24 4.34
2741 5067 6.267699 ACTTTTTCCCATTCTCAGTAAAAGGG 59.732 38.462 0.00 0.00 36.15 3.95
2742 5068 7.290110 ACTTTTTCCCATTCTCAGTAAAAGG 57.710 36.000 0.00 0.00 36.15 3.11
2743 5069 8.413229 TGAACTTTTTCCCATTCTCAGTAAAAG 58.587 33.333 0.00 0.00 37.23 2.27
2744 5070 8.299990 TGAACTTTTTCCCATTCTCAGTAAAA 57.700 30.769 0.00 0.00 0.00 1.52
2745 5071 7.889873 TGAACTTTTTCCCATTCTCAGTAAA 57.110 32.000 0.00 0.00 0.00 2.01
2746 5072 8.477419 AATGAACTTTTTCCCATTCTCAGTAA 57.523 30.769 0.00 0.00 0.00 2.24
2747 5073 8.477419 AAATGAACTTTTTCCCATTCTCAGTA 57.523 30.769 0.00 0.00 0.00 2.74
2748 5074 6.983906 AATGAACTTTTTCCCATTCTCAGT 57.016 33.333 0.00 0.00 0.00 3.41
2749 5075 9.762933 TTAAAATGAACTTTTTCCCATTCTCAG 57.237 29.630 0.00 0.00 38.09 3.35
2755 5081 9.546428 CAGAGTTTAAAATGAACTTTTTCCCAT 57.454 29.630 0.00 0.00 37.46 4.00
2756 5082 8.754080 TCAGAGTTTAAAATGAACTTTTTCCCA 58.246 29.630 0.00 0.00 37.46 4.37
2757 5083 9.594478 TTCAGAGTTTAAAATGAACTTTTTCCC 57.406 29.630 0.00 0.00 37.46 3.97
2778 5104 4.202223 GCCCGACCTCTACAATAATTCAGA 60.202 45.833 0.00 0.00 0.00 3.27
2784 5110 1.766494 TCGCCCGACCTCTACAATAA 58.234 50.000 0.00 0.00 0.00 1.40
2786 5112 0.899720 TTTCGCCCGACCTCTACAAT 59.100 50.000 0.00 0.00 0.00 2.71
2787 5113 0.899720 ATTTCGCCCGACCTCTACAA 59.100 50.000 0.00 0.00 0.00 2.41
2788 5114 0.174845 CATTTCGCCCGACCTCTACA 59.825 55.000 0.00 0.00 0.00 2.74
2820 5146 0.808755 GTGCAATCGACCGGGATTTT 59.191 50.000 6.32 0.00 34.50 1.82
2847 5173 7.365741 GTTATGATTTAGACCAGGATTGCATG 58.634 38.462 0.00 0.00 0.00 4.06
2857 5183 5.628200 CGACCCAAGGTTATGATTTAGACCA 60.628 44.000 0.00 0.00 35.25 4.02
2869 5195 1.543871 GCCTCAAACGACCCAAGGTTA 60.544 52.381 0.00 0.00 35.25 2.85
2874 5200 2.554893 GTTTATGCCTCAAACGACCCAA 59.445 45.455 0.00 0.00 0.00 4.12
2895 5221 1.210931 CCTTTGCCACATCAGCGTG 59.789 57.895 0.00 0.00 36.61 5.34
2919 5245 0.613260 CACCGGTCAGAAGAATCCCA 59.387 55.000 2.59 0.00 0.00 4.37
2934 5260 4.038080 GCGTTCTTTGGCCCACCG 62.038 66.667 0.00 0.00 39.70 4.94
2972 5298 1.741770 CAGAAGAAAGGGCCGACGG 60.742 63.158 10.29 10.29 0.00 4.79
2975 5317 1.337447 CGTAACAGAAGAAAGGGCCGA 60.337 52.381 0.00 0.00 0.00 5.54
3039 5384 3.380320 GTGTAGTTTGCACCAAAAGAGGT 59.620 43.478 0.00 0.00 44.48 3.85
3248 5601 7.333174 AGTTTGTGGATTTGAAATTTTTCACGT 59.667 29.630 5.26 0.00 45.99 4.49
3285 5639 5.957842 ACAAGTTCGCAGATTATGGAAAA 57.042 34.783 0.00 0.00 35.04 2.29
3299 5653 4.296690 AGTCTAAGTCGGAAACAAGTTCG 58.703 43.478 0.00 0.00 37.08 3.95
3303 5657 5.526111 TGGAAAAGTCTAAGTCGGAAACAAG 59.474 40.000 0.00 0.00 0.00 3.16
3315 5669 8.912988 ACAATTCACAGATTTGGAAAAGTCTAA 58.087 29.630 6.59 0.00 30.25 2.10
3316 5670 8.463930 ACAATTCACAGATTTGGAAAAGTCTA 57.536 30.769 6.59 0.00 30.25 2.59
3364 5718 1.527433 GAAGTTGAACTGGGCTGGCC 61.527 60.000 14.23 14.23 0.00 5.36
3365 5719 0.823356 TGAAGTTGAACTGGGCTGGC 60.823 55.000 0.00 0.00 0.00 4.85
3366 5720 0.954452 GTGAAGTTGAACTGGGCTGG 59.046 55.000 0.00 0.00 0.00 4.85
3367 5721 1.972872 AGTGAAGTTGAACTGGGCTG 58.027 50.000 0.00 0.00 0.00 4.85
3368 5722 2.736670 AAGTGAAGTTGAACTGGGCT 57.263 45.000 0.00 0.00 0.00 5.19
3369 5723 3.630312 TGTAAAGTGAAGTTGAACTGGGC 59.370 43.478 0.00 0.00 0.00 5.36
3370 5724 5.828299 TTGTAAAGTGAAGTTGAACTGGG 57.172 39.130 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.