Multiple sequence alignment - TraesCS7B01G220500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G220500 chr7B 100.000 8458 0 0 1 8458 411741667 411750124 0.000000e+00 15620.0
1 TraesCS7B01G220500 chr7A 94.514 4739 173 31 3769 8458 460112904 460117604 0.000000e+00 7230.0
2 TraesCS7B01G220500 chr7A 95.742 2748 63 16 314 3046 460109687 460112395 0.000000e+00 4377.0
3 TraesCS7B01G220500 chr7A 94.776 536 11 4 3088 3611 460112377 460112907 0.000000e+00 819.0
4 TraesCS7B01G220500 chr7A 90.909 264 23 1 55 318 460109153 460109415 3.760000e-93 353.0
5 TraesCS7B01G220500 chr7D 95.547 3997 109 28 4500 8458 402145893 402149858 0.000000e+00 6331.0
6 TraesCS7B01G220500 chr7D 94.424 3031 80 23 55 3046 402141736 402144716 0.000000e+00 4578.0
7 TraesCS7B01G220500 chr7D 88.694 1141 110 12 4403 5536 383984239 383983111 0.000000e+00 1375.0
8 TraesCS7B01G220500 chr7D 97.001 667 12 3 3769 4430 402145229 402145892 0.000000e+00 1114.0
9 TraesCS7B01G220500 chr7D 96.075 535 10 2 3088 3611 402144698 402145232 0.000000e+00 861.0
10 TraesCS7B01G220500 chr3B 87.927 1143 118 13 4403 5536 16695381 16694250 0.000000e+00 1328.0
11 TraesCS7B01G220500 chr3B 87.873 1138 117 15 4402 5529 78632382 78631256 0.000000e+00 1317.0
12 TraesCS7B01G220500 chr3D 88.024 1144 97 18 4406 5534 597283855 597284973 0.000000e+00 1317.0
13 TraesCS7B01G220500 chr2D 87.852 1136 121 11 4405 5534 317863466 317862342 0.000000e+00 1317.0
14 TraesCS7B01G220500 chr2D 94.915 177 6 2 3607 3783 27073491 27073318 3.010000e-69 274.0
15 TraesCS7B01G220500 chr2D 87.097 62 6 1 3610 3669 621263983 621264044 1.520000e-07 69.4
16 TraesCS7B01G220500 chr1B 87.467 1141 115 16 4400 5530 50017317 50018439 0.000000e+00 1290.0
17 TraesCS7B01G220500 chr2A 89.834 905 60 17 4634 5534 605245726 605244850 0.000000e+00 1133.0
18 TraesCS7B01G220500 chr2A 88.172 558 60 6 4405 4958 22445822 22445267 0.000000e+00 660.0
19 TraesCS7B01G220500 chr2A 87.906 339 32 3 5199 5537 22444578 22444249 2.860000e-104 390.0
20 TraesCS7B01G220500 chr2A 98.160 163 2 1 3610 3772 189020837 189020998 5.000000e-72 283.0
21 TraesCS7B01G220500 chr2A 89.655 58 4 1 4406 4463 605247756 605247701 1.180000e-08 73.1
22 TraesCS7B01G220500 chr1D 86.571 700 70 10 4836 5533 470415556 470416233 0.000000e+00 750.0
23 TraesCS7B01G220500 chrUn 98.786 412 5 0 2304 2715 477531839 477532250 0.000000e+00 734.0
24 TraesCS7B01G220500 chr6B 88.017 484 48 9 4404 4880 670031309 670031789 1.590000e-156 564.0
25 TraesCS7B01G220500 chr5B 89.143 350 29 6 5185 5534 304295339 304295679 2.180000e-115 427.0
26 TraesCS7B01G220500 chr5B 96.512 172 5 1 3604 3775 254154651 254154481 5.000000e-72 283.0
27 TraesCS7B01G220500 chr5D 98.182 165 2 1 3610 3774 151671709 151671546 3.860000e-73 287.0
28 TraesCS7B01G220500 chr2B 98.171 164 2 1 3609 3772 616962953 616962791 1.390000e-72 285.0
29 TraesCS7B01G220500 chr1A 97.576 165 3 1 3608 3772 254349078 254348915 1.800000e-71 281.0
30 TraesCS7B01G220500 chr1A 97.006 167 4 1 3608 3774 580666094 580665929 6.460000e-71 279.0
31 TraesCS7B01G220500 chr4B 95.954 173 6 1 3600 3772 586317313 586317484 6.460000e-71 279.0
32 TraesCS7B01G220500 chr4D 95.455 176 5 3 3610 3785 484111925 484111753 2.330000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G220500 chr7B 411741667 411750124 8457 False 15620.00 15620 100.00000 1 8458 1 chr7B.!!$F1 8457
1 TraesCS7B01G220500 chr7A 460109153 460117604 8451 False 3194.75 7230 93.98525 55 8458 4 chr7A.!!$F1 8403
2 TraesCS7B01G220500 chr7D 402141736 402149858 8122 False 3221.00 6331 95.76175 55 8458 4 chr7D.!!$F1 8403
3 TraesCS7B01G220500 chr7D 383983111 383984239 1128 True 1375.00 1375 88.69400 4403 5536 1 chr7D.!!$R1 1133
4 TraesCS7B01G220500 chr3B 16694250 16695381 1131 True 1328.00 1328 87.92700 4403 5536 1 chr3B.!!$R1 1133
5 TraesCS7B01G220500 chr3B 78631256 78632382 1126 True 1317.00 1317 87.87300 4402 5529 1 chr3B.!!$R2 1127
6 TraesCS7B01G220500 chr3D 597283855 597284973 1118 False 1317.00 1317 88.02400 4406 5534 1 chr3D.!!$F1 1128
7 TraesCS7B01G220500 chr2D 317862342 317863466 1124 True 1317.00 1317 87.85200 4405 5534 1 chr2D.!!$R2 1129
8 TraesCS7B01G220500 chr1B 50017317 50018439 1122 False 1290.00 1290 87.46700 4400 5530 1 chr1B.!!$F1 1130
9 TraesCS7B01G220500 chr2A 605244850 605247756 2906 True 603.05 1133 89.74450 4406 5534 2 chr2A.!!$R2 1128
10 TraesCS7B01G220500 chr2A 22444249 22445822 1573 True 525.00 660 88.03900 4405 5537 2 chr2A.!!$R1 1132
11 TraesCS7B01G220500 chr1D 470415556 470416233 677 False 750.00 750 86.57100 4836 5533 1 chr1D.!!$F1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 1039 0.033504 TTCCACTCGAGTGCTCCAAC 59.966 55.000 35.09 0.00 44.34 3.77 F
779 1090 0.599558 CCCAGTTCCAGTCGTCGTTA 59.400 55.000 0.00 0.00 0.00 3.18 F
1793 2104 0.464036 TAGAGCCCAATACGCTGTGG 59.536 55.000 0.00 0.00 36.48 4.17 F
3624 3966 1.076677 TGAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36 F
3667 4009 0.539518 TCACCATGGACCACATACGG 59.460 55.000 21.47 0.00 37.84 4.02 F
3668 4010 0.539518 CACCATGGACCACATACGGA 59.460 55.000 21.47 0.00 37.84 4.69 F
5131 7663 0.591741 GATGACGATGGTCCGACGAC 60.592 60.000 13.14 8.32 42.73 4.34 F
5259 7879 1.006832 GCGGTATGCGTTGATGTCTT 58.993 50.000 0.00 0.00 0.00 3.01 F
6086 8722 1.140052 TCTGAAACTGGACGCAGGAAA 59.860 47.619 0.00 0.00 0.00 3.13 F
6738 9376 1.096386 CCTCTCAGATTGCTGCTGCC 61.096 60.000 13.47 0.00 42.01 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2095 0.330604 AGGAGTAGGACCACAGCGTA 59.669 55.000 0.00 0.0 0.00 4.42 R
1840 2151 0.390340 GCACAGAATCAGCAGTCCGA 60.390 55.000 0.00 0.0 0.00 4.55 R
3648 3990 0.539518 CCGTATGTGGTCCATGGTGA 59.460 55.000 12.58 0.0 34.86 4.02 R
5263 7883 0.110486 TCCTTTCCCAGCACCAACTC 59.890 55.000 0.00 0.0 0.00 3.01 R
5269 7889 0.670854 GTCGAGTCCTTTCCCAGCAC 60.671 60.000 0.00 0.0 0.00 4.40 R
5475 8108 1.134037 TGGCCTACACTCGTTTTTGGT 60.134 47.619 3.32 0.0 0.00 3.67 R
6502 9140 0.318869 TGCTGCAAAGCCATGAAACG 60.319 50.000 0.00 0.0 0.00 3.60 R
6629 9267 0.871722 CATCAAAGGAACACGGCGAA 59.128 50.000 16.62 0.0 0.00 4.70 R
7307 9945 1.200519 TCTCCTCCATGTTTACCCCG 58.799 55.000 0.00 0.0 0.00 5.73 R
8248 10937 0.399806 AGAATGGAGGAGAGGGAGGC 60.400 60.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.510549 CTCCGTCCCATAATATGAAAATGTT 57.489 36.000 1.10 0.00 0.00 2.71
25 26 7.889873 TCCGTCCCATAATATGAAAATGTTT 57.110 32.000 1.10 0.00 0.00 2.83
26 27 8.299990 TCCGTCCCATAATATGAAAATGTTTT 57.700 30.769 1.10 0.00 0.00 2.43
27 28 8.754080 TCCGTCCCATAATATGAAAATGTTTTT 58.246 29.630 1.10 0.00 0.00 1.94
53 54 7.817418 ACACAAAGAAAGTAATTAAGAGCCA 57.183 32.000 0.00 0.00 0.00 4.75
58 59 8.703336 CAAAGAAAGTAATTAAGAGCCAAAAGC 58.297 33.333 0.00 0.00 44.25 3.51
76 77 1.964448 CTAGCACACGGACTGGACA 59.036 57.895 0.00 0.00 0.00 4.02
110 111 4.525912 AATTGCATCCTTGAACCAACTC 57.474 40.909 0.00 0.00 0.00 3.01
115 116 3.376546 GCATCCTTGAACCAACTCTGATC 59.623 47.826 0.00 0.00 0.00 2.92
121 122 5.279910 CCTTGAACCAACTCTGATCTCTCTT 60.280 44.000 0.00 0.00 0.00 2.85
143 144 5.852282 TGCTATATACAGCTTGTCACTCA 57.148 39.130 4.35 0.00 42.30 3.41
152 153 5.128919 ACAGCTTGTCACTCATTTTCTTCT 58.871 37.500 0.00 0.00 0.00 2.85
153 154 5.008415 ACAGCTTGTCACTCATTTTCTTCTG 59.992 40.000 0.00 0.00 0.00 3.02
160 164 6.162777 GTCACTCATTTTCTTCTGAGCTACT 58.837 40.000 0.00 0.00 42.12 2.57
195 199 2.168496 TCTCTAACCACACCCTCTTCG 58.832 52.381 0.00 0.00 0.00 3.79
198 202 2.162338 TAACCACACCCTCTTCGCCG 62.162 60.000 0.00 0.00 0.00 6.46
334 614 7.886629 TGGCTAAGCAATTGAATAGAGATTT 57.113 32.000 10.34 0.00 0.00 2.17
335 615 8.978874 TGGCTAAGCAATTGAATAGAGATTTA 57.021 30.769 10.34 0.00 0.00 1.40
336 616 9.578576 TGGCTAAGCAATTGAATAGAGATTTAT 57.421 29.630 10.34 0.00 0.00 1.40
347 627 9.973661 TTGAATAGAGATTTATTTGAGTTCCCA 57.026 29.630 0.00 0.00 0.00 4.37
372 654 1.981256 TCCAAAAACTGTCTGCCCTC 58.019 50.000 0.00 0.00 0.00 4.30
380 662 2.107141 GTCTGCCCTCGATTCCCG 59.893 66.667 0.00 0.00 40.25 5.14
395 677 6.919721 TCGATTCCCGATTTCTTTTCATTTT 58.080 32.000 0.00 0.00 43.23 1.82
583 894 1.484038 CACTCAGGAAGGAGAGAGGG 58.516 60.000 0.00 0.00 38.30 4.30
584 895 1.006519 CACTCAGGAAGGAGAGAGGGA 59.993 57.143 0.00 0.00 38.30 4.20
608 919 3.237741 GAGGGAGATCTGCGGGGG 61.238 72.222 8.26 0.00 0.00 5.40
728 1039 0.033504 TTCCACTCGAGTGCTCCAAC 59.966 55.000 35.09 0.00 44.34 3.77
779 1090 0.599558 CCCAGTTCCAGTCGTCGTTA 59.400 55.000 0.00 0.00 0.00 3.18
833 1144 4.021925 GTTGCTGGAGCGGAGGGT 62.022 66.667 0.00 0.00 45.83 4.34
1600 1911 4.949856 TGTTTCTCTTTGCTCAAGACCTTT 59.050 37.500 0.00 0.00 36.51 3.11
1604 1915 6.808008 TCTCTTTGCTCAAGACCTTTATTG 57.192 37.500 0.00 0.00 36.51 1.90
1750 2061 7.361542 CCCATAAGCTTTGGAATATCATTCTCG 60.362 40.741 21.94 4.35 36.26 4.04
1753 2064 6.798315 AGCTTTGGAATATCATTCTCGATG 57.202 37.500 0.00 0.00 37.08 3.84
1783 2094 5.183140 GTGCAGTTAGAAAAATAGAGCCCAA 59.817 40.000 0.00 0.00 0.00 4.12
1784 2095 5.951747 TGCAGTTAGAAAAATAGAGCCCAAT 59.048 36.000 0.00 0.00 0.00 3.16
1785 2096 7.067008 GTGCAGTTAGAAAAATAGAGCCCAATA 59.933 37.037 0.00 0.00 0.00 1.90
1786 2097 7.067008 TGCAGTTAGAAAAATAGAGCCCAATAC 59.933 37.037 0.00 0.00 0.00 1.89
1787 2098 7.630924 CAGTTAGAAAAATAGAGCCCAATACG 58.369 38.462 0.00 0.00 0.00 3.06
1788 2099 6.260271 AGTTAGAAAAATAGAGCCCAATACGC 59.740 38.462 0.00 0.00 0.00 4.42
1789 2100 4.781934 AGAAAAATAGAGCCCAATACGCT 58.218 39.130 0.00 0.00 39.95 5.07
1790 2101 4.576463 AGAAAAATAGAGCCCAATACGCTG 59.424 41.667 0.00 0.00 36.48 5.18
1791 2102 3.560636 AAATAGAGCCCAATACGCTGT 57.439 42.857 0.00 0.00 36.48 4.40
1792 2103 2.533266 ATAGAGCCCAATACGCTGTG 57.467 50.000 0.00 0.00 36.48 3.66
1793 2104 0.464036 TAGAGCCCAATACGCTGTGG 59.536 55.000 0.00 0.00 36.48 4.17
1799 2110 1.472728 CCCAATACGCTGTGGTCCTAC 60.473 57.143 0.00 0.00 32.60 3.18
1804 2115 1.251527 ACGCTGTGGTCCTACTCCTG 61.252 60.000 0.00 0.00 0.00 3.86
1820 2131 7.344612 TCCTACTCCTGTAAAGCAATCTGATTA 59.655 37.037 1.98 0.00 0.00 1.75
1862 2190 2.482664 CGGACTGCTGATTCTGTGCTAT 60.483 50.000 0.00 0.00 0.00 2.97
1867 2195 4.115516 CTGCTGATTCTGTGCTATTACGT 58.884 43.478 0.00 0.00 0.00 3.57
1892 2220 4.929819 TTCTCACCCTTGCCTTTTAAAC 57.070 40.909 0.00 0.00 0.00 2.01
1989 2317 6.142320 CACTTAAGAAAGTTCGATTTGCCAAC 59.858 38.462 10.09 0.00 43.60 3.77
2482 2811 4.434593 CGTGTTGTAACTTTATGGTACCGC 60.435 45.833 7.57 0.00 38.04 5.68
2524 2853 3.104512 TGCTACTAACTATGGTGCCACT 58.895 45.455 0.00 0.00 0.00 4.00
2632 2961 4.261801 ACTACTGCCGCAGTCATAATTTT 58.738 39.130 28.95 4.46 41.21 1.82
2739 3068 9.410556 GTCGTTAACTTTATGACACTTAAGGTA 57.589 33.333 7.53 0.00 0.00 3.08
2774 3103 5.820947 GTCTAAACTCTTTCAGGTGGAACAA 59.179 40.000 0.00 0.00 44.16 2.83
2849 3178 2.640346 TGAAGTTATCGCGTGCTACA 57.360 45.000 5.77 0.00 0.00 2.74
3025 3355 4.144297 GGCTGCCCTTACATTCATTGATA 58.856 43.478 7.66 0.00 0.00 2.15
3045 3375 9.690913 ATTGATACATTATATGGCTGCTGTATT 57.309 29.630 9.04 0.00 31.78 1.89
3046 3376 9.519191 TTGATACATTATATGGCTGCTGTATTT 57.481 29.630 9.04 0.00 31.78 1.40
3047 3377 9.519191 TGATACATTATATGGCTGCTGTATTTT 57.481 29.630 9.04 0.00 31.78 1.82
3073 3403 6.528537 TTTTGTGAATAATATGGCTGCTGT 57.471 33.333 0.00 0.00 0.00 4.40
3074 3404 7.637631 TTTTGTGAATAATATGGCTGCTGTA 57.362 32.000 0.00 0.00 0.00 2.74
3075 3405 7.822161 TTTGTGAATAATATGGCTGCTGTAT 57.178 32.000 0.00 0.00 0.00 2.29
3076 3406 7.822161 TTGTGAATAATATGGCTGCTGTATT 57.178 32.000 0.00 7.35 0.00 1.89
3077 3407 7.822161 TGTGAATAATATGGCTGCTGTATTT 57.178 32.000 12.66 0.76 0.00 1.40
3078 3408 8.236585 TGTGAATAATATGGCTGCTGTATTTT 57.763 30.769 12.66 5.54 0.00 1.82
3079 3409 8.694540 TGTGAATAATATGGCTGCTGTATTTTT 58.305 29.630 12.66 11.43 0.00 1.94
3100 3430 4.916983 TTTTGCGAATAATATGGCTGCT 57.083 36.364 0.00 0.00 0.00 4.24
3101 3431 3.902261 TTGCGAATAATATGGCTGCTG 57.098 42.857 0.00 0.00 0.00 4.41
3102 3432 2.849942 TGCGAATAATATGGCTGCTGT 58.150 42.857 0.00 0.00 0.00 4.40
3103 3433 4.001618 TGCGAATAATATGGCTGCTGTA 57.998 40.909 0.00 0.00 0.00 2.74
3104 3434 4.578871 TGCGAATAATATGGCTGCTGTAT 58.421 39.130 0.00 0.00 0.00 2.29
3283 3624 4.566488 CCTCTACTTTTCAGGGTTGCTGAT 60.566 45.833 0.00 0.00 0.00 2.90
3291 3632 2.036217 TCAGGGTTGCTGATTTTTGCTG 59.964 45.455 0.00 0.00 0.00 4.41
3478 3820 1.419012 CTCCCATCAGCCTAGATGCAA 59.581 52.381 0.00 0.00 43.15 4.08
3605 3947 6.764308 AAAGGACCATCAAGAATACATGTG 57.236 37.500 9.11 0.00 0.00 3.21
3607 3949 6.065976 AGGACCATCAAGAATACATGTGAA 57.934 37.500 9.11 0.00 0.00 3.18
3608 3950 6.118170 AGGACCATCAAGAATACATGTGAAG 58.882 40.000 9.11 0.00 0.00 3.02
3609 3951 5.882557 GGACCATCAAGAATACATGTGAAGT 59.117 40.000 9.11 0.00 0.00 3.01
3610 3952 7.047891 GGACCATCAAGAATACATGTGAAGTA 58.952 38.462 9.11 0.00 0.00 2.24
3611 3953 7.011482 GGACCATCAAGAATACATGTGAAGTAC 59.989 40.741 9.11 0.00 0.00 2.73
3612 3954 7.624549 ACCATCAAGAATACATGTGAAGTACT 58.375 34.615 9.11 0.00 0.00 2.73
3613 3955 7.766278 ACCATCAAGAATACATGTGAAGTACTC 59.234 37.037 9.11 0.00 0.00 2.59
3614 3956 7.225538 CCATCAAGAATACATGTGAAGTACTCC 59.774 40.741 9.11 0.00 0.00 3.85
3615 3957 6.640518 TCAAGAATACATGTGAAGTACTCCC 58.359 40.000 9.11 0.00 0.00 4.30
3616 3958 6.440647 TCAAGAATACATGTGAAGTACTCCCT 59.559 38.462 9.11 0.00 0.00 4.20
3617 3959 6.472686 AGAATACATGTGAAGTACTCCCTC 57.527 41.667 9.11 0.00 0.00 4.30
3618 3960 5.364157 AGAATACATGTGAAGTACTCCCTCC 59.636 44.000 9.11 0.00 0.00 4.30
3619 3961 1.825474 ACATGTGAAGTACTCCCTCCG 59.175 52.381 0.00 0.00 0.00 4.63
3620 3962 1.825474 CATGTGAAGTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
3621 3963 2.005370 TGTGAAGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
3622 3964 1.891150 TGTGAAGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
3623 3965 1.204231 GTGAAGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
3624 3966 1.076677 TGAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
3625 3967 2.309755 TGAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
3626 3968 3.245371 TGAAGTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
3627 3969 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3628 3970 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3629 3971 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3630 3972 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3631 3973 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3632 3974 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3633 3975 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3634 3976 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3635 3977 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3636 3978 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3637 3979 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3638 3980 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3639 3981 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3640 3982 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3655 3997 7.678947 AAGTCTTTGTAGAGATTTCACCATG 57.321 36.000 0.00 0.00 0.00 3.66
3656 3998 6.176183 AGTCTTTGTAGAGATTTCACCATGG 58.824 40.000 11.19 11.19 0.00 3.66
3657 3999 6.013379 AGTCTTTGTAGAGATTTCACCATGGA 60.013 38.462 21.47 0.00 0.00 3.41
3658 4000 6.092807 GTCTTTGTAGAGATTTCACCATGGAC 59.907 42.308 21.47 1.95 0.00 4.02
3659 4001 4.487714 TGTAGAGATTTCACCATGGACC 57.512 45.455 21.47 0.27 0.00 4.46
3660 4002 3.843619 TGTAGAGATTTCACCATGGACCA 59.156 43.478 21.47 0.00 0.00 4.02
3661 4003 3.356529 AGAGATTTCACCATGGACCAC 57.643 47.619 21.47 4.60 0.00 4.16
3662 4004 2.644299 AGAGATTTCACCATGGACCACA 59.356 45.455 21.47 0.00 0.00 4.17
3663 4005 3.267812 AGAGATTTCACCATGGACCACAT 59.732 43.478 21.47 3.22 41.57 3.21
3664 4006 4.474651 AGAGATTTCACCATGGACCACATA 59.525 41.667 21.47 0.00 37.84 2.29
3665 4007 4.526970 AGATTTCACCATGGACCACATAC 58.473 43.478 21.47 2.78 37.84 2.39
3666 4008 2.394930 TTCACCATGGACCACATACG 57.605 50.000 21.47 0.00 37.84 3.06
3667 4009 0.539518 TCACCATGGACCACATACGG 59.460 55.000 21.47 0.00 37.84 4.02
3668 4010 0.539518 CACCATGGACCACATACGGA 59.460 55.000 21.47 0.00 37.84 4.69
3669 4011 1.140852 CACCATGGACCACATACGGAT 59.859 52.381 21.47 0.00 37.84 4.18
3670 4012 1.140852 ACCATGGACCACATACGGATG 59.859 52.381 21.47 5.94 37.84 3.51
3672 4014 2.367241 CCATGGACCACATACGGATGTA 59.633 50.000 14.23 0.00 44.82 2.29
3673 4015 3.007940 CCATGGACCACATACGGATGTAT 59.992 47.826 14.23 4.48 44.82 2.29
3674 4016 4.245660 CATGGACCACATACGGATGTATC 58.754 47.826 14.23 13.80 44.82 2.24
3675 4017 3.572642 TGGACCACATACGGATGTATCT 58.427 45.455 14.23 0.00 44.82 1.98
3676 4018 4.732065 TGGACCACATACGGATGTATCTA 58.268 43.478 14.23 9.44 44.82 1.98
3677 4019 4.765339 TGGACCACATACGGATGTATCTAG 59.235 45.833 14.23 0.00 44.82 2.43
3678 4020 5.008331 GGACCACATACGGATGTATCTAGA 58.992 45.833 14.23 0.00 44.82 2.43
3679 4021 5.652891 GGACCACATACGGATGTATCTAGAT 59.347 44.000 14.23 10.73 44.82 1.98
3680 4022 6.404844 GGACCACATACGGATGTATCTAGATG 60.405 46.154 14.23 0.00 44.82 2.90
3681 4023 5.105716 ACCACATACGGATGTATCTAGATGC 60.106 44.000 14.23 14.54 44.82 3.91
3682 4024 5.105756 CCACATACGGATGTATCTAGATGCA 60.106 44.000 23.38 23.38 44.82 3.96
3683 4025 6.406288 CCACATACGGATGTATCTAGATGCAT 60.406 42.308 29.54 29.54 44.82 3.96
3684 4026 7.038048 CACATACGGATGTATCTAGATGCATT 58.962 38.462 29.66 19.73 44.82 3.56
3685 4027 7.547019 CACATACGGATGTATCTAGATGCATTT 59.453 37.037 29.66 21.00 44.82 2.32
3686 4028 8.097038 ACATACGGATGTATCTAGATGCATTTT 58.903 33.333 29.66 20.74 44.77 1.82
3687 4029 9.586435 CATACGGATGTATCTAGATGCATTTTA 57.414 33.333 29.66 21.80 42.77 1.52
3688 4030 9.809096 ATACGGATGTATCTAGATGCATTTTAG 57.191 33.333 29.66 22.88 42.77 1.85
3689 4031 7.896811 ACGGATGTATCTAGATGCATTTTAGA 58.103 34.615 29.66 18.53 42.77 2.10
3690 4032 8.031864 ACGGATGTATCTAGATGCATTTTAGAG 58.968 37.037 29.66 20.36 42.77 2.43
3691 4033 8.031864 CGGATGTATCTAGATGCATTTTAGAGT 58.968 37.037 29.66 12.13 42.77 3.24
3713 4055 9.323985 AGAGTATAGATTCACTCATTTTTGCTC 57.676 33.333 4.70 0.00 42.99 4.26
3714 4056 8.443953 AGTATAGATTCACTCATTTTTGCTCC 57.556 34.615 0.00 0.00 0.00 4.70
3715 4057 4.691860 AGATTCACTCATTTTTGCTCCG 57.308 40.909 0.00 0.00 0.00 4.63
3716 4058 4.074970 AGATTCACTCATTTTTGCTCCGT 58.925 39.130 0.00 0.00 0.00 4.69
3717 4059 5.245531 AGATTCACTCATTTTTGCTCCGTA 58.754 37.500 0.00 0.00 0.00 4.02
3718 4060 5.882557 AGATTCACTCATTTTTGCTCCGTAT 59.117 36.000 0.00 0.00 0.00 3.06
3719 4061 4.944962 TCACTCATTTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3720 4062 4.323417 TCACTCATTTTTGCTCCGTATGT 58.677 39.130 0.00 0.00 0.00 2.29
3721 4063 4.154015 TCACTCATTTTTGCTCCGTATGTG 59.846 41.667 0.00 0.00 0.00 3.21
3722 4064 3.440173 ACTCATTTTTGCTCCGTATGTGG 59.560 43.478 0.00 0.00 0.00 4.17
3723 4065 3.417101 TCATTTTTGCTCCGTATGTGGT 58.583 40.909 0.00 0.00 0.00 4.16
3724 4066 3.438781 TCATTTTTGCTCCGTATGTGGTC 59.561 43.478 0.00 0.00 0.00 4.02
3725 4067 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
3726 4068 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
3727 4069 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
3728 4070 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
3729 4071 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
3730 4072 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
3731 4073 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
3732 4074 2.035961 CTCCGTATGTGGTCCATAGTGG 59.964 54.545 0.00 0.00 36.71 4.00
3733 4075 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
3762 4104 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
3763 4105 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3764 4106 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
3765 4107 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
3766 4108 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
3767 4109 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3784 4126 3.433598 GGAGGGAGTATAAGTTGCATGCA 60.434 47.826 18.46 18.46 0.00 3.96
3785 4127 4.392940 GAGGGAGTATAAGTTGCATGCAT 58.607 43.478 23.37 9.62 0.00 3.96
3786 4128 4.139786 AGGGAGTATAAGTTGCATGCATG 58.860 43.478 23.37 22.70 0.00 4.06
3905 4249 6.824704 TGTACAATCAATCAAGCAGATCATGA 59.175 34.615 0.00 0.00 35.39 3.07
3972 4319 0.969894 CCTCCAAGTTCACCTCGTCT 59.030 55.000 0.00 0.00 0.00 4.18
4049 4396 1.194781 TTGAGCTCCCAGTCCCTGTC 61.195 60.000 12.15 0.00 0.00 3.51
4094 4441 0.839853 ACTCTTTGAGCTGGAGGGCT 60.840 55.000 0.00 0.00 46.11 5.19
4099 4446 3.005539 GAGCTGGAGGGCTGTCCA 61.006 66.667 0.00 8.55 44.82 4.02
4151 4498 1.039856 GTGCTTTGGTGGGAACATGT 58.960 50.000 0.00 0.00 46.14 3.21
4446 4839 6.980051 AGGATTAACGCCTAGTTTTAACAG 57.020 37.500 0.00 0.00 43.86 3.16
4529 4928 5.838529 AGTATACACAAAACCTTGTTTGGC 58.161 37.500 5.50 0.00 43.45 4.52
4548 4947 9.553064 TGTTTGGCTGATAAAACATGTTTAAAT 57.447 25.926 23.53 18.88 40.41 1.40
4598 5001 1.144969 GATGAACGCGTCCAGTTTCA 58.855 50.000 14.44 12.41 31.14 2.69
4619 5030 1.433879 GCTGGCACTCTCGTCGTAT 59.566 57.895 0.00 0.00 0.00 3.06
4729 6888 4.643387 GGGCAGCGGTGAAGGTGT 62.643 66.667 20.69 0.00 41.28 4.16
4817 6976 7.543172 TGTTAACAGCCAAATTACTACTAGTCG 59.457 37.037 3.59 0.00 0.00 4.18
4923 7084 5.156355 CCAATCATTCAAGAACAAGAACGG 58.844 41.667 0.00 0.00 0.00 4.44
4931 7092 2.699954 AGAACAAGAACGGGCATACAG 58.300 47.619 0.00 0.00 0.00 2.74
4934 7095 0.748005 CAAGAACGGGCATACAGGGG 60.748 60.000 0.00 0.00 0.00 4.79
5033 7565 1.751924 GCTCGAGTAGGATCAGTGGTT 59.248 52.381 15.13 0.00 0.00 3.67
5131 7663 0.591741 GATGACGATGGTCCGACGAC 60.592 60.000 13.14 8.32 42.73 4.34
5258 7878 2.677971 GCGGTATGCGTTGATGTCT 58.322 52.632 0.00 0.00 0.00 3.41
5259 7879 1.006832 GCGGTATGCGTTGATGTCTT 58.993 50.000 0.00 0.00 0.00 3.01
5260 7880 1.267532 GCGGTATGCGTTGATGTCTTG 60.268 52.381 0.00 0.00 0.00 3.02
5261 7881 2.267426 CGGTATGCGTTGATGTCTTGA 58.733 47.619 0.00 0.00 0.00 3.02
5262 7882 2.866156 CGGTATGCGTTGATGTCTTGAT 59.134 45.455 0.00 0.00 0.00 2.57
5263 7883 3.302675 CGGTATGCGTTGATGTCTTGATG 60.303 47.826 0.00 0.00 0.00 3.07
5269 7889 3.425359 GCGTTGATGTCTTGATGAGTTGG 60.425 47.826 0.00 0.00 0.00 3.77
5390 8022 9.389570 ACGTCTAATTTTCGTTTTTCCATAAAG 57.610 29.630 0.00 0.00 34.07 1.85
5557 8191 5.582689 AAAAGTAATGGCAGGATACAAGC 57.417 39.130 9.60 0.00 41.41 4.01
5774 8410 4.342378 GCCTCTGTATATCTGAAGTGACCA 59.658 45.833 0.00 0.00 0.00 4.02
5809 8445 7.959175 TCTGGTTTGTAATCTGTACTTGTACT 58.041 34.615 11.53 0.00 0.00 2.73
5981 8617 3.333029 TCTGCAATTTCGACAGATGGA 57.667 42.857 0.00 0.00 35.58 3.41
6086 8722 1.140052 TCTGAAACTGGACGCAGGAAA 59.860 47.619 0.00 0.00 0.00 3.13
6154 8792 9.026074 GCAGAATTAATCCGATCTTAGTATAGC 57.974 37.037 0.00 0.00 0.00 2.97
6370 9008 8.915036 TGTTTTATTGTAACCAACTAACCATGT 58.085 29.630 0.00 0.00 32.26 3.21
6502 9140 8.973378 CCGTTTCATATTACTCAAATCTCTCTC 58.027 37.037 0.00 0.00 0.00 3.20
6629 9267 5.023452 TCTGGTAGTAGACAATGGTCATGT 58.977 41.667 2.34 0.00 46.80 3.21
6702 9340 3.159213 TCAAGTGGCACAGATCCAAAT 57.841 42.857 21.41 0.00 41.80 2.32
6704 9342 1.180029 AGTGGCACAGATCCAAATGC 58.820 50.000 21.41 0.00 41.80 3.56
6738 9376 1.096386 CCTCTCAGATTGCTGCTGCC 61.096 60.000 13.47 0.00 42.01 4.85
6757 9395 2.546795 GCCGAGATGTCTAACCCATCTG 60.547 54.545 7.58 1.62 46.84 2.90
6858 9496 2.159421 TCGGTCGAGTTCAAGATACAGC 60.159 50.000 0.00 0.00 0.00 4.40
7119 9757 8.474025 TCCGAAAAATCCATACATTAGCATTTT 58.526 29.630 0.00 0.00 0.00 1.82
7244 9882 7.279536 ACATGCTGATAATTTCTCGCCTATATG 59.720 37.037 0.00 0.00 0.00 1.78
7307 9945 0.466922 CAGGACCATTGATGCCTCCC 60.467 60.000 0.00 0.00 0.00 4.30
7322 9960 0.180406 CTCCCGGGGTAAACATGGAG 59.820 60.000 23.50 1.70 34.02 3.86
7355 9993 2.125552 CACGAGCGGCAGATCCAA 60.126 61.111 1.45 0.00 34.01 3.53
7608 10246 1.150536 GACTGGTGGTTCCTGGCAA 59.849 57.895 0.00 0.00 41.99 4.52
7609 10247 0.890996 GACTGGTGGTTCCTGGCAAG 60.891 60.000 0.00 0.00 41.99 4.01
7610 10248 1.352622 ACTGGTGGTTCCTGGCAAGA 61.353 55.000 0.00 0.00 39.12 3.02
7611 10249 0.178992 CTGGTGGTTCCTGGCAAGAA 60.179 55.000 0.00 0.00 37.07 2.52
7612 10250 0.178992 TGGTGGTTCCTGGCAAGAAG 60.179 55.000 0.00 0.00 37.07 2.85
7843 10486 1.133482 CCTCTCTCTCTCTCCCTTCCC 60.133 61.905 0.00 0.00 0.00 3.97
7846 10489 2.657459 TCTCTCTCTCTCCCTTCCCTTT 59.343 50.000 0.00 0.00 0.00 3.11
7847 10490 3.031013 CTCTCTCTCTCCCTTCCCTTTC 58.969 54.545 0.00 0.00 0.00 2.62
7848 10491 2.383683 TCTCTCTCTCCCTTCCCTTTCA 59.616 50.000 0.00 0.00 0.00 2.69
7851 10510 3.777522 TCTCTCTCCCTTCCCTTTCATTC 59.222 47.826 0.00 0.00 0.00 2.67
7852 10514 2.846827 TCTCTCCCTTCCCTTTCATTCC 59.153 50.000 0.00 0.00 0.00 3.01
7855 10517 3.597868 TCTCCCTTCCCTTTCATTCCAAT 59.402 43.478 0.00 0.00 0.00 3.16
7857 10519 4.867086 TCCCTTCCCTTTCATTCCAATAC 58.133 43.478 0.00 0.00 0.00 1.89
7860 10522 5.662657 CCCTTCCCTTTCATTCCAATACAAT 59.337 40.000 0.00 0.00 0.00 2.71
7861 10523 6.183360 CCCTTCCCTTTCATTCCAATACAATC 60.183 42.308 0.00 0.00 0.00 2.67
7867 10529 8.139989 CCCTTTCATTCCAATACAATCTCAATC 58.860 37.037 0.00 0.00 0.00 2.67
7868 10530 8.910944 CCTTTCATTCCAATACAATCTCAATCT 58.089 33.333 0.00 0.00 0.00 2.40
7889 10554 6.530913 TCTGAGAACGAAATCTTTCACAAG 57.469 37.500 3.77 0.00 37.01 3.16
7946 10611 0.806102 ATGCGAATCGGACGTTCCAG 60.806 55.000 4.35 0.00 35.91 3.86
7991 10656 0.774276 TGCACTCATGGTAAACCCCA 59.226 50.000 0.00 0.00 39.27 4.96
8120 10800 1.021390 CGTTTGATGCGCCCTTCTCT 61.021 55.000 4.18 0.00 0.00 3.10
8217 10906 2.203480 GCACCTGCCCAAGAACCA 60.203 61.111 0.00 0.00 34.31 3.67
8220 10909 2.391130 ACCTGCCCAAGAACCACCA 61.391 57.895 0.00 0.00 0.00 4.17
8221 10910 1.903404 CCTGCCCAAGAACCACCAC 60.903 63.158 0.00 0.00 0.00 4.16
8222 10911 1.152777 CTGCCCAAGAACCACCACA 60.153 57.895 0.00 0.00 0.00 4.17
8247 10936 3.839432 GCCTCGTCCTTCTCCCCG 61.839 72.222 0.00 0.00 0.00 5.73
8248 10937 3.148279 CCTCGTCCTTCTCCCCGG 61.148 72.222 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.510549 AACATTTTCATATTATGGGACGGAG 57.489 36.000 3.89 0.00 0.00 4.63
1 2 7.889873 AAACATTTTCATATTATGGGACGGA 57.110 32.000 3.89 0.00 0.00 4.69
2 3 8.940768 AAAAACATTTTCATATTATGGGACGG 57.059 30.769 3.89 0.00 0.00 4.79
27 28 9.344772 TGGCTCTTAATTACTTTCTTTGTGTTA 57.655 29.630 0.00 0.00 0.00 2.41
28 29 8.232913 TGGCTCTTAATTACTTTCTTTGTGTT 57.767 30.769 0.00 0.00 0.00 3.32
29 30 7.817418 TGGCTCTTAATTACTTTCTTTGTGT 57.183 32.000 0.00 0.00 0.00 3.72
30 31 9.528018 TTTTGGCTCTTAATTACTTTCTTTGTG 57.472 29.630 0.00 0.00 0.00 3.33
31 32 9.750125 CTTTTGGCTCTTAATTACTTTCTTTGT 57.250 29.630 0.00 0.00 0.00 2.83
32 33 8.703336 GCTTTTGGCTCTTAATTACTTTCTTTG 58.297 33.333 0.00 0.00 38.06 2.77
33 34 8.818141 GCTTTTGGCTCTTAATTACTTTCTTT 57.182 30.769 0.00 0.00 38.06 2.52
50 51 1.210155 CCGTGTGCTAGCTTTTGGC 59.790 57.895 17.23 0.13 42.19 4.52
51 52 0.517316 GTCCGTGTGCTAGCTTTTGG 59.483 55.000 17.23 12.68 0.00 3.28
52 53 1.195448 CAGTCCGTGTGCTAGCTTTTG 59.805 52.381 17.23 3.51 0.00 2.44
53 54 1.512926 CAGTCCGTGTGCTAGCTTTT 58.487 50.000 17.23 0.00 0.00 2.27
58 59 0.532573 ATGTCCAGTCCGTGTGCTAG 59.467 55.000 0.00 0.00 0.00 3.42
66 67 0.950836 TTGTTGCAATGTCCAGTCCG 59.049 50.000 0.59 0.00 0.00 4.79
94 95 4.841422 AGATCAGAGTTGGTTCAAGGATG 58.159 43.478 0.00 0.00 0.00 3.51
96 97 4.163427 AGAGATCAGAGTTGGTTCAAGGA 58.837 43.478 0.00 0.00 0.00 3.36
110 111 7.395190 AGCTGTATATAGCAAGAGAGATCAG 57.605 40.000 21.77 0.00 46.07 2.90
115 116 6.640499 GTGACAAGCTGTATATAGCAAGAGAG 59.360 42.308 21.77 8.27 46.07 3.20
121 122 5.852282 TGAGTGACAAGCTGTATATAGCA 57.148 39.130 21.77 0.00 46.07 3.49
186 190 2.036890 ACCTACGGCGAAGAGGGT 59.963 61.111 23.69 16.10 34.41 4.34
198 202 4.100707 TGAATAGCACACGTACACCTAC 57.899 45.455 0.00 0.00 0.00 3.18
334 614 7.847711 TTTGGAAAATCTGGGAACTCAAATA 57.152 32.000 0.00 0.00 0.00 1.40
335 615 6.745794 TTTGGAAAATCTGGGAACTCAAAT 57.254 33.333 0.00 0.00 0.00 2.32
336 616 6.552445 TTTTGGAAAATCTGGGAACTCAAA 57.448 33.333 0.00 0.00 0.00 2.69
337 617 6.156083 AGTTTTTGGAAAATCTGGGAACTCAA 59.844 34.615 0.00 0.00 0.00 3.02
338 618 5.660864 AGTTTTTGGAAAATCTGGGAACTCA 59.339 36.000 0.00 0.00 0.00 3.41
344 624 5.291971 CAGACAGTTTTTGGAAAATCTGGG 58.708 41.667 19.71 10.17 44.27 4.45
347 627 4.202253 GGGCAGACAGTTTTTGGAAAATCT 60.202 41.667 0.00 0.00 0.00 2.40
372 654 7.581011 AAAAATGAAAAGAAATCGGGAATCG 57.419 32.000 0.00 0.00 40.90 3.34
423 705 0.099082 CAGCGAGAGGGAGACGTTAC 59.901 60.000 0.00 0.00 0.00 2.50
486 797 3.569135 TCCCTTCCCTTCTCTTCTCTT 57.431 47.619 0.00 0.00 0.00 2.85
487 798 3.449918 CTTCCCTTCCCTTCTCTTCTCT 58.550 50.000 0.00 0.00 0.00 3.10
488 799 2.093181 GCTTCCCTTCCCTTCTCTTCTC 60.093 54.545 0.00 0.00 0.00 2.87
489 800 1.912731 GCTTCCCTTCCCTTCTCTTCT 59.087 52.381 0.00 0.00 0.00 2.85
490 801 1.630878 TGCTTCCCTTCCCTTCTCTTC 59.369 52.381 0.00 0.00 0.00 2.87
583 894 0.178935 CAGATCTCCCTCCCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
584 895 1.945447 CAGATCTCCCTCCCTCCCT 59.055 63.158 0.00 0.00 0.00 4.20
728 1039 1.064060 GCAACGGAAATCGGGATCTTG 59.936 52.381 0.00 0.00 44.45 3.02
833 1144 1.984570 CGGGAGCAGGAGGAAGTCA 60.985 63.158 0.00 0.00 0.00 3.41
844 1155 3.695606 GGCAGACACTCGGGAGCA 61.696 66.667 0.00 0.00 0.00 4.26
1245 1556 2.048222 ACCACTGCATCGACCACG 60.048 61.111 0.00 0.00 41.26 4.94
1305 1616 1.918293 AACCGCCCTCTCCACATCA 60.918 57.895 0.00 0.00 0.00 3.07
1360 1671 1.542492 CTTGGTTCTTGCTCTGCCAT 58.458 50.000 0.00 0.00 0.00 4.40
1467 1778 2.526873 ACCTCCGTGAGCCACCTT 60.527 61.111 0.50 0.00 0.00 3.50
1588 1899 2.446435 TGGCCAATAAAGGTCTTGAGC 58.554 47.619 0.61 0.00 33.35 4.26
1589 1900 4.530875 AGATGGCCAATAAAGGTCTTGAG 58.469 43.478 10.96 0.00 33.35 3.02
1600 1911 7.013559 CACAATTCAGAACATAGATGGCCAATA 59.986 37.037 10.96 6.50 0.00 1.90
1604 1915 4.641989 ACACAATTCAGAACATAGATGGCC 59.358 41.667 0.00 0.00 0.00 5.36
1750 2061 2.363788 TCTAACTGCACCACGACATC 57.636 50.000 0.00 0.00 0.00 3.06
1753 2064 3.955771 TTTTTCTAACTGCACCACGAC 57.044 42.857 0.00 0.00 0.00 4.34
1783 2094 1.063867 AGGAGTAGGACCACAGCGTAT 60.064 52.381 0.00 0.00 0.00 3.06
1784 2095 0.330604 AGGAGTAGGACCACAGCGTA 59.669 55.000 0.00 0.00 0.00 4.42
1785 2096 1.076906 AGGAGTAGGACCACAGCGT 59.923 57.895 0.00 0.00 0.00 5.07
1786 2097 1.251527 ACAGGAGTAGGACCACAGCG 61.252 60.000 0.00 0.00 0.00 5.18
1787 2098 1.848652 TACAGGAGTAGGACCACAGC 58.151 55.000 0.00 0.00 0.00 4.40
1788 2099 3.368531 GCTTTACAGGAGTAGGACCACAG 60.369 52.174 0.00 0.00 0.00 3.66
1789 2100 2.565834 GCTTTACAGGAGTAGGACCACA 59.434 50.000 0.00 0.00 0.00 4.17
1790 2101 2.565834 TGCTTTACAGGAGTAGGACCAC 59.434 50.000 0.00 0.00 0.00 4.16
1791 2102 2.897350 TGCTTTACAGGAGTAGGACCA 58.103 47.619 0.00 0.00 0.00 4.02
1792 2103 3.975168 TTGCTTTACAGGAGTAGGACC 57.025 47.619 0.00 0.00 0.00 4.46
1793 2104 5.105310 TCAGATTGCTTTACAGGAGTAGGAC 60.105 44.000 0.00 0.00 0.00 3.85
1827 2138 5.127194 TCAGCAGTCCGATAGTAGTTTCAAT 59.873 40.000 0.00 0.00 0.00 2.57
1828 2139 4.461431 TCAGCAGTCCGATAGTAGTTTCAA 59.539 41.667 0.00 0.00 0.00 2.69
1829 2140 4.014406 TCAGCAGTCCGATAGTAGTTTCA 58.986 43.478 0.00 0.00 0.00 2.69
1830 2141 4.634184 TCAGCAGTCCGATAGTAGTTTC 57.366 45.455 0.00 0.00 0.00 2.78
1831 2142 5.361285 AGAATCAGCAGTCCGATAGTAGTTT 59.639 40.000 0.00 0.00 0.00 2.66
1832 2143 4.890581 AGAATCAGCAGTCCGATAGTAGTT 59.109 41.667 0.00 0.00 0.00 2.24
1833 2144 4.277174 CAGAATCAGCAGTCCGATAGTAGT 59.723 45.833 0.00 0.00 0.00 2.73
1834 2145 4.277174 ACAGAATCAGCAGTCCGATAGTAG 59.723 45.833 0.00 0.00 0.00 2.57
1835 2146 4.036852 CACAGAATCAGCAGTCCGATAGTA 59.963 45.833 0.00 0.00 0.00 1.82
1836 2147 3.027412 ACAGAATCAGCAGTCCGATAGT 58.973 45.455 0.00 0.00 0.00 2.12
1837 2148 3.379240 CACAGAATCAGCAGTCCGATAG 58.621 50.000 0.00 0.00 0.00 2.08
1838 2149 2.481969 GCACAGAATCAGCAGTCCGATA 60.482 50.000 0.00 0.00 0.00 2.92
1839 2150 1.741732 GCACAGAATCAGCAGTCCGAT 60.742 52.381 0.00 0.00 0.00 4.18
1840 2151 0.390340 GCACAGAATCAGCAGTCCGA 60.390 55.000 0.00 0.00 0.00 4.55
1841 2152 0.390866 AGCACAGAATCAGCAGTCCG 60.391 55.000 0.00 0.00 0.00 4.79
1842 2153 2.680312 TAGCACAGAATCAGCAGTCC 57.320 50.000 0.00 0.00 0.00 3.85
1843 2154 4.208047 CGTAATAGCACAGAATCAGCAGTC 59.792 45.833 0.00 0.00 0.00 3.51
1892 2220 4.137543 GGTACCTTGCCCTATCTGAAATG 58.862 47.826 4.06 0.00 0.00 2.32
1989 2317 2.428530 TCGAACACTCTCAGGATCCATG 59.571 50.000 15.82 9.58 0.00 3.66
2498 2827 3.741388 GCACCATAGTTAGTAGCACCCAG 60.741 52.174 0.00 0.00 0.00 4.45
2524 2853 1.277273 CCAGCACTCCAGAGATCAACA 59.723 52.381 0.70 0.00 0.00 3.33
2564 2893 2.421952 GCATGATAGGCTTCCCTGACAA 60.422 50.000 0.00 0.00 42.90 3.18
2632 2961 4.142609 AGCAACAGTCTTGAGTTTGAGA 57.857 40.909 0.00 0.00 0.00 3.27
2774 3103 7.733402 ACAAAGCTTGAATATTTTGTGCAAT 57.267 28.000 0.00 0.00 40.93 3.56
2849 3178 3.888930 ACGGATGTTGTGGTTTGAAGATT 59.111 39.130 0.00 0.00 0.00 2.40
3049 3379 6.934056 ACAGCAGCCATATTATTCACAAAAA 58.066 32.000 0.00 0.00 0.00 1.94
3050 3380 6.528537 ACAGCAGCCATATTATTCACAAAA 57.471 33.333 0.00 0.00 0.00 2.44
3051 3381 7.822161 ATACAGCAGCCATATTATTCACAAA 57.178 32.000 0.00 0.00 0.00 2.83
3052 3382 7.822161 AATACAGCAGCCATATTATTCACAA 57.178 32.000 0.00 0.00 0.00 3.33
3053 3383 7.822161 AAATACAGCAGCCATATTATTCACA 57.178 32.000 0.00 0.00 0.00 3.58
3078 3408 5.042593 CAGCAGCCATATTATTCGCAAAAA 58.957 37.500 0.00 0.00 0.00 1.94
3079 3409 4.097741 ACAGCAGCCATATTATTCGCAAAA 59.902 37.500 0.00 0.00 0.00 2.44
3080 3410 3.631686 ACAGCAGCCATATTATTCGCAAA 59.368 39.130 0.00 0.00 0.00 3.68
3081 3411 3.213506 ACAGCAGCCATATTATTCGCAA 58.786 40.909 0.00 0.00 0.00 4.85
3082 3412 2.849942 ACAGCAGCCATATTATTCGCA 58.150 42.857 0.00 0.00 0.00 5.10
3083 3413 5.327091 CAATACAGCAGCCATATTATTCGC 58.673 41.667 0.00 0.00 0.00 4.70
3084 3414 5.327091 GCAATACAGCAGCCATATTATTCG 58.673 41.667 0.00 0.00 0.00 3.34
3095 3425 1.386533 ATGACAGGCAATACAGCAGC 58.613 50.000 0.00 0.00 35.83 5.25
3096 3426 4.877823 TCTTTATGACAGGCAATACAGCAG 59.122 41.667 0.00 0.00 35.83 4.24
3097 3427 4.842574 TCTTTATGACAGGCAATACAGCA 58.157 39.130 0.00 0.00 35.83 4.41
3098 3428 5.118990 TCTCTTTATGACAGGCAATACAGC 58.881 41.667 0.00 0.00 0.00 4.40
3099 3429 7.714377 AGATTCTCTTTATGACAGGCAATACAG 59.286 37.037 0.00 0.00 0.00 2.74
3100 3430 7.568349 AGATTCTCTTTATGACAGGCAATACA 58.432 34.615 0.00 0.00 0.00 2.29
3101 3431 9.717942 ATAGATTCTCTTTATGACAGGCAATAC 57.282 33.333 0.00 0.00 0.00 1.89
3102 3432 9.716531 CATAGATTCTCTTTATGACAGGCAATA 57.283 33.333 0.00 0.00 0.00 1.90
3103 3433 7.664731 CCATAGATTCTCTTTATGACAGGCAAT 59.335 37.037 0.00 0.00 0.00 3.56
3104 3434 6.994496 CCATAGATTCTCTTTATGACAGGCAA 59.006 38.462 0.00 0.00 0.00 4.52
3193 3523 6.725364 ACTCACTATTTTCAGATCCACCAAT 58.275 36.000 0.00 0.00 0.00 3.16
3283 3624 4.085357 TCTAACAGGAGAGCAGCAAAAA 57.915 40.909 0.00 0.00 0.00 1.94
3291 3632 6.109359 ACAAATGTACATCTAACAGGAGAGC 58.891 40.000 9.23 0.00 0.00 4.09
3478 3820 3.725634 ACTAGCAAGGGAGGTTCACTAT 58.274 45.455 0.00 0.00 24.29 2.12
3605 3947 1.849977 AGGAACGGAGGGAGTACTTC 58.150 55.000 0.00 0.00 0.00 3.01
3607 3949 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
3608 3950 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3609 3951 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3610 3952 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3611 3953 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3612 3954 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3613 3955 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3614 3956 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3615 3957 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3629 3971 9.388506 CATGGTGAAATCTCTACAAAGACTTAT 57.611 33.333 0.00 0.00 0.00 1.73
3630 3972 7.824289 CCATGGTGAAATCTCTACAAAGACTTA 59.176 37.037 2.57 0.00 0.00 2.24
3631 3973 6.656693 CCATGGTGAAATCTCTACAAAGACTT 59.343 38.462 2.57 0.00 0.00 3.01
3632 3974 6.013379 TCCATGGTGAAATCTCTACAAAGACT 60.013 38.462 12.58 0.00 0.00 3.24
3633 3975 6.092807 GTCCATGGTGAAATCTCTACAAAGAC 59.907 42.308 12.58 0.00 0.00 3.01
3634 3976 6.173339 GTCCATGGTGAAATCTCTACAAAGA 58.827 40.000 12.58 0.00 0.00 2.52
3635 3977 5.355350 GGTCCATGGTGAAATCTCTACAAAG 59.645 44.000 12.58 0.00 0.00 2.77
3636 3978 5.222027 TGGTCCATGGTGAAATCTCTACAAA 60.222 40.000 12.58 0.00 0.00 2.83
3637 3979 4.288366 TGGTCCATGGTGAAATCTCTACAA 59.712 41.667 12.58 0.00 0.00 2.41
3638 3980 3.843619 TGGTCCATGGTGAAATCTCTACA 59.156 43.478 12.58 0.00 0.00 2.74
3639 3981 4.192317 GTGGTCCATGGTGAAATCTCTAC 58.808 47.826 12.58 0.00 0.00 2.59
3640 3982 3.843619 TGTGGTCCATGGTGAAATCTCTA 59.156 43.478 12.58 0.00 0.00 2.43
3641 3983 2.644299 TGTGGTCCATGGTGAAATCTCT 59.356 45.455 12.58 0.00 0.00 3.10
3642 3984 3.071874 TGTGGTCCATGGTGAAATCTC 57.928 47.619 12.58 0.00 0.00 2.75
3643 3985 3.744940 ATGTGGTCCATGGTGAAATCT 57.255 42.857 12.58 0.00 30.69 2.40
3644 3986 3.312421 CGTATGTGGTCCATGGTGAAATC 59.688 47.826 12.58 0.00 34.86 2.17
3645 3987 3.278574 CGTATGTGGTCCATGGTGAAAT 58.721 45.455 12.58 3.51 34.86 2.17
3646 3988 2.616765 CCGTATGTGGTCCATGGTGAAA 60.617 50.000 12.58 0.00 34.86 2.69
3647 3989 1.065782 CCGTATGTGGTCCATGGTGAA 60.066 52.381 12.58 0.00 34.86 3.18
3648 3990 0.539518 CCGTATGTGGTCCATGGTGA 59.460 55.000 12.58 0.00 34.86 4.02
3649 3991 0.539518 TCCGTATGTGGTCCATGGTG 59.460 55.000 12.58 0.00 34.86 4.17
3650 3992 1.140852 CATCCGTATGTGGTCCATGGT 59.859 52.381 12.58 0.00 34.86 3.55
3651 3993 1.140852 ACATCCGTATGTGGTCCATGG 59.859 52.381 4.97 4.97 44.79 3.66
3652 3994 2.620251 ACATCCGTATGTGGTCCATG 57.380 50.000 0.00 0.00 44.79 3.66
3653 3995 4.160329 AGATACATCCGTATGTGGTCCAT 58.840 43.478 3.56 0.00 45.99 3.41
3654 3996 3.572642 AGATACATCCGTATGTGGTCCA 58.427 45.455 3.56 0.00 45.99 4.02
3655 3997 5.008331 TCTAGATACATCCGTATGTGGTCC 58.992 45.833 3.56 0.00 45.99 4.46
3656 3998 6.556212 CATCTAGATACATCCGTATGTGGTC 58.444 44.000 4.54 2.46 45.99 4.02
3657 3999 5.105716 GCATCTAGATACATCCGTATGTGGT 60.106 44.000 4.54 0.00 45.99 4.16
3658 4000 5.105756 TGCATCTAGATACATCCGTATGTGG 60.106 44.000 4.54 0.00 45.99 4.17
3659 4001 5.954335 TGCATCTAGATACATCCGTATGTG 58.046 41.667 4.54 0.00 45.99 3.21
3661 4003 8.484641 AAAATGCATCTAGATACATCCGTATG 57.515 34.615 17.09 0.00 38.48 2.39
3662 4004 9.809096 CTAAAATGCATCTAGATACATCCGTAT 57.191 33.333 17.09 0.85 41.16 3.06
3663 4005 9.020731 TCTAAAATGCATCTAGATACATCCGTA 57.979 33.333 17.09 9.71 0.00 4.02
3664 4006 7.896811 TCTAAAATGCATCTAGATACATCCGT 58.103 34.615 17.09 9.18 0.00 4.69
3665 4007 8.031864 ACTCTAAAATGCATCTAGATACATCCG 58.968 37.037 17.09 7.74 0.00 4.18
3687 4029 9.323985 GAGCAAAAATGAGTGAATCTATACTCT 57.676 33.333 0.00 0.00 42.86 3.24
3688 4030 8.555361 GGAGCAAAAATGAGTGAATCTATACTC 58.445 37.037 0.00 0.00 42.77 2.59
3689 4031 7.225538 CGGAGCAAAAATGAGTGAATCTATACT 59.774 37.037 0.00 0.00 0.00 2.12
3690 4032 7.011482 ACGGAGCAAAAATGAGTGAATCTATAC 59.989 37.037 0.00 0.00 0.00 1.47
3691 4033 7.047891 ACGGAGCAAAAATGAGTGAATCTATA 58.952 34.615 0.00 0.00 0.00 1.31
3692 4034 5.882557 ACGGAGCAAAAATGAGTGAATCTAT 59.117 36.000 0.00 0.00 0.00 1.98
3693 4035 5.245531 ACGGAGCAAAAATGAGTGAATCTA 58.754 37.500 0.00 0.00 0.00 1.98
3694 4036 4.074970 ACGGAGCAAAAATGAGTGAATCT 58.925 39.130 0.00 0.00 0.00 2.40
3695 4037 4.425577 ACGGAGCAAAAATGAGTGAATC 57.574 40.909 0.00 0.00 0.00 2.52
3696 4038 5.415701 ACATACGGAGCAAAAATGAGTGAAT 59.584 36.000 0.00 0.00 0.00 2.57
3697 4039 4.759693 ACATACGGAGCAAAAATGAGTGAA 59.240 37.500 0.00 0.00 0.00 3.18
3698 4040 4.154015 CACATACGGAGCAAAAATGAGTGA 59.846 41.667 0.00 0.00 0.00 3.41
3699 4041 4.406069 CACATACGGAGCAAAAATGAGTG 58.594 43.478 0.00 0.00 0.00 3.51
3700 4042 3.440173 CCACATACGGAGCAAAAATGAGT 59.560 43.478 0.00 0.00 0.00 3.41
3701 4043 3.440173 ACCACATACGGAGCAAAAATGAG 59.560 43.478 0.00 0.00 0.00 2.90
3702 4044 3.417101 ACCACATACGGAGCAAAAATGA 58.583 40.909 0.00 0.00 0.00 2.57
3703 4045 3.427503 GGACCACATACGGAGCAAAAATG 60.428 47.826 0.00 0.00 0.00 2.32
3704 4046 2.752903 GGACCACATACGGAGCAAAAAT 59.247 45.455 0.00 0.00 0.00 1.82
3705 4047 2.156098 GGACCACATACGGAGCAAAAA 58.844 47.619 0.00 0.00 0.00 1.94
3706 4048 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
3707 4049 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
3708 4050 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
3709 4051 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
3710 4052 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
3711 4053 2.035961 CCACTATGGACCACATACGGAG 59.964 54.545 0.00 0.00 40.96 4.63
3712 4054 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
3713 4055 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
3736 4078 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
3737 4079 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
3738 4080 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
3739 4081 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
3740 4082 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
3741 4083 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3742 4084 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3743 4085 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3744 4086 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3745 4087 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3746 4088 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3747 4089 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3748 4090 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
3749 4091 9.471702 CTTATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
3750 4092 7.954620 ACTTATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
3751 4093 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
3752 4094 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
3753 4095 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3754 4096 5.134725 ACTTATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
3755 4097 4.803329 ACTTATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
3756 4098 3.684408 ACTTATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
3757 4099 3.740452 GCAACTTATACTCCCTCCGTTCC 60.740 52.174 0.00 0.00 0.00 3.62
3758 4100 3.118884 TGCAACTTATACTCCCTCCGTTC 60.119 47.826 0.00 0.00 0.00 3.95
3759 4101 2.835764 TGCAACTTATACTCCCTCCGTT 59.164 45.455 0.00 0.00 0.00 4.44
3760 4102 2.463752 TGCAACTTATACTCCCTCCGT 58.536 47.619 0.00 0.00 0.00 4.69
3761 4103 3.393800 CATGCAACTTATACTCCCTCCG 58.606 50.000 0.00 0.00 0.00 4.63
3762 4104 3.142174 GCATGCAACTTATACTCCCTCC 58.858 50.000 14.21 0.00 0.00 4.30
3763 4105 3.808728 TGCATGCAACTTATACTCCCTC 58.191 45.455 20.30 0.00 0.00 4.30
3764 4106 3.931907 TGCATGCAACTTATACTCCCT 57.068 42.857 20.30 0.00 0.00 4.20
3765 4107 4.494350 CATGCATGCAACTTATACTCCC 57.506 45.455 26.68 0.00 0.00 4.30
3784 4126 4.592942 TCAAGATGGCTTCTAAACTGCAT 58.407 39.130 3.03 0.00 33.05 3.96
3785 4127 4.005650 CTCAAGATGGCTTCTAAACTGCA 58.994 43.478 3.03 0.00 33.05 4.41
3786 4128 3.181502 GCTCAAGATGGCTTCTAAACTGC 60.182 47.826 3.03 1.67 33.05 4.40
3787 4129 4.005650 TGCTCAAGATGGCTTCTAAACTG 58.994 43.478 3.03 0.00 33.05 3.16
3788 4130 4.260170 CTGCTCAAGATGGCTTCTAAACT 58.740 43.478 3.03 0.00 33.05 2.66
3789 4131 3.181502 GCTGCTCAAGATGGCTTCTAAAC 60.182 47.826 3.03 0.00 33.05 2.01
3905 4249 0.466922 GCAGCAGGCATGACCCTATT 60.467 55.000 0.62 0.00 43.97 1.73
3940 4284 2.512515 GGAGGCCACGTCTCATGC 60.513 66.667 5.01 0.00 35.78 4.06
3942 4286 1.194781 ACTTGGAGGCCACGTCTCAT 61.195 55.000 5.01 0.00 35.78 2.90
3972 4319 1.891919 GGCTGACTGCGTCCAACAA 60.892 57.895 6.30 0.00 44.05 2.83
4049 4396 1.372087 GAGCCTCATCCCTGCAAACG 61.372 60.000 0.00 0.00 0.00 3.60
4094 4441 1.271543 CCAACTGGCAAGATCTGGACA 60.272 52.381 5.26 5.26 0.00 4.02
4151 4498 1.514678 GCTCGTGTCAACATTGGGCA 61.515 55.000 5.61 0.00 32.84 5.36
4489 4887 9.865321 TGTGTATACTTGTCCTAACTGAATTAC 57.135 33.333 4.17 0.00 0.00 1.89
4529 4928 9.221775 GCCTCGTATTTAAACATGTTTTATCAG 57.778 33.333 27.66 16.96 34.23 2.90
4564 4967 3.130516 CGTTCATCTCTTACAGGGCAGTA 59.869 47.826 0.00 0.00 0.00 2.74
4565 4968 2.093973 CGTTCATCTCTTACAGGGCAGT 60.094 50.000 0.00 0.00 0.00 4.40
4567 4970 1.405526 GCGTTCATCTCTTACAGGGCA 60.406 52.381 0.00 0.00 0.00 5.36
4729 6888 1.080093 GTGCATCTTCGTCGGTCCA 60.080 57.895 0.00 0.00 0.00 4.02
4817 6976 2.158623 TGATGATGGGTATGGCAGGAAC 60.159 50.000 0.00 0.00 0.00 3.62
4931 7092 2.048603 GTGGCAGCAACAGATCCCC 61.049 63.158 0.00 0.00 0.00 4.81
4934 7095 0.953727 TTGTGTGGCAGCAACAGATC 59.046 50.000 1.57 0.00 0.00 2.75
4995 7527 3.138798 GGGCACTCCTCTCGCGTA 61.139 66.667 5.77 0.00 0.00 4.42
5033 7565 0.320683 CCAACTCGCCATCACAGTCA 60.321 55.000 0.00 0.00 0.00 3.41
5071 7603 4.113815 CGGCAAGCCCTCATCCCA 62.114 66.667 5.34 0.00 0.00 4.37
5256 7876 1.271543 CCCAGCACCAACTCATCAAGA 60.272 52.381 0.00 0.00 0.00 3.02
5257 7877 1.171308 CCCAGCACCAACTCATCAAG 58.829 55.000 0.00 0.00 0.00 3.02
5258 7878 0.770499 TCCCAGCACCAACTCATCAA 59.230 50.000 0.00 0.00 0.00 2.57
5259 7879 0.770499 TTCCCAGCACCAACTCATCA 59.230 50.000 0.00 0.00 0.00 3.07
5260 7880 1.815003 CTTTCCCAGCACCAACTCATC 59.185 52.381 0.00 0.00 0.00 2.92
5261 7881 1.548582 CCTTTCCCAGCACCAACTCAT 60.549 52.381 0.00 0.00 0.00 2.90
5262 7882 0.178992 CCTTTCCCAGCACCAACTCA 60.179 55.000 0.00 0.00 0.00 3.41
5263 7883 0.110486 TCCTTTCCCAGCACCAACTC 59.890 55.000 0.00 0.00 0.00 3.01
5269 7889 0.670854 GTCGAGTCCTTTCCCAGCAC 60.671 60.000 0.00 0.00 0.00 4.40
5374 8006 8.989653 AAAAACTGACTTTATGGAAAAACGAA 57.010 26.923 0.00 0.00 0.00 3.85
5475 8108 1.134037 TGGCCTACACTCGTTTTTGGT 60.134 47.619 3.32 0.00 0.00 3.67
5478 8111 3.066203 CAGTTTGGCCTACACTCGTTTTT 59.934 43.478 3.32 0.00 0.00 1.94
5557 8191 5.375417 TTCACATTTGCCACAACTCTATG 57.625 39.130 0.00 0.00 0.00 2.23
5774 8410 6.715264 CAGATTACAAACCAGAAGTTAAGGGT 59.285 38.462 0.00 0.00 37.88 4.34
6008 8644 9.104965 CTGTGAACCAAAACGGATATAATTAGA 57.895 33.333 0.00 0.00 38.63 2.10
6029 8665 0.887836 CAGCTGCTCTTTGCCTGTGA 60.888 55.000 0.00 0.00 42.00 3.58
6086 8722 2.553086 CCATTTTGTGCTGCAAGTTGT 58.447 42.857 2.77 0.00 38.47 3.32
6154 8792 5.694995 ACCCTTGGTATGACAATTATCAGG 58.305 41.667 0.00 0.00 32.11 3.86
6370 9008 4.155826 GTGTGCATTACAGATTGGTTGCTA 59.844 41.667 0.00 0.00 40.69 3.49
6502 9140 0.318869 TGCTGCAAAGCCATGAAACG 60.319 50.000 0.00 0.00 0.00 3.60
6581 9219 1.472480 CCATTGGAAAGCCGGTAACAG 59.528 52.381 1.90 0.00 36.79 3.16
6629 9267 0.871722 CATCAAAGGAACACGGCGAA 59.128 50.000 16.62 0.00 0.00 4.70
6702 9340 2.111384 GAGGTGTAGAATCTCTGGGCA 58.889 52.381 0.00 0.00 0.00 5.36
6704 9342 3.636300 CTGAGAGGTGTAGAATCTCTGGG 59.364 52.174 0.00 0.00 40.14 4.45
7119 9757 4.463050 AGACCCAATAAGAACCAACCAA 57.537 40.909 0.00 0.00 0.00 3.67
7307 9945 1.200519 TCTCCTCCATGTTTACCCCG 58.799 55.000 0.00 0.00 0.00 5.73
7322 9960 3.712187 CTCGTGCTCTTTAAGGATCTCC 58.288 50.000 0.00 0.00 0.00 3.71
7608 10246 4.597075 AGGCCTTCTTCTTCTTCTTCTTCT 59.403 41.667 0.00 0.00 0.00 2.85
7609 10247 4.694982 CAGGCCTTCTTCTTCTTCTTCTTC 59.305 45.833 0.00 0.00 0.00 2.87
7610 10248 4.650734 CAGGCCTTCTTCTTCTTCTTCTT 58.349 43.478 0.00 0.00 0.00 2.52
7611 10249 3.558958 GCAGGCCTTCTTCTTCTTCTTCT 60.559 47.826 0.00 0.00 0.00 2.85
7612 10250 2.746904 GCAGGCCTTCTTCTTCTTCTTC 59.253 50.000 0.00 0.00 0.00 2.87
7843 10486 9.731819 CAGATTGAGATTGTATTGGAATGAAAG 57.268 33.333 0.00 0.00 0.00 2.62
7860 10522 7.116948 GTGAAAGATTTCGTTCTCAGATTGAGA 59.883 37.037 4.73 4.73 44.23 3.27
7861 10523 7.095481 TGTGAAAGATTTCGTTCTCAGATTGAG 60.095 37.037 7.56 0.00 41.56 3.02
7867 10529 6.292389 ACTTGTGAAAGATTTCGTTCTCAG 57.708 37.500 9.67 7.84 38.39 3.35
7868 10530 6.677781 AACTTGTGAAAGATTTCGTTCTCA 57.322 33.333 7.56 7.18 40.01 3.27
7872 10534 4.499040 CGCAAACTTGTGAAAGATTTCGTT 59.501 37.500 0.00 0.00 41.01 3.85
7889 10554 2.639286 CCCAGACAGCACGCAAAC 59.361 61.111 0.00 0.00 0.00 2.93
7946 10611 4.025647 CCAAGAGAAATCGGTCGCTTATTC 60.026 45.833 1.70 0.00 35.74 1.75
7991 10656 2.860293 CGCGCCAATGTTTCGTCT 59.140 55.556 0.00 0.00 0.00 4.18
8247 10936 1.385206 AATGGAGGAGAGGGAGGCC 60.385 63.158 0.00 0.00 0.00 5.19
8248 10937 0.399806 AGAATGGAGGAGAGGGAGGC 60.400 60.000 0.00 0.00 0.00 4.70
8434 11123 3.854459 GAAAGCTCGCGCCTTCCG 61.854 66.667 0.00 0.00 40.75 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.