Multiple sequence alignment - TraesCS7B01G220200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G220200 chr7B 100.000 2004 0 0 2086 4089 411494610 411492607 0.000000e+00 3701.0
1 TraesCS7B01G220200 chr7B 100.000 1862 0 0 1 1862 411496695 411494834 0.000000e+00 3439.0
2 TraesCS7B01G220200 chr7B 92.366 131 9 1 2127 2256 554891653 554891783 6.980000e-43 185.0
3 TraesCS7B01G220200 chr7D 94.124 1872 68 15 1 1862 401839727 401837888 0.000000e+00 2809.0
4 TraesCS7B01G220200 chr7D 96.718 1158 35 2 2245 3400 401837795 401836639 0.000000e+00 1925.0
5 TraesCS7B01G220200 chr7D 96.821 692 16 4 3400 4089 401836602 401835915 0.000000e+00 1151.0
6 TraesCS7B01G220200 chr7A 96.210 1161 37 3 2245 3400 459627304 459626146 0.000000e+00 1893.0
7 TraesCS7B01G220200 chr7A 91.529 1275 80 17 441 1712 459628915 459627666 0.000000e+00 1731.0
8 TraesCS7B01G220200 chr7A 97.254 692 15 3 3400 4089 459626109 459625420 0.000000e+00 1170.0
9 TraesCS7B01G220200 chr7A 96.175 366 9 2 1 365 459629419 459629058 9.790000e-166 593.0
10 TraesCS7B01G220200 chr5B 95.935 123 5 0 2127 2249 451432988 451432866 2.490000e-47 200.0
11 TraesCS7B01G220200 chr5B 96.581 117 4 0 2128 2244 105541664 105541548 1.160000e-45 195.0
12 TraesCS7B01G220200 chr5B 92.481 133 7 3 2128 2257 295212846 295212714 1.940000e-43 187.0
13 TraesCS7B01G220200 chr4B 94.444 126 6 1 2125 2249 471336235 471336360 4.170000e-45 193.0
14 TraesCS7B01G220200 chr3B 93.798 129 7 1 2121 2249 61536207 61536334 4.170000e-45 193.0
15 TraesCS7B01G220200 chr3B 78.873 142 26 4 1028 1167 151444568 151444707 4.350000e-15 93.5
16 TraesCS7B01G220200 chr6B 91.241 137 11 1 2121 2256 128924894 128924758 6.980000e-43 185.0
17 TraesCS7B01G220200 chr3A 92.366 131 9 1 2127 2256 699994217 699994087 6.980000e-43 185.0
18 TraesCS7B01G220200 chr3A 78.873 142 26 4 1028 1167 555042243 555042104 4.350000e-15 93.5
19 TraesCS7B01G220200 chr2D 90.580 138 10 3 2128 2264 441085883 441085748 3.250000e-41 180.0
20 TraesCS7B01G220200 chr3D 78.873 142 26 4 1028 1167 100853603 100853742 4.350000e-15 93.5
21 TraesCS7B01G220200 chr1D 78.146 151 27 6 1001 1148 140519698 140519845 1.570000e-14 91.6
22 TraesCS7B01G220200 chr1B 80.000 125 17 7 1028 1148 198153410 198153290 7.280000e-13 86.1
23 TraesCS7B01G220200 chr1A 80.000 125 17 7 1028 1148 150456373 150456253 7.280000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G220200 chr7B 411492607 411496695 4088 True 3570.000000 3701 100.000000 1 4089 2 chr7B.!!$R1 4088
1 TraesCS7B01G220200 chr7D 401835915 401839727 3812 True 1961.666667 2809 95.887667 1 4089 3 chr7D.!!$R1 4088
2 TraesCS7B01G220200 chr7A 459625420 459629419 3999 True 1346.750000 1893 95.292000 1 4089 4 chr7A.!!$R1 4088

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 646 0.251121 TCCATGAACCGCCACATGTT 60.251 50.0 0.0 0.0 41.26 2.71 F
2106 2334 0.250513 CCCTCACTAAGTCTGCCACC 59.749 60.0 0.0 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2358 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
3855 4129 1.120530 TCGGGGATGCCTACTTTCTC 58.879 55.0 2.19 0.00 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 305 7.562412 CACTTATCTGATCTCTTTACAATGCG 58.438 38.462 0.00 0.00 0.00 4.73
312 314 7.591057 TGATCTCTTTACAATGCGTTTTCTTTG 59.409 33.333 0.00 0.00 0.00 2.77
441 529 8.233190 CCATACATTTTTGTTGTTGTTGTTGTT 58.767 29.630 0.00 0.00 0.00 2.83
442 530 9.048922 CATACATTTTTGTTGTTGTTGTTGTTG 57.951 29.630 0.00 0.00 0.00 3.33
443 531 7.020914 ACATTTTTGTTGTTGTTGTTGTTGT 57.979 28.000 0.00 0.00 0.00 3.32
444 532 7.475840 ACATTTTTGTTGTTGTTGTTGTTGTT 58.524 26.923 0.00 0.00 0.00 2.83
445 533 7.430502 ACATTTTTGTTGTTGTTGTTGTTGTTG 59.569 29.630 0.00 0.00 0.00 3.33
446 534 6.422776 TTTTGTTGTTGTTGTTGTTGTTGT 57.577 29.167 0.00 0.00 0.00 3.32
447 535 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
448 536 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
449 537 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
450 538 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
451 539 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
452 540 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
453 541 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
454 542 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
455 543 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
456 544 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
457 545 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
458 546 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
459 547 3.457234 TGTTGTTGTTGTTGTTGTTGCA 58.543 36.364 0.00 0.00 0.00 4.08
460 548 4.060900 TGTTGTTGTTGTTGTTGTTGCAT 58.939 34.783 0.00 0.00 0.00 3.96
461 549 4.151335 TGTTGTTGTTGTTGTTGTTGCATC 59.849 37.500 0.00 0.00 0.00 3.91
462 550 3.917988 TGTTGTTGTTGTTGTTGCATCA 58.082 36.364 0.00 0.00 0.00 3.07
488 576 2.964740 TGACTTCAGAAAGCTCATCCG 58.035 47.619 0.00 0.00 35.81 4.18
490 578 2.926838 GACTTCAGAAAGCTCATCCGAC 59.073 50.000 0.00 0.00 35.81 4.79
551 646 0.251121 TCCATGAACCGCCACATGTT 60.251 50.000 0.00 0.00 41.26 2.71
559 654 1.541147 ACCGCCACATGTTTCATCTTG 59.459 47.619 0.00 0.00 0.00 3.02
764 866 6.801539 AGTATTATTATTGTGTGGGATGCG 57.198 37.500 0.00 0.00 0.00 4.73
812 914 3.255725 TGCTCCCACTATAAAAACGACG 58.744 45.455 0.00 0.00 0.00 5.12
933 1035 2.592102 AGGTTGTGTGCAATCCATCT 57.408 45.000 0.00 0.00 36.40 2.90
956 1058 5.105567 TCTTCTTCGTCTCTCCATCTACT 57.894 43.478 0.00 0.00 0.00 2.57
1074 1178 4.314440 ACCTTCTGCAAGCGCCGA 62.314 61.111 2.29 0.00 37.32 5.54
1104 1208 1.136329 TCAAGAAGGCCAGGGAGCTT 61.136 55.000 5.01 0.00 0.00 3.74
1107 1211 1.379176 GAAGGCCAGGGAGCTTTCC 60.379 63.158 5.01 0.00 41.58 3.13
1116 1220 1.545706 GGGAGCTTTCCGTCCTCTGT 61.546 60.000 0.00 0.00 32.90 3.41
1179 1283 2.282674 TACGACCTCGCCACCACT 60.283 61.111 0.00 0.00 44.43 4.00
1196 1300 2.894126 CCACTGGGTATGACTAGCTAGG 59.106 54.545 24.35 7.13 38.02 3.02
1197 1301 3.436615 CCACTGGGTATGACTAGCTAGGA 60.437 52.174 24.35 11.13 38.02 2.94
1198 1302 4.411927 CACTGGGTATGACTAGCTAGGAT 58.588 47.826 24.35 17.03 38.02 3.24
1202 1306 6.153942 TGGGTATGACTAGCTAGGATATGT 57.846 41.667 24.35 3.10 0.00 2.29
1213 1317 6.207509 AGCTAGGATATGTACTTCCTCTCA 57.792 41.667 13.62 0.46 41.50 3.27
1214 1318 6.615617 AGCTAGGATATGTACTTCCTCTCAA 58.384 40.000 13.62 0.18 41.50 3.02
1226 1330 7.821359 TGTACTTCCTCTCAATTCTCTTGATTG 59.179 37.037 0.00 0.00 0.00 2.67
1227 1331 7.013823 ACTTCCTCTCAATTCTCTTGATTGA 57.986 36.000 0.00 0.00 33.77 2.57
1229 1333 5.426504 TCCTCTCAATTCTCTTGATTGAGC 58.573 41.667 17.59 0.00 46.43 4.26
1230 1334 4.270566 CCTCTCAATTCTCTTGATTGAGCG 59.729 45.833 17.59 13.25 46.43 5.03
1231 1335 4.186926 TCTCAATTCTCTTGATTGAGCGG 58.813 43.478 17.59 1.65 46.43 5.52
1232 1336 3.937706 CTCAATTCTCTTGATTGAGCGGT 59.062 43.478 12.29 0.00 42.92 5.68
1233 1337 4.326826 TCAATTCTCTTGATTGAGCGGTT 58.673 39.130 0.00 0.00 34.29 4.44
1234 1338 4.154737 TCAATTCTCTTGATTGAGCGGTTG 59.845 41.667 0.00 0.00 34.29 3.77
1235 1339 1.442769 TCTCTTGATTGAGCGGTTGC 58.557 50.000 0.00 0.00 43.24 4.17
1267 1371 3.068024 ACCTCGAGCTCATTCATCTCTTC 59.932 47.826 15.40 0.00 0.00 2.87
1275 1379 6.108015 AGCTCATTCATCTCTTCTTGTCTTC 58.892 40.000 0.00 0.00 0.00 2.87
1296 1400 2.079925 GTCTTGAGCAGAACCATGGAC 58.920 52.381 21.47 12.11 31.28 4.02
1399 1503 3.430651 GCTTCTTCTCATGTCCTCTCCTG 60.431 52.174 0.00 0.00 0.00 3.86
1427 1531 5.538118 TGTACAAGTCTAAGTCACACATGG 58.462 41.667 0.00 0.00 0.00 3.66
1483 1587 6.067263 TGGTGAAATTCTAAAACTTGACCG 57.933 37.500 0.00 0.00 0.00 4.79
1577 1681 3.689872 AGGTACTCCATCCTGCTTAGA 57.310 47.619 0.00 0.00 35.89 2.10
1598 1702 4.153117 AGACATTTCGCTTTGCTTCTACAG 59.847 41.667 0.00 0.00 0.00 2.74
1624 1728 7.704899 GGTCACATTATTTATGCCCAAGTAAAC 59.295 37.037 0.00 0.00 37.81 2.01
1659 1763 6.485984 GCTCACAAATGGAGATGAAGTGATAT 59.514 38.462 0.00 0.00 34.47 1.63
1698 1802 8.726988 TGTCTAGTTTATTTCATAAGCACCAAC 58.273 33.333 0.00 0.00 0.00 3.77
1745 1875 3.047877 GTGGCGGACCTTCAACGG 61.048 66.667 0.00 0.00 36.63 4.44
1772 1904 3.198635 TGAGAGGGGCTAAATGAGTCTTG 59.801 47.826 0.00 0.00 0.00 3.02
1790 1922 3.646162 TCTTGAGTAGAGTTGAAAGGGCA 59.354 43.478 0.00 0.00 0.00 5.36
1819 1951 9.727859 TCTAGTGTGTTATGTTAAATTTGGCTA 57.272 29.630 0.00 0.00 0.00 3.93
2106 2334 0.250513 CCCTCACTAAGTCTGCCACC 59.749 60.000 0.00 0.00 0.00 4.61
2107 2335 0.976641 CCTCACTAAGTCTGCCACCA 59.023 55.000 0.00 0.00 0.00 4.17
2129 2357 3.009805 ACACCCTGGTAACCCTGAAATAC 59.990 47.826 0.00 0.00 31.55 1.89
2130 2358 3.265995 CACCCTGGTAACCCTGAAATACT 59.734 47.826 0.00 0.00 31.55 2.12
2131 2359 3.522343 ACCCTGGTAACCCTGAAATACTC 59.478 47.826 0.00 0.00 31.55 2.59
2132 2360 3.118000 CCCTGGTAACCCTGAAATACTCC 60.118 52.174 0.00 0.00 31.55 3.85
2133 2361 3.118000 CCTGGTAACCCTGAAATACTCCC 60.118 52.174 0.00 0.00 31.55 4.30
2134 2362 3.780850 CTGGTAACCCTGAAATACTCCCT 59.219 47.826 0.00 0.00 31.55 4.20
2135 2363 3.778629 TGGTAACCCTGAAATACTCCCTC 59.221 47.826 0.00 0.00 0.00 4.30
2136 2364 3.136077 GGTAACCCTGAAATACTCCCTCC 59.864 52.174 0.00 0.00 0.00 4.30
2137 2365 1.497161 ACCCTGAAATACTCCCTCCG 58.503 55.000 0.00 0.00 0.00 4.63
2138 2366 1.273666 ACCCTGAAATACTCCCTCCGT 60.274 52.381 0.00 0.00 0.00 4.69
2139 2367 1.413077 CCCTGAAATACTCCCTCCGTC 59.587 57.143 0.00 0.00 0.00 4.79
2140 2368 1.413077 CCTGAAATACTCCCTCCGTCC 59.587 57.143 0.00 0.00 0.00 4.79
2141 2369 1.067212 CTGAAATACTCCCTCCGTCCG 59.933 57.143 0.00 0.00 0.00 4.79
2142 2370 0.388294 GAAATACTCCCTCCGTCCGG 59.612 60.000 0.00 0.00 0.00 5.14
2143 2371 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
2144 2372 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2145 2373 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2146 2374 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2147 2375 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2148 2376 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2149 2377 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2150 2378 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2151 2379 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2152 2380 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2153 2381 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2154 2382 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2155 2383 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2156 2384 1.004595 GTCCGGAAATACTTGTCGGC 58.995 55.000 5.23 0.00 40.42 5.54
2157 2385 0.609151 TCCGGAAATACTTGTCGGCA 59.391 50.000 0.00 0.00 40.42 5.69
2158 2386 1.006832 CCGGAAATACTTGTCGGCAG 58.993 55.000 0.00 0.00 34.17 4.85
2159 2387 1.404986 CCGGAAATACTTGTCGGCAGA 60.405 52.381 0.00 0.00 34.17 4.26
2160 2388 2.343101 CGGAAATACTTGTCGGCAGAA 58.657 47.619 0.00 0.00 0.00 3.02
2161 2389 2.936498 CGGAAATACTTGTCGGCAGAAT 59.064 45.455 0.00 0.00 0.00 2.40
2162 2390 3.242413 CGGAAATACTTGTCGGCAGAATG 60.242 47.826 0.00 0.00 40.87 2.67
2163 2391 3.065371 GGAAATACTTGTCGGCAGAATGG 59.935 47.826 0.00 0.00 35.86 3.16
2164 2392 3.627395 AATACTTGTCGGCAGAATGGA 57.373 42.857 0.00 0.00 35.86 3.41
2165 2393 3.845781 ATACTTGTCGGCAGAATGGAT 57.154 42.857 0.00 0.00 35.86 3.41
2166 2394 1.742761 ACTTGTCGGCAGAATGGATG 58.257 50.000 0.00 0.00 35.86 3.51
2167 2395 1.003580 ACTTGTCGGCAGAATGGATGT 59.996 47.619 0.00 0.00 35.86 3.06
2168 2396 2.236146 ACTTGTCGGCAGAATGGATGTA 59.764 45.455 0.00 0.00 35.86 2.29
2169 2397 3.118261 ACTTGTCGGCAGAATGGATGTAT 60.118 43.478 0.00 0.00 35.86 2.29
2170 2398 3.111853 TGTCGGCAGAATGGATGTATC 57.888 47.619 0.00 0.00 35.86 2.24
2171 2399 2.700371 TGTCGGCAGAATGGATGTATCT 59.300 45.455 0.00 0.00 35.86 1.98
2172 2400 3.895041 TGTCGGCAGAATGGATGTATCTA 59.105 43.478 0.00 0.00 35.86 1.98
2173 2401 4.021981 TGTCGGCAGAATGGATGTATCTAG 60.022 45.833 0.00 0.00 35.86 2.43
2174 2402 4.218635 GTCGGCAGAATGGATGTATCTAGA 59.781 45.833 0.00 0.00 35.86 2.43
2175 2403 4.218635 TCGGCAGAATGGATGTATCTAGAC 59.781 45.833 0.00 0.00 35.86 2.59
2176 2404 4.489810 GGCAGAATGGATGTATCTAGACG 58.510 47.826 0.00 0.00 35.86 4.18
2177 2405 4.021894 GGCAGAATGGATGTATCTAGACGT 60.022 45.833 0.00 0.00 35.86 4.34
2178 2406 5.183331 GGCAGAATGGATGTATCTAGACGTA 59.817 44.000 0.00 0.00 35.86 3.57
2179 2407 6.127591 GGCAGAATGGATGTATCTAGACGTAT 60.128 42.308 0.00 0.00 35.86 3.06
2180 2408 7.316640 GCAGAATGGATGTATCTAGACGTATT 58.683 38.462 0.00 0.00 35.86 1.89
2181 2409 7.815068 GCAGAATGGATGTATCTAGACGTATTT 59.185 37.037 0.00 0.00 35.86 1.40
2182 2410 9.698309 CAGAATGGATGTATCTAGACGTATTTT 57.302 33.333 0.00 0.00 0.00 1.82
2229 2457 5.671093 GCATTTCTGCGACAAGTATTTTC 57.329 39.130 0.00 0.00 38.92 2.29
2230 2458 4.260656 GCATTTCTGCGACAAGTATTTTCG 59.739 41.667 0.00 0.00 38.92 3.46
2231 2459 4.398549 TTTCTGCGACAAGTATTTTCGG 57.601 40.909 0.00 0.00 33.28 4.30
2232 2460 3.306917 TCTGCGACAAGTATTTTCGGA 57.693 42.857 0.00 0.00 33.28 4.55
2233 2461 2.991190 TCTGCGACAAGTATTTTCGGAC 59.009 45.455 0.00 0.00 33.28 4.79
2234 2462 1.722464 TGCGACAAGTATTTTCGGACG 59.278 47.619 0.00 0.00 33.28 4.79
2235 2463 1.060122 GCGACAAGTATTTTCGGACGG 59.940 52.381 0.00 0.00 33.28 4.79
2236 2464 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2237 2465 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2238 2466 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2239 2467 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2240 2468 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2241 2469 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2242 2470 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2243 2471 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2290 2518 5.645929 TCTCAAAGCAACACAAACTTGTCTA 59.354 36.000 0.00 0.00 39.91 2.59
2310 2538 9.856488 TTGTCTATAAGTAGCACAAACTTAGAG 57.144 33.333 10.05 10.05 44.47 2.43
2369 2597 5.300792 TCTCCACCAACCAAACAAAACTATC 59.699 40.000 0.00 0.00 0.00 2.08
2432 2660 7.715686 TCTTCTAGCTATACTTCGATGAACTCA 59.284 37.037 5.16 0.00 0.00 3.41
2477 2705 5.047660 TGAAAACCATGGCAGGTACATTTAC 60.048 40.000 13.04 0.00 42.25 2.01
2480 2708 1.333619 CATGGCAGGTACATTTACGGC 59.666 52.381 0.00 0.00 0.00 5.68
2710 2938 8.026607 GCAAGGCAAGTCAATTAATAACAGTTA 58.973 33.333 0.00 0.00 0.00 2.24
2712 2940 9.908152 AAGGCAAGTCAATTAATAACAGTTAAC 57.092 29.630 0.00 0.00 0.00 2.01
2757 2985 8.114331 TCATTGACAATTTGCTGAAAGTAGAT 57.886 30.769 0.00 0.00 35.30 1.98
2873 3102 6.035843 ACTGCAAACTAGATTTTGTGTTGTG 58.964 36.000 0.00 0.00 38.51 3.33
2874 3103 5.960113 TGCAAACTAGATTTTGTGTTGTGT 58.040 33.333 0.00 0.00 38.51 3.72
2877 3106 7.148154 TGCAAACTAGATTTTGTGTTGTGTACT 60.148 33.333 0.00 0.00 38.51 2.73
3005 3234 3.014623 GGGCATTTTAGTACAGTCCCAC 58.985 50.000 0.00 0.00 32.89 4.61
3102 3331 3.709653 TCCTTCTGATGGTAATAACGCCT 59.290 43.478 9.18 0.00 0.00 5.52
3191 3420 6.452494 TTGCTCTGGTACTACTCTGTAATC 57.548 41.667 0.00 0.00 0.00 1.75
3193 3422 6.896883 TGCTCTGGTACTACTCTGTAATCTA 58.103 40.000 0.00 0.00 0.00 1.98
3242 3475 5.140454 CCCTTAAGGCCTTAAGTATTGCAT 58.860 41.667 42.43 15.73 46.42 3.96
3287 3520 4.535526 AAAGAACTCTTGAGGAGCTCTC 57.464 45.455 14.64 9.73 44.08 3.20
3352 3585 4.673580 GCTTCGAATGTTGAGATGTTGCAT 60.674 41.667 0.00 0.00 0.00 3.96
3464 3736 3.259123 AGAAACCATGCTGGAAAATCACC 59.741 43.478 8.91 0.00 40.96 4.02
3500 3772 6.827586 TTTGACGAGGCATATTTAAAACCT 57.172 33.333 0.00 0.00 0.00 3.50
3710 3982 3.055819 ACACGCAGTTATCAAGTCAGGAT 60.056 43.478 0.00 0.00 41.61 3.24
3725 3997 3.055094 GTCAGGATAGCTGGTTCCAGAAA 60.055 47.826 21.32 9.11 36.24 2.52
3775 4047 3.245300 ACTTGCAGTAGGAGAGACCAGTA 60.245 47.826 0.00 0.00 42.04 2.74
3806 4080 3.332919 CAGATCATAATTCCAGGCCTCG 58.667 50.000 0.00 0.00 0.00 4.63
3815 4089 1.379977 CCAGGCCTCGAGACCTACA 60.380 63.158 20.83 0.00 33.38 2.74
3836 4110 7.382488 CCTACACTCATATTCATACTGGAAACG 59.618 40.741 0.00 0.00 0.00 3.60
3855 4129 2.360801 ACGTGAGTGGAAATGGTTTTGG 59.639 45.455 0.00 0.00 46.97 3.28
3887 4161 6.790319 AGGCATCCCCGATATTATTTTTACT 58.210 36.000 0.00 0.00 39.21 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 222 1.774110 TTTGCTGACCTTCTTTGCCA 58.226 45.000 0.00 0.00 0.00 4.92
312 314 7.125792 TGATGGACTAAGGAAATAGAGGAAC 57.874 40.000 0.00 0.00 0.00 3.62
441 529 3.917988 TGATGCAACAACAACAACAACA 58.082 36.364 0.00 0.00 0.00 3.33
442 530 4.917887 TTGATGCAACAACAACAACAAC 57.082 36.364 5.14 0.00 28.65 3.32
443 531 4.391216 CCTTTGATGCAACAACAACAACAA 59.609 37.500 9.14 0.00 32.80 2.83
444 532 3.931468 CCTTTGATGCAACAACAACAACA 59.069 39.130 9.14 0.00 32.80 3.33
445 533 3.932089 ACCTTTGATGCAACAACAACAAC 59.068 39.130 9.14 0.00 32.80 3.32
446 534 4.199432 ACCTTTGATGCAACAACAACAA 57.801 36.364 9.14 0.00 31.38 2.83
447 535 3.883830 ACCTTTGATGCAACAACAACA 57.116 38.095 9.14 0.00 0.00 3.33
448 536 4.032786 GTCAACCTTTGATGCAACAACAAC 59.967 41.667 9.14 0.00 42.47 3.32
449 537 4.081752 AGTCAACCTTTGATGCAACAACAA 60.082 37.500 9.14 2.15 42.47 2.83
450 538 3.446873 AGTCAACCTTTGATGCAACAACA 59.553 39.130 9.14 0.76 42.47 3.33
451 539 4.045636 AGTCAACCTTTGATGCAACAAC 57.954 40.909 9.14 0.00 42.47 3.32
452 540 4.159321 TGAAGTCAACCTTTGATGCAACAA 59.841 37.500 5.14 5.14 42.47 2.83
453 541 3.698539 TGAAGTCAACCTTTGATGCAACA 59.301 39.130 0.00 0.00 42.47 3.33
454 542 4.036734 TCTGAAGTCAACCTTTGATGCAAC 59.963 41.667 0.00 0.00 42.47 4.17
455 543 4.206375 TCTGAAGTCAACCTTTGATGCAA 58.794 39.130 0.00 0.00 42.47 4.08
456 544 3.819368 TCTGAAGTCAACCTTTGATGCA 58.181 40.909 0.00 0.00 42.47 3.96
457 545 4.836125 TTCTGAAGTCAACCTTTGATGC 57.164 40.909 0.00 0.00 42.47 3.91
458 546 5.009410 AGCTTTCTGAAGTCAACCTTTGATG 59.991 40.000 0.00 0.00 42.47 3.07
459 547 5.136105 AGCTTTCTGAAGTCAACCTTTGAT 58.864 37.500 0.00 0.00 42.47 2.57
460 548 4.526970 AGCTTTCTGAAGTCAACCTTTGA 58.473 39.130 0.00 0.00 35.25 2.69
461 549 4.336433 TGAGCTTTCTGAAGTCAACCTTTG 59.664 41.667 0.00 0.00 35.25 2.77
462 550 4.526970 TGAGCTTTCTGAAGTCAACCTTT 58.473 39.130 0.00 0.00 35.25 3.11
488 576 0.392998 ATTGACATGACAGCCGGGTC 60.393 55.000 1.27 3.01 38.29 4.46
490 578 0.452987 CAATTGACATGACAGCCGGG 59.547 55.000 2.18 0.00 0.00 5.73
496 584 2.224402 TGACCGTCCAATTGACATGACA 60.224 45.455 7.12 0.00 44.71 3.58
551 646 5.084818 TCTATTGAGTTCGCCAAGATGAA 57.915 39.130 0.00 0.00 0.00 2.57
559 654 3.938963 TGTTCCATTCTATTGAGTTCGCC 59.061 43.478 0.00 0.00 0.00 5.54
764 866 2.585523 ATTCCCTTCCCCCTCCCCTC 62.586 65.000 0.00 0.00 0.00 4.30
812 914 0.820871 CCACAGGTGAGGCTAGAGAC 59.179 60.000 0.00 0.00 0.00 3.36
933 1035 5.502079 AGTAGATGGAGAGACGAAGAAGAA 58.498 41.667 0.00 0.00 0.00 2.52
956 1058 4.043310 GGATGGGTGGATGATTGATAAGGA 59.957 45.833 0.00 0.00 0.00 3.36
1026 1130 4.143333 ACGGGGTTCTCGATGCGG 62.143 66.667 0.00 0.00 0.00 5.69
1074 1178 2.607750 TTCTTGAGGAGCCCCGCT 60.608 61.111 0.00 0.00 43.88 5.52
1104 1208 1.596934 GGCATCACAGAGGACGGAA 59.403 57.895 0.00 0.00 0.00 4.30
1107 1211 1.517257 GTCGGCATCACAGAGGACG 60.517 63.158 0.00 0.00 46.68 4.79
1179 1283 6.153942 ACATATCCTAGCTAGTCATACCCA 57.846 41.667 19.31 0.00 0.00 4.51
1192 1296 9.308000 AGAATTGAGAGGAAGTACATATCCTAG 57.692 37.037 13.08 0.00 46.04 3.02
1193 1297 9.303116 GAGAATTGAGAGGAAGTACATATCCTA 57.697 37.037 13.08 1.39 46.04 2.94
1196 1300 9.474920 CAAGAGAATTGAGAGGAAGTACATATC 57.525 37.037 0.00 0.00 0.00 1.63
1197 1301 9.206690 TCAAGAGAATTGAGAGGAAGTACATAT 57.793 33.333 0.00 0.00 0.00 1.78
1198 1302 8.595362 TCAAGAGAATTGAGAGGAAGTACATA 57.405 34.615 0.00 0.00 0.00 2.29
1202 1306 8.138928 TCAATCAAGAGAATTGAGAGGAAGTA 57.861 34.615 0.00 0.00 31.50 2.24
1213 1317 3.119708 GCAACCGCTCAATCAAGAGAATT 60.120 43.478 0.00 0.00 37.87 2.17
1214 1318 2.421424 GCAACCGCTCAATCAAGAGAAT 59.579 45.455 0.00 0.00 37.87 2.40
1228 1332 1.869690 GTTGAAGGAGAGCAACCGC 59.130 57.895 0.00 0.00 38.68 5.68
1231 1335 1.000955 TCGAGGTTGAAGGAGAGCAAC 59.999 52.381 0.00 0.00 42.67 4.17
1232 1336 1.273606 CTCGAGGTTGAAGGAGAGCAA 59.726 52.381 3.91 0.00 0.00 3.91
1233 1337 0.891373 CTCGAGGTTGAAGGAGAGCA 59.109 55.000 3.91 0.00 0.00 4.26
1234 1338 0.459411 GCTCGAGGTTGAAGGAGAGC 60.459 60.000 15.58 0.00 43.11 4.09
1235 1339 1.134175 GAGCTCGAGGTTGAAGGAGAG 59.866 57.143 19.66 0.00 0.00 3.20
1236 1340 1.178276 GAGCTCGAGGTTGAAGGAGA 58.822 55.000 19.66 0.00 0.00 3.71
1267 1371 3.018598 TCTGCTCAAGACGAAGACAAG 57.981 47.619 0.00 0.00 0.00 3.16
1275 1379 1.081892 CCATGGTTCTGCTCAAGACG 58.918 55.000 2.57 0.00 33.46 4.18
1296 1400 1.101635 TGTACCTCTCGATCAGCCCG 61.102 60.000 0.00 0.00 0.00 6.13
1399 1503 6.700081 TGTGTGACTTAGACTTGTACATGAAC 59.300 38.462 15.13 8.63 0.00 3.18
1427 1531 3.153919 TGACATGCCCACTTAAAAGTCC 58.846 45.455 0.00 0.00 37.08 3.85
1483 1587 2.922740 TGGGTCCTAGTGACAAACAC 57.077 50.000 11.82 0.00 46.38 3.32
1576 1680 4.398247 CTGTAGAAGCAAAGCGAAATGTC 58.602 43.478 0.00 0.00 0.00 3.06
1577 1681 3.189287 CCTGTAGAAGCAAAGCGAAATGT 59.811 43.478 0.00 0.00 0.00 2.71
1624 1728 5.587443 TCTCCATTTGTGAGCTAATGTGATG 59.413 40.000 6.27 0.00 36.54 3.07
1659 1763 4.530710 AACTAGACATGCTGGAAACGTA 57.469 40.909 0.00 0.00 0.00 3.57
1698 1802 7.384115 CAGGGCAGCTTTGAATGATAAAATATG 59.616 37.037 0.00 0.00 0.00 1.78
1702 1806 4.081531 CCAGGGCAGCTTTGAATGATAAAA 60.082 41.667 0.00 0.00 0.00 1.52
1708 1812 1.217244 GCCAGGGCAGCTTTGAATG 59.783 57.895 5.20 0.00 41.49 2.67
1745 1875 4.140536 CTCATTTAGCCCCTCTCAAATCC 58.859 47.826 0.00 0.00 0.00 3.01
1772 1904 5.249420 AGATTTGCCCTTTCAACTCTACTC 58.751 41.667 0.00 0.00 35.21 2.59
2106 2334 0.768622 TTCAGGGTTACCAGGGTGTG 59.231 55.000 2.98 0.00 40.13 3.82
2107 2335 1.525175 TTTCAGGGTTACCAGGGTGT 58.475 50.000 2.98 0.00 40.13 4.16
2129 2357 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2130 2358 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2131 2359 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2132 2360 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2133 2361 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2134 2362 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2135 2363 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2136 2364 1.274596 CCGACAAGTATTTCCGGACG 58.725 55.000 1.83 0.00 42.49 4.79
2137 2365 1.004595 GCCGACAAGTATTTCCGGAC 58.995 55.000 1.83 0.00 42.49 4.79
2138 2366 0.609151 TGCCGACAAGTATTTCCGGA 59.391 50.000 0.00 0.00 42.49 5.14
2139 2367 1.006832 CTGCCGACAAGTATTTCCGG 58.993 55.000 0.00 0.00 42.74 5.14
2140 2368 2.004583 TCTGCCGACAAGTATTTCCG 57.995 50.000 0.00 0.00 0.00 4.30
2141 2369 3.065371 CCATTCTGCCGACAAGTATTTCC 59.935 47.826 0.00 0.00 0.00 3.13
2142 2370 3.938963 TCCATTCTGCCGACAAGTATTTC 59.061 43.478 0.00 0.00 0.00 2.17
2143 2371 3.950397 TCCATTCTGCCGACAAGTATTT 58.050 40.909 0.00 0.00 0.00 1.40
2144 2372 3.627395 TCCATTCTGCCGACAAGTATT 57.373 42.857 0.00 0.00 0.00 1.89
2145 2373 3.118261 ACATCCATTCTGCCGACAAGTAT 60.118 43.478 0.00 0.00 0.00 2.12
2146 2374 2.236146 ACATCCATTCTGCCGACAAGTA 59.764 45.455 0.00 0.00 0.00 2.24
2147 2375 1.003580 ACATCCATTCTGCCGACAAGT 59.996 47.619 0.00 0.00 0.00 3.16
2148 2376 1.742761 ACATCCATTCTGCCGACAAG 58.257 50.000 0.00 0.00 0.00 3.16
2149 2377 3.134623 AGATACATCCATTCTGCCGACAA 59.865 43.478 0.00 0.00 0.00 3.18
2150 2378 2.700371 AGATACATCCATTCTGCCGACA 59.300 45.455 0.00 0.00 0.00 4.35
2151 2379 3.393089 AGATACATCCATTCTGCCGAC 57.607 47.619 0.00 0.00 0.00 4.79
2152 2380 4.218635 GTCTAGATACATCCATTCTGCCGA 59.781 45.833 0.00 0.00 0.00 5.54
2153 2381 4.489810 GTCTAGATACATCCATTCTGCCG 58.510 47.826 0.00 0.00 0.00 5.69
2154 2382 4.021894 ACGTCTAGATACATCCATTCTGCC 60.022 45.833 0.00 0.00 0.00 4.85
2155 2383 5.127693 ACGTCTAGATACATCCATTCTGC 57.872 43.478 0.00 0.00 0.00 4.26
2156 2384 9.698309 AAAATACGTCTAGATACATCCATTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2190 2418 9.269415 GCAGAAATGCATAAAAATGAATGTTTC 57.731 29.630 0.00 0.00 34.41 2.78
2191 2419 7.958567 CGCAGAAATGCATAAAAATGAATGTTT 59.041 29.630 0.00 0.00 34.41 2.83
2192 2420 7.331440 TCGCAGAAATGCATAAAAATGAATGTT 59.669 29.630 0.00 0.00 34.41 2.71
2193 2421 6.812656 TCGCAGAAATGCATAAAAATGAATGT 59.187 30.769 0.00 0.00 34.41 2.71
2194 2422 7.114920 GTCGCAGAAATGCATAAAAATGAATG 58.885 34.615 0.00 0.00 39.69 2.67
2195 2423 6.812656 TGTCGCAGAAATGCATAAAAATGAAT 59.187 30.769 0.00 0.00 39.69 2.57
2196 2424 6.155136 TGTCGCAGAAATGCATAAAAATGAA 58.845 32.000 0.00 0.00 39.69 2.57
2197 2425 5.707931 TGTCGCAGAAATGCATAAAAATGA 58.292 33.333 0.00 0.00 39.69 2.57
2198 2426 6.089820 ACTTGTCGCAGAAATGCATAAAAATG 59.910 34.615 0.00 0.00 39.69 2.32
2199 2427 6.158598 ACTTGTCGCAGAAATGCATAAAAAT 58.841 32.000 0.00 0.00 39.69 1.82
2200 2428 5.527951 ACTTGTCGCAGAAATGCATAAAAA 58.472 33.333 0.00 0.00 39.69 1.94
2201 2429 5.119931 ACTTGTCGCAGAAATGCATAAAA 57.880 34.783 0.00 0.00 39.69 1.52
2202 2430 4.764679 ACTTGTCGCAGAAATGCATAAA 57.235 36.364 0.00 0.00 39.69 1.40
2203 2431 6.435430 AATACTTGTCGCAGAAATGCATAA 57.565 33.333 0.00 0.00 39.69 1.90
2204 2432 6.435430 AAATACTTGTCGCAGAAATGCATA 57.565 33.333 0.00 0.00 39.69 3.14
2205 2433 4.970662 AATACTTGTCGCAGAAATGCAT 57.029 36.364 0.00 0.00 39.69 3.96
2206 2434 4.764679 AAATACTTGTCGCAGAAATGCA 57.235 36.364 0.00 0.00 39.69 3.96
2207 2435 4.260656 CGAAAATACTTGTCGCAGAAATGC 59.739 41.667 0.00 0.00 39.69 3.56
2208 2436 4.788100 CCGAAAATACTTGTCGCAGAAATG 59.212 41.667 0.00 0.00 39.69 2.32
2209 2437 4.693566 TCCGAAAATACTTGTCGCAGAAAT 59.306 37.500 0.00 0.00 39.69 2.17
2210 2438 4.059511 TCCGAAAATACTTGTCGCAGAAA 58.940 39.130 0.00 0.00 39.69 2.52
2211 2439 3.430895 GTCCGAAAATACTTGTCGCAGAA 59.569 43.478 0.00 0.00 39.69 3.02
2212 2440 2.991190 GTCCGAAAATACTTGTCGCAGA 59.009 45.455 0.00 0.00 33.46 4.26
2213 2441 2.222508 CGTCCGAAAATACTTGTCGCAG 60.223 50.000 0.00 0.00 33.46 5.18
2214 2442 1.722464 CGTCCGAAAATACTTGTCGCA 59.278 47.619 0.00 0.00 33.46 5.10
2215 2443 1.060122 CCGTCCGAAAATACTTGTCGC 59.940 52.381 0.00 0.00 33.46 5.19
2216 2444 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2217 2445 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2218 2446 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2219 2447 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2220 2448 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2221 2449 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2222 2450 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2223 2451 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2224 2452 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2225 2453 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2226 2454 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2227 2455 1.479323 CAAATACTCCCTCCGTCCGAA 59.521 52.381 0.00 0.00 0.00 4.30
2228 2456 1.108776 CAAATACTCCCTCCGTCCGA 58.891 55.000 0.00 0.00 0.00 4.55
2229 2457 0.822164 ACAAATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2230 2458 3.345508 AAACAAATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
2231 2459 5.082251 AGTAAACAAATACTCCCTCCGTC 57.918 43.478 0.00 0.00 30.26 4.79
2232 2460 5.243207 CAAGTAAACAAATACTCCCTCCGT 58.757 41.667 0.00 0.00 35.09 4.69
2233 2461 4.094442 GCAAGTAAACAAATACTCCCTCCG 59.906 45.833 0.00 0.00 35.09 4.63
2234 2462 5.007682 TGCAAGTAAACAAATACTCCCTCC 58.992 41.667 0.00 0.00 35.09 4.30
2235 2463 5.472137 TGTGCAAGTAAACAAATACTCCCTC 59.528 40.000 0.00 0.00 35.09 4.30
2236 2464 5.381757 TGTGCAAGTAAACAAATACTCCCT 58.618 37.500 0.00 0.00 35.09 4.20
2237 2465 5.472137 TCTGTGCAAGTAAACAAATACTCCC 59.528 40.000 0.00 0.00 35.09 4.30
2238 2466 6.554334 TCTGTGCAAGTAAACAAATACTCC 57.446 37.500 0.00 0.00 35.09 3.85
2239 2467 8.289618 TGATTCTGTGCAAGTAAACAAATACTC 58.710 33.333 0.00 0.00 35.09 2.59
2240 2468 8.165239 TGATTCTGTGCAAGTAAACAAATACT 57.835 30.769 0.00 0.00 37.73 2.12
2241 2469 8.970691 ATGATTCTGTGCAAGTAAACAAATAC 57.029 30.769 0.00 0.00 0.00 1.89
2242 2470 9.013229 AGATGATTCTGTGCAAGTAAACAAATA 57.987 29.630 0.00 0.00 0.00 1.40
2243 2471 7.889469 AGATGATTCTGTGCAAGTAAACAAAT 58.111 30.769 0.00 0.00 0.00 2.32
2290 2518 7.324178 CAGGTCTCTAAGTTTGTGCTACTTAT 58.676 38.462 0.00 0.00 37.44 1.73
2310 2538 4.773323 AATGTAAGAGCAAAAGCAGGTC 57.227 40.909 0.00 0.00 0.00 3.85
2369 2597 3.253188 TCACAGCCTTTTCCTTTCAATCG 59.747 43.478 0.00 0.00 0.00 3.34
2432 2660 7.765695 TTCATTTTGCCAAGATTAAGTCTCT 57.234 32.000 0.00 0.00 35.67 3.10
2477 2705 1.213537 CTCATTTGCCCTGTTGCCG 59.786 57.895 0.00 0.00 0.00 5.69
2480 2708 0.675083 TGTGCTCATTTGCCCTGTTG 59.325 50.000 0.00 0.00 0.00 3.33
2606 2834 1.064017 AGTGGTGCCCAAAAGAGTTGA 60.064 47.619 0.00 0.00 34.18 3.18
2607 2835 1.402787 AGTGGTGCCCAAAAGAGTTG 58.597 50.000 0.00 0.00 34.18 3.16
2757 2985 6.942576 GCCCTCCTGCATATAAAGAATCTAAA 59.057 38.462 0.00 0.00 0.00 1.85
2873 3102 1.135315 CATGCTTGCACGGCAGTAC 59.865 57.895 16.80 0.00 43.15 2.73
2874 3103 2.039974 CCATGCTTGCACGGCAGTA 61.040 57.895 16.80 0.00 43.15 2.74
2877 3106 2.911509 AACCATGCTTGCACGGCA 60.912 55.556 14.62 14.62 44.05 5.69
3005 3234 4.956700 TGGGTTAGTGATCTCCTCTAACAG 59.043 45.833 20.41 0.00 46.11 3.16
3191 3420 6.385443 TCCTGAGGGAATATGGCCTATATAG 58.615 44.000 3.32 2.46 38.93 1.31
3193 3422 5.222870 CTCCTGAGGGAATATGGCCTATAT 58.777 45.833 3.32 3.00 41.69 0.86
3287 3520 9.229784 GTCTTGATTATGTGAAATAGCAACATG 57.770 33.333 0.00 0.00 0.00 3.21
3352 3585 8.439964 ACAAGTTACTCAAGGGGTAATAAGTA 57.560 34.615 0.00 0.00 32.78 2.24
3361 3594 6.702716 TGTAAAAACAAGTTACTCAAGGGG 57.297 37.500 0.00 0.00 33.46 4.79
3464 3736 5.985530 TGCCTCGTCAAATTATCTGATACTG 59.014 40.000 0.00 0.00 0.00 2.74
3710 3982 3.846588 AGGAGAATTTCTGGAACCAGCTA 59.153 43.478 15.20 6.59 43.31 3.32
3725 3997 8.945195 TTATGATTCCAATTGCATAGGAGAAT 57.055 30.769 0.00 1.86 32.11 2.40
3806 4080 7.448777 TCCAGTATGAATATGAGTGTAGGTCTC 59.551 40.741 0.00 0.00 39.69 3.36
3815 4089 6.873997 TCACGTTTCCAGTATGAATATGAGT 58.126 36.000 0.00 0.00 39.69 3.41
3836 4110 3.888930 TCTCCAAAACCATTTCCACTCAC 59.111 43.478 0.00 0.00 0.00 3.51
3855 4129 1.120530 TCGGGGATGCCTACTTTCTC 58.879 55.000 2.19 0.00 0.00 2.87
3887 4161 7.334171 CACATGACCTGTAAGTATTCAATGACA 59.666 37.037 0.00 0.00 35.91 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.