Multiple sequence alignment - TraesCS7B01G219600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G219600 chr7B 100.000 7713 0 0 1 7713 410851542 410843830 0.000000e+00 14244.0
1 TraesCS7B01G219600 chr7B 94.712 208 5 4 5560 5767 68862214 68862013 1.250000e-82 318.0
2 TraesCS7B01G219600 chr7B 100.000 72 0 0 2495 2566 311636044 311635973 4.860000e-27 134.0
3 TraesCS7B01G219600 chr7B 92.941 85 5 1 2490 2573 14459549 14459633 1.050000e-23 122.0
4 TraesCS7B01G219600 chr7D 98.052 2824 30 9 2763 5562 401151861 401149039 0.000000e+00 4887.0
5 TraesCS7B01G219600 chr7D 96.660 2006 26 6 5748 7713 401149056 401147052 0.000000e+00 3295.0
6 TraesCS7B01G219600 chr7D 98.755 1847 18 3 658 2499 401153765 401151919 0.000000e+00 3278.0
7 TraesCS7B01G219600 chr7D 83.954 349 35 5 3 331 401154274 401153927 1.620000e-81 315.0
8 TraesCS7B01G219600 chr7D 91.304 161 14 0 7066 7226 454079251 454079411 3.620000e-53 220.0
9 TraesCS7B01G219600 chr7D 95.050 101 5 0 568 668 345777526 345777426 8.010000e-35 159.0
10 TraesCS7B01G219600 chr7D 97.500 80 2 0 2561 2640 401151938 401151859 3.750000e-28 137.0
11 TraesCS7B01G219600 chr7A 92.077 1931 93 21 5748 7636 459007724 459005812 0.000000e+00 2663.0
12 TraesCS7B01G219600 chr7A 89.326 1883 126 27 658 2499 459012722 459010874 0.000000e+00 2294.0
13 TraesCS7B01G219600 chr7A 88.288 1571 111 31 2765 4310 459010812 459009290 0.000000e+00 1814.0
14 TraesCS7B01G219600 chr7A 93.617 611 28 5 4776 5384 459008452 459007851 0.000000e+00 902.0
15 TraesCS7B01G219600 chr7A 98.387 186 3 0 5560 5745 182376846 182377031 2.080000e-85 327.0
16 TraesCS7B01G219600 chr7A 91.489 235 16 3 203 435 459012986 459012754 3.470000e-83 320.0
17 TraesCS7B01G219600 chr7A 90.244 205 19 1 3 206 459013226 459013022 4.590000e-67 267.0
18 TraesCS7B01G219600 chr7A 92.683 164 12 0 4482 4645 459009267 459009104 3.600000e-58 237.0
19 TraesCS7B01G219600 chr7A 96.212 132 5 0 4630 4761 459008917 459008786 4.690000e-52 217.0
20 TraesCS7B01G219600 chr7A 96.154 78 2 1 2495 2572 199100621 199100697 8.130000e-25 126.0
21 TraesCS7B01G219600 chr7A 93.750 80 5 0 2561 2640 459010893 459010814 3.780000e-23 121.0
22 TraesCS7B01G219600 chr7A 82.443 131 6 7 6955 7068 602743811 602743941 1.770000e-16 99.0
23 TraesCS7B01G219600 chr7A 80.469 128 8 7 6958 7068 654914269 654914142 1.780000e-11 82.4
24 TraesCS7B01G219600 chr3A 97.938 194 4 0 5553 5746 259336865 259337058 3.450000e-88 337.0
25 TraesCS7B01G219600 chr3B 98.413 189 3 0 5560 5748 729209739 729209927 4.460000e-87 333.0
26 TraesCS7B01G219600 chr3B 99.213 127 1 0 2639 2765 582286071 582285945 6.020000e-56 230.0
27 TraesCS7B01G219600 chr2A 97.895 190 2 1 5560 5749 433416153 433416340 2.080000e-85 327.0
28 TraesCS7B01G219600 chr2A 96.923 195 4 2 5560 5752 116436843 116437037 7.460000e-85 326.0
29 TraesCS7B01G219600 chr2A 97.674 129 3 0 2637 2765 166858097 166857969 1.010000e-53 222.0
30 TraesCS7B01G219600 chr2A 85.799 169 19 3 7066 7230 385275054 385274887 2.860000e-39 174.0
31 TraesCS7B01G219600 chr2A 86.061 165 13 7 7072 7230 129744263 129744103 1.330000e-37 169.0
32 TraesCS7B01G219600 chr2A 84.795 171 17 7 7066 7230 280680 280513 6.190000e-36 163.0
33 TraesCS7B01G219600 chr2A 85.366 164 14 7 7073 7230 312100960 312101119 2.230000e-35 161.0
34 TraesCS7B01G219600 chr2A 83.708 178 20 8 7066 7237 587332688 587332862 8.010000e-35 159.0
35 TraesCS7B01G219600 chr2A 83.871 62 7 3 5529 5588 238717966 238717906 1.000000e-03 56.5
36 TraesCS7B01G219600 chr6D 97.884 189 3 1 5560 5747 128903062 128903250 7.460000e-85 326.0
37 TraesCS7B01G219600 chr6D 86.207 116 13 3 430 545 81224788 81224676 1.050000e-23 122.0
38 TraesCS7B01G219600 chr6D 84.685 111 15 2 434 544 81224677 81224785 8.180000e-20 110.0
39 TraesCS7B01G219600 chr1B 96.891 193 4 2 5546 5738 33923257 33923067 9.660000e-84 322.0
40 TraesCS7B01G219600 chr1B 85.345 116 15 2 434 549 463525403 463525516 1.360000e-22 119.0
41 TraesCS7B01G219600 chr1B 82.400 125 15 4 428 545 32458231 32458355 1.370000e-17 102.0
42 TraesCS7B01G219600 chr1B 89.157 83 6 2 6960 7040 532161545 532161626 4.930000e-17 100.0
43 TraesCS7B01G219600 chr6B 95.939 197 7 1 5553 5749 697123460 697123655 1.250000e-82 318.0
44 TraesCS7B01G219600 chr6B 98.438 128 2 0 2638 2765 495807709 495807582 7.790000e-55 226.0
45 TraesCS7B01G219600 chr6B 92.857 56 3 1 7229 7284 199935469 199935415 6.420000e-11 80.5
46 TraesCS7B01G219600 chr6B 97.143 35 1 0 7037 7071 636182756 636182722 8.360000e-05 60.2
47 TraesCS7B01G219600 chr5D 94.545 165 8 1 7066 7229 529218323 529218159 3.570000e-63 254.0
48 TraesCS7B01G219600 chr5D 90.854 164 14 1 7067 7230 377988158 377987996 1.300000e-52 219.0
49 TraesCS7B01G219600 chr5D 93.458 107 5 2 559 664 331118934 331119039 2.880000e-34 158.0
50 TraesCS7B01G219600 chr5D 91.071 112 6 3 549 659 57225944 57226052 1.730000e-31 148.0
51 TraesCS7B01G219600 chr5D 85.211 142 13 7 518 655 201522839 201522976 1.040000e-28 139.0
52 TraesCS7B01G219600 chr2D 92.121 165 13 0 7066 7230 134301645 134301481 4.650000e-57 233.0
53 TraesCS7B01G219600 chr2D 85.841 113 14 2 432 544 55399282 55399172 1.360000e-22 119.0
54 TraesCS7B01G219600 chr2D 85.217 115 14 3 433 544 604280659 604280773 1.760000e-21 115.0
55 TraesCS7B01G219600 chr4D 92.547 161 12 0 7066 7226 34661684 34661524 1.670000e-56 231.0
56 TraesCS7B01G219600 chr4D 86.726 113 12 3 433 545 362785446 362785337 1.050000e-23 122.0
57 TraesCS7B01G219600 chr5A 91.925 161 13 0 7066 7226 320214248 320214408 7.790000e-55 226.0
58 TraesCS7B01G219600 chr5A 96.970 132 4 0 2638 2769 81476813 81476682 1.010000e-53 222.0
59 TraesCS7B01G219600 chr5A 96.947 131 4 0 2639 2769 154345533 154345663 3.620000e-53 220.0
60 TraesCS7B01G219600 chr5A 81.890 127 6 7 6962 7071 652643386 652643260 2.960000e-14 91.6
61 TraesCS7B01G219600 chr5A 80.189 106 4 7 6979 7067 51477785 51477680 6.460000e-06 63.9
62 TraesCS7B01G219600 chr6A 98.425 127 2 0 2639 2765 1814905 1815031 2.800000e-54 224.0
63 TraesCS7B01G219600 chr6A 97.872 94 0 1 562 655 337716826 337716917 2.230000e-35 161.0
64 TraesCS7B01G219600 chr6A 97.802 91 2 0 571 661 447160854 447160944 2.880000e-34 158.0
65 TraesCS7B01G219600 chr6A 100.000 72 0 0 2491 2562 82094721 82094792 4.860000e-27 134.0
66 TraesCS7B01G219600 chr6A 97.436 78 2 0 2495 2572 162860213 162860290 4.860000e-27 134.0
67 TraesCS7B01G219600 chr6A 81.707 164 24 6 497 658 172113338 172113179 1.750000e-26 132.0
68 TraesCS7B01G219600 chr6A 97.368 76 1 1 2488 2562 73641663 73641738 2.260000e-25 128.0
69 TraesCS7B01G219600 chr6A 94.643 56 2 1 7229 7284 135448767 135448713 1.380000e-12 86.1
70 TraesCS7B01G219600 chr4A 98.425 127 2 0 2639 2765 731676504 731676378 2.800000e-54 224.0
71 TraesCS7B01G219600 chr4A 93.151 146 7 3 2637 2780 522041324 522041468 2.180000e-50 211.0
72 TraesCS7B01G219600 chr4A 89.855 69 4 2 6974 7040 731664168 731664235 1.380000e-12 86.1
73 TraesCS7B01G219600 chr4A 78.906 128 8 10 6959 7068 725132552 725132678 1.390000e-07 69.4
74 TraesCS7B01G219600 chr2B 92.357 157 12 0 7067 7223 608226881 608226725 2.800000e-54 224.0
75 TraesCS7B01G219600 chr2B 98.425 127 2 0 2639 2765 627325099 627325225 2.800000e-54 224.0
76 TraesCS7B01G219600 chr2B 98.630 73 1 0 2495 2567 368306230 368306158 6.280000e-26 130.0
77 TraesCS7B01G219600 chr2B 98.630 73 0 1 2495 2566 126951994 126952066 2.260000e-25 128.0
78 TraesCS7B01G219600 chr4B 97.895 95 0 2 561 655 636918975 636919067 6.190000e-36 163.0
79 TraesCS7B01G219600 chr5B 95.833 96 4 0 570 665 331307490 331307395 1.040000e-33 156.0
80 TraesCS7B01G219600 chr5B 96.154 78 2 1 2488 2564 431806732 431806655 8.130000e-25 126.0
81 TraesCS7B01G219600 chr5B 85.217 115 14 3 434 546 319908873 319908986 1.760000e-21 115.0
82 TraesCS7B01G219600 chr1D 83.051 118 17 2 434 551 481695272 481695158 3.810000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G219600 chr7B 410843830 410851542 7712 True 14244.000000 14244 100.000000 1 7713 1 chr7B.!!$R3 7712
1 TraesCS7B01G219600 chr7D 401147052 401154274 7222 True 2382.400000 4887 94.984200 3 7713 5 chr7D.!!$R2 7710
2 TraesCS7B01G219600 chr7A 459005812 459013226 7414 True 981.666667 2663 91.965111 3 7636 9 chr7A.!!$R2 7633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.034767 ATGACCGTCGACTAGGTGGA 60.035 55.000 18.39 6.63 41.51 4.02 F
125 126 0.404040 CATGTGTGTAGGGGGTTGGT 59.596 55.000 0.00 0.00 0.00 3.67 F
181 183 0.461548 GTGCACATCCTCAGGATCGA 59.538 55.000 13.17 0.00 40.98 3.59 F
192 194 0.741326 CAGGATCGATGTGGACGTCT 59.259 55.000 16.46 0.00 0.00 4.18 F
236 277 1.136336 GTGACACTTTCGGCGATTCAC 60.136 52.381 11.76 14.25 0.00 3.18 F
1636 1719 1.198759 TTAAGGCCTGCTCGGACCTT 61.199 55.000 5.69 17.85 44.54 3.50 F
2570 2682 0.105593 TTGCCCTTTTTGATGCGCAA 59.894 45.000 17.11 0.00 34.08 4.85 F
2649 2761 0.106619 CTAGCTGGTACTCCCTCCGT 60.107 60.000 0.00 0.00 0.00 4.69 F
2650 2762 0.333993 TAGCTGGTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44 F
2654 2766 0.406750 TGGTACTCCCTCCGTTCTGA 59.593 55.000 0.00 0.00 0.00 3.27 F
2655 2767 1.203087 TGGTACTCCCTCCGTTCTGAA 60.203 52.381 0.00 0.00 0.00 3.02 F
2656 2768 2.108970 GGTACTCCCTCCGTTCTGAAT 58.891 52.381 0.00 0.00 0.00 2.57 F
5489 6165 2.260844 TGGCCTTTTCAGAGACACAG 57.739 50.000 3.32 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1193 1266 1.565759 AGCAAATGGAGCATAGGGACA 59.434 47.619 0.00 0.0 0.00 4.02 R
1763 1848 4.334759 CCATCTTTCTTGTGACCATAGCAG 59.665 45.833 0.00 0.0 0.00 4.24 R
2127 2212 5.070981 TCCATTTGTGCAATAGGTTTCCAAA 59.929 36.000 0.00 0.0 0.00 3.28 R
2289 2375 1.472480 GACAAGGCGTACGTAACCCTA 59.528 52.381 17.90 0.0 30.95 3.53 R
2502 2614 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.0 46.04 4.79 R
2764 2876 0.034477 CCAAACCGGACCTGCCTATT 60.034 55.000 9.46 0.0 36.56 1.73 R
3817 3946 2.945080 GTAACCTATTACCAGGCCCC 57.055 55.000 0.00 0.0 39.53 5.80 R
4157 4303 3.127548 ACTCACTGCCAAATTCAATAGCG 59.872 43.478 0.00 0.0 0.00 4.26 R
4477 4625 4.473199 GTCAAAACGGAAAATGCTACTCC 58.527 43.478 0.00 0.0 0.00 3.85 R
5005 5675 4.038522 TCAAGCCGATTTCAAAATGTCCAA 59.961 37.500 0.00 0.0 0.00 3.53 R
5489 6165 3.825328 AGGATGTGCTCCCAATCAATAC 58.175 45.455 0.00 0.0 46.27 1.89 R
5565 6242 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.2 39.32 4.70 R
6977 7679 1.059913 CAAGTGGGGAGGACTTCACT 58.940 55.000 0.00 0.0 41.59 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.774894 TTGGCTTTGGTCGCTAGGGT 61.775 55.000 6.70 0.00 0.00 4.34
45 46 2.019249 CTAGGGTAACATGACCGTCGA 58.981 52.381 0.00 0.00 40.76 4.20
54 55 0.034767 ATGACCGTCGACTAGGTGGA 60.035 55.000 18.39 6.63 41.51 4.02
119 120 3.491619 CGAAGATCTCATGTGTGTAGGGG 60.492 52.174 0.00 0.00 0.00 4.79
125 126 0.404040 CATGTGTGTAGGGGGTTGGT 59.596 55.000 0.00 0.00 0.00 3.67
168 170 2.503331 CCATCAACTAACTGGTGCACA 58.497 47.619 20.43 3.92 32.28 4.57
169 171 3.084039 CCATCAACTAACTGGTGCACAT 58.916 45.455 20.43 4.03 32.28 3.21
174 176 1.977854 ACTAACTGGTGCACATCCTCA 59.022 47.619 20.43 5.84 0.00 3.86
177 179 0.837691 ACTGGTGCACATCCTCAGGA 60.838 55.000 20.43 0.00 35.55 3.86
178 180 0.545171 CTGGTGCACATCCTCAGGAT 59.455 55.000 20.43 0.00 44.21 3.24
181 183 0.461548 GTGCACATCCTCAGGATCGA 59.538 55.000 13.17 0.00 40.98 3.59
192 194 0.741326 CAGGATCGATGTGGACGTCT 59.259 55.000 16.46 0.00 0.00 4.18
236 277 1.136336 GTGACACTTTCGGCGATTCAC 60.136 52.381 11.76 14.25 0.00 3.18
283 324 6.799925 CGTGTGCGTATATTGTAGATGTATCA 59.200 38.462 0.00 0.00 0.00 2.15
399 464 7.497925 AGAAACAGTTCATCTCCTTTTACAC 57.502 36.000 0.00 0.00 36.09 2.90
409 474 8.014070 TCATCTCCTTTTACACCGATTATGTA 57.986 34.615 0.00 0.00 0.00 2.29
413 478 9.923143 TCTCCTTTTACACCGATTATGTATATG 57.077 33.333 0.00 0.00 32.70 1.78
437 502 8.638685 TGTTGTGAACTGTAAACTTAGTACTC 57.361 34.615 0.00 0.00 0.00 2.59
438 503 7.707893 TGTTGTGAACTGTAAACTTAGTACTCC 59.292 37.037 0.00 0.00 0.00 3.85
439 504 6.752168 TGTGAACTGTAAACTTAGTACTCCC 58.248 40.000 0.00 0.00 0.00 4.30
440 505 6.552350 TGTGAACTGTAAACTTAGTACTCCCT 59.448 38.462 0.00 0.00 0.00 4.20
441 506 7.089538 GTGAACTGTAAACTTAGTACTCCCTC 58.910 42.308 0.00 0.00 0.00 4.30
442 507 6.210185 TGAACTGTAAACTTAGTACTCCCTCC 59.790 42.308 0.00 0.00 0.00 4.30
443 508 4.704057 ACTGTAAACTTAGTACTCCCTCCG 59.296 45.833 0.00 0.00 0.00 4.63
444 509 4.666512 TGTAAACTTAGTACTCCCTCCGT 58.333 43.478 0.00 0.00 0.00 4.69
445 510 5.079643 TGTAAACTTAGTACTCCCTCCGTT 58.920 41.667 0.00 0.00 0.00 4.44
446 511 5.539955 TGTAAACTTAGTACTCCCTCCGTTT 59.460 40.000 0.00 4.33 0.00 3.60
447 512 4.797800 AACTTAGTACTCCCTCCGTTTC 57.202 45.455 0.00 0.00 0.00 2.78
448 513 3.771216 ACTTAGTACTCCCTCCGTTTCA 58.229 45.455 0.00 0.00 0.00 2.69
449 514 4.154942 ACTTAGTACTCCCTCCGTTTCAA 58.845 43.478 0.00 0.00 0.00 2.69
450 515 4.590222 ACTTAGTACTCCCTCCGTTTCAAA 59.410 41.667 0.00 0.00 0.00 2.69
451 516 5.070847 ACTTAGTACTCCCTCCGTTTCAAAA 59.929 40.000 0.00 0.00 0.00 2.44
452 517 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
453 518 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
454 519 5.731591 AGTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
455 520 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
456 521 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
457 522 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
458 523 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
459 524 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
460 525 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
461 526 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
462 527 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
463 528 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
464 529 5.949354 TCCGTTTCAAAATAGATGACCCAAT 59.051 36.000 0.00 0.00 0.00 3.16
465 530 6.435904 TCCGTTTCAAAATAGATGACCCAATT 59.564 34.615 0.00 0.00 0.00 2.32
466 531 7.039363 TCCGTTTCAAAATAGATGACCCAATTT 60.039 33.333 0.00 0.00 0.00 1.82
467 532 7.602265 CCGTTTCAAAATAGATGACCCAATTTT 59.398 33.333 0.00 0.00 33.07 1.82
468 533 8.434661 CGTTTCAAAATAGATGACCCAATTTTG 58.565 33.333 11.32 11.32 44.73 2.44
469 534 9.271828 GTTTCAAAATAGATGACCCAATTTTGT 57.728 29.630 15.19 0.00 44.18 2.83
534 599 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
535 600 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
536 601 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
537 602 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
538 603 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
539 604 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
540 605 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
541 606 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
542 607 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
543 608 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
559 627 6.264970 GGAGGGAGTAGTACGTAAGATTGATT 59.735 42.308 0.00 0.00 43.62 2.57
576 644 9.628500 AAGATTGATTGTAATTTAGGTACTCCC 57.372 33.333 0.00 0.00 41.75 4.30
578 646 9.274206 GATTGATTGTAATTTAGGTACTCCCTC 57.726 37.037 0.00 0.00 44.81 4.30
579 647 7.989947 TGATTGTAATTTAGGTACTCCCTCT 57.010 36.000 0.00 0.00 44.81 3.69
580 648 7.792032 TGATTGTAATTTAGGTACTCCCTCTG 58.208 38.462 0.00 0.00 44.81 3.35
581 649 7.402071 TGATTGTAATTTAGGTACTCCCTCTGT 59.598 37.037 0.00 0.00 44.81 3.41
582 650 8.849543 ATTGTAATTTAGGTACTCCCTCTGTA 57.150 34.615 0.00 0.00 44.81 2.74
583 651 8.669055 TTGTAATTTAGGTACTCCCTCTGTAA 57.331 34.615 0.00 0.00 44.81 2.41
584 652 8.669055 TGTAATTTAGGTACTCCCTCTGTAAA 57.331 34.615 0.00 0.00 44.81 2.01
585 653 8.534496 TGTAATTTAGGTACTCCCTCTGTAAAC 58.466 37.037 0.00 0.00 44.81 2.01
586 654 7.809880 AATTTAGGTACTCCCTCTGTAAACT 57.190 36.000 0.00 0.00 44.81 2.66
587 655 8.906238 AATTTAGGTACTCCCTCTGTAAACTA 57.094 34.615 0.00 0.00 44.81 2.24
588 656 8.906238 ATTTAGGTACTCCCTCTGTAAACTAA 57.094 34.615 0.00 0.00 44.81 2.24
589 657 8.906238 TTTAGGTACTCCCTCTGTAAACTAAT 57.094 34.615 0.00 0.00 44.81 1.73
590 658 9.995594 TTTAGGTACTCCCTCTGTAAACTAATA 57.004 33.333 0.00 0.00 44.81 0.98
597 665 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
599 667 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
631 699 6.562518 ACTAAAGTAGTGATCTAAACGCTCC 58.437 40.000 0.00 0.00 37.69 4.70
632 700 5.662674 AAAGTAGTGATCTAAACGCTCCT 57.337 39.130 0.00 0.00 0.00 3.69
633 701 6.770746 AAAGTAGTGATCTAAACGCTCCTA 57.229 37.500 0.00 0.00 0.00 2.94
634 702 6.963083 AAGTAGTGATCTAAACGCTCCTAT 57.037 37.500 0.00 0.00 0.00 2.57
635 703 8.461249 AAAGTAGTGATCTAAACGCTCCTATA 57.539 34.615 0.00 0.00 0.00 1.31
636 704 8.638629 AAGTAGTGATCTAAACGCTCCTATAT 57.361 34.615 0.00 0.00 0.00 0.86
637 705 8.638629 AGTAGTGATCTAAACGCTCCTATATT 57.361 34.615 0.00 0.00 0.00 1.28
638 706 9.736414 AGTAGTGATCTAAACGCTCCTATATTA 57.264 33.333 0.00 0.00 0.00 0.98
639 707 9.991388 GTAGTGATCTAAACGCTCCTATATTAG 57.009 37.037 0.00 0.00 0.00 1.73
640 708 8.638629 AGTGATCTAAACGCTCCTATATTAGT 57.361 34.615 0.00 0.00 0.00 2.24
641 709 9.080097 AGTGATCTAAACGCTCCTATATTAGTT 57.920 33.333 0.00 0.00 0.00 2.24
642 710 9.694137 GTGATCTAAACGCTCCTATATTAGTTT 57.306 33.333 0.00 0.00 36.11 2.66
645 713 9.837525 ATCTAAACGCTCCTATATTAGTTTACG 57.162 33.333 0.00 0.00 34.29 3.18
646 714 8.292448 TCTAAACGCTCCTATATTAGTTTACGG 58.708 37.037 0.00 0.00 34.29 4.02
647 715 6.639632 AACGCTCCTATATTAGTTTACGGA 57.360 37.500 0.00 0.00 0.00 4.69
648 716 6.251655 ACGCTCCTATATTAGTTTACGGAG 57.748 41.667 0.00 0.00 39.55 4.63
649 717 5.182760 ACGCTCCTATATTAGTTTACGGAGG 59.817 44.000 0.00 0.00 37.59 4.30
650 718 5.392811 CGCTCCTATATTAGTTTACGGAGGG 60.393 48.000 0.00 0.00 41.54 4.30
651 719 5.713861 GCTCCTATATTAGTTTACGGAGGGA 59.286 44.000 0.00 0.00 37.59 4.20
652 720 6.127675 GCTCCTATATTAGTTTACGGAGGGAG 60.128 46.154 0.00 0.00 37.59 4.30
653 721 6.856757 TCCTATATTAGTTTACGGAGGGAGT 58.143 40.000 0.00 0.00 0.00 3.85
654 722 7.988937 TCCTATATTAGTTTACGGAGGGAGTA 58.011 38.462 0.00 0.00 0.00 2.59
655 723 8.618385 TCCTATATTAGTTTACGGAGGGAGTAT 58.382 37.037 0.00 0.00 0.00 2.12
656 724 9.252635 CCTATATTAGTTTACGGAGGGAGTATT 57.747 37.037 0.00 0.00 0.00 1.89
731 802 2.684881 CCGAGCTGCAAATATTTGGTCT 59.315 45.455 25.61 13.04 38.57 3.85
733 804 4.516698 CCGAGCTGCAAATATTTGGTCTAT 59.483 41.667 25.61 4.64 38.57 1.98
788 859 5.220854 CCATAACGTCTGAATTTTAGCCCTG 60.221 44.000 0.00 0.00 0.00 4.45
1635 1718 1.612442 TTAAGGCCTGCTCGGACCT 60.612 57.895 5.69 0.00 44.54 3.85
1636 1719 1.198759 TTAAGGCCTGCTCGGACCTT 61.199 55.000 5.69 17.85 44.54 3.50
1966 2051 7.138736 TGAACTGTTCACTTGCTAAAATTAGC 58.861 34.615 18.69 16.38 44.28 3.09
2127 2212 8.143193 TGAAGTGAATCACAAATGTGCTTTTAT 58.857 29.630 16.38 0.00 45.25 1.40
2225 2310 8.459521 TGCAACCATATTTTATTTCACGAAAG 57.540 30.769 0.00 0.00 33.32 2.62
2289 2375 9.829507 TGTCAAAATCAACATAGAAATGGTTTT 57.170 25.926 0.00 0.00 37.43 2.43
2499 2611 3.968096 CGTTGATGCGCAATATACCAAAG 59.032 43.478 17.11 10.29 39.03 2.77
2500 2612 4.495679 CGTTGATGCGCAATATACCAAAGT 60.496 41.667 17.11 0.00 39.03 2.66
2501 2613 4.550577 TGATGCGCAATATACCAAAGTG 57.449 40.909 17.11 0.00 0.00 3.16
2502 2614 3.314913 TGATGCGCAATATACCAAAGTGG 59.685 43.478 17.11 0.00 45.02 4.00
2503 2615 8.547816 GTTGATGCGCAATATACCAAAGTGGT 62.548 42.308 17.11 5.09 45.67 4.16
2511 2623 3.157680 CCAAAGTGGTCGGACCCT 58.842 61.111 23.81 16.82 37.50 4.34
2512 2624 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2513 2625 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2514 2626 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2515 2627 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2516 2628 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2517 2629 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2518 2630 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2519 2631 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2520 2632 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2521 2633 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2522 2634 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2523 2635 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2524 2636 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2525 2637 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2526 2638 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2527 2639 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2552 2664 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2553 2665 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2554 2666 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2555 2667 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2556 2668 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2557 2669 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2558 2670 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2559 2671 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2560 2672 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2561 2673 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2562 2674 0.532640 GCACCAGGTTGCCCTTTTTG 60.533 55.000 0.00 0.00 39.89 2.44
2563 2675 1.118838 CACCAGGTTGCCCTTTTTGA 58.881 50.000 0.00 0.00 39.89 2.69
2564 2676 1.693606 CACCAGGTTGCCCTTTTTGAT 59.306 47.619 0.00 0.00 39.89 2.57
2565 2677 1.693606 ACCAGGTTGCCCTTTTTGATG 59.306 47.619 0.00 0.00 39.89 3.07
2566 2678 1.608801 CCAGGTTGCCCTTTTTGATGC 60.609 52.381 0.00 0.00 39.89 3.91
2567 2679 0.318120 AGGTTGCCCTTTTTGATGCG 59.682 50.000 0.00 0.00 38.13 4.73
2568 2680 1.291184 GGTTGCCCTTTTTGATGCGC 61.291 55.000 0.00 0.00 0.00 6.09
2569 2681 0.599728 GTTGCCCTTTTTGATGCGCA 60.600 50.000 14.96 14.96 0.00 6.09
2570 2682 0.105593 TTGCCCTTTTTGATGCGCAA 59.894 45.000 17.11 0.00 34.08 4.85
2571 2683 0.321021 TGCCCTTTTTGATGCGCAAT 59.679 45.000 17.11 2.42 36.15 3.56
2572 2684 1.547820 TGCCCTTTTTGATGCGCAATA 59.452 42.857 17.11 2.81 36.15 1.90
2573 2685 1.926510 GCCCTTTTTGATGCGCAATAC 59.073 47.619 17.11 10.06 36.15 1.89
2574 2686 2.673610 GCCCTTTTTGATGCGCAATACA 60.674 45.455 17.11 12.87 36.15 2.29
2575 2687 2.923020 CCCTTTTTGATGCGCAATACAC 59.077 45.455 17.11 4.53 36.15 2.90
2576 2688 2.923020 CCTTTTTGATGCGCAATACACC 59.077 45.455 17.11 0.00 36.15 4.16
2577 2689 3.573598 CTTTTTGATGCGCAATACACCA 58.426 40.909 17.11 2.88 36.15 4.17
2578 2690 3.650070 TTTTGATGCGCAATACACCAA 57.350 38.095 17.11 9.24 36.15 3.67
2579 2691 3.650070 TTTGATGCGCAATACACCAAA 57.350 38.095 17.11 14.54 36.15 3.28
2640 2752 1.348036 CTATTGCCCCCTAGCTGGTAC 59.652 57.143 0.00 0.00 0.00 3.34
2641 2753 0.327576 ATTGCCCCCTAGCTGGTACT 60.328 55.000 0.00 0.00 0.00 2.73
2642 2754 0.981277 TTGCCCCCTAGCTGGTACTC 60.981 60.000 0.00 0.00 0.00 2.59
2643 2755 2.141448 GCCCCCTAGCTGGTACTCC 61.141 68.421 0.00 0.00 0.00 3.85
2644 2756 1.459730 CCCCCTAGCTGGTACTCCC 60.460 68.421 0.00 0.00 0.00 4.30
2645 2757 1.627019 CCCCTAGCTGGTACTCCCT 59.373 63.158 0.00 0.00 0.00 4.20
2646 2758 0.470268 CCCCTAGCTGGTACTCCCTC 60.470 65.000 0.00 0.00 0.00 4.30
2648 2760 0.824182 CCTAGCTGGTACTCCCTCCG 60.824 65.000 0.00 0.00 0.00 4.63
2649 2761 0.106619 CTAGCTGGTACTCCCTCCGT 60.107 60.000 0.00 0.00 0.00 4.69
2650 2762 0.333993 TAGCTGGTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
2651 2763 0.971447 AGCTGGTACTCCCTCCGTTC 60.971 60.000 0.00 0.00 0.00 3.95
2652 2764 0.971447 GCTGGTACTCCCTCCGTTCT 60.971 60.000 0.00 0.00 0.00 3.01
2653 2765 0.818296 CTGGTACTCCCTCCGTTCTG 59.182 60.000 0.00 0.00 0.00 3.02
2654 2766 0.406750 TGGTACTCCCTCCGTTCTGA 59.593 55.000 0.00 0.00 0.00 3.27
2655 2767 1.203087 TGGTACTCCCTCCGTTCTGAA 60.203 52.381 0.00 0.00 0.00 3.02
2656 2768 2.108970 GGTACTCCCTCCGTTCTGAAT 58.891 52.381 0.00 0.00 0.00 2.57
2657 2769 2.500504 GGTACTCCCTCCGTTCTGAATT 59.499 50.000 0.00 0.00 0.00 2.17
2658 2770 3.703052 GGTACTCCCTCCGTTCTGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
2659 2771 4.202131 GGTACTCCCTCCGTTCTGAATTAG 60.202 50.000 0.00 0.00 0.00 1.73
2660 2772 3.442076 ACTCCCTCCGTTCTGAATTAGT 58.558 45.455 0.00 0.00 0.00 2.24
2661 2773 3.838903 ACTCCCTCCGTTCTGAATTAGTT 59.161 43.478 0.00 0.00 0.00 2.24
2662 2774 4.184629 CTCCCTCCGTTCTGAATTAGTTG 58.815 47.826 0.00 0.00 0.00 3.16
2663 2775 3.581332 TCCCTCCGTTCTGAATTAGTTGT 59.419 43.478 0.00 0.00 0.00 3.32
2664 2776 3.933332 CCCTCCGTTCTGAATTAGTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2665 2777 4.322801 CCCTCCGTTCTGAATTAGTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2666 2778 5.238583 CCTCCGTTCTGAATTAGTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
2667 2779 5.120830 CCTCCGTTCTGAATTAGTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
2668 2780 4.994852 TCCGTTCTGAATTAGTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
2669 2781 4.994852 CCGTTCTGAATTAGTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
2670 2782 5.643777 CCGTTCTGAATTAGTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
2671 2783 6.149474 CCGTTCTGAATTAGTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
2672 2784 7.308589 CCGTTCTGAATTAGTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2673 2785 7.535258 CGTTCTGAATTAGTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
2674 2786 8.352942 GTTCTGAATTAGTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2675 2787 8.099364 TCTGAATTAGTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
2676 2788 7.939039 TCTGAATTAGTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
2677 2789 9.219603 CTGAATTAGTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
2678 2790 9.219603 TGAATTAGTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
2679 2791 9.436957 GAATTAGTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2680 2792 9.965902 AATTAGTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2682 2794 9.871238 TTAGTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2683 2795 7.036220 AGTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2684 2796 6.769134 TGTCTTGGATTTGTCTAGATACGA 57.231 37.500 0.00 0.00 0.00 3.43
2685 2797 7.165460 TGTCTTGGATTTGTCTAGATACGAA 57.835 36.000 0.00 0.00 0.00 3.85
2686 2798 7.782049 TGTCTTGGATTTGTCTAGATACGAAT 58.218 34.615 0.00 0.00 36.39 3.34
2687 2799 7.706607 TGTCTTGGATTTGTCTAGATACGAATG 59.293 37.037 0.00 0.00 34.30 2.67
2688 2800 7.707035 GTCTTGGATTTGTCTAGATACGAATGT 59.293 37.037 0.00 0.00 34.30 2.71
2689 2801 8.909923 TCTTGGATTTGTCTAGATACGAATGTA 58.090 33.333 0.00 0.00 34.30 2.29
2690 2802 9.698309 CTTGGATTTGTCTAGATACGAATGTAT 57.302 33.333 0.00 0.00 43.97 2.29
2707 2819 9.737427 ACGAATGTATCTAGACTCATTTTAGTG 57.263 33.333 18.84 12.17 31.87 2.74
2708 2820 8.695284 CGAATGTATCTAGACTCATTTTAGTGC 58.305 37.037 18.84 9.15 31.87 4.40
2709 2821 9.757227 GAATGTATCTAGACTCATTTTAGTGCT 57.243 33.333 18.84 2.29 31.87 4.40
2712 2824 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
2716 2828 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
2717 2829 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
2718 2830 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
2719 2831 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
2720 2832 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
2721 2833 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
2722 2834 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
2723 2835 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
2735 2847 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
2736 2848 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
2737 2849 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
2738 2850 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
2739 2851 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
2740 2852 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
2741 2853 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
2742 2854 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2743 2855 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2744 2856 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
2755 2867 9.746711 CAAATCTAAGACAAGTAATTCAGAACG 57.253 33.333 0.00 0.00 0.00 3.95
2756 2868 8.480643 AATCTAAGACAAGTAATTCAGAACGG 57.519 34.615 0.00 0.00 0.00 4.44
2757 2869 7.223260 TCTAAGACAAGTAATTCAGAACGGA 57.777 36.000 0.00 0.00 0.00 4.69
2758 2870 7.313646 TCTAAGACAAGTAATTCAGAACGGAG 58.686 38.462 0.00 0.00 0.00 4.63
2759 2871 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
2760 2872 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2761 2873 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2762 2874 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2763 2875 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2764 2876 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2861 2973 8.600449 AACTAGTGCAAAGCTATATGATTCTC 57.400 34.615 0.00 0.00 0.00 2.87
2902 3014 3.951775 AGCTTATAGCCATTCCTCTCG 57.048 47.619 0.00 0.00 43.77 4.04
2915 3027 6.147328 GCCATTCCTCTCGGTTATTATGTTAC 59.853 42.308 0.00 0.00 0.00 2.50
3523 3642 6.365970 AAAGAGAAGAGCAAGAATGAGGTA 57.634 37.500 0.00 0.00 0.00 3.08
4157 4303 5.761234 TCCAAGGTTTACATTGTACTGTGTC 59.239 40.000 6.53 0.00 36.04 3.67
4412 4560 7.072263 ACTCCCTCTGATCGAATGAATTAAT 57.928 36.000 0.00 0.00 0.00 1.40
4477 4625 4.530388 CATCAATTCATTCGGATTGGACG 58.470 43.478 0.52 0.00 0.00 4.79
5005 5675 3.515602 AAGAGATGGTTGCTTCAGGTT 57.484 42.857 0.00 0.00 0.00 3.50
5152 5822 5.808366 TTCTCCTGTCTGTAGTGACAATT 57.192 39.130 0.00 0.00 44.98 2.32
5440 6113 4.649267 TGGATGTTTGTATTGGACTCCA 57.351 40.909 0.00 0.00 0.00 3.86
5489 6165 2.260844 TGGCCTTTTCAGAGACACAG 57.739 50.000 3.32 0.00 0.00 3.66
5559 6236 4.944962 TCACTCATTTTGGTAATCTGCG 57.055 40.909 0.00 0.00 0.00 5.18
5560 6237 4.574892 TCACTCATTTTGGTAATCTGCGA 58.425 39.130 0.00 0.00 0.00 5.10
5561 6238 5.000591 TCACTCATTTTGGTAATCTGCGAA 58.999 37.500 0.00 0.00 0.00 4.70
5562 6239 5.122239 TCACTCATTTTGGTAATCTGCGAAG 59.878 40.000 0.00 0.00 0.00 3.79
5563 6240 4.396166 ACTCATTTTGGTAATCTGCGAAGG 59.604 41.667 0.00 0.00 0.00 3.46
5564 6241 3.694072 TCATTTTGGTAATCTGCGAAGGG 59.306 43.478 0.00 0.00 0.00 3.95
5565 6242 2.122783 TTTGGTAATCTGCGAAGGGG 57.877 50.000 0.00 0.00 0.00 4.79
5566 6243 1.281419 TTGGTAATCTGCGAAGGGGA 58.719 50.000 0.00 0.00 0.00 4.81
5567 6244 0.830648 TGGTAATCTGCGAAGGGGAG 59.169 55.000 0.00 0.00 34.99 4.30
5568 6245 0.533085 GGTAATCTGCGAAGGGGAGC 60.533 60.000 0.00 0.00 33.43 4.70
5569 6246 0.533085 GTAATCTGCGAAGGGGAGCC 60.533 60.000 0.00 0.00 33.43 4.70
5570 6247 0.691078 TAATCTGCGAAGGGGAGCCT 60.691 55.000 0.00 0.00 33.43 4.58
5571 6248 1.566298 AATCTGCGAAGGGGAGCCTT 61.566 55.000 0.00 0.00 33.43 4.35
5572 6249 2.262774 ATCTGCGAAGGGGAGCCTTG 62.263 60.000 0.00 0.00 33.43 3.61
5573 6250 3.984193 CTGCGAAGGGGAGCCTTGG 62.984 68.421 0.00 0.00 0.00 3.61
5583 6260 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5584 6261 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5585 6262 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5586 6263 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5587 6264 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5588 6265 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5589 6266 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5594 6271 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5595 6272 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5596 6273 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5597 6274 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5598 6275 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5599 6276 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5600 6277 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5601 6278 1.608590 GTAAAGCTGCTGCCTTGTGAA 59.391 47.619 12.44 0.00 40.80 3.18
5602 6279 0.386838 AAAGCTGCTGCCTTGTGAAC 59.613 50.000 12.44 0.00 40.80 3.18
5603 6280 0.752743 AAGCTGCTGCCTTGTGAACA 60.753 50.000 12.44 0.00 40.80 3.18
5604 6281 0.538977 AGCTGCTGCCTTGTGAACAT 60.539 50.000 12.44 0.00 40.80 2.71
5605 6282 0.388134 GCTGCTGCCTTGTGAACATG 60.388 55.000 3.85 0.00 0.00 3.21
5606 6283 1.241165 CTGCTGCCTTGTGAACATGA 58.759 50.000 0.00 0.00 0.00 3.07
5607 6284 1.199327 CTGCTGCCTTGTGAACATGAG 59.801 52.381 0.00 0.00 0.00 2.90
5608 6285 0.524862 GCTGCCTTGTGAACATGAGG 59.475 55.000 0.00 0.00 0.00 3.86
5609 6286 1.901591 CTGCCTTGTGAACATGAGGT 58.098 50.000 0.00 0.00 0.00 3.85
5610 6287 1.808945 CTGCCTTGTGAACATGAGGTC 59.191 52.381 0.00 0.00 0.00 3.85
5611 6288 1.142667 TGCCTTGTGAACATGAGGTCA 59.857 47.619 0.00 0.00 0.00 4.02
5612 6289 2.224843 TGCCTTGTGAACATGAGGTCAT 60.225 45.455 0.00 0.00 36.96 3.06
5623 6300 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
5624 6301 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
5625 6302 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
5626 6303 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
5627 6304 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
5628 6305 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
5629 6306 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
5630 6307 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
5631 6308 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
5632 6309 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
5643 6320 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
5644 6321 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
5645 6322 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
5646 6323 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
5647 6324 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
5648 6325 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
5649 6326 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
5650 6327 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
5651 6328 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
5652 6329 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
5653 6330 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
5654 6331 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
5655 6332 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
5656 6333 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
5657 6334 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
5658 6335 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
5659 6336 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
5660 6337 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
5661 6338 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
5662 6339 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
5663 6340 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5664 6341 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5665 6342 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5666 6343 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5667 6344 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
5668 6345 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
5669 6346 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
5670 6347 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
5671 6348 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
5672 6349 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
5673 6350 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
5674 6351 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
5675 6352 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
5676 6353 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
5677 6354 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
5678 6355 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
5679 6356 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
5680 6357 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
5681 6358 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
5682 6359 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
5683 6360 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
5688 6365 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5689 6366 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5690 6367 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5691 6368 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5692 6369 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5693 6370 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5694 6371 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5695 6372 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5696 6373 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
5697 6374 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
5698 6375 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
5699 6376 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
5700 6377 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
5701 6378 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
5702 6379 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5703 6380 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5704 6381 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5705 6382 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5706 6383 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5707 6384 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5728 6405 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
5729 6406 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
5730 6407 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
5731 6408 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
5732 6409 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
5733 6410 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
5734 6411 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
5735 6412 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
5736 6413 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
5867 6544 1.713937 TACGATGCCAAATGCCAGCG 61.714 55.000 0.24 0.24 40.16 5.18
5898 6575 8.453320 TGTAGTTTGCTCATTTGATGATGTTAG 58.547 33.333 0.00 0.00 38.85 2.34
6165 6861 5.724370 TCCTGTCTAACCTATCATTTGTCCA 59.276 40.000 0.00 0.00 0.00 4.02
6546 7244 6.381133 TCTCTTGAGACATAATTGGCTACTCA 59.619 38.462 0.00 0.00 43.05 3.41
7011 7713 2.479837 CACTTGTGCCAAGACGTCTTA 58.520 47.619 29.28 12.73 34.28 2.10
7399 8120 1.818674 AGTGGATTGTTTGGATTCGGC 59.181 47.619 0.00 0.00 0.00 5.54
7465 8186 6.852345 GCTTAGCTCAACTACGTAGATAGTTC 59.148 42.308 28.74 12.25 42.30 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.023673 CAAAGCCAAACACCAGACAGA 58.976 47.619 0.00 0.00 0.00 3.41
1 2 1.067516 CCAAAGCCAAACACCAGACAG 59.932 52.381 0.00 0.00 0.00 3.51
5 6 0.030638 CGACCAAAGCCAAACACCAG 59.969 55.000 0.00 0.00 0.00 4.00
31 32 2.421073 CACCTAGTCGACGGTCATGTTA 59.579 50.000 11.69 0.00 0.00 2.41
45 46 2.064581 GGCCGTGGATCCACCTAGT 61.065 63.158 34.05 0.00 43.49 2.57
119 120 1.545841 CCTAGAGGCCAAAACCAACC 58.454 55.000 5.01 0.00 0.00 3.77
168 170 1.967066 GTCCACATCGATCCTGAGGAT 59.033 52.381 15.10 15.10 46.28 3.24
169 171 1.403814 GTCCACATCGATCCTGAGGA 58.596 55.000 2.43 2.43 35.55 3.71
174 176 0.741326 CAGACGTCCACATCGATCCT 59.259 55.000 13.01 0.00 0.00 3.24
177 179 1.816537 CCCAGACGTCCACATCGAT 59.183 57.895 13.01 0.00 0.00 3.59
178 180 3.001902 GCCCAGACGTCCACATCGA 62.002 63.158 13.01 0.00 0.00 3.59
181 183 4.082523 CCGCCCAGACGTCCACAT 62.083 66.667 13.01 0.00 0.00 3.21
210 251 1.949257 CCGAAAGTGTCACCCAAGC 59.051 57.895 0.00 0.00 0.00 4.01
224 265 1.573829 GCACCAAGTGAATCGCCGAA 61.574 55.000 0.00 0.00 35.23 4.30
236 277 4.252073 GCTAGATGAGGATATGCACCAAG 58.748 47.826 0.00 0.00 0.00 3.61
271 312 6.763135 GCTGGATGAAAACTGATACATCTACA 59.237 38.462 0.00 0.00 39.03 2.74
344 409 1.599047 GCAACAGGCAGGAGCTCTA 59.401 57.895 14.64 0.00 43.97 2.43
376 441 6.565999 CGGTGTAAAAGGAGATGAACTGTTTC 60.566 42.308 0.00 0.00 0.00 2.78
399 464 8.365399 ACAGTTCACAACATATACATAATCGG 57.635 34.615 0.00 0.00 0.00 4.18
412 477 7.707893 GGAGTACTAAGTTTACAGTTCACAACA 59.292 37.037 0.00 0.00 0.00 3.33
413 478 7.170489 GGGAGTACTAAGTTTACAGTTCACAAC 59.830 40.741 0.00 0.00 0.00 3.32
435 500 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
436 501 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
437 502 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
438 503 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
439 504 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
440 505 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
441 506 5.637006 TTGGGTCATCTATTTTGAAACGG 57.363 39.130 0.00 0.00 0.00 4.44
442 507 8.434661 CAAAATTGGGTCATCTATTTTGAAACG 58.565 33.333 14.48 0.00 44.64 3.60
443 508 9.271828 ACAAAATTGGGTCATCTATTTTGAAAC 57.728 29.630 21.48 0.00 44.64 2.78
509 574 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
510 575 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
511 576 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
512 577 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
513 578 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
514 579 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
515 580 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
516 581 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
517 582 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
518 583 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
519 584 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
520 585 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
521 586 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
522 587 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
523 588 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
524 589 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
525 590 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
526 591 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
527 592 2.450476 GTACTACTCCCTCCGTTCCAA 58.550 52.381 0.00 0.00 0.00 3.53
528 593 1.679944 CGTACTACTCCCTCCGTTCCA 60.680 57.143 0.00 0.00 0.00 3.53
529 594 1.020437 CGTACTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
530 595 1.743996 ACGTACTACTCCCTCCGTTC 58.256 55.000 0.00 0.00 0.00 3.95
531 596 3.055094 TCTTACGTACTACTCCCTCCGTT 60.055 47.826 0.00 0.00 0.00 4.44
532 597 2.501723 TCTTACGTACTACTCCCTCCGT 59.498 50.000 0.00 0.00 0.00 4.69
533 598 3.185246 TCTTACGTACTACTCCCTCCG 57.815 52.381 0.00 0.00 0.00 4.63
534 599 5.128919 TCAATCTTACGTACTACTCCCTCC 58.871 45.833 0.00 0.00 0.00 4.30
535 600 6.880942 ATCAATCTTACGTACTACTCCCTC 57.119 41.667 0.00 0.00 0.00 4.30
536 601 6.606395 ACAATCAATCTTACGTACTACTCCCT 59.394 38.462 0.00 0.00 0.00 4.20
537 602 6.803642 ACAATCAATCTTACGTACTACTCCC 58.196 40.000 0.00 0.00 0.00 4.30
538 603 9.962783 ATTACAATCAATCTTACGTACTACTCC 57.037 33.333 0.00 0.00 0.00 3.85
607 675 6.377712 AGGAGCGTTTAGATCACTACTTTAGT 59.622 38.462 0.00 0.00 40.28 2.24
608 676 6.797454 AGGAGCGTTTAGATCACTACTTTAG 58.203 40.000 0.00 0.00 36.90 1.85
609 677 6.770746 AGGAGCGTTTAGATCACTACTTTA 57.229 37.500 0.00 0.00 36.90 1.85
610 678 5.662674 AGGAGCGTTTAGATCACTACTTT 57.337 39.130 0.00 0.00 36.90 2.66
611 679 6.963083 ATAGGAGCGTTTAGATCACTACTT 57.037 37.500 0.00 0.00 36.90 2.24
612 680 8.638629 AATATAGGAGCGTTTAGATCACTACT 57.361 34.615 0.00 0.00 36.90 2.57
613 681 9.991388 CTAATATAGGAGCGTTTAGATCACTAC 57.009 37.037 0.00 0.00 36.90 2.73
614 682 9.736414 ACTAATATAGGAGCGTTTAGATCACTA 57.264 33.333 0.00 0.00 36.90 2.74
615 683 8.638629 ACTAATATAGGAGCGTTTAGATCACT 57.361 34.615 0.00 0.00 36.90 3.41
616 684 9.694137 AAACTAATATAGGAGCGTTTAGATCAC 57.306 33.333 0.00 0.00 36.90 3.06
619 687 9.837525 CGTAAACTAATATAGGAGCGTTTAGAT 57.162 33.333 0.00 0.00 30.36 1.98
620 688 8.292448 CCGTAAACTAATATAGGAGCGTTTAGA 58.708 37.037 0.00 0.00 30.36 2.10
621 689 8.292448 TCCGTAAACTAATATAGGAGCGTTTAG 58.708 37.037 0.00 0.00 30.36 1.85
622 690 8.165239 TCCGTAAACTAATATAGGAGCGTTTA 57.835 34.615 0.00 0.00 0.00 2.01
623 691 7.042797 TCCGTAAACTAATATAGGAGCGTTT 57.957 36.000 0.00 0.00 0.00 3.60
624 692 6.294397 CCTCCGTAAACTAATATAGGAGCGTT 60.294 42.308 3.27 0.00 41.62 4.84
625 693 5.182760 CCTCCGTAAACTAATATAGGAGCGT 59.817 44.000 3.27 0.00 41.62 5.07
626 694 5.392811 CCCTCCGTAAACTAATATAGGAGCG 60.393 48.000 3.27 0.00 41.62 5.03
627 695 5.713861 TCCCTCCGTAAACTAATATAGGAGC 59.286 44.000 3.27 0.00 41.62 4.70
628 696 6.947158 ACTCCCTCCGTAAACTAATATAGGAG 59.053 42.308 0.00 0.00 42.36 3.69
629 697 6.856757 ACTCCCTCCGTAAACTAATATAGGA 58.143 40.000 0.00 0.00 0.00 2.94
630 698 8.820153 ATACTCCCTCCGTAAACTAATATAGG 57.180 38.462 0.00 0.00 0.00 2.57
644 712 9.819267 GGAATCTAATAAATAATACTCCCTCCG 57.181 37.037 0.00 0.00 0.00 4.63
788 859 2.306219 GGCCCCTCTATTTGACTATCCC 59.694 54.545 0.00 0.00 0.00 3.85
1023 1096 3.506059 CTGCCGCTTCGATCCCGAT 62.506 63.158 0.00 0.00 45.10 4.18
1193 1266 1.565759 AGCAAATGGAGCATAGGGACA 59.434 47.619 0.00 0.00 0.00 4.02
1635 1718 5.541868 ACATTCTCTGTTCTCTCTTCTCCAA 59.458 40.000 0.00 0.00 32.90 3.53
1636 1719 5.047448 CACATTCTCTGTTCTCTCTTCTCCA 60.047 44.000 0.00 0.00 35.29 3.86
1763 1848 4.334759 CCATCTTTCTTGTGACCATAGCAG 59.665 45.833 0.00 0.00 0.00 4.24
1966 2051 9.690913 ATAATGGACATGGTCATATAATTCCAG 57.309 33.333 0.00 0.00 35.41 3.86
2127 2212 5.070981 TCCATTTGTGCAATAGGTTTCCAAA 59.929 36.000 0.00 0.00 0.00 3.28
2289 2375 1.472480 GACAAGGCGTACGTAACCCTA 59.528 52.381 17.90 0.00 30.95 3.53
2499 2611 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2500 2612 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2501 2613 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2502 2614 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2503 2615 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2504 2616 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2505 2617 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2506 2618 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2507 2619 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2508 2620 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2509 2621 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2510 2622 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2522 2634 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2525 2637 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2526 2638 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2527 2639 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2528 2640 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2534 2646 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2535 2647 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2536 2648 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2537 2649 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2538 2650 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2550 2662 2.153039 GCGCATCAAAAAGGGCAAC 58.847 52.632 0.30 0.00 42.51 4.17
2551 2663 4.671406 GCGCATCAAAAAGGGCAA 57.329 50.000 0.30 0.00 42.51 4.52
2553 2665 1.926510 GTATTGCGCATCAAAAAGGGC 59.073 47.619 12.75 0.00 43.17 5.19
2554 2666 2.923020 GTGTATTGCGCATCAAAAAGGG 59.077 45.455 12.75 0.00 38.34 3.95
2555 2667 2.923020 GGTGTATTGCGCATCAAAAAGG 59.077 45.455 12.75 0.00 38.34 3.11
2556 2668 3.573598 TGGTGTATTGCGCATCAAAAAG 58.426 40.909 12.75 0.00 38.34 2.27
2557 2669 3.650070 TGGTGTATTGCGCATCAAAAA 57.350 38.095 12.75 0.00 38.34 1.94
2558 2670 3.650070 TTGGTGTATTGCGCATCAAAA 57.350 38.095 12.75 6.93 38.34 2.44
2559 2671 3.650070 TTTGGTGTATTGCGCATCAAA 57.350 38.095 12.75 12.33 42.49 2.69
2560 2672 3.865011 ATTTGGTGTATTGCGCATCAA 57.135 38.095 12.75 6.81 35.43 2.57
2561 2673 3.691609 TGTATTTGGTGTATTGCGCATCA 59.308 39.130 12.75 8.74 0.00 3.07
2562 2674 4.285807 TGTATTTGGTGTATTGCGCATC 57.714 40.909 12.75 5.82 0.00 3.91
2563 2675 4.710423 TTGTATTTGGTGTATTGCGCAT 57.290 36.364 12.75 3.99 0.00 4.73
2564 2676 4.505313 TTTGTATTTGGTGTATTGCGCA 57.495 36.364 5.66 5.66 0.00 6.09
2565 2677 5.060446 GTCTTTTGTATTTGGTGTATTGCGC 59.940 40.000 0.00 0.00 0.00 6.09
2566 2678 6.146216 TGTCTTTTGTATTTGGTGTATTGCG 58.854 36.000 0.00 0.00 0.00 4.85
2567 2679 8.434661 CAATGTCTTTTGTATTTGGTGTATTGC 58.565 33.333 0.00 0.00 0.00 3.56
2568 2680 9.689976 TCAATGTCTTTTGTATTTGGTGTATTG 57.310 29.630 0.00 0.00 0.00 1.90
2570 2682 9.859427 CATCAATGTCTTTTGTATTTGGTGTAT 57.141 29.630 0.00 0.00 0.00 2.29
2571 2683 7.812191 GCATCAATGTCTTTTGTATTTGGTGTA 59.188 33.333 0.00 0.00 0.00 2.90
2572 2684 6.646240 GCATCAATGTCTTTTGTATTTGGTGT 59.354 34.615 0.00 0.00 0.00 4.16
2573 2685 6.091169 GGCATCAATGTCTTTTGTATTTGGTG 59.909 38.462 0.00 0.00 0.00 4.17
2574 2686 6.014327 AGGCATCAATGTCTTTTGTATTTGGT 60.014 34.615 0.00 0.00 40.39 3.67
2575 2687 6.400568 AGGCATCAATGTCTTTTGTATTTGG 58.599 36.000 0.00 0.00 40.39 3.28
2576 2688 9.590451 AATAGGCATCAATGTCTTTTGTATTTG 57.410 29.630 1.92 0.00 40.39 2.32
2578 2690 9.590451 CAAATAGGCATCAATGTCTTTTGTATT 57.410 29.630 1.92 0.00 40.39 1.89
2579 2691 8.199449 CCAAATAGGCATCAATGTCTTTTGTAT 58.801 33.333 19.20 2.97 40.39 2.29
2640 2752 4.184629 CAACTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2641 2753 3.581332 ACAACTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2642 2754 3.933332 GACAACTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2643 2755 4.822026 AGACAACTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
2644 2756 5.120830 CCAAGACAACTAATTCAGAACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
2645 2757 4.994852 CCAAGACAACTAATTCAGAACGGA 59.005 41.667 0.00 0.00 0.00 4.69
2646 2758 4.994852 TCCAAGACAACTAATTCAGAACGG 59.005 41.667 0.00 0.00 0.00 4.44
2648 2760 8.352942 ACAAATCCAAGACAACTAATTCAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
2649 2761 8.463930 ACAAATCCAAGACAACTAATTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
2650 2762 7.939039 AGACAAATCCAAGACAACTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
2651 2763 8.103948 AGACAAATCCAAGACAACTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
2652 2764 9.219603 CTAGACAAATCCAAGACAACTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
2653 2765 9.436957 TCTAGACAAATCCAAGACAACTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
2654 2766 9.965902 ATCTAGACAAATCCAAGACAACTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2656 2768 9.871238 GTATCTAGACAAATCCAAGACAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
2657 2769 8.188799 CGTATCTAGACAAATCCAAGACAACTA 58.811 37.037 0.00 0.00 0.00 2.24
2658 2770 7.036220 CGTATCTAGACAAATCCAAGACAACT 58.964 38.462 0.00 0.00 0.00 3.16
2659 2771 7.033791 TCGTATCTAGACAAATCCAAGACAAC 58.966 38.462 0.00 0.00 0.00 3.32
2660 2772 7.165460 TCGTATCTAGACAAATCCAAGACAA 57.835 36.000 0.00 0.00 0.00 3.18
2661 2773 6.769134 TCGTATCTAGACAAATCCAAGACA 57.231 37.500 0.00 0.00 0.00 3.41
2662 2774 7.707035 ACATTCGTATCTAGACAAATCCAAGAC 59.293 37.037 0.00 0.00 0.00 3.01
2663 2775 7.782049 ACATTCGTATCTAGACAAATCCAAGA 58.218 34.615 0.00 0.00 0.00 3.02
2664 2776 9.698309 ATACATTCGTATCTAGACAAATCCAAG 57.302 33.333 0.00 0.00 32.66 3.61
2681 2793 9.737427 CACTAAAATGAGTCTAGATACATTCGT 57.263 33.333 19.92 15.85 32.84 3.85
2682 2794 8.695284 GCACTAAAATGAGTCTAGATACATTCG 58.305 37.037 19.92 15.45 32.84 3.34
2683 2795 9.757227 AGCACTAAAATGAGTCTAGATACATTC 57.243 33.333 19.92 11.28 32.84 2.67
2686 2798 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
2690 2802 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
2691 2803 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
2692 2804 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
2693 2805 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
2694 2806 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
2695 2807 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
2696 2808 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
2697 2809 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
2698 2810 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
2699 2811 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
2712 2824 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
2713 2825 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
2714 2826 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
2715 2827 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
2716 2828 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
2717 2829 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2718 2830 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
2729 2841 9.746711 CGTTCTGAATTACTTGTCTTAGATTTG 57.253 33.333 0.00 0.00 0.00 2.32
2730 2842 8.936864 CCGTTCTGAATTACTTGTCTTAGATTT 58.063 33.333 0.00 0.00 0.00 2.17
2731 2843 8.311836 TCCGTTCTGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
2732 2844 7.837863 TCCGTTCTGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
2733 2845 7.223260 TCCGTTCTGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
2734 2846 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
2735 2847 6.395629 CCTCCGTTCTGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
2736 2848 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
2737 2849 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2738 2850 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2739 2851 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2740 2852 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2741 2853 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2742 2854 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2743 2855 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2744 2856 6.267014 CCTATTACTCCCTCCGTTCTGAATTA 59.733 42.308 0.00 0.00 0.00 1.40
2745 2857 5.070580 CCTATTACTCCCTCCGTTCTGAATT 59.929 44.000 0.00 0.00 0.00 2.17
2746 2858 4.589374 CCTATTACTCCCTCCGTTCTGAAT 59.411 45.833 0.00 0.00 0.00 2.57
2747 2859 3.958798 CCTATTACTCCCTCCGTTCTGAA 59.041 47.826 0.00 0.00 0.00 3.02
2748 2860 3.563223 CCTATTACTCCCTCCGTTCTGA 58.437 50.000 0.00 0.00 0.00 3.27
2749 2861 2.036089 GCCTATTACTCCCTCCGTTCTG 59.964 54.545 0.00 0.00 0.00 3.02
2750 2862 2.317973 GCCTATTACTCCCTCCGTTCT 58.682 52.381 0.00 0.00 0.00 3.01
2751 2863 2.036089 CTGCCTATTACTCCCTCCGTTC 59.964 54.545 0.00 0.00 0.00 3.95
2752 2864 2.040178 CTGCCTATTACTCCCTCCGTT 58.960 52.381 0.00 0.00 0.00 4.44
2753 2865 1.705873 CTGCCTATTACTCCCTCCGT 58.294 55.000 0.00 0.00 0.00 4.69
2754 2866 0.969894 CCTGCCTATTACTCCCTCCG 59.030 60.000 0.00 0.00 0.00 4.63
2755 2867 1.972075 GACCTGCCTATTACTCCCTCC 59.028 57.143 0.00 0.00 0.00 4.30
2756 2868 1.972075 GGACCTGCCTATTACTCCCTC 59.028 57.143 0.00 0.00 0.00 4.30
2757 2869 1.758123 CGGACCTGCCTATTACTCCCT 60.758 57.143 0.00 0.00 0.00 4.20
2758 2870 0.680061 CGGACCTGCCTATTACTCCC 59.320 60.000 0.00 0.00 0.00 4.30
2759 2871 0.680061 CCGGACCTGCCTATTACTCC 59.320 60.000 0.00 0.00 0.00 3.85
2760 2872 1.411041 ACCGGACCTGCCTATTACTC 58.589 55.000 9.46 0.00 0.00 2.59
2761 2873 1.875488 AACCGGACCTGCCTATTACT 58.125 50.000 9.46 0.00 0.00 2.24
2762 2874 2.285977 CAAACCGGACCTGCCTATTAC 58.714 52.381 9.46 0.00 0.00 1.89
2763 2875 1.210967 CCAAACCGGACCTGCCTATTA 59.789 52.381 9.46 0.00 36.56 0.98
2764 2876 0.034477 CCAAACCGGACCTGCCTATT 60.034 55.000 9.46 0.00 36.56 1.73
3523 3642 5.699097 TTTGCTCGTACAAAATAAAGGCT 57.301 34.783 3.65 0.00 36.62 4.58
3817 3946 2.945080 GTAACCTATTACCAGGCCCC 57.055 55.000 0.00 0.00 39.53 5.80
3922 4057 6.905076 CACCAAGTCGACGGAATAAATATTTG 59.095 38.462 15.42 7.48 0.00 2.32
4157 4303 3.127548 ACTCACTGCCAAATTCAATAGCG 59.872 43.478 0.00 0.00 0.00 4.26
4339 4487 7.228706 CCTGAAAAACAGTAAAGTGGACTACAT 59.771 37.037 0.00 0.00 44.40 2.29
4344 4492 4.885325 TCCCTGAAAAACAGTAAAGTGGAC 59.115 41.667 0.00 0.00 44.40 4.02
4412 4560 4.895889 AGAGTACATTGTATAGAGGCTGCA 59.104 41.667 0.50 0.00 0.00 4.41
4477 4625 4.473199 GTCAAAACGGAAAATGCTACTCC 58.527 43.478 0.00 0.00 0.00 3.85
5005 5675 4.038522 TCAAGCCGATTTCAAAATGTCCAA 59.961 37.500 0.00 0.00 0.00 3.53
5489 6165 3.825328 AGGATGTGCTCCCAATCAATAC 58.175 45.455 0.00 0.00 46.27 1.89
5565 6242 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5566 6243 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5567 6244 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5568 6245 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5569 6246 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5570 6247 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5571 6248 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5572 6249 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5576 6253 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
5577 6254 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
5578 6255 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
5579 6256 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
5580 6257 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
5581 6258 1.238439 TCACAAGGCAGCAGCTTTAC 58.762 50.000 0.00 0.00 38.07 2.01
5582 6259 1.608590 GTTCACAAGGCAGCAGCTTTA 59.391 47.619 0.00 0.00 38.07 1.85
5583 6260 0.386838 GTTCACAAGGCAGCAGCTTT 59.613 50.000 0.00 0.00 41.17 3.51
5584 6261 0.752743 TGTTCACAAGGCAGCAGCTT 60.753 50.000 0.00 0.00 41.70 3.74
5585 6262 0.538977 ATGTTCACAAGGCAGCAGCT 60.539 50.000 0.00 0.00 41.70 4.24
5586 6263 0.388134 CATGTTCACAAGGCAGCAGC 60.388 55.000 0.00 0.00 41.10 5.25
5587 6264 1.199327 CTCATGTTCACAAGGCAGCAG 59.801 52.381 0.00 0.00 0.00 4.24
5588 6265 1.241165 CTCATGTTCACAAGGCAGCA 58.759 50.000 0.00 0.00 0.00 4.41
5589 6266 0.524862 CCTCATGTTCACAAGGCAGC 59.475 55.000 0.00 0.00 0.00 5.25
5590 6267 1.808945 GACCTCATGTTCACAAGGCAG 59.191 52.381 0.00 0.00 29.05 4.85
5591 6268 1.142667 TGACCTCATGTTCACAAGGCA 59.857 47.619 0.00 0.00 29.05 4.75
5592 6269 1.896220 TGACCTCATGTTCACAAGGC 58.104 50.000 0.00 0.00 29.05 4.35
5603 6280 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
5604 6281 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
5605 6282 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
5606 6283 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
5607 6284 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
5608 6285 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
5609 6286 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
5610 6287 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
5611 6288 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
5612 6289 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
5613 6290 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5614 6291 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5615 6292 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5616 6293 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5617 6294 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5618 6295 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5619 6296 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5620 6297 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
5621 6298 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
5622 6299 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
5623 6300 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
5624 6301 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
5625 6302 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
5626 6303 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
5636 6313 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
5637 6314 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
5638 6315 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
5639 6316 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
5640 6317 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
5641 6318 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
5642 6319 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5643 6320 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5644 6321 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5645 6322 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5646 6323 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5647 6324 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5648 6325 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
5649 6326 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
5650 6327 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
5651 6328 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
5652 6329 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
5653 6330 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
5654 6331 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
5655 6332 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
5656 6333 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
5657 6334 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
5658 6335 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
5659 6336 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
5660 6337 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
5661 6338 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
5662 6339 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
5672 6349 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5673 6350 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5674 6351 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5675 6352 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5676 6353 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5677 6354 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5678 6355 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5679 6356 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
5680 6357 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
5681 6358 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5682 6359 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5683 6360 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5684 6361 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5685 6362 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5686 6363 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5687 6364 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5688 6365 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
5689 6366 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
5690 6367 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
5702 6379 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5705 6382 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5706 6383 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5707 6384 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5708 6385 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5710 6387 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
5711 6388 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
5712 6389 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
5713 6390 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
5714 6391 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
5715 6392 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
5716 6393 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
5717 6394 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
5718 6395 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
5737 6414 8.572855 TGCAAATTATCAAAATAAAAAGGGGG 57.427 30.769 0.00 0.00 31.28 5.40
5753 6430 9.467258 CGGATTAAGATCACATTTGCAAATTAT 57.533 29.630 21.95 15.00 33.77 1.28
5754 6431 8.681806 TCGGATTAAGATCACATTTGCAAATTA 58.318 29.630 21.95 10.99 33.77 1.40
5755 6432 7.546358 TCGGATTAAGATCACATTTGCAAATT 58.454 30.769 21.95 7.88 33.77 1.82
5756 6433 7.099266 TCGGATTAAGATCACATTTGCAAAT 57.901 32.000 18.99 18.99 33.77 2.32
5757 6434 6.150976 ACTCGGATTAAGATCACATTTGCAAA 59.849 34.615 15.44 15.44 33.77 3.68
5758 6435 5.647658 ACTCGGATTAAGATCACATTTGCAA 59.352 36.000 0.00 0.00 33.77 4.08
5759 6436 5.185454 ACTCGGATTAAGATCACATTTGCA 58.815 37.500 0.00 0.00 33.77 4.08
5760 6437 5.741388 ACTCGGATTAAGATCACATTTGC 57.259 39.130 0.00 0.00 33.77 3.68
5867 6544 5.530519 TCAAATGAGCAAACTACATCGAC 57.469 39.130 0.00 0.00 0.00 4.20
6546 7244 4.277174 TCATGAGTTTGGTACGCAAAACAT 59.723 37.500 15.54 15.72 40.20 2.71
6977 7679 1.059913 CAAGTGGGGAGGACTTCACT 58.940 55.000 0.00 0.00 41.59 3.41
7011 7713 1.895798 TGCAGAGAGACTGGTTCGAAT 59.104 47.619 0.00 0.00 45.82 3.34
7399 8120 5.757886 TGTTCGACATTCCTAAAGCAAAAG 58.242 37.500 0.00 0.00 0.00 2.27
7465 8186 6.414732 TCCTACCATGGTTATTTCTGAACTG 58.585 40.000 25.38 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.