AutoCloner

Multiple sequence alignment - TraesCS7B01G218700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G218700	chr7B	100.000	2240	0	0	1	2240	407494768	407492529	0.000000e+00	4137
1	TraesCS7B01G218700	chr7B	92.035	113	8	1	574	686	407494118	407494007	8.280000e-35	158
2	TraesCS7B01G218700	chr7B	92.035	113	8	1	651	762	407494195	407494083	8.280000e-35	158
3	TraesCS7B01G218700	chr6D	93.587	842	50	2	1399	2240	433588517	433589354	0.000000e+00	1253
4	TraesCS7B01G218700	chr6D	94.763	611	31	1	788	1397	433587727	433588337	0.000000e+00	950
5	TraesCS7B01G218700	chr6D	94.710	586	31	0	1	586	433587146	433587731	0.000000e+00	911
6	TraesCS7B01G218700	chr7D	91.339	866	47	14	1399	2240	370969840	370968979	0.000000e+00	1158
7	TraesCS7B01G218700	chr7D	90.647	866	52	15	1399	2240	209082825	209081965	0.000000e+00	1123
8	TraesCS7B01G218700	chr7D	96.072	611	23	1	788	1397	370970630	370970020	0.000000e+00	994
9	TraesCS7B01G218700	chr7D	95.581	611	26	1	788	1397	209083615	209083005	0.000000e+00	977
10	TraesCS7B01G218700	chr7D	95.060	587	28	1	1	586	209084197	209083611	0.000000e+00	922
11	TraesCS7B01G218700	chr7D	95.051	586	29	0	1	586	370971211	370970626	0.000000e+00	922
12	TraesCS7B01G218700	chr7D	89.984	629	61	2	768	1395	135505815	135505188	0.000000e+00	811
13	TraesCS7B01G218700	chr7D	89.825	629	62	2	768	1395	71589968	71589341	0.000000e+00	806
14	TraesCS7B01G218700	chr7D	82.979	470	55	9	1399	1868	71589159	71588715	3.470000e-108	401
15	TraesCS7B01G218700	chr1D	90.141	639	59	4	761	1397	267991975	267992611	0.000000e+00	828
16	TraesCS7B01G218700	chr1D	90.126	476	45	2	1	475	18168553	18169027	3.160000e-173	617
17	TraesCS7B01G218700	chr1D	78.225	845	106	37	1399	2210	267992792	267993591	9.370000e-129	470
18	TraesCS7B01G218700	chr3A	90.174	631	61	1	768	1397	716985053	716985683	0.000000e+00	821
19	TraesCS7B01G218700	chr3A	89.496	476	47	3	1	474	716984423	716984897	1.140000e-167	599
20	TraesCS7B01G218700	chr3A	85.542	332	36	6	1399	1730	716985863	716986182	9.910000e-89	337
21	TraesCS7B01G218700	chr5D	90.143	629	60	2	768	1395	306246862	306246235	0.000000e+00	817
22	TraesCS7B01G218700	chr5D	90.126	476	46	1	1	475	306247535	306247060	3.160000e-173	617
23	TraesCS7B01G218700	chr3B	90.260	616	57	3	782	1395	672262598	672263212	0.000000e+00	802
24	TraesCS7B01G218700	chr3B	78.947	380	54	12	1474	1853	672271862	672272215	3.720000e-58	235
25	TraesCS7B01G218700	chr6A	90.126	476	46	1	1	475	535296192	535295717	3.160000e-173	617
26	TraesCS7B01G218700	chr6A	82.766	470	53	15	1399	1868	535281304	535280863	5.800000e-106	394
27	TraesCS7B01G218700	chr7A	89.286	476	50	1	1	475	80559149	80559624	1.480000e-166	595
28	TraesCS7B01G218700	chr7A	83.117	462	53	9	1399	1860	80560604	80561040	4.480000e-107	398
29	TraesCS7B01G218700	chr5A	88.866	476	50	3	1	474	638079694	638080168	1.150000e-162	582
30	TraesCS7B01G218700	chr5A	85.843	332	35	6	1399	1730	638081105	638081424	2.130000e-90	342
31	TraesCS7B01G218700	chrUn	93.238	281	19	0	1399	1679	476084525	476084805	4.450000e-112	414

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G218700	chr7B	407492529	407494768	2239	True	1484.333333	4137	94.690000	1	2240	3	chr7B.!!$R1	2239
1	TraesCS7B01G218700	chr6D	433587146	433589354	2208	False	1038.000000	1253	94.353333	1	2240	3	chr6D.!!$F1	2239
2	TraesCS7B01G218700	chr7D	370968979	370971211	2232	True	1024.666667	1158	94.154000	1	2240	3	chr7D.!!$R4	2239
3	TraesCS7B01G218700	chr7D	209081965	209084197	2232	True	1007.333333	1123	93.762667	1	2240	3	chr7D.!!$R3	2239
4	TraesCS7B01G218700	chr7D	135505188	135505815	627	True	811.000000	811	89.984000	768	1395	1	chr7D.!!$R1	627
5	TraesCS7B01G218700	chr7D	71588715	71589968	1253	True	603.500000	806	86.402000	768	1868	2	chr7D.!!$R2	1100
6	TraesCS7B01G218700	chr1D	267991975	267993591	1616	False	649.000000	828	84.183000	761	2210	2	chr1D.!!$F2	1449
7	TraesCS7B01G218700	chr3A	716984423	716986182	1759	False	585.666667	821	88.404000	1	1730	3	chr3A.!!$F1	1729
8	TraesCS7B01G218700	chr5D	306246235	306247535	1300	True	717.000000	817	90.134500	1	1395	2	chr5D.!!$R1	1394
9	TraesCS7B01G218700	chr3B	672262598	672263212	614	False	802.000000	802	90.260000	782	1395	1	chr3B.!!$F1	613
10	TraesCS7B01G218700	chr7A	80559149	80561040	1891	False	496.500000	595	86.201500	1	1860	2	chr7A.!!$F1	1859
11	TraesCS7B01G218700	chr5A	638079694	638081424	1730	False	462.000000	582	87.354500	1	1730	2	chr5A.!!$F1	1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
261	263	2.356535	GGGTGCAGAGAAGTCATTGGAT	60.357	50.0	0.0	0.0	0.0	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1930	2205	0.247736	CCTGACCCTCTCCTTGTTCG	59.752	60.0	0.0	0.0	0.0	3.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	3.132646	TGTCAGTTTCAAAATGCAAGGCT	59.867	39.130	0.00	0.00	0.00	4.58
172	174	4.130118	GCCAATACACTAGATCCAACTGG	58.870	47.826	0.00	0.00	0.00	4.00
261	263	2.356535	GGGTGCAGAGAAGTCATTGGAT	60.357	50.000	0.00	0.00	0.00	3.41
397	399	6.151144	ACAAATGATAGCTGGAAGTGGTTTAC	59.849	38.462	0.00	0.00	35.30	2.01
409	411	5.049612	GGAAGTGGTTTACTGCTCTGTTAAC	60.050	44.000	0.00	0.00	40.26	2.01
419	421	4.816925	ACTGCTCTGTTAACCAAAGACTTC	59.183	41.667	2.48	0.00	0.00	3.01
587	617	8.302965	AAATGCAAATCTTACTTGCTTTTCTC	57.697	30.769	12.79	0.00	46.06	2.87
588	618	7.927629	AAATGCAAATCTTACTTGCTTTTCTCA	59.072	29.630	12.79	0.00	46.06	3.27
665	695	9.868277	TGAAGAAATTTTTACTTGCTTTTCTCA	57.132	25.926	0.00	0.00	33.56	3.27
670	700	7.880059	ATTTTTACTTGCTTTTCTCAGATGC	57.120	32.000	0.00	0.00	0.00	3.91
671	701	6.389830	TTTTACTTGCTTTTCTCAGATGCA	57.610	33.333	0.00	0.00	0.00	3.96
672	702	6.389830	TTTACTTGCTTTTCTCAGATGCAA	57.610	33.333	9.10	9.10	40.65	4.08
673	703	4.924305	ACTTGCTTTTCTCAGATGCAAA	57.076	36.364	10.25	0.00	42.00	3.68
674	704	5.266733	ACTTGCTTTTCTCAGATGCAAAA	57.733	34.783	10.25	0.00	42.00	2.44
675	705	5.045872	ACTTGCTTTTCTCAGATGCAAAAC	58.954	37.500	10.25	0.00	42.00	2.43
676	706	4.652421	TGCTTTTCTCAGATGCAAAACA	57.348	36.364	0.00	0.00	0.00	2.83
677	707	5.204409	TGCTTTTCTCAGATGCAAAACAT	57.796	34.783	0.00	0.00	43.54	2.71
780	858	8.470002	ACTTCCTTTTCTAAAATATGGCATGTC	58.530	33.333	10.98	0.00	0.00	3.06
816	894	2.360165	GCTTGATTAACAGCATGAGGGG	59.640	50.000	0.00	0.00	39.69	4.79
887	965	5.185828	GCCAATTGGAGGAAGAAATACAAGT	59.814	40.000	29.02	0.00	37.39	3.16
967	1046	3.502123	ACTACAACAAGGCAAGGCTTA	57.498	42.857	8.64	0.00	0.00	3.09
983	1062	3.878160	GCTTACTCAGCTAACTCCTGT	57.122	47.619	0.00	0.00	46.27	4.00
1006	1085	3.152341	GGTGCAAAGGATATCATGAGGG	58.848	50.000	4.83	0.00	0.00	4.30
1007	1086	3.181440	GGTGCAAAGGATATCATGAGGGA	60.181	47.826	4.83	0.00	0.00	4.20
1134	1216	9.527157	TCAAGGTTCTATCCAATAATTTCACAA	57.473	29.630	0.00	0.00	0.00	3.33
1161	1243	9.719279	CAAGAGATGATAAGAAAGAAAATGCTC	57.281	33.333	0.00	0.00	0.00	4.26
1162	1244	9.458727	AAGAGATGATAAGAAAGAAAATGCTCA	57.541	29.630	0.00	0.00	0.00	4.26
1237	1319	7.301868	TGCCCAAATATTTTCAAGAAACTCT	57.698	32.000	0.00	0.00	0.00	3.24
1275	1357	4.397420	TGACACAATACATTGAGGTGCTT	58.603	39.130	8.89	0.00	40.14	3.91
1385	1468	2.949644	GTGGTTACTTTCAACTGGCAGT	59.050	45.455	15.88	15.88	0.00	4.40
1397	1480	0.111253	CTGGCAGTCCTCCCTTGTTT	59.889	55.000	6.28	0.00	0.00	2.83
1484	1746	2.061509	TGAGCAAGCATGGCATACAT	57.938	45.000	0.00	0.00	37.68	2.29
1529	1791	2.818751	AGGGACACAACAAAAGTGGA	57.181	45.000	0.00	0.00	41.21	4.02
1535	1797	5.278604	GGACACAACAAAAGTGGATGTAAC	58.721	41.667	0.00	0.00	41.21	2.50
1572	1835	7.396540	AGAACCCAGAAAACTAAAGCATATG	57.603	36.000	0.00	0.00	0.00	1.78
1579	1842	8.253113	CCAGAAAACTAAAGCATATGTTGGAAT	58.747	33.333	4.29	0.00	0.00	3.01
1600	1863	0.701147	AGAGGGAGAAAGCAAAGGGG	59.299	55.000	0.00	0.00	0.00	4.79
1608	1871	4.145052	GAGAAAGCAAAGGGGAAAAGAGA	58.855	43.478	0.00	0.00	0.00	3.10
1620	1883	6.538263	AGGGGAAAAGAGATGCTAATATGAC	58.462	40.000	0.00	0.00	0.00	3.06
1623	1886	6.205658	GGGAAAAGAGATGCTAATATGACCAC	59.794	42.308	0.00	0.00	0.00	4.16
1631	1894	3.181462	TGCTAATATGACCACTGCTCTGG	60.181	47.826	0.00	0.00	37.33	3.86
1741	2004	3.512724	CAGACTGATGGGCCAAAATCTTT	59.487	43.478	11.89	0.00	0.00	2.52
1753	2016	5.279456	GGCCAAAATCTTTAGCTCCAAGAAA	60.279	40.000	11.33	0.00	33.94	2.52
1793	2056	4.644685	ACTAATGCTCCAACAACAACAACT	59.355	37.500	0.00	0.00	0.00	3.16
1795	2058	4.836125	ATGCTCCAACAACAACAACTAG	57.164	40.909	0.00	0.00	0.00	2.57
1801	2064	4.396790	TCCAACAACAACAACTAGGTCAAC	59.603	41.667	0.00	0.00	0.00	3.18
1829	2092	4.789802	GCCTTCAAGAACTACAGCAACAAC	60.790	45.833	0.00	0.00	0.00	3.32
1830	2093	4.335315	CCTTCAAGAACTACAGCAACAACA	59.665	41.667	0.00	0.00	0.00	3.33
1831	2094	5.163663	CCTTCAAGAACTACAGCAACAACAA	60.164	40.000	0.00	0.00	0.00	2.83
1860	2123	1.681166	GCTGGCACATCAGGTTCTCAT	60.681	52.381	0.00	0.00	38.20	2.90
1864	2127	2.420547	GGCACATCAGGTTCTCATGCTA	60.421	50.000	0.00	0.00	0.00	3.49
1888	2151	3.672808	ACATCAAGTTTCAGAGCTCCTG	58.327	45.455	10.93	8.42	44.27	3.86
1898	2161	1.078567	GAGCTCCTGGAGTGGCAAG	60.079	63.158	23.92	0.00	31.39	4.01
1912	2175	4.547671	AGTGGCAAGTAGCTCTAATCCTA	58.452	43.478	0.00	0.00	44.79	2.94
1922	2197	3.089284	GCTCTAATCCTAGGAGAGGCTC	58.911	54.545	21.87	6.34	46.25	4.70
1930	2205	0.553819	TAGGAGAGGCTCAGGGAGAC	59.446	60.000	18.26	0.00	38.12	3.36
1936	2211	0.832135	AGGCTCAGGGAGACGAACAA	60.832	55.000	0.00	0.00	43.57	2.83
1944	2219	0.533032	GGAGACGAACAAGGAGAGGG	59.467	60.000	0.00	0.00	0.00	4.30
1988	2278	5.501156	AGGGTTCTCAAGCTACTTTAATGG	58.499	41.667	0.00	0.00	0.00	3.16
2010	2300	6.480763	TGGTAGTGGCAATTTCTAAAGATGA	58.519	36.000	0.00	0.00	0.00	2.92
2082	2378	5.846714	AGCTATTATGAACCTATGGTCTGGT	59.153	40.000	0.00	0.00	33.12	4.00
2138	2434	5.046663	TCTGTACTCATGTTCATGCTTACCA	60.047	40.000	7.80	1.54	0.00	3.25
2217	2516	8.461222	GCTATATATGTGCTGCCAATTTCATAA	58.539	33.333	0.00	0.00	0.00	1.90
2227	2526	5.991861	TGCCAATTTCATAAGATGCCAAAT	58.008	33.333	0.00	0.00	0.00	2.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	5.067544	TGCATTTTGAAACTGACACATCTGA	59.932	36.000	0.00	0.00	0.00	3.27
49	51	8.387354	CACGCATGAGTTTATCAAGTACAATTA	58.613	33.333	0.00	0.00	42.53	1.40
72	74	2.805671	TGTACTCACTTTTCATGCCACG	59.194	45.455	0.00	0.00	0.00	4.94
98	100	6.046593	CAGTTCTAGTTGGTAGTCAAACACA	58.953	40.000	0.00	0.00	37.08	3.72
154	156	3.389329	CAGGCCAGTTGGATCTAGTGTAT	59.611	47.826	5.01	0.00	37.39	2.29
172	174	3.981211	TGAAAAATGTTCTTCTGCAGGC	58.019	40.909	15.13	0.24	0.00	4.85
249	251	4.023365	GCAGCCATCTAATCCAATGACTTC	60.023	45.833	0.00	0.00	0.00	3.01
261	263	3.511146	CCCTTGAAAAAGCAGCCATCTAA	59.489	43.478	0.00	0.00	0.00	2.10
357	359	5.246981	TCATTTGTCTCTTTCTCCACCAT	57.753	39.130	0.00	0.00	0.00	3.55
397	399	4.084328	CGAAGTCTTTGGTTAACAGAGCAG	60.084	45.833	8.10	0.00	31.62	4.24
409	411	7.786178	TGGTCATTAATATCGAAGTCTTTGG	57.214	36.000	0.00	0.00	0.00	3.28
419	421	4.692625	CCTGCTCCTTGGTCATTAATATCG	59.307	45.833	0.00	0.00	0.00	2.92
513	515	9.030301	GCGTTGCATTGTCCTAATTAATTAATT	57.970	29.630	23.28	23.28	39.14	1.40
520	549	5.878116	AGTAAGCGTTGCATTGTCCTAATTA	59.122	36.000	0.00	0.00	0.00	1.40
639	669	9.868277	TGAGAAAAGCAAGTAAAAATTTCTTCA	57.132	25.926	0.00	0.00	37.28	3.02
644	674	8.768019	GCATCTGAGAAAAGCAAGTAAAAATTT	58.232	29.630	0.00	0.00	0.00	1.82
645	675	7.927629	TGCATCTGAGAAAAGCAAGTAAAAATT	59.072	29.630	5.34	0.00	31.42	1.82
646	676	7.436118	TGCATCTGAGAAAAGCAAGTAAAAAT	58.564	30.769	5.34	0.00	31.42	1.82
647	677	6.804677	TGCATCTGAGAAAAGCAAGTAAAAA	58.195	32.000	5.34	0.00	31.42	1.94
648	678	6.389830	TGCATCTGAGAAAAGCAAGTAAAA	57.610	33.333	5.34	0.00	31.42	1.52
649	679	6.389830	TTGCATCTGAGAAAAGCAAGTAAA	57.610	33.333	13.74	0.00	39.95	2.01
650	680	6.389830	TTTGCATCTGAGAAAAGCAAGTAA	57.610	33.333	16.05	4.32	44.75	2.24
651	681	6.183360	TGTTTTGCATCTGAGAAAAGCAAGTA	60.183	34.615	16.05	9.11	44.75	2.24
652	682	4.924305	TTTGCATCTGAGAAAAGCAAGT	57.076	36.364	16.05	0.00	44.75	3.16
653	683	5.045215	TGTTTTGCATCTGAGAAAAGCAAG	58.955	37.500	16.05	0.00	44.75	4.01
654	684	5.008619	TGTTTTGCATCTGAGAAAAGCAA	57.991	34.783	13.74	13.74	42.74	3.91
655	685	4.652421	TGTTTTGCATCTGAGAAAAGCA	57.348	36.364	3.92	3.92	0.00	3.91
656	686	6.385033	AGTATGTTTTGCATCTGAGAAAAGC	58.615	36.000	0.00	0.00	38.94	3.51
657	687	8.224169	CAAGTATGTTTTGCATCTGAGAAAAG	57.776	34.615	0.00	0.00	38.94	2.27
715	745	9.868277	TGAGAAAAGCAAGTAAAATTTCTTCAA	57.132	25.926	0.00	0.00	39.66	2.69
716	746	9.868277	TTGAGAAAAGCAAGTAAAATTTCTTCA	57.132	25.926	0.00	0.00	39.66	3.02
753	783	9.474313	ACATGCCATATTTTAGAAAAGGAAGTA	57.526	29.630	0.00	0.00	0.00	2.24
758	788	7.917505	GTGAGACATGCCATATTTTAGAAAAGG	59.082	37.037	0.00	0.00	0.00	3.11
761	791	9.851686	ATAGTGAGACATGCCATATTTTAGAAA	57.148	29.630	0.00	0.00	0.00	2.52
763	793	9.851686	AAATAGTGAGACATGCCATATTTTAGA	57.148	29.630	0.00	0.00	0.00	2.10
766	796	8.970020	TGAAAATAGTGAGACATGCCATATTTT	58.030	29.630	0.00	2.51	35.29	1.82
774	852	3.065925	GCCCTGAAAATAGTGAGACATGC	59.934	47.826	0.00	0.00	0.00	4.06
780	858	7.121168	TGTTAATCAAGCCCTGAAAATAGTGAG	59.879	37.037	0.00	0.00	37.67	3.51
887	965	8.335532	CAAAATCTCTTTTGGTACTCATGGTA	57.664	34.615	0.00	0.00	44.88	3.25
967	1046	2.037772	CACCAACAGGAGTTAGCTGAGT	59.962	50.000	0.00	0.00	35.85	3.41
983	1062	4.209538	CCTCATGATATCCTTTGCACCAA	58.790	43.478	0.00	0.00	0.00	3.67
1090	1171	9.941664	GAACCTTGATTCTATAATGTCATTGTG	57.058	33.333	8.39	0.00	0.00	3.33
1134	1216	9.240734	AGCATTTTCTTTCTTATCATCTCTTGT	57.759	29.630	0.00	0.00	0.00	3.16
1161	1243	0.609957	TCTGCTCTTGCACCCCAATG	60.610	55.000	0.00	0.00	45.31	2.82
1162	1244	0.323178	CTCTGCTCTTGCACCCCAAT	60.323	55.000	0.00	0.00	45.31	3.16
1165	1247	1.078567	CTCTCTGCTCTTGCACCCC	60.079	63.158	0.00	0.00	45.31	4.95
1244	1326	8.896744	CCTCAATGTATTGTGTCAATCTAATGT	58.103	33.333	4.67	0.00	38.84	2.71
1275	1357	1.009997	ATCCCTCCTTGCCATTCCAA	58.990	50.000	0.00	0.00	0.00	3.53
1385	1468	1.362224	CTCCTGGAAACAAGGGAGGA	58.638	55.000	0.00	0.00	44.88	3.71
1397	1480	3.222603	GTTTTTCTTCCTTGCTCCTGGA	58.777	45.455	0.00	0.00	0.00	3.86
1484	1746	4.285775	TGTCCACAAGATCCACAAGTGATA	59.714	41.667	0.94	0.00	32.14	2.15
1529	1791	6.365520	GGTTCTATCCCCATTCTTGTTACAT	58.634	40.000	0.00	0.00	0.00	2.29
1572	1835	4.589908	TGCTTTCTCCCTCTTATTCCAAC	58.410	43.478	0.00	0.00	0.00	3.77
1579	1842	2.308866	CCCCTTTGCTTTCTCCCTCTTA	59.691	50.000	0.00	0.00	0.00	2.10
1600	1863	7.519649	GCAGTGGTCATATTAGCATCTCTTTTC	60.520	40.741	0.00	0.00	0.00	2.29
1608	1871	4.504514	CCAGAGCAGTGGTCATATTAGCAT	60.505	45.833	23.46	0.00	32.32	3.79
1620	1883	3.744660	AGTAAGAAAACCAGAGCAGTGG	58.255	45.455	2.86	2.86	44.01	4.00
1623	1886	6.377327	TCAAAAGTAAGAAAACCAGAGCAG	57.623	37.500	0.00	0.00	0.00	4.24
1741	2004	5.337652	GGAGCTTTAGACTTTCTTGGAGCTA	60.338	44.000	0.00	0.00	36.01	3.32
1753	2016	5.877564	GCATTAGTTCTTGGAGCTTTAGACT	59.122	40.000	0.00	0.00	0.00	3.24
1795	2058	1.072331	TCTTGAAGGCTGAGGTTGACC	59.928	52.381	0.00	0.00	0.00	4.02
1801	2064	3.594134	CTGTAGTTCTTGAAGGCTGAGG	58.406	50.000	0.00	0.00	0.00	3.86
1829	2092	0.315886	TGTGCCAGCATGAAAGCTTG	59.684	50.000	0.00	0.00	43.70	4.01
1830	2093	1.203994	GATGTGCCAGCATGAAAGCTT	59.796	47.619	0.00	0.00	43.70	3.74
1860	2123	4.214119	GCTCTGAAACTTGATGTTGTAGCA	59.786	41.667	0.00	0.00	39.13	3.49
1864	2127	3.817647	GGAGCTCTGAAACTTGATGTTGT	59.182	43.478	14.64	0.00	39.13	3.32
1888	2151	3.493524	GGATTAGAGCTACTTGCCACTCC	60.494	52.174	0.00	0.00	44.23	3.85
1898	2161	4.263771	AGCCTCTCCTAGGATTAGAGCTAC	60.264	50.000	22.29	14.36	43.19	3.58
1912	2175	1.309688	GTCTCCCTGAGCCTCTCCT	59.690	63.158	0.00	0.00	0.00	3.69
1922	2197	1.203523	CTCTCCTTGTTCGTCTCCCTG	59.796	57.143	0.00	0.00	0.00	4.45
1930	2205	0.247736	CCTGACCCTCTCCTTGTTCG	59.752	60.000	0.00	0.00	0.00	3.95
1936	2211	1.589399	CCTCTCCCTGACCCTCTCCT	61.589	65.000	0.00	0.00	0.00	3.69
1944	2219	1.002544	CCACTTGTTCCTCTCCCTGAC	59.997	57.143	0.00	0.00	0.00	3.51
1988	2278	9.508567	GAAATCATCTTTAGAAATTGCCACTAC	57.491	33.333	0.00	0.00	0.00	2.73
2041	2331	0.527565	GCTGGTTGCCATTACCACAG	59.472	55.000	0.00	0.00	40.65	3.66
2082	2378	5.468746	GCTCCACATACTACAAAAGTGACAA	59.531	40.000	0.00	0.00	39.39	3.18
2138	2434	3.030291	TGGTTCAAAAGTGACAGCCAAT	58.970	40.909	0.00	0.00	31.90	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.