Multiple sequence alignment - TraesCS7B01G218300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G218300 chr7B 100.000 6669 0 0 1 6669 403567589 403560921 0.000000e+00 12316.0
1 TraesCS7B01G218300 chr7B 99.004 5621 51 3 47 5667 403733389 403727774 0.000000e+00 10065.0
2 TraesCS7B01G218300 chr7B 96.341 3198 82 9 3502 6669 407940742 407937550 0.000000e+00 5225.0
3 TraesCS7B01G218300 chr7B 96.029 3198 78 12 3502 6669 408111678 408108500 0.000000e+00 5156.0
4 TraesCS7B01G218300 chr7B 97.611 2553 58 3 954 3505 408114263 408111713 0.000000e+00 4373.0
5 TraesCS7B01G218300 chr7B 97.498 2558 61 2 948 3505 407943331 407940777 0.000000e+00 4366.0
6 TraesCS7B01G218300 chr7B 97.928 1062 21 1 5608 6669 403727803 403726743 0.000000e+00 1838.0
7 TraesCS7B01G218300 chr7B 95.942 345 14 0 47 391 675866975 675867319 1.620000e-155 560.0
8 TraesCS7B01G218300 chr7B 79.412 612 111 11 3657 4260 383503358 383503962 1.030000e-112 418.0
9 TraesCS7B01G218300 chr7B 82.591 247 32 8 6056 6295 369600130 369599888 2.440000e-49 207.0
10 TraesCS7B01G218300 chr7B 81.893 243 37 3 6294 6529 654851128 654851370 1.470000e-46 198.0
11 TraesCS7B01G218300 chr7B 77.515 169 36 2 1113 1280 383502454 383502621 4.260000e-17 100.0
12 TraesCS7B01G218300 chr7B 100.000 30 0 0 5608 5637 403561952 403561923 1.000000e-03 56.5
13 TraesCS7B01G218300 chr7B 100.000 30 0 0 5638 5667 403561982 403561953 1.000000e-03 56.5
14 TraesCS7B01G218300 chr7B 100.000 30 0 0 5608 5637 407938605 407938576 1.000000e-03 56.5
15 TraesCS7B01G218300 chr7B 100.000 30 0 0 5638 5667 407938635 407938606 1.000000e-03 56.5
16 TraesCS7B01G218300 chr7B 100.000 30 0 0 5608 5637 408109546 408109517 1.000000e-03 56.5
17 TraesCS7B01G218300 chr7B 100.000 30 0 0 5638 5667 408109576 408109547 1.000000e-03 56.5
18 TraesCS7B01G218300 chr4D 95.660 530 23 0 422 951 353437846 353437317 0.000000e+00 852.0
19 TraesCS7B01G218300 chr4D 84.211 646 77 14 3657 4280 84777179 84776537 7.400000e-169 604.0
20 TraesCS7B01G218300 chr4D 84.722 216 24 5 6293 6500 360810239 360810453 2.440000e-49 207.0
21 TraesCS7B01G218300 chr4D 84.404 218 25 6 6294 6503 102247133 102247349 8.770000e-49 206.0
22 TraesCS7B01G218300 chr4D 82.700 237 30 8 6066 6295 208576902 208576670 4.080000e-47 200.0
23 TraesCS7B01G218300 chr4D 75.054 465 82 22 1064 1508 84779396 84778946 1.140000e-42 185.0
24 TraesCS7B01G218300 chr4D 100.000 57 0 0 3321 3377 401088551 401088495 9.150000e-19 106.0
25 TraesCS7B01G218300 chr2D 95.669 531 20 3 422 951 651042140 651042668 0.000000e+00 850.0
26 TraesCS7B01G218300 chr2D 85.238 210 24 3 6298 6500 158842249 158842458 6.780000e-50 209.0
27 TraesCS7B01G218300 chr2D 90.551 127 7 5 2453 2577 610294415 610294538 5.350000e-36 163.0
28 TraesCS7B01G218300 chr2D 85.106 141 18 3 6530 6669 116770144 116770282 2.510000e-29 141.0
29 TraesCS7B01G218300 chr2D 92.941 85 6 0 3134 3218 299891103 299891019 2.530000e-24 124.0
30 TraesCS7B01G218300 chr5D 95.094 530 23 3 422 951 563659626 563660152 0.000000e+00 832.0
31 TraesCS7B01G218300 chr5D 93.309 538 28 3 422 951 543618996 543618459 0.000000e+00 787.0
32 TraesCS7B01G218300 chr5D 89.313 131 11 3 2440 2568 97831854 97831725 1.920000e-35 161.0
33 TraesCS7B01G218300 chr6B 93.939 528 31 1 434 960 117657773 117657246 0.000000e+00 797.0
34 TraesCS7B01G218300 chr6D 93.774 530 31 2 422 951 300750452 300750979 0.000000e+00 795.0
35 TraesCS7B01G218300 chr6D 82.700 237 29 8 6066 6295 264261775 264261544 4.080000e-47 200.0
36 TraesCS7B01G218300 chrUn 100.000 405 0 0 2973 3377 478179416 478179820 0.000000e+00 749.0
37 TraesCS7B01G218300 chrUn 91.636 538 31 4 422 951 124469359 124469890 0.000000e+00 732.0
38 TraesCS7B01G218300 chrUn 91.280 539 32 5 422 951 124523852 124524384 0.000000e+00 721.0
39 TraesCS7B01G218300 chrUn 85.714 140 18 2 6530 6668 19190874 19190736 5.390000e-31 147.0
40 TraesCS7B01G218300 chrUn 100.000 57 0 0 3321 3377 277314102 277314046 9.150000e-19 106.0
41 TraesCS7B01G218300 chr1A 91.365 498 29 6 459 951 187602851 187602363 0.000000e+00 669.0
42 TraesCS7B01G218300 chr1A 84.906 212 25 3 6294 6498 537988839 537988628 2.440000e-49 207.0
43 TraesCS7B01G218300 chr1A 91.011 89 6 1 3131 3219 427981126 427981040 1.170000e-22 119.0
44 TraesCS7B01G218300 chr6A 90.982 499 30 7 459 951 396303886 396304375 0.000000e+00 658.0
45 TraesCS7B01G218300 chr6A 85.052 388 41 11 44 417 21582843 21582459 4.880000e-101 379.0
46 TraesCS7B01G218300 chr6A 83.688 141 21 2 6530 6669 2367290 2367151 1.510000e-26 132.0
47 TraesCS7B01G218300 chr5B 97.867 375 8 0 47 421 489825715 489825341 0.000000e+00 649.0
48 TraesCS7B01G218300 chr5B 77.994 618 111 19 3656 4260 674737756 674737151 1.370000e-96 364.0
49 TraesCS7B01G218300 chr5B 84.397 141 18 3 6530 6668 140958858 140958996 1.170000e-27 135.0
50 TraesCS7B01G218300 chr4B 83.856 638 81 14 3657 4273 121592532 121593168 7.450000e-164 588.0
51 TraesCS7B01G218300 chr4B 75.100 502 86 24 1058 1536 121590333 121590818 1.470000e-46 198.0
52 TraesCS7B01G218300 chr4B 88.889 135 11 4 2453 2584 592702144 592702011 5.350000e-36 163.0
53 TraesCS7B01G218300 chr4B 100.000 57 0 0 3321 3377 639449998 639450054 9.150000e-19 106.0
54 TraesCS7B01G218300 chr4B 90.909 77 3 3 3246 3322 627228356 627228428 4.260000e-17 100.0
55 TraesCS7B01G218300 chr4B 90.411 73 5 2 3252 3322 654180172 654180244 1.980000e-15 95.3
56 TraesCS7B01G218300 chr7A 79.260 622 113 14 3651 4260 438169563 438170180 2.880000e-113 420.0
57 TraesCS7B01G218300 chr7A 90.110 91 8 1 3134 3224 398924516 398924427 4.230000e-22 117.0
58 TraesCS7B01G218300 chr7A 77.515 169 36 2 1113 1280 438168667 438168834 4.260000e-17 100.0
59 TraesCS7B01G218300 chr7D 79.526 591 105 11 3680 4260 388022877 388023461 2.240000e-109 407.0
60 TraesCS7B01G218300 chr7D 84.896 384 42 10 47 416 531991653 531991272 2.270000e-99 374.0
61 TraesCS7B01G218300 chr7D 85.981 214 23 3 6294 6500 35927499 35927712 8.700000e-54 222.0
62 TraesCS7B01G218300 chr7D 82.700 237 29 8 6066 6295 403797299 403797530 4.080000e-47 200.0
63 TraesCS7B01G218300 chr7D 78.107 169 35 2 1113 1280 388021947 388022114 9.150000e-19 106.0
64 TraesCS7B01G218300 chr3D 86.154 390 38 11 47 422 564351738 564352125 2.240000e-109 407.0
65 TraesCS7B01G218300 chr5A 86.234 385 36 7 47 416 697547211 697547593 1.040000e-107 401.0
66 TraesCS7B01G218300 chr5A 85.496 393 38 13 44 421 665768033 665767645 6.270000e-105 392.0
67 TraesCS7B01G218300 chr5A 85.242 393 41 11 44 422 470919673 470919284 8.110000e-104 388.0
68 TraesCS7B01G218300 chr5A 89.189 111 9 3 3270 3377 439870261 439870151 1.170000e-27 135.0
69 TraesCS7B01G218300 chr1D 85.166 391 41 11 44 421 365972943 365972557 1.050000e-102 385.0
70 TraesCS7B01G218300 chr1D 82.700 237 29 8 6066 6295 159813510 159813279 4.080000e-47 200.0
71 TraesCS7B01G218300 chr1D 82.700 237 29 8 6066 6295 159820076 159819845 4.080000e-47 200.0
72 TraesCS7B01G218300 chr4A 86.136 339 28 12 3657 3977 497906928 497906591 1.380000e-91 348.0
73 TraesCS7B01G218300 chr4A 93.443 122 5 3 2453 2572 702148793 702148913 1.910000e-40 178.0
74 TraesCS7B01G218300 chr4A 78.388 273 56 2 1064 1336 497909411 497909142 2.470000e-39 174.0
75 TraesCS7B01G218300 chr4A 88.542 96 10 1 3121 3216 590111643 590111549 1.520000e-21 115.0
76 TraesCS7B01G218300 chr2B 93.277 119 5 3 2453 2569 723434233 723434350 8.890000e-39 172.0
77 TraesCS7B01G218300 chr2B 100.000 58 0 0 3321 3378 776550921 776550978 2.540000e-19 108.0
78 TraesCS7B01G218300 chr1B 89.552 134 10 4 2449 2580 332136280 332136149 4.140000e-37 167.0
79 TraesCS7B01G218300 chr1B 83.803 142 21 2 6529 6669 29783616 29783756 4.200000e-27 134.0
80 TraesCS7B01G218300 chr1B 86.667 90 6 5 3234 3321 630834258 630834173 1.980000e-15 95.3
81 TraesCS7B01G218300 chr3A 84.173 139 16 5 6533 6668 17034042 17033907 5.430000e-26 130.0
82 TraesCS7B01G218300 chr3B 92.135 89 7 0 3130 3218 680423386 680423298 7.020000e-25 126.0
83 TraesCS7B01G218300 chr2A 87.209 86 7 4 3236 3321 568280893 568280974 1.980000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G218300 chr7B 403560921 403567589 6668 True 12316.0 12316 100.00000 1 6669 1 chr7B.!!$R2 6668
1 TraesCS7B01G218300 chr7B 403726743 403733389 6646 True 5951.5 10065 98.46600 47 6669 2 chr7B.!!$R4 6622
2 TraesCS7B01G218300 chr7B 407937550 407943331 5781 True 2426.0 5225 98.45975 948 6669 4 chr7B.!!$R5 5721
3 TraesCS7B01G218300 chr7B 408108500 408114263 5763 True 2410.5 5156 98.41000 954 6669 4 chr7B.!!$R6 5715
4 TraesCS7B01G218300 chr7B 383502454 383503962 1508 False 259.0 418 78.46350 1113 4260 2 chr7B.!!$F3 3147
5 TraesCS7B01G218300 chr4D 353437317 353437846 529 True 852.0 852 95.66000 422 951 1 chr4D.!!$R2 529
6 TraesCS7B01G218300 chr4D 84776537 84779396 2859 True 394.5 604 79.63250 1064 4280 2 chr4D.!!$R4 3216
7 TraesCS7B01G218300 chr2D 651042140 651042668 528 False 850.0 850 95.66900 422 951 1 chr2D.!!$F4 529
8 TraesCS7B01G218300 chr5D 563659626 563660152 526 False 832.0 832 95.09400 422 951 1 chr5D.!!$F1 529
9 TraesCS7B01G218300 chr5D 543618459 543618996 537 True 787.0 787 93.30900 422 951 1 chr5D.!!$R2 529
10 TraesCS7B01G218300 chr6B 117657246 117657773 527 True 797.0 797 93.93900 434 960 1 chr6B.!!$R1 526
11 TraesCS7B01G218300 chr6D 300750452 300750979 527 False 795.0 795 93.77400 422 951 1 chr6D.!!$F1 529
12 TraesCS7B01G218300 chrUn 124469359 124469890 531 False 732.0 732 91.63600 422 951 1 chrUn.!!$F1 529
13 TraesCS7B01G218300 chrUn 124523852 124524384 532 False 721.0 721 91.28000 422 951 1 chrUn.!!$F2 529
14 TraesCS7B01G218300 chr5B 674737151 674737756 605 True 364.0 364 77.99400 3656 4260 1 chr5B.!!$R2 604
15 TraesCS7B01G218300 chr4B 121590333 121593168 2835 False 393.0 588 79.47800 1058 4273 2 chr4B.!!$F4 3215
16 TraesCS7B01G218300 chr7A 438168667 438170180 1513 False 260.0 420 78.38750 1113 4260 2 chr7A.!!$F1 3147
17 TraesCS7B01G218300 chr7D 388021947 388023461 1514 False 256.5 407 78.81650 1113 4260 2 chr7D.!!$F3 3147
18 TraesCS7B01G218300 chr4A 497906591 497909411 2820 True 261.0 348 82.26200 1064 3977 2 chr4A.!!$R2 2913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.735978 CGAGTTGCATGCCTCGTGTA 60.736 55.000 27.86 3.13 44.14 2.90 F
31 32 1.002366 GAGTTGCATGCCTCGTGTAG 58.998 55.000 16.68 0.00 0.00 2.74 F
1385 1421 0.394080 TGTGCGCCCATGATTCATCA 60.394 50.000 4.18 0.00 41.70 3.07 F
2333 2856 6.192044 GGGGATGGTATGGAAGTTTCTTTTA 58.808 40.000 0.00 0.00 0.00 1.52 F
3655 4636 0.755698 ACCTGGTGAGTCAGTGACGT 60.756 55.000 17.40 6.30 37.67 4.34 F
4003 5006 1.302832 CCGCCCATTCTCCTATGGC 60.303 63.158 0.00 0.00 43.11 4.40 F
4699 5707 1.337823 ACTGATGGACAAGCCGTACAC 60.338 52.381 0.00 0.00 42.90 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1307 0.250124 TGATCTTGTCGTTGCCCGTT 60.250 50.000 0.00 0.00 37.94 4.44 R
1498 1537 4.286032 ACAGGAGCTAATTCACCTTGTACA 59.714 41.667 0.00 0.00 0.00 2.90 R
2455 2978 0.032813 AGGTATTTCCGGACGGAGGA 60.033 55.000 13.64 7.39 46.06 3.71 R
4097 5100 5.414454 ACAATGACGCAACCATACAAATACT 59.586 36.000 0.00 0.00 0.00 2.12 R
4736 5744 3.340928 CTTCATGTGCTCCAGTGATTCA 58.659 45.455 0.00 0.00 0.00 2.57 R
4823 5831 5.068723 GCTGGTTCCTGTGTAGTATAGCTTA 59.931 44.000 0.00 0.00 0.00 3.09 R
6632 7701 0.324275 TGGGATGGGTAAAAGGCTGC 60.324 55.000 0.00 0.00 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.510615 GTCAAGTACGAGTTGCATGC 57.489 50.000 11.82 11.82 0.00 4.06
23 24 1.128692 GTCAAGTACGAGTTGCATGCC 59.871 52.381 16.68 0.00 0.00 4.40
24 25 1.001974 TCAAGTACGAGTTGCATGCCT 59.998 47.619 16.68 5.58 0.00 4.75
25 26 1.394917 CAAGTACGAGTTGCATGCCTC 59.605 52.381 16.68 14.20 0.00 4.70
28 29 2.780643 CGAGTTGCATGCCTCGTG 59.219 61.111 27.86 9.44 44.14 4.35
29 30 2.029288 CGAGTTGCATGCCTCGTGT 61.029 57.895 27.86 5.24 44.14 4.49
30 31 0.735978 CGAGTTGCATGCCTCGTGTA 60.736 55.000 27.86 3.13 44.14 2.90
31 32 1.002366 GAGTTGCATGCCTCGTGTAG 58.998 55.000 16.68 0.00 0.00 2.74
44 45 5.587033 CCTCGTGTAGGTTCTTGTTTTAC 57.413 43.478 0.00 0.00 40.94 2.01
45 46 5.051816 CCTCGTGTAGGTTCTTGTTTTACA 58.948 41.667 0.00 0.00 40.94 2.41
493 495 2.300723 TGCCTTCTTTTAGCTACCGTGA 59.699 45.455 0.00 0.00 0.00 4.35
667 678 2.797278 ATGGATGCCGAGGTCGACC 61.797 63.158 27.67 27.67 43.02 4.79
1027 1046 1.079543 GCGCCACTCACATCTCTGT 60.080 57.895 0.00 0.00 35.44 3.41
1129 1148 4.238514 GAGACTACGACATGAAGCTTTGT 58.761 43.478 0.00 1.01 0.00 2.83
1385 1421 0.394080 TGTGCGCCCATGATTCATCA 60.394 50.000 4.18 0.00 41.70 3.07
2333 2856 6.192044 GGGGATGGTATGGAAGTTTCTTTTA 58.808 40.000 0.00 0.00 0.00 1.52
2454 2977 8.806177 ACATTCCGACAAACCTTAAATTTTAC 57.194 30.769 0.00 0.00 0.00 2.01
2455 2978 8.635328 ACATTCCGACAAACCTTAAATTTTACT 58.365 29.630 0.00 0.00 0.00 2.24
2456 2979 9.124807 CATTCCGACAAACCTTAAATTTTACTC 57.875 33.333 0.00 0.00 0.00 2.59
2705 3335 4.083484 CCTTTGAGTTTGTATTCCGACACC 60.083 45.833 0.00 0.00 0.00 4.16
3655 4636 0.755698 ACCTGGTGAGTCAGTGACGT 60.756 55.000 17.40 6.30 37.67 4.34
4003 5006 1.302832 CCGCCCATTCTCCTATGGC 60.303 63.158 0.00 0.00 43.11 4.40
4118 5121 6.578944 TCTAGTATTTGTATGGTTGCGTCAT 58.421 36.000 0.00 0.00 0.00 3.06
4541 5549 5.859205 TGTGATAGAGAAGCTGCTGAATA 57.141 39.130 0.00 0.00 0.00 1.75
4699 5707 1.337823 ACTGATGGACAAGCCGTACAC 60.338 52.381 0.00 0.00 42.90 2.90
4736 5744 3.196685 GGACAGTGTCAGGAGAGCTAAAT 59.803 47.826 24.20 0.00 33.68 1.40
4823 5831 6.600882 ACAAGATTGAGGCTGATGAAAAAT 57.399 33.333 0.00 0.00 0.00 1.82
6139 7206 9.627123 ACTTGCCTTAAGCTTGATAACATATAA 57.373 29.630 9.86 0.00 44.23 0.98
6178 7245 6.676237 AATGTTGCATACGATACATTGTCA 57.324 33.333 10.58 0.00 39.15 3.58
6519 7588 7.979786 TGATCTTTACTCTCCCTCAATAGTT 57.020 36.000 0.00 0.00 0.00 2.24
6609 7678 2.158519 AGAAAATCACAAACCCGTCCCT 60.159 45.455 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.001974 AGGCATGCAACTCGTACTTGA 59.998 47.619 21.36 0.00 0.00 3.02
6 7 1.726853 GAGGCATGCAACTCGTACTT 58.273 50.000 21.36 0.00 0.00 2.24
12 13 1.002366 CTACACGAGGCATGCAACTC 58.998 55.000 21.36 16.24 0.00 3.01
13 14 0.391661 CCTACACGAGGCATGCAACT 60.392 55.000 21.36 8.25 38.96 3.16
14 15 2.089854 CCTACACGAGGCATGCAAC 58.910 57.895 21.36 11.50 38.96 4.17
15 16 4.615901 CCTACACGAGGCATGCAA 57.384 55.556 21.36 0.00 38.96 4.08
23 24 5.176958 CCTGTAAAACAAGAACCTACACGAG 59.823 44.000 0.00 0.00 0.00 4.18
24 25 5.051816 CCTGTAAAACAAGAACCTACACGA 58.948 41.667 0.00 0.00 0.00 4.35
25 26 4.812626 ACCTGTAAAACAAGAACCTACACG 59.187 41.667 0.00 0.00 0.00 4.49
26 27 7.790823 TTACCTGTAAAACAAGAACCTACAC 57.209 36.000 0.00 0.00 0.00 2.90
27 28 8.804912 TTTTACCTGTAAAACAAGAACCTACA 57.195 30.769 10.36 0.00 39.34 2.74
30 31 8.973182 TGAATTTTACCTGTAAAACAAGAACCT 58.027 29.630 15.33 0.00 44.68 3.50
31 32 9.589111 TTGAATTTTACCTGTAAAACAAGAACC 57.411 29.630 15.33 3.81 44.68 3.62
37 38 9.738832 GCTAGTTTGAATTTTACCTGTAAAACA 57.261 29.630 15.33 8.82 44.68 2.83
38 39 9.188588 GGCTAGTTTGAATTTTACCTGTAAAAC 57.811 33.333 15.33 6.73 44.68 2.43
39 40 8.915036 TGGCTAGTTTGAATTTTACCTGTAAAA 58.085 29.630 15.35 15.35 45.56 1.52
40 41 8.466617 TGGCTAGTTTGAATTTTACCTGTAAA 57.533 30.769 0.00 0.00 33.63 2.01
41 42 8.466617 TTGGCTAGTTTGAATTTTACCTGTAA 57.533 30.769 0.00 0.00 0.00 2.41
42 43 7.308951 GCTTGGCTAGTTTGAATTTTACCTGTA 60.309 37.037 0.00 0.00 0.00 2.74
43 44 6.516693 GCTTGGCTAGTTTGAATTTTACCTGT 60.517 38.462 0.00 0.00 0.00 4.00
44 45 5.863935 GCTTGGCTAGTTTGAATTTTACCTG 59.136 40.000 0.00 0.00 0.00 4.00
45 46 5.335661 CGCTTGGCTAGTTTGAATTTTACCT 60.336 40.000 0.00 0.00 0.00 3.08
493 495 3.510360 GTGTAGGACTGGTGTCACTACAT 59.490 47.826 19.71 0.00 46.14 2.29
667 678 4.530857 GGCGGAGGGTGACGGATG 62.531 72.222 0.00 0.00 0.00 3.51
1129 1148 5.246203 ACTGGAGTACTCATTCAGCAACTTA 59.754 40.000 23.91 0.00 0.00 2.24
1288 1307 0.250124 TGATCTTGTCGTTGCCCGTT 60.250 50.000 0.00 0.00 37.94 4.44
1385 1421 9.950680 CAAATTAAAGGACGCATACTGATAAAT 57.049 29.630 0.00 0.00 0.00 1.40
1498 1537 4.286032 ACAGGAGCTAATTCACCTTGTACA 59.714 41.667 0.00 0.00 0.00 2.90
2010 2530 7.782168 TCATACAAATAAGCACCAATAATCCCA 59.218 33.333 0.00 0.00 0.00 4.37
2333 2856 4.941873 GGTACCTAAGCTGCAACACTAAAT 59.058 41.667 4.06 0.00 0.00 1.40
2454 2977 0.388294 GGTATTTCCGGACGGAGGAG 59.612 60.000 13.64 0.00 46.06 3.69
2455 2978 0.032813 AGGTATTTCCGGACGGAGGA 60.033 55.000 13.64 7.39 46.06 3.71
2456 2979 0.104304 CAGGTATTTCCGGACGGAGG 59.896 60.000 13.64 0.00 46.06 4.30
2705 3335 5.186996 AGGTTTTAATTATCCATGCAGCG 57.813 39.130 0.00 0.00 0.00 5.18
3655 4636 9.743057 CCTATTGTACAACAAAAACAAGATCAA 57.257 29.630 11.22 0.00 41.96 2.57
4097 5100 5.414454 ACAATGACGCAACCATACAAATACT 59.586 36.000 0.00 0.00 0.00 2.12
4541 5549 4.142182 CCAATCACCACGGCAAGAAATATT 60.142 41.667 0.00 0.00 0.00 1.28
4736 5744 3.340928 CTTCATGTGCTCCAGTGATTCA 58.659 45.455 0.00 0.00 0.00 2.57
4823 5831 5.068723 GCTGGTTCCTGTGTAGTATAGCTTA 59.931 44.000 0.00 0.00 0.00 3.09
6019 7086 6.149973 CCAACCATGCGTTTATCATATCATCT 59.850 38.462 0.00 0.00 29.93 2.90
6139 7206 5.996513 TGCAACATTAATTTTTGCCTCACAT 59.003 32.000 21.09 0.00 44.14 3.21
6152 7219 8.835439 TGACAATGTATCGTATGCAACATTAAT 58.165 29.630 10.91 4.28 39.80 1.40
6178 7245 3.509575 TGTGAAGCTGTTTGACAAACCTT 59.490 39.130 24.58 20.63 40.67 3.50
6283 7350 6.772716 AGAACATGTCAAATCCTTAAGTGTGT 59.227 34.615 0.00 0.00 0.00 3.72
6519 7588 1.675310 CCATCTTGAAGTGGCGCCA 60.675 57.895 29.03 29.03 0.00 5.69
6609 7678 2.867855 GCAGACGGTGACAGGGTCA 61.868 63.158 8.15 0.00 40.50 4.02
6632 7701 0.324275 TGGGATGGGTAAAAGGCTGC 60.324 55.000 0.00 0.00 0.00 5.25
6633 7702 2.459555 ATGGGATGGGTAAAAGGCTG 57.540 50.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.