Multiple sequence alignment - TraesCS7B01G217600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G217600 chr7B 100.000 5457 0 0 1 5457 400944271 400938815 0.000000e+00 10078.0
1 TraesCS7B01G217600 chr7B 83.607 366 48 11 4612 4972 701154630 701154988 3.150000e-87 333.0
2 TraesCS7B01G217600 chr7D 95.491 2395 83 13 3077 5457 397208089 397205706 0.000000e+00 3801.0
3 TraesCS7B01G217600 chr7D 99.190 1234 9 1 1847 3079 397209369 397208136 0.000000e+00 2222.0
4 TraesCS7B01G217600 chr7D 93.862 1287 38 13 574 1847 397210674 397209416 0.000000e+00 1901.0
5 TraesCS7B01G217600 chr7D 90.081 494 37 7 1 486 613121739 613122228 9.980000e-177 630.0
6 TraesCS7B01G217600 chr7D 81.462 383 38 15 4622 4977 452972800 452972424 3.220000e-72 283.0
7 TraesCS7B01G217600 chr7D 79.186 221 42 4 4680 4898 500115150 500114932 3.410000e-32 150.0
8 TraesCS7B01G217600 chr7A 95.185 2409 80 10 3077 5457 452648966 452651366 0.000000e+00 3773.0
9 TraesCS7B01G217600 chr7A 98.465 1238 15 3 1844 3079 452647684 452648919 0.000000e+00 2178.0
10 TraesCS7B01G217600 chr7A 92.613 1083 39 11 775 1847 452646589 452647640 0.000000e+00 1519.0
11 TraesCS7B01G217600 chr7A 87.671 73 5 2 5038 5110 47011130 47011198 1.260000e-11 82.4
12 TraesCS7B01G217600 chr7A 87.671 73 4 3 5039 5110 36328895 36328963 4.530000e-11 80.5
13 TraesCS7B01G217600 chr7A 87.671 73 4 1 5038 5110 547963906 547963973 4.530000e-11 80.5
14 TraesCS7B01G217600 chr7A 100.000 28 0 0 572 599 452646561 452646588 1.000000e-02 52.8
15 TraesCS7B01G217600 chr3B 90.707 495 32 8 1 487 669325802 669325314 0.000000e+00 647.0
16 TraesCS7B01G217600 chr5B 90.323 496 36 8 1 487 609134871 609134379 1.660000e-179 640.0
17 TraesCS7B01G217600 chr5B 90.303 495 34 7 1 486 379338451 379337962 2.140000e-178 636.0
18 TraesCS7B01G217600 chr3A 90.303 495 36 8 1 486 604319537 604320028 5.960000e-179 638.0
19 TraesCS7B01G217600 chr6B 90.303 495 33 7 1 487 132876399 132876886 7.710000e-178 634.0
20 TraesCS7B01G217600 chr6B 90.081 494 37 6 1 486 129415297 129414808 9.980000e-177 630.0
21 TraesCS7B01G217600 chr2B 89.718 496 39 8 1 487 673927864 673927372 1.670000e-174 623.0
22 TraesCS7B01G217600 chr2B 83.508 382 44 9 4608 4975 139806292 139806668 6.770000e-89 339.0
23 TraesCS7B01G217600 chr1B 89.738 497 38 9 1 488 500916506 500916998 1.670000e-174 623.0
24 TraesCS7B01G217600 chr2D 82.415 381 53 11 4608 4976 197870945 197870567 2.450000e-83 320.0
25 TraesCS7B01G217600 chr4B 83.275 287 38 9 4612 4892 148916978 148916696 7.010000e-64 255.0
26 TraesCS7B01G217600 chr4B 82.828 198 26 7 4786 4977 581330072 581330267 2.610000e-38 171.0
27 TraesCS7B01G217600 chr4B 86.842 76 5 3 5035 5110 649753237 649753307 4.530000e-11 80.5
28 TraesCS7B01G217600 chr5A 80.685 321 45 13 4612 4921 697621199 697621513 3.290000e-57 233.0
29 TraesCS7B01G217600 chr5A 79.932 294 41 10 4692 4976 559035569 559035853 3.330000e-47 200.0
30 TraesCS7B01G217600 chr5A 89.706 68 3 2 5038 5105 439555478 439555541 3.500000e-12 84.2
31 TraesCS7B01G217600 chr4A 79.718 355 43 14 4613 4942 39527981 39527631 4.250000e-56 230.0
32 TraesCS7B01G217600 chr2A 76.615 325 62 12 4611 4925 195065315 195065635 3.380000e-37 167.0
33 TraesCS7B01G217600 chr6A 88.732 71 4 2 5043 5113 597049043 597048977 3.500000e-12 84.2
34 TraesCS7B01G217600 chr4D 87.838 74 3 2 5038 5110 49253412 49253344 1.260000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G217600 chr7B 400938815 400944271 5456 True 10078.000000 10078 100.00000 1 5457 1 chr7B.!!$R1 5456
1 TraesCS7B01G217600 chr7D 397205706 397210674 4968 True 2641.333333 3801 96.18100 574 5457 3 chr7D.!!$R3 4883
2 TraesCS7B01G217600 chr7A 452646561 452651366 4805 False 1880.700000 3773 96.56575 572 5457 4 chr7A.!!$F4 4885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.034477 GGGAGGGATTGGCTTCGAAA 60.034 55.000 0.00 0.00 0.00 3.46 F
277 278 0.036765 TTACAAGTGTGGCGCCCTAG 60.037 55.000 26.77 10.40 0.00 3.02 F
370 371 0.678048 CTAAGGGAAGGGTGCTGCAC 60.678 60.000 24.02 24.02 0.00 4.57 F
610 612 0.745845 GCACGCACATCTCCTGGATT 60.746 55.000 0.00 0.00 31.27 3.01 F
767 770 0.886563 TTCTTCTTCGTCGGGACTCC 59.113 55.000 0.00 0.00 0.00 3.85 F
1261 1265 1.064505 CATGCCTGCGGTCTTATGTTG 59.935 52.381 0.00 0.00 0.00 3.33 F
2468 2530 1.649321 TGGAGCAACAGAGGTCAGAT 58.351 50.000 0.00 0.00 37.74 2.90 F
3866 3978 1.468985 CAGTCTGAGGTGTCCGATCT 58.531 55.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1723 3.421919 TCCATTGACAGCATCTGTTCA 57.578 42.857 0.66 0.0 45.44 3.18 R
1788 1792 3.938963 TCGTGAAAATGAGGATACAAGGC 59.061 43.478 0.00 0.0 41.41 4.35 R
1805 1809 6.375736 TGCATAAGTTTTCCCAAATATCGTGA 59.624 34.615 0.00 0.0 0.00 4.35 R
2468 2530 6.299805 ACAGGAAGTACAGATGCATTTCTA 57.700 37.500 0.00 0.0 0.00 2.10 R
3125 3237 5.953548 GGCCCTTACCCTGTAAGATTAAAAA 59.046 40.000 14.04 0.0 34.07 1.94 R
3525 3637 1.829533 CCACCCTGCAAGCAACAGT 60.830 57.895 0.00 0.0 33.09 3.55 R
3955 4067 1.324740 CGTAGGGTGGGACCGAATCA 61.325 60.000 0.00 0.0 39.83 2.57 R
4957 5080 0.179189 GACGCGGATTTTTGGCTCTG 60.179 55.000 12.47 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.906720 CTATGAAGGAAAACGAGGGGA 57.093 47.619 0.00 0.00 0.00 4.81
22 23 4.423625 CTATGAAGGAAAACGAGGGGAT 57.576 45.455 0.00 0.00 0.00 3.85
23 24 2.781681 TGAAGGAAAACGAGGGGATC 57.218 50.000 0.00 0.00 0.00 3.36
35 36 3.945981 GAGGGGATCGAAGGAGATTAC 57.054 52.381 0.00 0.00 0.00 1.89
36 37 2.563620 GAGGGGATCGAAGGAGATTACC 59.436 54.545 0.00 0.00 0.00 2.85
37 38 2.180308 AGGGGATCGAAGGAGATTACCT 59.820 50.000 0.00 0.00 42.69 3.08
47 48 3.942926 AGGAGATTACCTTAAGGGAGGG 58.057 50.000 25.31 0.97 41.31 4.30
48 49 3.540687 AGGAGATTACCTTAAGGGAGGGA 59.459 47.826 25.31 2.42 41.31 4.20
49 50 4.175065 AGGAGATTACCTTAAGGGAGGGAT 59.825 45.833 25.31 7.81 41.31 3.85
50 51 4.914581 GGAGATTACCTTAAGGGAGGGATT 59.085 45.833 25.31 5.15 41.31 3.01
51 52 5.221945 GGAGATTACCTTAAGGGAGGGATTG 60.222 48.000 25.31 0.00 41.31 2.67
52 53 4.665483 AGATTACCTTAAGGGAGGGATTGG 59.335 45.833 25.31 0.00 41.31 3.16
53 54 0.927029 ACCTTAAGGGAGGGATTGGC 59.073 55.000 25.31 0.00 41.31 4.52
54 55 1.226311 CCTTAAGGGAGGGATTGGCT 58.774 55.000 14.25 0.00 37.23 4.75
55 56 1.570979 CCTTAAGGGAGGGATTGGCTT 59.429 52.381 14.25 0.00 37.23 4.35
56 57 2.423517 CCTTAAGGGAGGGATTGGCTTC 60.424 54.545 14.25 0.00 37.23 3.86
57 58 0.837272 TAAGGGAGGGATTGGCTTCG 59.163 55.000 0.00 0.00 0.00 3.79
58 59 0.914417 AAGGGAGGGATTGGCTTCGA 60.914 55.000 0.00 0.00 0.00 3.71
59 60 0.914417 AGGGAGGGATTGGCTTCGAA 60.914 55.000 0.00 0.00 0.00 3.71
60 61 0.034477 GGGAGGGATTGGCTTCGAAA 60.034 55.000 0.00 0.00 0.00 3.46
61 62 1.410224 GGGAGGGATTGGCTTCGAAAT 60.410 52.381 0.00 0.00 0.00 2.17
62 63 1.950216 GGAGGGATTGGCTTCGAAATC 59.050 52.381 0.00 0.00 32.98 2.17
66 67 2.458592 GATTGGCTTCGAAATCCACG 57.541 50.000 15.89 0.00 0.00 4.94
67 68 1.064060 GATTGGCTTCGAAATCCACGG 59.936 52.381 15.89 0.00 0.00 4.94
68 69 0.250553 TTGGCTTCGAAATCCACGGT 60.251 50.000 15.89 0.00 0.00 4.83
69 70 0.672401 TGGCTTCGAAATCCACGGTC 60.672 55.000 13.11 0.00 0.00 4.79
70 71 0.672401 GGCTTCGAAATCCACGGTCA 60.672 55.000 10.32 0.00 0.00 4.02
71 72 1.153353 GCTTCGAAATCCACGGTCAA 58.847 50.000 0.00 0.00 0.00 3.18
72 73 1.533731 GCTTCGAAATCCACGGTCAAA 59.466 47.619 0.00 0.00 0.00 2.69
73 74 2.161609 GCTTCGAAATCCACGGTCAAAT 59.838 45.455 0.00 0.00 0.00 2.32
74 75 3.372822 GCTTCGAAATCCACGGTCAAATA 59.627 43.478 0.00 0.00 0.00 1.40
75 76 4.726876 GCTTCGAAATCCACGGTCAAATAC 60.727 45.833 0.00 0.00 0.00 1.89
76 77 4.196626 TCGAAATCCACGGTCAAATACT 57.803 40.909 0.00 0.00 0.00 2.12
77 78 4.178540 TCGAAATCCACGGTCAAATACTC 58.821 43.478 0.00 0.00 0.00 2.59
78 79 3.308866 CGAAATCCACGGTCAAATACTCC 59.691 47.826 0.00 0.00 0.00 3.85
85 86 3.944422 CGGTCAAATACTCCGGATTTG 57.056 47.619 18.83 18.83 42.94 2.32
86 87 2.612212 CGGTCAAATACTCCGGATTTGG 59.388 50.000 22.62 7.87 42.21 3.28
87 88 3.680475 CGGTCAAATACTCCGGATTTGGA 60.680 47.826 22.62 10.80 42.21 3.53
88 89 4.266714 GGTCAAATACTCCGGATTTGGAA 58.733 43.478 22.62 7.48 42.21 3.53
89 90 4.335594 GGTCAAATACTCCGGATTTGGAAG 59.664 45.833 22.62 6.18 42.21 3.46
90 91 5.183228 GTCAAATACTCCGGATTTGGAAGA 58.817 41.667 22.62 7.56 42.21 2.87
91 92 5.823045 GTCAAATACTCCGGATTTGGAAGAT 59.177 40.000 22.62 0.00 42.21 2.40
92 93 6.318900 GTCAAATACTCCGGATTTGGAAGATT 59.681 38.462 22.62 4.70 42.21 2.40
93 94 6.889722 TCAAATACTCCGGATTTGGAAGATTT 59.110 34.615 22.62 9.70 42.21 2.17
94 95 6.699575 AATACTCCGGATTTGGAAGATTTG 57.300 37.500 3.57 0.00 37.64 2.32
95 96 4.301072 ACTCCGGATTTGGAAGATTTGA 57.699 40.909 3.57 0.00 37.64 2.69
96 97 4.860022 ACTCCGGATTTGGAAGATTTGAT 58.140 39.130 3.57 0.00 37.64 2.57
97 98 6.001449 ACTCCGGATTTGGAAGATTTGATA 57.999 37.500 3.57 0.00 37.64 2.15
98 99 6.423182 ACTCCGGATTTGGAAGATTTGATAA 58.577 36.000 3.57 0.00 37.64 1.75
99 100 6.543831 ACTCCGGATTTGGAAGATTTGATAAG 59.456 38.462 3.57 0.00 37.64 1.73
100 101 5.827797 TCCGGATTTGGAAGATTTGATAAGG 59.172 40.000 0.00 0.00 34.30 2.69
101 102 5.827797 CCGGATTTGGAAGATTTGATAAGGA 59.172 40.000 0.00 0.00 0.00 3.36
102 103 6.491403 CCGGATTTGGAAGATTTGATAAGGAT 59.509 38.462 0.00 0.00 0.00 3.24
103 104 7.014615 CCGGATTTGGAAGATTTGATAAGGATT 59.985 37.037 0.00 0.00 0.00 3.01
104 105 8.416329 CGGATTTGGAAGATTTGATAAGGATTT 58.584 33.333 0.00 0.00 0.00 2.17
105 106 9.538508 GGATTTGGAAGATTTGATAAGGATTTG 57.461 33.333 0.00 0.00 0.00 2.32
108 109 9.532494 TTTGGAAGATTTGATAAGGATTTGAGA 57.468 29.630 0.00 0.00 0.00 3.27
109 110 8.743085 TGGAAGATTTGATAAGGATTTGAGAG 57.257 34.615 0.00 0.00 0.00 3.20
110 111 7.776969 TGGAAGATTTGATAAGGATTTGAGAGG 59.223 37.037 0.00 0.00 0.00 3.69
111 112 7.230309 GGAAGATTTGATAAGGATTTGAGAGGG 59.770 40.741 0.00 0.00 0.00 4.30
112 113 6.608922 AGATTTGATAAGGATTTGAGAGGGG 58.391 40.000 0.00 0.00 0.00 4.79
113 114 4.796110 TTGATAAGGATTTGAGAGGGGG 57.204 45.455 0.00 0.00 0.00 5.40
129 130 3.120191 GGGGGAGAGGGGAAGAGA 58.880 66.667 0.00 0.00 0.00 3.10
130 131 1.074850 GGGGGAGAGGGGAAGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
131 132 1.074850 GGGGAGAGGGGAAGAGAGG 60.075 68.421 0.00 0.00 0.00 3.69
132 133 1.595058 GGGGAGAGGGGAAGAGAGGA 61.595 65.000 0.00 0.00 0.00 3.71
133 134 0.105709 GGGAGAGGGGAAGAGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
134 135 0.105709 GGAGAGGGGAAGAGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
135 136 0.105709 GAGAGGGGAAGAGAGGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
136 137 1.074850 GAGGGGAAGAGAGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
137 138 2.770475 GGGGAAGAGAGGAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
138 139 3.157949 GGGAAGAGAGGAGGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
139 140 3.855853 GGAAGAGAGGAGGGGCGC 61.856 72.222 0.00 0.00 0.00 6.53
140 141 3.077556 GAAGAGAGGAGGGGCGCA 61.078 66.667 10.83 0.00 0.00 6.09
141 142 2.607750 AAGAGAGGAGGGGCGCAA 60.608 61.111 10.83 0.00 0.00 4.85
142 143 2.585791 GAAGAGAGGAGGGGCGCAAG 62.586 65.000 10.83 0.00 43.44 4.01
143 144 4.168291 GAGAGGAGGGGCGCAAGG 62.168 72.222 10.83 0.00 38.28 3.61
153 154 3.681473 GCGCAAGGCTAAGGGTTT 58.319 55.556 0.30 0.00 39.11 3.27
154 155 1.212751 GCGCAAGGCTAAGGGTTTG 59.787 57.895 0.30 0.00 39.11 2.93
155 156 1.883021 CGCAAGGCTAAGGGTTTGG 59.117 57.895 0.00 0.00 0.00 3.28
156 157 1.595093 CGCAAGGCTAAGGGTTTGGG 61.595 60.000 0.00 0.00 0.00 4.12
157 158 0.541998 GCAAGGCTAAGGGTTTGGGT 60.542 55.000 0.00 0.00 0.00 4.51
158 159 1.256812 CAAGGCTAAGGGTTTGGGTG 58.743 55.000 0.00 0.00 0.00 4.61
159 160 0.114364 AAGGCTAAGGGTTTGGGTGG 59.886 55.000 0.00 0.00 0.00 4.61
160 161 1.304962 GGCTAAGGGTTTGGGTGGG 60.305 63.158 0.00 0.00 0.00 4.61
161 162 1.304962 GCTAAGGGTTTGGGTGGGG 60.305 63.158 0.00 0.00 0.00 4.96
162 163 2.089116 GCTAAGGGTTTGGGTGGGGT 62.089 60.000 0.00 0.00 0.00 4.95
163 164 0.251608 CTAAGGGTTTGGGTGGGGTG 60.252 60.000 0.00 0.00 0.00 4.61
164 165 1.731324 TAAGGGTTTGGGTGGGGTGG 61.731 60.000 0.00 0.00 0.00 4.61
165 166 4.631740 GGGTTTGGGTGGGGTGGG 62.632 72.222 0.00 0.00 0.00 4.61
166 167 4.631740 GGTTTGGGTGGGGTGGGG 62.632 72.222 0.00 0.00 0.00 4.96
167 168 4.631740 GTTTGGGTGGGGTGGGGG 62.632 72.222 0.00 0.00 0.00 5.40
173 174 4.596585 GTGGGGTGGGGGTGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
178 179 4.596585 GTGGGGGTGTGTGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
184 185 4.596585 GTGTGTGGGGTGGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
196 197 4.348495 GGGGTGGGAGGGGAGTGA 62.348 72.222 0.00 0.00 0.00 3.41
197 198 2.689034 GGGTGGGAGGGGAGTGAG 60.689 72.222 0.00 0.00 0.00 3.51
198 199 2.689034 GGTGGGAGGGGAGTGAGG 60.689 72.222 0.00 0.00 0.00 3.86
199 200 2.689034 GTGGGAGGGGAGTGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
200 201 3.208592 TGGGAGGGGAGTGAGGGT 61.209 66.667 0.00 0.00 0.00 4.34
201 202 2.689034 GGGAGGGGAGTGAGGGTG 60.689 72.222 0.00 0.00 0.00 4.61
202 203 2.689034 GGAGGGGAGTGAGGGTGG 60.689 72.222 0.00 0.00 0.00 4.61
203 204 2.689034 GAGGGGAGTGAGGGTGGG 60.689 72.222 0.00 0.00 0.00 4.61
204 205 4.354943 AGGGGAGTGAGGGTGGGG 62.355 72.222 0.00 0.00 0.00 4.96
208 209 3.721706 GAGTGAGGGTGGGGCCAG 61.722 72.222 4.39 0.00 39.65 4.85
215 216 3.339093 GGTGGGGCCAGCCTAAGT 61.339 66.667 4.39 0.00 38.38 2.24
216 217 2.044946 GTGGGGCCAGCCTAAGTG 60.045 66.667 4.39 0.00 36.10 3.16
217 218 3.338250 TGGGGCCAGCCTAAGTGG 61.338 66.667 4.39 0.00 38.21 4.00
237 238 2.633657 CACAGACAGTGCAACGCC 59.366 61.111 0.00 0.00 45.86 5.68
238 239 1.889105 CACAGACAGTGCAACGCCT 60.889 57.895 0.00 0.00 45.86 5.52
239 240 0.599991 CACAGACAGTGCAACGCCTA 60.600 55.000 0.00 0.00 45.86 3.93
240 241 0.105964 ACAGACAGTGCAACGCCTAA 59.894 50.000 0.00 0.00 45.86 2.69
241 242 0.792640 CAGACAGTGCAACGCCTAAG 59.207 55.000 0.00 0.00 45.86 2.18
242 243 0.679505 AGACAGTGCAACGCCTAAGA 59.320 50.000 0.00 0.00 45.86 2.10
243 244 0.790814 GACAGTGCAACGCCTAAGAC 59.209 55.000 0.00 0.00 45.86 3.01
244 245 0.105964 ACAGTGCAACGCCTAAGACA 59.894 50.000 0.00 0.00 45.86 3.41
245 246 0.512952 CAGTGCAACGCCTAAGACAC 59.487 55.000 0.00 0.00 45.86 3.67
246 247 0.105964 AGTGCAACGCCTAAGACACA 59.894 50.000 0.00 0.00 45.86 3.72
247 248 0.512952 GTGCAACGCCTAAGACACAG 59.487 55.000 0.00 0.00 0.00 3.66
248 249 0.602638 TGCAACGCCTAAGACACAGG 60.603 55.000 0.00 0.00 36.16 4.00
253 254 4.192000 CCTAAGACACAGGCGCTG 57.808 61.111 7.64 6.31 37.52 5.18
254 255 2.103042 CCTAAGACACAGGCGCTGC 61.103 63.158 7.64 0.00 34.37 5.25
255 256 1.374631 CTAAGACACAGGCGCTGCA 60.375 57.895 7.64 0.00 34.37 4.41
256 257 1.630244 CTAAGACACAGGCGCTGCAC 61.630 60.000 7.64 0.00 34.37 4.57
257 258 2.376228 TAAGACACAGGCGCTGCACA 62.376 55.000 7.64 0.00 34.37 4.57
258 259 3.052082 GACACAGGCGCTGCACAT 61.052 61.111 7.64 0.00 34.37 3.21
259 260 2.595463 ACACAGGCGCTGCACATT 60.595 55.556 7.64 0.00 34.37 2.71
260 261 1.298157 GACACAGGCGCTGCACATTA 61.298 55.000 7.64 0.00 34.37 1.90
261 262 1.135315 CACAGGCGCTGCACATTAC 59.865 57.895 7.64 0.00 34.37 1.89
262 263 1.302431 ACAGGCGCTGCACATTACA 60.302 52.632 7.64 0.00 34.37 2.41
263 264 0.888736 ACAGGCGCTGCACATTACAA 60.889 50.000 7.64 0.00 34.37 2.41
264 265 0.179181 CAGGCGCTGCACATTACAAG 60.179 55.000 7.64 0.00 0.00 3.16
265 266 0.606401 AGGCGCTGCACATTACAAGT 60.606 50.000 7.64 0.00 0.00 3.16
266 267 0.454957 GGCGCTGCACATTACAAGTG 60.455 55.000 7.64 0.00 39.92 3.16
267 268 0.238289 GCGCTGCACATTACAAGTGT 59.762 50.000 0.00 0.00 39.17 3.55
269 270 1.400113 CGCTGCACATTACAAGTGTGG 60.400 52.381 8.17 0.00 45.39 4.17
270 271 1.666888 GCTGCACATTACAAGTGTGGC 60.667 52.381 8.17 1.07 45.39 5.01
271 272 0.590682 TGCACATTACAAGTGTGGCG 59.409 50.000 8.17 0.00 45.39 5.69
272 273 0.729140 GCACATTACAAGTGTGGCGC 60.729 55.000 0.00 0.00 45.39 6.53
273 274 0.109781 CACATTACAAGTGTGGCGCC 60.110 55.000 22.73 22.73 42.43 6.53
274 275 1.241315 ACATTACAAGTGTGGCGCCC 61.241 55.000 26.77 16.24 0.00 6.13
275 276 0.960364 CATTACAAGTGTGGCGCCCT 60.960 55.000 26.77 11.52 0.00 5.19
276 277 0.616371 ATTACAAGTGTGGCGCCCTA 59.384 50.000 26.77 10.27 0.00 3.53
277 278 0.036765 TTACAAGTGTGGCGCCCTAG 60.037 55.000 26.77 10.40 0.00 3.02
278 279 2.515996 TACAAGTGTGGCGCCCTAGC 62.516 60.000 26.77 12.20 0.00 3.42
294 295 3.503363 GCCTTAGGCGCTGCACAG 61.503 66.667 7.77 0.00 39.62 3.66
306 307 3.730761 GCACAGCTGCGTGAAGGG 61.731 66.667 22.28 3.56 39.34 3.95
307 308 3.730761 CACAGCTGCGTGAAGGGC 61.731 66.667 15.27 0.00 39.34 5.19
315 316 3.726517 CGTGAAGGGCCGCAACTG 61.727 66.667 0.00 0.00 0.00 3.16
316 317 3.365265 GTGAAGGGCCGCAACTGG 61.365 66.667 0.00 0.00 0.00 4.00
317 318 3.565214 TGAAGGGCCGCAACTGGA 61.565 61.111 0.00 0.00 0.00 3.86
318 319 3.056328 GAAGGGCCGCAACTGGAC 61.056 66.667 0.00 0.00 35.71 4.02
323 324 4.329545 GCCGCAACTGGACCAGGA 62.330 66.667 25.34 0.00 35.51 3.86
324 325 2.358737 CCGCAACTGGACCAGGAC 60.359 66.667 25.34 12.73 35.51 3.85
325 326 2.743718 CGCAACTGGACCAGGACT 59.256 61.111 25.34 6.81 35.51 3.85
326 327 1.669115 CGCAACTGGACCAGGACTG 60.669 63.158 25.34 18.62 35.51 3.51
327 328 1.968540 GCAACTGGACCAGGACTGC 60.969 63.158 25.34 23.53 35.51 4.40
328 329 1.302832 CAACTGGACCAGGACTGCC 60.303 63.158 25.34 0.00 35.51 4.85
329 330 1.770110 AACTGGACCAGGACTGCCA 60.770 57.895 25.34 0.00 35.51 4.92
330 331 2.056906 AACTGGACCAGGACTGCCAC 62.057 60.000 25.34 0.00 35.51 5.01
331 332 3.596066 CTGGACCAGGACTGCCACG 62.596 68.421 14.26 0.00 36.29 4.94
333 334 4.008933 GACCAGGACTGCCACGCT 62.009 66.667 0.00 0.00 36.29 5.07
334 335 4.320456 ACCAGGACTGCCACGCTG 62.320 66.667 0.00 0.00 36.29 5.18
353 354 3.449227 CAGGAGGTGCGACGCCTA 61.449 66.667 18.69 0.00 45.19 3.93
354 355 2.678934 AGGAGGTGCGACGCCTAA 60.679 61.111 18.69 0.00 45.19 2.69
355 356 2.202756 GGAGGTGCGACGCCTAAG 60.203 66.667 18.69 0.00 45.19 2.18
356 357 2.202756 GAGGTGCGACGCCTAAGG 60.203 66.667 18.69 0.00 45.19 2.69
357 358 3.718210 GAGGTGCGACGCCTAAGGG 62.718 68.421 18.69 0.00 45.19 3.95
358 359 3.766691 GGTGCGACGCCTAAGGGA 61.767 66.667 18.69 0.00 33.58 4.20
359 360 2.263540 GTGCGACGCCTAAGGGAA 59.736 61.111 18.69 0.00 33.58 3.97
360 361 1.810030 GTGCGACGCCTAAGGGAAG 60.810 63.158 18.69 0.00 33.58 3.46
361 362 2.202892 GCGACGCCTAAGGGAAGG 60.203 66.667 9.14 0.00 39.87 3.46
362 363 2.499685 CGACGCCTAAGGGAAGGG 59.500 66.667 0.00 0.00 37.11 3.95
363 364 2.356780 CGACGCCTAAGGGAAGGGT 61.357 63.158 0.00 0.00 37.11 4.34
364 365 1.221021 GACGCCTAAGGGAAGGGTG 59.779 63.158 0.00 0.00 37.11 4.61
365 366 2.124695 CGCCTAAGGGAAGGGTGC 60.125 66.667 0.00 0.00 37.11 5.01
366 367 2.670148 CGCCTAAGGGAAGGGTGCT 61.670 63.158 0.00 0.00 37.11 4.40
367 368 1.077429 GCCTAAGGGAAGGGTGCTG 60.077 63.158 0.00 0.00 37.11 4.41
368 369 1.077429 CCTAAGGGAAGGGTGCTGC 60.077 63.158 0.00 0.00 32.55 5.25
369 370 1.685224 CTAAGGGAAGGGTGCTGCA 59.315 57.895 0.00 0.00 0.00 4.41
370 371 0.678048 CTAAGGGAAGGGTGCTGCAC 60.678 60.000 24.02 24.02 0.00 4.57
371 372 1.422977 TAAGGGAAGGGTGCTGCACA 61.423 55.000 31.35 7.31 35.86 4.57
379 380 3.972227 GTGCTGCACACTAGGGTG 58.028 61.111 26.70 21.29 46.41 4.61
389 390 4.286320 CTAGGGTGCGGCGCCTAG 62.286 72.222 30.82 25.97 34.29 3.02
401 402 4.743975 GCCTAGCTATCGGGCGCC 62.744 72.222 21.18 21.18 36.37 6.53
402 403 3.303135 CCTAGCTATCGGGCGCCA 61.303 66.667 30.85 9.36 37.29 5.69
403 404 2.049063 CTAGCTATCGGGCGCCAC 60.049 66.667 30.85 16.91 37.29 5.01
404 405 2.520982 TAGCTATCGGGCGCCACT 60.521 61.111 30.85 16.64 37.29 4.00
405 406 2.479412 CTAGCTATCGGGCGCCACTC 62.479 65.000 30.85 10.33 37.29 3.51
407 408 3.592814 CTATCGGGCGCCACTCGA 61.593 66.667 30.85 27.48 41.67 4.04
408 409 3.133767 CTATCGGGCGCCACTCGAA 62.134 63.158 30.85 16.25 41.67 3.71
409 410 2.622903 CTATCGGGCGCCACTCGAAA 62.623 60.000 30.85 8.13 41.67 3.46
410 411 2.622903 TATCGGGCGCCACTCGAAAG 62.623 60.000 30.85 8.33 41.67 2.62
423 424 3.813529 CTCGAAAGGGTTAGCAAAGTG 57.186 47.619 0.00 0.00 0.00 3.16
424 425 3.399330 CTCGAAAGGGTTAGCAAAGTGA 58.601 45.455 0.00 0.00 0.00 3.41
425 426 3.811083 TCGAAAGGGTTAGCAAAGTGAA 58.189 40.909 0.00 0.00 0.00 3.18
426 427 4.200874 TCGAAAGGGTTAGCAAAGTGAAA 58.799 39.130 0.00 0.00 0.00 2.69
427 428 4.825085 TCGAAAGGGTTAGCAAAGTGAAAT 59.175 37.500 0.00 0.00 0.00 2.17
428 429 5.300792 TCGAAAGGGTTAGCAAAGTGAAATT 59.699 36.000 0.00 0.00 0.00 1.82
429 430 5.983118 CGAAAGGGTTAGCAAAGTGAAATTT 59.017 36.000 0.00 0.00 0.00 1.82
430 431 6.478673 CGAAAGGGTTAGCAAAGTGAAATTTT 59.521 34.615 0.00 0.00 0.00 1.82
431 432 7.011016 CGAAAGGGTTAGCAAAGTGAAATTTTT 59.989 33.333 0.00 0.00 0.00 1.94
449 450 4.647424 TTTTTCGTGAGCAGGTCATTTT 57.353 36.364 5.40 0.00 37.56 1.82
450 451 3.624326 TTTCGTGAGCAGGTCATTTTG 57.376 42.857 5.40 0.00 37.56 2.44
451 452 2.254546 TCGTGAGCAGGTCATTTTGT 57.745 45.000 5.40 0.00 37.56 2.83
452 453 1.872952 TCGTGAGCAGGTCATTTTGTG 59.127 47.619 5.40 0.00 37.56 3.33
453 454 1.872952 CGTGAGCAGGTCATTTTGTGA 59.127 47.619 5.40 0.00 37.56 3.58
454 455 2.485426 CGTGAGCAGGTCATTTTGTGAT 59.515 45.455 5.40 0.00 39.48 3.06
455 456 3.058016 CGTGAGCAGGTCATTTTGTGATT 60.058 43.478 5.40 0.00 39.48 2.57
456 457 4.557296 CGTGAGCAGGTCATTTTGTGATTT 60.557 41.667 5.40 0.00 39.48 2.17
457 458 4.682860 GTGAGCAGGTCATTTTGTGATTTG 59.317 41.667 5.40 0.00 39.48 2.32
458 459 4.583907 TGAGCAGGTCATTTTGTGATTTGA 59.416 37.500 0.00 0.00 39.48 2.69
459 460 5.244402 TGAGCAGGTCATTTTGTGATTTGAT 59.756 36.000 0.00 0.00 39.48 2.57
460 461 6.105397 AGCAGGTCATTTTGTGATTTGATT 57.895 33.333 0.00 0.00 39.48 2.57
461 462 6.527423 AGCAGGTCATTTTGTGATTTGATTT 58.473 32.000 0.00 0.00 39.48 2.17
462 463 6.425721 AGCAGGTCATTTTGTGATTTGATTTG 59.574 34.615 0.00 0.00 39.48 2.32
463 464 6.347888 GCAGGTCATTTTGTGATTTGATTTGG 60.348 38.462 0.00 0.00 39.48 3.28
464 465 6.148150 CAGGTCATTTTGTGATTTGATTTGGG 59.852 38.462 0.00 0.00 39.48 4.12
465 466 5.412286 GGTCATTTTGTGATTTGATTTGGGG 59.588 40.000 0.00 0.00 39.48 4.96
466 467 5.997129 GTCATTTTGTGATTTGATTTGGGGT 59.003 36.000 0.00 0.00 39.48 4.95
467 468 6.147656 GTCATTTTGTGATTTGATTTGGGGTC 59.852 38.462 0.00 0.00 39.48 4.46
468 469 5.620738 TTTTGTGATTTGATTTGGGGTCA 57.379 34.783 0.00 0.00 0.00 4.02
469 470 5.620738 TTTGTGATTTGATTTGGGGTCAA 57.379 34.783 0.00 0.00 34.01 3.18
470 471 5.620738 TTGTGATTTGATTTGGGGTCAAA 57.379 34.783 4.06 4.06 46.16 2.69
483 484 6.528537 TTGGGGTCAAATATGTGATTTCTG 57.471 37.500 0.00 0.00 0.00 3.02
484 485 4.402155 TGGGGTCAAATATGTGATTTCTGC 59.598 41.667 0.00 0.00 0.00 4.26
485 486 4.202151 GGGGTCAAATATGTGATTTCTGCC 60.202 45.833 0.00 0.00 0.00 4.85
486 487 4.498009 GGGTCAAATATGTGATTTCTGCCG 60.498 45.833 0.00 0.00 0.00 5.69
487 488 4.335315 GGTCAAATATGTGATTTCTGCCGA 59.665 41.667 0.00 0.00 0.00 5.54
488 489 5.009010 GGTCAAATATGTGATTTCTGCCGAT 59.991 40.000 0.00 0.00 0.00 4.18
489 490 6.460123 GGTCAAATATGTGATTTCTGCCGATT 60.460 38.462 0.00 0.00 0.00 3.34
490 491 6.974622 GTCAAATATGTGATTTCTGCCGATTT 59.025 34.615 0.00 0.00 0.00 2.17
491 492 7.489113 GTCAAATATGTGATTTCTGCCGATTTT 59.511 33.333 0.00 0.00 0.00 1.82
492 493 8.681806 TCAAATATGTGATTTCTGCCGATTTTA 58.318 29.630 0.00 0.00 0.00 1.52
493 494 8.961092 CAAATATGTGATTTCTGCCGATTTTAG 58.039 33.333 0.00 0.00 0.00 1.85
494 495 7.807977 ATATGTGATTTCTGCCGATTTTAGT 57.192 32.000 0.00 0.00 0.00 2.24
495 496 5.545658 TGTGATTTCTGCCGATTTTAGTC 57.454 39.130 0.00 0.00 0.00 2.59
496 497 5.245531 TGTGATTTCTGCCGATTTTAGTCT 58.754 37.500 0.00 0.00 0.00 3.24
497 498 5.705441 TGTGATTTCTGCCGATTTTAGTCTT 59.295 36.000 0.00 0.00 0.00 3.01
498 499 6.206634 TGTGATTTCTGCCGATTTTAGTCTTT 59.793 34.615 0.00 0.00 0.00 2.52
499 500 7.389330 TGTGATTTCTGCCGATTTTAGTCTTTA 59.611 33.333 0.00 0.00 0.00 1.85
500 501 7.692705 GTGATTTCTGCCGATTTTAGTCTTTAC 59.307 37.037 0.00 0.00 0.00 2.01
501 502 7.389330 TGATTTCTGCCGATTTTAGTCTTTACA 59.611 33.333 0.00 0.00 0.00 2.41
502 503 6.476243 TTCTGCCGATTTTAGTCTTTACAC 57.524 37.500 0.00 0.00 0.00 2.90
503 504 5.790593 TCTGCCGATTTTAGTCTTTACACT 58.209 37.500 0.00 0.00 0.00 3.55
504 505 5.637810 TCTGCCGATTTTAGTCTTTACACTG 59.362 40.000 0.00 0.00 0.00 3.66
505 506 4.693566 TGCCGATTTTAGTCTTTACACTGG 59.306 41.667 0.00 0.00 0.00 4.00
506 507 4.094442 GCCGATTTTAGTCTTTACACTGGG 59.906 45.833 0.00 0.00 0.00 4.45
507 508 5.243207 CCGATTTTAGTCTTTACACTGGGT 58.757 41.667 0.00 0.00 0.00 4.51
508 509 6.400568 CCGATTTTAGTCTTTACACTGGGTA 58.599 40.000 0.00 0.00 0.00 3.69
509 510 6.312180 CCGATTTTAGTCTTTACACTGGGTAC 59.688 42.308 0.00 0.00 0.00 3.34
510 511 6.869913 CGATTTTAGTCTTTACACTGGGTACA 59.130 38.462 0.00 0.00 0.00 2.90
519 520 3.121030 CTGGGTACAGCAGCGCAC 61.121 66.667 11.47 0.00 38.01 5.34
523 524 3.711842 GTACAGCAGCGCACGCAA 61.712 61.111 21.77 6.11 44.88 4.85
524 525 3.413861 TACAGCAGCGCACGCAAG 61.414 61.111 21.77 15.98 44.88 4.01
550 551 4.626081 GCACACGGCACACCTCCT 62.626 66.667 0.00 0.00 43.97 3.69
551 552 2.666190 CACACGGCACACCTCCTG 60.666 66.667 0.00 0.00 0.00 3.86
552 553 4.626081 ACACGGCACACCTCCTGC 62.626 66.667 0.00 0.00 0.00 4.85
557 558 2.674380 GCACACCTCCTGCCCAAG 60.674 66.667 0.00 0.00 0.00 3.61
558 559 2.674380 CACACCTCCTGCCCAAGC 60.674 66.667 0.00 0.00 40.48 4.01
560 561 2.674380 CACCTCCTGCCCAAGCAC 60.674 66.667 0.00 0.00 46.52 4.40
561 562 4.335647 ACCTCCTGCCCAAGCACG 62.336 66.667 0.00 0.00 46.52 5.34
563 564 4.711949 CTCCTGCCCAAGCACGCT 62.712 66.667 0.00 0.00 46.52 5.07
607 609 3.190849 CGCACGCACATCTCCTGG 61.191 66.667 0.00 0.00 0.00 4.45
610 612 0.745845 GCACGCACATCTCCTGGATT 60.746 55.000 0.00 0.00 31.27 3.01
645 648 2.657944 CTCGCCTCTGCATCTCGC 60.658 66.667 0.00 0.00 42.89 5.03
767 770 0.886563 TTCTTCTTCGTCGGGACTCC 59.113 55.000 0.00 0.00 0.00 3.85
770 773 1.303799 TTCTTCGTCGGGACTCCTCG 61.304 60.000 0.00 0.00 0.00 4.63
772 775 1.584380 CTTCGTCGGGACTCCTCGTT 61.584 60.000 0.00 0.00 32.78 3.85
773 776 1.174712 TTCGTCGGGACTCCTCGTTT 61.175 55.000 0.00 0.00 32.78 3.60
807 810 4.038080 GTCCGCAACCTTTGGCCG 62.038 66.667 0.00 0.00 0.00 6.13
968 971 5.848036 CGCTGTGTCACTTGAATTTTTCTAG 59.152 40.000 4.27 0.00 38.28 2.43
1124 1128 6.946340 AGTCTTTTGTTTTCAAGGTTTGGAT 58.054 32.000 0.00 0.00 41.09 3.41
1261 1265 1.064505 CATGCCTGCGGTCTTATGTTG 59.935 52.381 0.00 0.00 0.00 3.33
1264 1268 2.093181 TGCCTGCGGTCTTATGTTGTAT 60.093 45.455 0.00 0.00 0.00 2.29
1305 1309 3.451178 CCCCTGCACAACTACATAGTACT 59.549 47.826 0.00 0.00 34.99 2.73
1306 1310 4.081087 CCCCTGCACAACTACATAGTACTT 60.081 45.833 0.00 0.00 34.99 2.24
1307 1311 5.128171 CCCCTGCACAACTACATAGTACTTA 59.872 44.000 0.00 0.00 34.99 2.24
1308 1312 6.040878 CCCTGCACAACTACATAGTACTTAC 58.959 44.000 0.00 0.00 34.99 2.34
1309 1313 6.127423 CCCTGCACAACTACATAGTACTTACT 60.127 42.308 0.00 0.00 40.24 2.24
1310 1314 7.067859 CCCTGCACAACTACATAGTACTTACTA 59.932 40.741 0.00 0.00 42.43 1.82
1312 1316 9.850628 CTGCACAACTACATAGTACTTACTAAA 57.149 33.333 0.00 0.00 41.64 1.85
1313 1317 9.630098 TGCACAACTACATAGTACTTACTAAAC 57.370 33.333 0.00 0.00 41.64 2.01
1314 1318 9.080915 GCACAACTACATAGTACTTACTAAACC 57.919 37.037 0.00 0.00 41.64 3.27
1321 1325 8.820153 ACATAGTACTTACTAAACCAGTAGCT 57.180 34.615 0.00 0.00 41.64 3.32
1322 1326 8.684520 ACATAGTACTTACTAAACCAGTAGCTG 58.315 37.037 0.00 0.00 41.64 4.24
1323 1327 6.527057 AGTACTTACTAAACCAGTAGCTGG 57.473 41.667 13.12 13.12 45.03 4.85
1324 1328 6.251471 AGTACTTACTAAACCAGTAGCTGGA 58.749 40.000 20.63 0.00 43.57 3.86
1361 1365 7.861629 AGATAATGAAGTGAGGAACAATACCA 58.138 34.615 0.00 0.00 0.00 3.25
1788 1792 2.095768 CAGGTATGTGTTCCTGCAAACG 60.096 50.000 0.00 0.00 43.45 3.60
1805 1809 4.618227 GCAAACGCCTTGTATCCTCATTTT 60.618 41.667 0.40 0.00 37.36 1.82
1807 1811 3.950397 ACGCCTTGTATCCTCATTTTCA 58.050 40.909 0.00 0.00 0.00 2.69
1808 1812 3.689649 ACGCCTTGTATCCTCATTTTCAC 59.310 43.478 0.00 0.00 0.00 3.18
2468 2530 1.649321 TGGAGCAACAGAGGTCAGAT 58.351 50.000 0.00 0.00 37.74 2.90
3125 3237 3.502123 TGTGGGCAGCTAGTAACTTTT 57.498 42.857 0.00 0.00 0.00 2.27
3525 3637 6.215121 CAAATCTGCAGGTTTGTTTACATGA 58.785 36.000 34.53 4.73 31.81 3.07
3866 3978 1.468985 CAGTCTGAGGTGTCCGATCT 58.531 55.000 0.00 0.00 0.00 2.75
3881 3993 2.871022 CCGATCTGAGCCTTGATTCTTG 59.129 50.000 0.00 0.00 0.00 3.02
3939 4051 2.223433 GGTTAGCATAGCAAGCAAGCAG 60.223 50.000 3.19 0.00 36.85 4.24
4100 4212 2.966516 GGAAGGTATCATCTTCGACCCT 59.033 50.000 0.00 0.00 40.95 4.34
4101 4213 4.140994 AGGAAGGTATCATCTTCGACCCTA 60.141 45.833 0.00 0.00 40.95 3.53
4114 4226 2.202932 CCCTAACGCAGCGATGCT 60.203 61.111 24.68 8.51 40.77 3.79
4322 4434 1.069159 TCACTGACGAGAACGAGAAGC 60.069 52.381 0.00 0.00 42.66 3.86
4342 4454 0.610174 TGAGGCATCAGCTCGAGTTT 59.390 50.000 15.13 0.00 41.70 2.66
4417 4529 1.362355 CCTGTTTGGTTTCGTGCCC 59.638 57.895 0.00 0.00 0.00 5.36
4510 4622 1.928503 CCGCAAATATTTTGCTGCCAG 59.071 47.619 19.31 6.61 42.87 4.85
4619 4731 4.151121 TGGCAGATTCTTGTGGAAATCAA 58.849 39.130 0.00 0.00 37.49 2.57
4631 4743 6.662865 TGTGGAAATCAATTTTGGCTCTAA 57.337 33.333 0.00 0.00 0.00 2.10
4698 4810 8.522830 TGTCAAAGAAAAAGAGAAGATGTGTTT 58.477 29.630 0.00 0.00 0.00 2.83
4781 4904 6.589907 CCTATGCAAAAAGACCAAATGTTACC 59.410 38.462 0.00 0.00 0.00 2.85
4860 4983 4.989797 TGGCATGAAAATTGTTAAGCACAG 59.010 37.500 0.00 0.00 36.48 3.66
4957 5080 7.435488 ACTGTTCATTACGTGTATATGCTTCTC 59.565 37.037 0.00 0.00 0.00 2.87
5009 5132 7.011828 TGTTGTGCTACTGTTTTTAGACTTC 57.988 36.000 0.00 0.00 0.00 3.01
5041 5164 8.303780 AGACAGATCTATTTCTCTCAACATGA 57.696 34.615 0.00 0.00 31.46 3.07
5092 5215 6.158169 CCCCCACTAACTAACCTATTTCTCTT 59.842 42.308 0.00 0.00 0.00 2.85
5110 5233 5.853936 TCTCTTAATATGTAAGCACGCCAT 58.146 37.500 0.00 0.00 0.00 4.40
5113 5236 6.288294 TCTTAATATGTAAGCACGCCATCTT 58.712 36.000 0.00 0.00 0.00 2.40
5114 5237 7.438564 TCTTAATATGTAAGCACGCCATCTTA 58.561 34.615 0.00 0.00 0.00 2.10
5143 5266 8.695663 TTTTATATCTAAATAGCTAGCCCCCT 57.304 34.615 12.13 0.00 0.00 4.79
5165 5288 7.396055 CCCCTTTAACCAATTTCTCTCAACATA 59.604 37.037 0.00 0.00 0.00 2.29
5181 5304 7.047891 TCTCAACATACAAACATATCACCTCC 58.952 38.462 0.00 0.00 0.00 4.30
5277 5400 7.259882 TCCAAACATGCATGACAATTTCTATC 58.740 34.615 32.75 0.00 0.00 2.08
5340 5468 2.307496 ATGGTTGAAGCCCATCACAA 57.693 45.000 0.00 0.00 38.30 3.33
5378 5518 1.600023 TCAACAAAAATCGGCCGAGT 58.400 45.000 33.87 29.53 0.00 4.18
5425 5565 1.000506 GTGTCCGCAGTAGAAGGTTGA 59.999 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.504175 TCCCCTCGTTTTCCTTCATAGG 59.496 50.000 0.00 0.00 43.46 2.57
1 2 3.906720 TCCCCTCGTTTTCCTTCATAG 57.093 47.619 0.00 0.00 0.00 2.23
2 3 3.181469 CGATCCCCTCGTTTTCCTTCATA 60.181 47.826 0.00 0.00 42.56 2.15
3 4 2.420129 CGATCCCCTCGTTTTCCTTCAT 60.420 50.000 0.00 0.00 42.56 2.57
4 5 1.066430 CGATCCCCTCGTTTTCCTTCA 60.066 52.381 0.00 0.00 42.56 3.02
5 6 1.653151 CGATCCCCTCGTTTTCCTTC 58.347 55.000 0.00 0.00 42.56 3.46
6 7 3.855159 CGATCCCCTCGTTTTCCTT 57.145 52.632 0.00 0.00 42.56 3.36
15 16 2.563620 GGTAATCTCCTTCGATCCCCTC 59.436 54.545 0.00 0.00 0.00 4.30
16 17 2.180308 AGGTAATCTCCTTCGATCCCCT 59.820 50.000 0.00 0.00 33.52 4.79
17 18 2.610873 AGGTAATCTCCTTCGATCCCC 58.389 52.381 0.00 0.00 33.52 4.81
18 19 5.279556 CCTTAAGGTAATCTCCTTCGATCCC 60.280 48.000 13.83 0.00 45.35 3.85
19 20 5.279556 CCCTTAAGGTAATCTCCTTCGATCC 60.280 48.000 20.22 0.00 45.35 3.36
20 21 5.539193 TCCCTTAAGGTAATCTCCTTCGATC 59.461 44.000 20.22 0.00 45.35 3.69
21 22 5.464984 TCCCTTAAGGTAATCTCCTTCGAT 58.535 41.667 20.22 0.00 45.35 3.59
22 23 4.875389 TCCCTTAAGGTAATCTCCTTCGA 58.125 43.478 20.22 2.91 45.35 3.71
23 24 4.039366 CCTCCCTTAAGGTAATCTCCTTCG 59.961 50.000 20.22 0.46 45.35 3.79
24 25 4.348461 CCCTCCCTTAAGGTAATCTCCTTC 59.652 50.000 20.22 0.00 45.35 3.46
26 27 3.540687 TCCCTCCCTTAAGGTAATCTCCT 59.459 47.826 20.22 0.00 39.84 3.69
27 28 3.937751 TCCCTCCCTTAAGGTAATCTCC 58.062 50.000 20.22 0.00 36.75 3.71
28 29 5.221945 CCAATCCCTCCCTTAAGGTAATCTC 60.222 48.000 20.22 0.00 36.75 2.75
29 30 4.665483 CCAATCCCTCCCTTAAGGTAATCT 59.335 45.833 20.22 0.00 36.75 2.40
30 31 4.750096 GCCAATCCCTCCCTTAAGGTAATC 60.750 50.000 20.22 0.00 36.75 1.75
31 32 3.140332 GCCAATCCCTCCCTTAAGGTAAT 59.860 47.826 20.22 3.54 36.75 1.89
32 33 2.512476 GCCAATCCCTCCCTTAAGGTAA 59.488 50.000 20.22 7.17 36.75 2.85
33 34 2.132686 GCCAATCCCTCCCTTAAGGTA 58.867 52.381 20.22 3.36 36.75 3.08
34 35 0.927029 GCCAATCCCTCCCTTAAGGT 59.073 55.000 20.22 0.00 36.75 3.50
35 36 1.226311 AGCCAATCCCTCCCTTAAGG 58.774 55.000 15.14 15.14 36.08 2.69
36 37 2.746472 CGAAGCCAATCCCTCCCTTAAG 60.746 54.545 0.00 0.00 0.00 1.85
37 38 1.211949 CGAAGCCAATCCCTCCCTTAA 59.788 52.381 0.00 0.00 0.00 1.85
38 39 0.837272 CGAAGCCAATCCCTCCCTTA 59.163 55.000 0.00 0.00 0.00 2.69
39 40 0.914417 TCGAAGCCAATCCCTCCCTT 60.914 55.000 0.00 0.00 0.00 3.95
40 41 0.914417 TTCGAAGCCAATCCCTCCCT 60.914 55.000 0.00 0.00 0.00 4.20
41 42 0.034477 TTTCGAAGCCAATCCCTCCC 60.034 55.000 0.00 0.00 0.00 4.30
42 43 1.950216 GATTTCGAAGCCAATCCCTCC 59.050 52.381 0.00 0.00 0.00 4.30
43 44 1.950216 GGATTTCGAAGCCAATCCCTC 59.050 52.381 13.48 0.00 39.62 4.30
44 45 1.284785 TGGATTTCGAAGCCAATCCCT 59.715 47.619 19.26 0.00 45.40 4.20
45 46 1.762708 TGGATTTCGAAGCCAATCCC 58.237 50.000 19.26 6.61 45.40 3.85
50 51 0.672401 GACCGTGGATTTCGAAGCCA 60.672 55.000 15.40 15.40 46.37 4.75
51 52 0.672401 TGACCGTGGATTTCGAAGCC 60.672 55.000 11.10 11.10 37.50 4.35
52 53 1.153353 TTGACCGTGGATTTCGAAGC 58.847 50.000 0.00 0.00 0.00 3.86
53 54 4.630069 AGTATTTGACCGTGGATTTCGAAG 59.370 41.667 0.00 0.00 0.00 3.79
54 55 4.571919 AGTATTTGACCGTGGATTTCGAA 58.428 39.130 0.00 0.00 0.00 3.71
55 56 4.178540 GAGTATTTGACCGTGGATTTCGA 58.821 43.478 0.00 0.00 0.00 3.71
56 57 3.308866 GGAGTATTTGACCGTGGATTTCG 59.691 47.826 0.00 0.00 0.00 3.46
57 58 3.308866 CGGAGTATTTGACCGTGGATTTC 59.691 47.826 0.00 0.00 41.47 2.17
58 59 3.267483 CGGAGTATTTGACCGTGGATTT 58.733 45.455 0.00 0.00 41.47 2.17
59 60 2.419574 CCGGAGTATTTGACCGTGGATT 60.420 50.000 0.00 0.00 44.34 3.01
60 61 1.138266 CCGGAGTATTTGACCGTGGAT 59.862 52.381 0.00 0.00 44.34 3.41
61 62 0.533491 CCGGAGTATTTGACCGTGGA 59.467 55.000 0.00 0.00 44.34 4.02
62 63 0.533491 TCCGGAGTATTTGACCGTGG 59.467 55.000 0.00 0.00 44.34 4.94
63 64 2.596904 ATCCGGAGTATTTGACCGTG 57.403 50.000 11.34 0.00 44.34 4.94
64 65 3.267483 CAAATCCGGAGTATTTGACCGT 58.733 45.455 19.80 0.00 44.90 4.83
65 66 2.612212 CCAAATCCGGAGTATTTGACCG 59.388 50.000 24.21 9.12 44.90 4.79
66 67 3.881220 TCCAAATCCGGAGTATTTGACC 58.119 45.455 24.21 0.00 44.90 4.02
67 68 5.183228 TCTTCCAAATCCGGAGTATTTGAC 58.817 41.667 24.21 0.00 44.90 3.18
68 69 5.429681 TCTTCCAAATCCGGAGTATTTGA 57.570 39.130 24.21 12.11 44.90 2.69
69 70 6.699575 AATCTTCCAAATCCGGAGTATTTG 57.300 37.500 18.22 18.22 42.35 2.32
70 71 6.889722 TCAAATCTTCCAAATCCGGAGTATTT 59.110 34.615 11.34 6.27 36.12 1.40
71 72 6.423182 TCAAATCTTCCAAATCCGGAGTATT 58.577 36.000 11.34 1.75 36.12 1.89
72 73 6.001449 TCAAATCTTCCAAATCCGGAGTAT 57.999 37.500 11.34 0.00 36.12 2.12
73 74 5.429681 TCAAATCTTCCAAATCCGGAGTA 57.570 39.130 11.34 0.00 36.12 2.59
74 75 4.301072 TCAAATCTTCCAAATCCGGAGT 57.699 40.909 11.34 3.58 36.12 3.85
75 76 6.016777 CCTTATCAAATCTTCCAAATCCGGAG 60.017 42.308 11.34 0.00 36.12 4.63
76 77 5.827797 CCTTATCAAATCTTCCAAATCCGGA 59.172 40.000 6.61 6.61 0.00 5.14
77 78 5.827797 TCCTTATCAAATCTTCCAAATCCGG 59.172 40.000 0.00 0.00 0.00 5.14
78 79 6.942532 TCCTTATCAAATCTTCCAAATCCG 57.057 37.500 0.00 0.00 0.00 4.18
79 80 9.538508 CAAATCCTTATCAAATCTTCCAAATCC 57.461 33.333 0.00 0.00 0.00 3.01
82 83 9.532494 TCTCAAATCCTTATCAAATCTTCCAAA 57.468 29.630 0.00 0.00 0.00 3.28
83 84 9.182214 CTCTCAAATCCTTATCAAATCTTCCAA 57.818 33.333 0.00 0.00 0.00 3.53
84 85 7.776969 CCTCTCAAATCCTTATCAAATCTTCCA 59.223 37.037 0.00 0.00 0.00 3.53
85 86 7.230309 CCCTCTCAAATCCTTATCAAATCTTCC 59.770 40.741 0.00 0.00 0.00 3.46
86 87 7.230309 CCCCTCTCAAATCCTTATCAAATCTTC 59.770 40.741 0.00 0.00 0.00 2.87
87 88 7.065504 CCCCTCTCAAATCCTTATCAAATCTT 58.934 38.462 0.00 0.00 0.00 2.40
88 89 6.411320 CCCCCTCTCAAATCCTTATCAAATCT 60.411 42.308 0.00 0.00 0.00 2.40
89 90 5.772169 CCCCCTCTCAAATCCTTATCAAATC 59.228 44.000 0.00 0.00 0.00 2.17
90 91 5.709594 CCCCCTCTCAAATCCTTATCAAAT 58.290 41.667 0.00 0.00 0.00 2.32
91 92 5.129368 CCCCCTCTCAAATCCTTATCAAA 57.871 43.478 0.00 0.00 0.00 2.69
92 93 4.796110 CCCCCTCTCAAATCCTTATCAA 57.204 45.455 0.00 0.00 0.00 2.57
112 113 1.074850 CTCTCTTCCCCTCTCCCCC 60.075 68.421 0.00 0.00 0.00 5.40
113 114 1.074850 CCTCTCTTCCCCTCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
114 115 0.105709 CTCCTCTCTTCCCCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
115 116 0.105709 CCTCCTCTCTTCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
116 117 0.105709 CCCTCCTCTCTTCCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
117 118 1.598856 CCCCTCCTCTCTTCCCCTCT 61.599 65.000 0.00 0.00 0.00 3.69
118 119 1.074850 CCCCTCCTCTCTTCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
119 120 3.124088 CCCCTCCTCTCTTCCCCT 58.876 66.667 0.00 0.00 0.00 4.79
120 121 2.770475 GCCCCTCCTCTCTTCCCC 60.770 72.222 0.00 0.00 0.00 4.81
121 122 3.157949 CGCCCCTCCTCTCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
122 123 3.855853 GCGCCCCTCCTCTCTTCC 61.856 72.222 0.00 0.00 0.00 3.46
123 124 2.585791 CTTGCGCCCCTCCTCTCTTC 62.586 65.000 4.18 0.00 0.00 2.87
124 125 2.607750 TTGCGCCCCTCCTCTCTT 60.608 61.111 4.18 0.00 0.00 2.85
125 126 3.080121 CTTGCGCCCCTCCTCTCT 61.080 66.667 4.18 0.00 0.00 3.10
126 127 4.168291 CCTTGCGCCCCTCCTCTC 62.168 72.222 4.18 0.00 0.00 3.20
130 131 4.109675 TTAGCCTTGCGCCCCTCC 62.110 66.667 4.18 0.00 38.78 4.30
131 132 2.514824 CTTAGCCTTGCGCCCCTC 60.515 66.667 4.18 0.00 38.78 4.30
132 133 4.115199 CCTTAGCCTTGCGCCCCT 62.115 66.667 4.18 0.00 38.78 4.79
134 135 3.938637 AACCCTTAGCCTTGCGCCC 62.939 63.158 4.18 0.00 38.78 6.13
135 136 1.977009 AAACCCTTAGCCTTGCGCC 60.977 57.895 4.18 0.00 38.78 6.53
136 137 1.212751 CAAACCCTTAGCCTTGCGC 59.787 57.895 0.00 0.00 37.98 6.09
137 138 1.595093 CCCAAACCCTTAGCCTTGCG 61.595 60.000 0.00 0.00 0.00 4.85
138 139 0.541998 ACCCAAACCCTTAGCCTTGC 60.542 55.000 0.00 0.00 0.00 4.01
139 140 1.256812 CACCCAAACCCTTAGCCTTG 58.743 55.000 0.00 0.00 0.00 3.61
140 141 0.114364 CCACCCAAACCCTTAGCCTT 59.886 55.000 0.00 0.00 0.00 4.35
141 142 1.774300 CCACCCAAACCCTTAGCCT 59.226 57.895 0.00 0.00 0.00 4.58
142 143 1.304962 CCCACCCAAACCCTTAGCC 60.305 63.158 0.00 0.00 0.00 3.93
143 144 1.304962 CCCCACCCAAACCCTTAGC 60.305 63.158 0.00 0.00 0.00 3.09
144 145 0.251608 CACCCCACCCAAACCCTTAG 60.252 60.000 0.00 0.00 0.00 2.18
145 146 1.731324 CCACCCCACCCAAACCCTTA 61.731 60.000 0.00 0.00 0.00 2.69
146 147 2.612251 CACCCCACCCAAACCCTT 59.388 61.111 0.00 0.00 0.00 3.95
147 148 3.517497 CCACCCCACCCAAACCCT 61.517 66.667 0.00 0.00 0.00 4.34
148 149 4.631740 CCCACCCCACCCAAACCC 62.632 72.222 0.00 0.00 0.00 4.11
149 150 4.631740 CCCCACCCCACCCAAACC 62.632 72.222 0.00 0.00 0.00 3.27
150 151 4.631740 CCCCCACCCCACCCAAAC 62.632 72.222 0.00 0.00 0.00 2.93
156 157 4.596585 CACACACCCCCACCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
161 162 4.596585 CACCCCACACACCCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
167 168 4.596585 CACCCCCACCCCACACAC 62.597 72.222 0.00 0.00 0.00 3.82
179 180 4.348495 TCACTCCCCTCCCACCCC 62.348 72.222 0.00 0.00 0.00 4.95
180 181 2.689034 CTCACTCCCCTCCCACCC 60.689 72.222 0.00 0.00 0.00 4.61
181 182 2.689034 CCTCACTCCCCTCCCACC 60.689 72.222 0.00 0.00 0.00 4.61
182 183 2.689034 CCCTCACTCCCCTCCCAC 60.689 72.222 0.00 0.00 0.00 4.61
183 184 3.208592 ACCCTCACTCCCCTCCCA 61.209 66.667 0.00 0.00 0.00 4.37
184 185 2.689034 CACCCTCACTCCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
185 186 2.689034 CCACCCTCACTCCCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
186 187 2.689034 CCCACCCTCACTCCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
187 188 4.354943 CCCCACCCTCACTCCCCT 62.355 72.222 0.00 0.00 0.00 4.79
191 192 3.721706 CTGGCCCCACCCTCACTC 61.722 72.222 0.00 0.00 37.83 3.51
196 197 4.693915 TTAGGCTGGCCCCACCCT 62.694 66.667 8.11 6.43 37.83 4.34
197 198 4.129148 CTTAGGCTGGCCCCACCC 62.129 72.222 8.11 0.00 37.83 4.61
198 199 3.339093 ACTTAGGCTGGCCCCACC 61.339 66.667 8.11 0.00 36.58 4.61
199 200 2.044946 CACTTAGGCTGGCCCCAC 60.045 66.667 8.11 0.00 36.58 4.61
200 201 3.338250 CCACTTAGGCTGGCCCCA 61.338 66.667 8.11 0.00 36.58 4.96
209 210 1.070758 ACTGTCTGTGTGCCACTTAGG 59.929 52.381 0.00 0.00 41.84 2.69
210 211 2.138320 CACTGTCTGTGTGCCACTTAG 58.862 52.381 0.00 0.00 41.53 2.18
211 212 2.238942 CACTGTCTGTGTGCCACTTA 57.761 50.000 0.00 0.00 41.53 2.24
212 213 3.085208 CACTGTCTGTGTGCCACTT 57.915 52.632 0.00 0.00 41.53 3.16
213 214 4.863707 CACTGTCTGTGTGCCACT 57.136 55.556 0.00 0.00 41.53 4.00
221 222 0.105964 TTAGGCGTTGCACTGTCTGT 59.894 50.000 1.85 0.00 0.00 3.41
222 223 0.792640 CTTAGGCGTTGCACTGTCTG 59.207 55.000 1.85 0.00 0.00 3.51
223 224 0.679505 TCTTAGGCGTTGCACTGTCT 59.320 50.000 0.00 0.00 0.00 3.41
224 225 0.790814 GTCTTAGGCGTTGCACTGTC 59.209 55.000 0.00 0.00 0.00 3.51
225 226 0.105964 TGTCTTAGGCGTTGCACTGT 59.894 50.000 0.00 0.00 0.00 3.55
226 227 0.512952 GTGTCTTAGGCGTTGCACTG 59.487 55.000 0.00 0.00 0.00 3.66
227 228 0.105964 TGTGTCTTAGGCGTTGCACT 59.894 50.000 0.00 0.00 0.00 4.40
228 229 0.512952 CTGTGTCTTAGGCGTTGCAC 59.487 55.000 0.00 0.00 0.00 4.57
229 230 0.602638 CCTGTGTCTTAGGCGTTGCA 60.603 55.000 0.00 0.00 0.00 4.08
230 231 2.162716 CCTGTGTCTTAGGCGTTGC 58.837 57.895 0.00 0.00 0.00 4.17
236 237 2.103042 GCAGCGCCTGTGTCTTAGG 61.103 63.158 2.29 0.00 38.39 2.69
237 238 1.374631 TGCAGCGCCTGTGTCTTAG 60.375 57.895 2.29 0.00 33.43 2.18
238 239 1.667830 GTGCAGCGCCTGTGTCTTA 60.668 57.895 2.29 0.00 33.43 2.10
239 240 2.974698 GTGCAGCGCCTGTGTCTT 60.975 61.111 2.29 0.00 33.43 3.01
240 241 3.541950 ATGTGCAGCGCCTGTGTCT 62.542 57.895 2.29 0.00 33.43 3.41
241 242 1.298157 TAATGTGCAGCGCCTGTGTC 61.298 55.000 2.29 0.00 33.43 3.67
242 243 1.302431 TAATGTGCAGCGCCTGTGT 60.302 52.632 2.29 0.00 33.43 3.72
243 244 1.135315 GTAATGTGCAGCGCCTGTG 59.865 57.895 2.29 0.00 33.43 3.66
244 245 0.888736 TTGTAATGTGCAGCGCCTGT 60.889 50.000 2.29 0.00 33.43 4.00
245 246 0.179181 CTTGTAATGTGCAGCGCCTG 60.179 55.000 2.29 2.69 34.12 4.85
246 247 0.606401 ACTTGTAATGTGCAGCGCCT 60.606 50.000 2.29 0.00 0.00 5.52
247 248 0.454957 CACTTGTAATGTGCAGCGCC 60.455 55.000 2.29 0.00 35.12 6.53
248 249 0.238289 ACACTTGTAATGTGCAGCGC 59.762 50.000 0.00 0.00 45.01 5.92
249 250 1.400113 CCACACTTGTAATGTGCAGCG 60.400 52.381 0.00 0.00 45.01 5.18
250 251 1.666888 GCCACACTTGTAATGTGCAGC 60.667 52.381 0.00 0.00 45.01 5.25
251 252 1.400113 CGCCACACTTGTAATGTGCAG 60.400 52.381 0.00 0.00 45.01 4.41
252 253 0.590682 CGCCACACTTGTAATGTGCA 59.409 50.000 0.00 0.00 45.01 4.57
253 254 0.729140 GCGCCACACTTGTAATGTGC 60.729 55.000 0.00 0.00 45.01 4.57
254 255 0.109781 GGCGCCACACTTGTAATGTG 60.110 55.000 24.80 0.00 46.39 3.21
255 256 1.241315 GGGCGCCACACTTGTAATGT 61.241 55.000 30.85 0.00 0.00 2.71
256 257 0.960364 AGGGCGCCACACTTGTAATG 60.960 55.000 30.85 0.00 0.00 1.90
257 258 0.616371 TAGGGCGCCACACTTGTAAT 59.384 50.000 30.85 1.63 0.00 1.89
258 259 0.036765 CTAGGGCGCCACACTTGTAA 60.037 55.000 30.85 0.00 0.00 2.41
259 260 1.594833 CTAGGGCGCCACACTTGTA 59.405 57.895 30.85 6.34 0.00 2.41
260 261 2.347490 CTAGGGCGCCACACTTGT 59.653 61.111 30.85 5.42 0.00 3.16
261 262 3.127533 GCTAGGGCGCCACACTTG 61.128 66.667 30.85 17.73 0.00 3.16
277 278 3.503363 CTGTGCAGCGCCTAAGGC 61.503 66.667 2.29 0.56 46.75 4.35
278 279 3.503363 GCTGTGCAGCGCCTAAGG 61.503 66.667 2.29 0.00 45.29 2.69
290 291 3.730761 GCCCTTCACGCAGCTGTG 61.731 66.667 25.37 25.37 41.28 3.66
298 299 3.726517 CAGTTGCGGCCCTTCACG 61.727 66.667 0.00 0.00 0.00 4.35
299 300 3.365265 CCAGTTGCGGCCCTTCAC 61.365 66.667 0.00 0.00 0.00 3.18
300 301 3.565214 TCCAGTTGCGGCCCTTCA 61.565 61.111 0.00 0.00 0.00 3.02
301 302 3.056328 GTCCAGTTGCGGCCCTTC 61.056 66.667 0.00 0.00 0.00 3.46
302 303 4.660938 GGTCCAGTTGCGGCCCTT 62.661 66.667 0.00 0.00 0.00 3.95
306 307 4.329545 TCCTGGTCCAGTTGCGGC 62.330 66.667 17.85 0.00 0.00 6.53
307 308 2.358737 GTCCTGGTCCAGTTGCGG 60.359 66.667 17.85 2.86 0.00 5.69
308 309 1.669115 CAGTCCTGGTCCAGTTGCG 60.669 63.158 17.85 2.37 0.00 4.85
309 310 1.968540 GCAGTCCTGGTCCAGTTGC 60.969 63.158 17.85 18.37 0.00 4.17
310 311 1.302832 GGCAGTCCTGGTCCAGTTG 60.303 63.158 17.85 13.18 0.00 3.16
311 312 1.770110 TGGCAGTCCTGGTCCAGTT 60.770 57.895 17.85 0.16 0.00 3.16
312 313 2.122413 TGGCAGTCCTGGTCCAGT 60.122 61.111 17.85 0.00 0.00 4.00
313 314 2.348998 GTGGCAGTCCTGGTCCAG 59.651 66.667 12.40 12.40 0.00 3.86
314 315 3.625897 CGTGGCAGTCCTGGTCCA 61.626 66.667 0.00 0.00 0.00 4.02
316 317 4.008933 AGCGTGGCAGTCCTGGTC 62.009 66.667 0.00 0.00 0.00 4.02
317 318 4.320456 CAGCGTGGCAGTCCTGGT 62.320 66.667 0.00 0.00 0.00 4.00
336 337 2.890847 CTTAGGCGTCGCACCTCCTG 62.891 65.000 20.50 0.00 38.81 3.86
337 338 2.678934 TTAGGCGTCGCACCTCCT 60.679 61.111 20.50 8.84 38.81 3.69
338 339 2.202756 CTTAGGCGTCGCACCTCC 60.203 66.667 20.50 0.35 38.81 4.30
339 340 2.202756 CCTTAGGCGTCGCACCTC 60.203 66.667 20.50 0.77 38.81 3.85
340 341 3.771160 CCCTTAGGCGTCGCACCT 61.771 66.667 20.50 10.37 41.57 4.00
341 342 3.305177 TTCCCTTAGGCGTCGCACC 62.305 63.158 20.50 2.01 0.00 5.01
342 343 1.810030 CTTCCCTTAGGCGTCGCAC 60.810 63.158 20.50 8.57 0.00 5.34
343 344 2.577059 CTTCCCTTAGGCGTCGCA 59.423 61.111 20.50 0.00 0.00 5.10
344 345 2.202892 CCTTCCCTTAGGCGTCGC 60.203 66.667 9.22 9.22 0.00 5.19
345 346 2.356780 ACCCTTCCCTTAGGCGTCG 61.357 63.158 0.00 0.00 33.73 5.12
346 347 1.221021 CACCCTTCCCTTAGGCGTC 59.779 63.158 0.00 0.00 33.73 5.19
347 348 2.967946 GCACCCTTCCCTTAGGCGT 61.968 63.158 0.00 0.00 33.73 5.68
348 349 2.124695 GCACCCTTCCCTTAGGCG 60.125 66.667 0.00 0.00 33.73 5.52
349 350 1.077429 CAGCACCCTTCCCTTAGGC 60.077 63.158 0.00 0.00 33.73 3.93
350 351 1.077429 GCAGCACCCTTCCCTTAGG 60.077 63.158 0.00 0.00 34.92 2.69
351 352 0.678048 GTGCAGCACCCTTCCCTTAG 60.678 60.000 15.27 0.00 0.00 2.18
352 353 1.378762 GTGCAGCACCCTTCCCTTA 59.621 57.895 15.27 0.00 0.00 2.69
353 354 2.116125 GTGCAGCACCCTTCCCTT 59.884 61.111 15.27 0.00 0.00 3.95
354 355 3.177884 TGTGCAGCACCCTTCCCT 61.178 61.111 23.06 0.00 32.73 4.20
355 356 2.985847 GTGTGCAGCACCCTTCCC 60.986 66.667 23.06 0.00 42.10 3.97
372 373 4.286320 CTAGGCGCCGCACCCTAG 62.286 72.222 23.20 12.42 43.29 3.02
376 377 4.301027 ATAGCTAGGCGCCGCACC 62.301 66.667 25.28 13.98 40.39 5.01
377 378 2.735100 GATAGCTAGGCGCCGCAC 60.735 66.667 25.28 16.83 40.39 5.34
378 379 4.342987 CGATAGCTAGGCGCCGCA 62.343 66.667 25.28 15.38 40.39 5.69
380 381 4.421479 CCCGATAGCTAGGCGCCG 62.421 72.222 23.20 9.22 40.39 6.46
381 382 4.743975 GCCCGATAGCTAGGCGCC 62.744 72.222 21.89 21.89 40.39 6.53
384 385 4.743975 GGCGCCCGATAGCTAGGC 62.744 72.222 18.11 11.57 43.53 3.93
385 386 3.303135 TGGCGCCCGATAGCTAGG 61.303 66.667 26.77 0.00 0.00 3.02
386 387 2.049063 GTGGCGCCCGATAGCTAG 60.049 66.667 26.77 0.00 0.00 3.42
387 388 2.520982 AGTGGCGCCCGATAGCTA 60.521 61.111 26.77 0.00 0.00 3.32
388 389 3.917760 GAGTGGCGCCCGATAGCT 61.918 66.667 26.77 12.05 0.00 3.32
390 391 2.622903 TTTCGAGTGGCGCCCGATAG 62.623 60.000 26.77 11.88 40.61 2.08
391 392 2.622903 CTTTCGAGTGGCGCCCGATA 62.623 60.000 26.77 18.88 40.61 2.92
392 393 4.077184 TTTCGAGTGGCGCCCGAT 62.077 61.111 26.77 9.83 40.61 4.18
393 394 4.735132 CTTTCGAGTGGCGCCCGA 62.735 66.667 26.77 23.03 40.61 5.14
396 397 2.791501 TAACCCTTTCGAGTGGCGCC 62.792 60.000 22.73 22.73 40.61 6.53
397 398 1.359459 CTAACCCTTTCGAGTGGCGC 61.359 60.000 0.00 0.00 40.61 6.53
398 399 1.359459 GCTAACCCTTTCGAGTGGCG 61.359 60.000 0.79 0.00 42.69 5.69
399 400 0.321298 TGCTAACCCTTTCGAGTGGC 60.321 55.000 0.79 0.00 0.00 5.01
400 401 2.178912 TTGCTAACCCTTTCGAGTGG 57.821 50.000 0.00 0.00 0.00 4.00
401 402 3.058914 CACTTTGCTAACCCTTTCGAGTG 60.059 47.826 0.00 0.00 0.00 3.51
402 403 3.139077 CACTTTGCTAACCCTTTCGAGT 58.861 45.455 0.00 0.00 0.00 4.18
403 404 3.399330 TCACTTTGCTAACCCTTTCGAG 58.601 45.455 0.00 0.00 0.00 4.04
404 405 3.478857 TCACTTTGCTAACCCTTTCGA 57.521 42.857 0.00 0.00 0.00 3.71
405 406 4.561735 TTTCACTTTGCTAACCCTTTCG 57.438 40.909 0.00 0.00 0.00 3.46
406 407 7.786178 AAAATTTCACTTTGCTAACCCTTTC 57.214 32.000 0.00 0.00 0.00 2.62
428 429 4.142271 ACAAAATGACCTGCTCACGAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
429 430 3.380004 ACAAAATGACCTGCTCACGAAAA 59.620 39.130 0.00 0.00 0.00 2.29
430 431 2.948979 ACAAAATGACCTGCTCACGAAA 59.051 40.909 0.00 0.00 0.00 3.46
431 432 2.290367 CACAAAATGACCTGCTCACGAA 59.710 45.455 0.00 0.00 0.00 3.85
432 433 1.872952 CACAAAATGACCTGCTCACGA 59.127 47.619 0.00 0.00 0.00 4.35
433 434 1.872952 TCACAAAATGACCTGCTCACG 59.127 47.619 0.00 0.00 29.99 4.35
434 435 4.510038 AATCACAAAATGACCTGCTCAC 57.490 40.909 0.00 0.00 41.24 3.51
435 436 4.583907 TCAAATCACAAAATGACCTGCTCA 59.416 37.500 0.00 0.00 41.24 4.26
436 437 5.125100 TCAAATCACAAAATGACCTGCTC 57.875 39.130 0.00 0.00 41.24 4.26
437 438 5.733620 ATCAAATCACAAAATGACCTGCT 57.266 34.783 0.00 0.00 41.24 4.24
438 439 6.347888 CCAAATCAAATCACAAAATGACCTGC 60.348 38.462 0.00 0.00 41.24 4.85
439 440 6.148150 CCCAAATCAAATCACAAAATGACCTG 59.852 38.462 0.00 0.00 41.24 4.00
440 441 6.232692 CCCAAATCAAATCACAAAATGACCT 58.767 36.000 0.00 0.00 41.24 3.85
441 442 5.412286 CCCCAAATCAAATCACAAAATGACC 59.588 40.000 0.00 0.00 41.24 4.02
442 443 5.997129 ACCCCAAATCAAATCACAAAATGAC 59.003 36.000 0.00 0.00 41.24 3.06
443 444 6.183361 TGACCCCAAATCAAATCACAAAATGA 60.183 34.615 0.00 0.00 43.13 2.57
444 445 5.996513 TGACCCCAAATCAAATCACAAAATG 59.003 36.000 0.00 0.00 0.00 2.32
445 446 6.185114 TGACCCCAAATCAAATCACAAAAT 57.815 33.333 0.00 0.00 0.00 1.82
446 447 5.620738 TGACCCCAAATCAAATCACAAAA 57.379 34.783 0.00 0.00 0.00 2.44
447 448 5.620738 TTGACCCCAAATCAAATCACAAA 57.379 34.783 0.00 0.00 33.16 2.83
448 449 5.620738 TTTGACCCCAAATCAAATCACAA 57.379 34.783 0.00 0.00 40.32 3.33
454 455 6.924913 TCACATATTTGACCCCAAATCAAA 57.075 33.333 6.66 2.89 46.83 2.69
455 456 7.493499 AATCACATATTTGACCCCAAATCAA 57.507 32.000 6.66 0.00 46.83 2.57
456 457 7.399765 AGAAATCACATATTTGACCCCAAATCA 59.600 33.333 6.66 0.00 46.83 2.57
457 458 7.707893 CAGAAATCACATATTTGACCCCAAATC 59.292 37.037 6.66 0.00 46.83 2.17
459 460 6.574073 GCAGAAATCACATATTTGACCCCAAA 60.574 38.462 0.00 0.00 45.28 3.28
460 461 5.105392 GCAGAAATCACATATTTGACCCCAA 60.105 40.000 0.00 0.00 0.00 4.12
461 462 4.402155 GCAGAAATCACATATTTGACCCCA 59.598 41.667 0.00 0.00 0.00 4.96
462 463 4.202151 GGCAGAAATCACATATTTGACCCC 60.202 45.833 0.00 0.00 0.00 4.95
463 464 4.498009 CGGCAGAAATCACATATTTGACCC 60.498 45.833 0.00 0.00 0.00 4.46
464 465 4.335315 TCGGCAGAAATCACATATTTGACC 59.665 41.667 0.00 0.00 0.00 4.02
465 466 5.484173 TCGGCAGAAATCACATATTTGAC 57.516 39.130 0.00 0.00 0.00 3.18
466 467 6.698008 AATCGGCAGAAATCACATATTTGA 57.302 33.333 0.00 0.00 0.00 2.69
467 468 7.760131 AAAATCGGCAGAAATCACATATTTG 57.240 32.000 0.00 0.00 0.00 2.32
468 469 8.686334 ACTAAAATCGGCAGAAATCACATATTT 58.314 29.630 0.00 0.00 0.00 1.40
469 470 8.225603 ACTAAAATCGGCAGAAATCACATATT 57.774 30.769 0.00 0.00 0.00 1.28
470 471 7.716998 AGACTAAAATCGGCAGAAATCACATAT 59.283 33.333 0.00 0.00 0.00 1.78
471 472 7.047891 AGACTAAAATCGGCAGAAATCACATA 58.952 34.615 0.00 0.00 0.00 2.29
472 473 5.882557 AGACTAAAATCGGCAGAAATCACAT 59.117 36.000 0.00 0.00 0.00 3.21
473 474 5.245531 AGACTAAAATCGGCAGAAATCACA 58.754 37.500 0.00 0.00 0.00 3.58
474 475 5.803020 AGACTAAAATCGGCAGAAATCAC 57.197 39.130 0.00 0.00 0.00 3.06
475 476 6.817765 AAAGACTAAAATCGGCAGAAATCA 57.182 33.333 0.00 0.00 0.00 2.57
476 477 7.692705 GTGTAAAGACTAAAATCGGCAGAAATC 59.307 37.037 0.00 0.00 0.00 2.17
477 478 7.390718 AGTGTAAAGACTAAAATCGGCAGAAAT 59.609 33.333 0.00 0.00 0.00 2.17
478 479 6.708949 AGTGTAAAGACTAAAATCGGCAGAAA 59.291 34.615 0.00 0.00 0.00 2.52
479 480 6.147164 CAGTGTAAAGACTAAAATCGGCAGAA 59.853 38.462 0.00 0.00 0.00 3.02
480 481 5.637810 CAGTGTAAAGACTAAAATCGGCAGA 59.362 40.000 0.00 0.00 0.00 4.26
481 482 5.163854 CCAGTGTAAAGACTAAAATCGGCAG 60.164 44.000 0.00 0.00 0.00 4.85
482 483 4.693566 CCAGTGTAAAGACTAAAATCGGCA 59.306 41.667 0.00 0.00 0.00 5.69
483 484 4.094442 CCCAGTGTAAAGACTAAAATCGGC 59.906 45.833 0.00 0.00 0.00 5.54
484 485 5.243207 ACCCAGTGTAAAGACTAAAATCGG 58.757 41.667 0.00 0.00 0.00 4.18
485 486 6.869913 TGTACCCAGTGTAAAGACTAAAATCG 59.130 38.462 0.00 0.00 0.00 3.34
486 487 7.148457 GCTGTACCCAGTGTAAAGACTAAAATC 60.148 40.741 0.00 0.00 36.98 2.17
487 488 6.653740 GCTGTACCCAGTGTAAAGACTAAAAT 59.346 38.462 0.00 0.00 36.98 1.82
488 489 5.993441 GCTGTACCCAGTGTAAAGACTAAAA 59.007 40.000 0.00 0.00 36.98 1.52
489 490 5.070714 TGCTGTACCCAGTGTAAAGACTAAA 59.929 40.000 0.00 0.00 36.98 1.85
490 491 4.589798 TGCTGTACCCAGTGTAAAGACTAA 59.410 41.667 0.00 0.00 36.98 2.24
491 492 4.154176 TGCTGTACCCAGTGTAAAGACTA 58.846 43.478 0.00 0.00 36.98 2.59
492 493 2.969950 TGCTGTACCCAGTGTAAAGACT 59.030 45.455 0.00 0.00 36.98 3.24
493 494 3.326747 CTGCTGTACCCAGTGTAAAGAC 58.673 50.000 0.00 0.00 36.98 3.01
494 495 2.289444 GCTGCTGTACCCAGTGTAAAGA 60.289 50.000 11.02 0.00 36.98 2.52
495 496 2.076863 GCTGCTGTACCCAGTGTAAAG 58.923 52.381 11.02 0.00 41.02 1.85
496 497 1.606994 CGCTGCTGTACCCAGTGTAAA 60.607 52.381 13.21 0.00 41.02 2.01
497 498 0.037697 CGCTGCTGTACCCAGTGTAA 60.038 55.000 13.21 0.00 41.02 2.41
498 499 1.589630 CGCTGCTGTACCCAGTGTA 59.410 57.895 13.21 0.00 41.02 2.90
499 500 2.343758 CGCTGCTGTACCCAGTGT 59.656 61.111 13.21 0.00 41.02 3.55
500 501 3.121030 GCGCTGCTGTACCCAGTG 61.121 66.667 15.82 15.82 41.02 3.66
501 502 3.625897 TGCGCTGCTGTACCCAGT 61.626 61.111 9.73 0.00 41.02 4.00
502 503 3.121030 GTGCGCTGCTGTACCCAG 61.121 66.667 9.73 6.33 41.91 4.45
506 507 3.635734 CTTGCGTGCGCTGCTGTAC 62.636 63.158 22.29 5.09 42.51 2.90
507 508 3.413861 CTTGCGTGCGCTGCTGTA 61.414 61.111 22.29 9.78 42.51 2.74
533 534 4.626081 AGGAGGTGTGCCGTGTGC 62.626 66.667 0.00 0.00 40.50 4.57
534 535 2.666190 CAGGAGGTGTGCCGTGTG 60.666 66.667 0.00 0.00 40.50 3.82
535 536 4.626081 GCAGGAGGTGTGCCGTGT 62.626 66.667 0.00 0.00 40.50 4.49
540 541 2.674380 CTTGGGCAGGAGGTGTGC 60.674 66.667 0.00 0.00 40.42 4.57
541 542 2.674380 GCTTGGGCAGGAGGTGTG 60.674 66.667 0.00 0.00 38.54 3.82
542 543 3.177884 TGCTTGGGCAGGAGGTGT 61.178 61.111 0.00 0.00 44.28 4.16
553 554 4.034258 CACCTGCAGCGTGCTTGG 62.034 66.667 18.37 13.13 45.31 3.61
600 602 4.838152 GCGGCGCAATCCAGGAGA 62.838 66.667 29.21 0.00 0.00 3.71
767 770 1.300620 TGGACACGGCAGAAACGAG 60.301 57.895 0.00 0.00 34.93 4.18
770 773 2.258726 GGGTGGACACGGCAGAAAC 61.259 63.158 0.00 0.00 0.00 2.78
772 775 3.948719 GGGGTGGACACGGCAGAA 61.949 66.667 0.00 0.00 0.00 3.02
807 810 1.439679 CTCGTACCTCAAAACCCAGC 58.560 55.000 0.00 0.00 0.00 4.85
808 811 1.002087 AGCTCGTACCTCAAAACCCAG 59.998 52.381 0.00 0.00 0.00 4.45
891 894 4.776322 TCAAGATGGTGCGCGGGG 62.776 66.667 8.83 0.00 0.00 5.73
968 971 3.129287 CAGATAGGTGTCAATTTGGGCAC 59.871 47.826 13.09 13.09 0.00 5.01
1124 1128 4.081972 CACAGAGCTAAAGGCAGAAGAGTA 60.082 45.833 0.00 0.00 44.79 2.59
1163 1167 5.518848 AGAAACTGCACATGAACATTCAA 57.481 34.783 0.00 0.00 41.13 2.69
1250 1254 7.661847 AGCAGGCTAATAATACAACATAAGACC 59.338 37.037 0.00 0.00 0.00 3.85
1252 1256 9.056005 CAAGCAGGCTAATAATACAACATAAGA 57.944 33.333 0.00 0.00 0.00 2.10
1261 1265 6.768381 GGGGATATCAAGCAGGCTAATAATAC 59.232 42.308 4.83 0.00 0.00 1.89
1264 1268 4.852118 AGGGGATATCAAGCAGGCTAATAA 59.148 41.667 4.83 0.00 0.00 1.40
1321 1325 8.328758 ACTTCATTATCTACTGGTTTCATTCCA 58.671 33.333 0.00 0.00 0.00 3.53
1322 1326 8.616076 CACTTCATTATCTACTGGTTTCATTCC 58.384 37.037 0.00 0.00 0.00 3.01
1323 1327 9.383519 TCACTTCATTATCTACTGGTTTCATTC 57.616 33.333 0.00 0.00 0.00 2.67
1324 1328 9.388506 CTCACTTCATTATCTACTGGTTTCATT 57.611 33.333 0.00 0.00 0.00 2.57
1327 1331 7.556844 TCCTCACTTCATTATCTACTGGTTTC 58.443 38.462 0.00 0.00 0.00 2.78
1343 1347 6.831976 AGGATATGGTATTGTTCCTCACTTC 58.168 40.000 0.00 0.00 31.06 3.01
1719 1723 3.421919 TCCATTGACAGCATCTGTTCA 57.578 42.857 0.66 0.00 45.44 3.18
1788 1792 3.938963 TCGTGAAAATGAGGATACAAGGC 59.061 43.478 0.00 0.00 41.41 4.35
1805 1809 6.375736 TGCATAAGTTTTCCCAAATATCGTGA 59.624 34.615 0.00 0.00 0.00 4.35
1807 1811 6.767524 TGCATAAGTTTTCCCAAATATCGT 57.232 33.333 0.00 0.00 0.00 3.73
1808 1812 8.783093 TCTATGCATAAGTTTTCCCAAATATCG 58.217 33.333 8.00 0.00 0.00 2.92
2287 2348 6.925610 TCCATACAGAAACATCAAGCATAC 57.074 37.500 0.00 0.00 0.00 2.39
2468 2530 6.299805 ACAGGAAGTACAGATGCATTTCTA 57.700 37.500 0.00 0.00 0.00 2.10
3125 3237 5.953548 GGCCCTTACCCTGTAAGATTAAAAA 59.046 40.000 14.04 0.00 34.07 1.94
3494 3606 6.029346 ACAAACCTGCAGATTTGGAAATAG 57.971 37.500 32.08 10.38 39.61 1.73
3525 3637 1.829533 CCACCCTGCAAGCAACAGT 60.830 57.895 0.00 0.00 33.09 3.55
3881 3993 2.032636 TCACGCAAATCATCATGATCGC 60.033 45.455 4.86 6.28 35.76 4.58
3955 4067 1.324740 CGTAGGGTGGGACCGAATCA 61.325 60.000 0.00 0.00 39.83 2.57
4114 4226 2.501223 GAACGCCAGGTCGATGTCCA 62.501 60.000 9.87 0.00 0.00 4.02
4510 4622 4.851558 GGATTAACGTTGCTGTGATGTTTC 59.148 41.667 11.99 0.00 0.00 2.78
4590 4702 4.225942 TCCACAAGAATCTGCCATACTCTT 59.774 41.667 0.00 0.00 0.00 2.85
4687 4799 5.240623 TGGGTGTGACAATAAACACATCTTC 59.759 40.000 0.00 0.00 46.83 2.87
4698 4810 6.183360 GCATGTATCATTTGGGTGTGACAATA 60.183 38.462 0.00 0.00 0.00 1.90
4921 5044 7.190871 ACACGTAATGAACAGTAAAACCAAAG 58.809 34.615 0.00 0.00 0.00 2.77
4957 5080 0.179189 GACGCGGATTTTTGGCTCTG 60.179 55.000 12.47 0.00 0.00 3.35
5009 5132 5.240623 AGAGAAATAGATCTGTCTACCAGCG 59.759 44.000 5.18 0.00 39.66 5.18
5092 5215 8.615878 AATTAAGATGGCGTGCTTACATATTA 57.384 30.769 0.00 0.00 29.90 0.98
5141 5264 8.792633 TGTATGTTGAGAGAAATTGGTTAAAGG 58.207 33.333 0.00 0.00 0.00 3.11
5165 5288 4.127171 GCATACGGAGGTGATATGTTTGT 58.873 43.478 0.00 0.00 0.00 2.83
5169 5292 3.133901 TGTTGCATACGGAGGTGATATGT 59.866 43.478 0.00 0.00 0.00 2.29
5181 5304 6.291743 GCATTTTTCCATACATGTTGCATACG 60.292 38.462 2.30 0.00 0.00 3.06
5340 5468 6.552008 TGTTGAAAGAAGGATATTGACCCTT 58.448 36.000 0.00 0.00 44.85 3.95
5370 5510 1.889105 CCATGGATTGACTCGGCCG 60.889 63.158 22.12 22.12 0.00 6.13
5378 5518 1.338674 GGACGTGACACCATGGATTGA 60.339 52.381 21.47 0.00 33.64 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.