Multiple sequence alignment - TraesCS7B01G216800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G216800 chr7B 100.000 3092 0 0 1 3092 399804870 399801779 0.000000e+00 5710.0
1 TraesCS7B01G216800 chr7B 96.617 1330 37 3 775 2096 394864181 394865510 0.000000e+00 2200.0
2 TraesCS7B01G216800 chr7B 96.617 1330 37 3 775 2096 394912346 394913675 0.000000e+00 2200.0
3 TraesCS7B01G216800 chr7B 95.626 1326 47 8 791 2112 399872609 399871291 0.000000e+00 2117.0
4 TraesCS7B01G216800 chr7D 94.179 1546 75 7 596 2130 396445324 396443783 0.000000e+00 2342.0
5 TraesCS7B01G216800 chr7D 93.984 1363 74 7 736 2096 395188117 395189473 0.000000e+00 2056.0
6 TraesCS7B01G216800 chr7D 92.996 1285 65 5 817 2096 395295473 395296737 0.000000e+00 1851.0
7 TraesCS7B01G216800 chr7D 90.724 1229 93 11 958 2167 395076467 395077693 0.000000e+00 1618.0
8 TraesCS7B01G216800 chr7D 90.734 259 22 2 2198 2454 396443626 396443368 8.210000e-91 344.0
9 TraesCS7B01G216800 chr7D 100.000 33 0 0 485 517 577745627 577745659 9.260000e-06 62.1
10 TraesCS7B01G216800 chr7A 92.498 1613 87 12 518 2098 450093046 450091436 0.000000e+00 2278.0
11 TraesCS7B01G216800 chr7A 93.378 1329 64 12 775 2096 448478757 448480068 0.000000e+00 1945.0
12 TraesCS7B01G216800 chr7A 92.948 1333 81 8 810 2132 448473146 448474475 0.000000e+00 1929.0
13 TraesCS7B01G216800 chr7A 86.133 375 31 11 2098 2454 450086173 450085802 4.840000e-103 385.0
14 TraesCS7B01G216800 chr7A 84.831 356 41 10 3 357 189442903 189443246 2.280000e-91 346.0
15 TraesCS7B01G216800 chr6B 94.053 639 35 1 2454 3092 586651704 586651069 0.000000e+00 966.0
16 TraesCS7B01G216800 chr6B 84.726 347 41 9 3 348 288784995 288785330 1.370000e-88 337.0
17 TraesCS7B01G216800 chr6B 94.737 133 6 1 2454 2586 586651836 586651705 4.040000e-49 206.0
18 TraesCS7B01G216800 chr6B 100.000 35 0 0 485 519 505702818 505702784 7.160000e-07 65.8
19 TraesCS7B01G216800 chr4A 93.642 519 28 3 1 516 608363095 608363611 0.000000e+00 771.0
20 TraesCS7B01G216800 chr4A 85.149 101 11 2 579 675 621538952 621539052 1.960000e-17 100.0
21 TraesCS7B01G216800 chr1B 92.762 525 29 2 2 517 251884316 251884840 0.000000e+00 750.0
22 TraesCS7B01G216800 chr1B 86.758 657 60 18 2454 3092 121407802 121408449 0.000000e+00 706.0
23 TraesCS7B01G216800 chr1B 84.314 357 42 11 3 357 642425690 642425346 1.370000e-88 337.0
24 TraesCS7B01G216800 chr2B 92.070 517 40 1 1 516 218470171 218470687 0.000000e+00 726.0
25 TraesCS7B01G216800 chr2B 91.715 519 39 3 1 516 218401458 218401975 0.000000e+00 717.0
26 TraesCS7B01G216800 chr2B 84.735 642 68 17 2469 3092 155028792 155029421 1.580000e-172 616.0
27 TraesCS7B01G216800 chr2B 86.316 95 9 2 583 673 762025672 762025578 1.960000e-17 100.0
28 TraesCS7B01G216800 chrUn 85.693 657 68 18 2455 3092 374528166 374527517 0.000000e+00 669.0
29 TraesCS7B01G216800 chrUn 85.388 657 70 18 2455 3092 22168451 22169100 0.000000e+00 658.0
30 TraesCS7B01G216800 chrUn 85.388 657 70 18 2455 3092 374530019 374529370 0.000000e+00 658.0
31 TraesCS7B01G216800 chrUn 84.644 547 60 16 2455 2983 333834982 333834442 9.820000e-145 523.0
32 TraesCS7B01G216800 chrUn 84.726 347 41 9 3 348 480791325 480791660 1.370000e-88 337.0
33 TraesCS7B01G216800 chrUn 79.054 148 23 5 531 674 68474659 68474802 9.130000e-16 95.3
34 TraesCS7B01G216800 chrUn 92.537 67 4 1 3027 3092 336449093 336449159 9.130000e-16 95.3
35 TraesCS7B01G216800 chr3B 85.714 357 38 10 3 357 483399270 483398925 6.300000e-97 364.0
36 TraesCS7B01G216800 chr2D 81.283 187 19 11 2454 2637 2247441 2247614 1.500000e-28 137.0
37 TraesCS7B01G216800 chr2D 100.000 36 0 0 485 520 87818291 87818256 1.990000e-07 67.6
38 TraesCS7B01G216800 chr5D 86.170 94 9 1 579 668 469234073 469233980 7.060000e-17 99.0
39 TraesCS7B01G216800 chr3D 97.368 38 1 0 483 520 80595204 80595241 7.160000e-07 65.8
40 TraesCS7B01G216800 chr6A 100.000 33 0 0 485 517 27562370 27562338 9.260000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G216800 chr7B 399801779 399804870 3091 True 5710.0 5710 100.0000 1 3092 1 chr7B.!!$R1 3091
1 TraesCS7B01G216800 chr7B 394864181 394865510 1329 False 2200.0 2200 96.6170 775 2096 1 chr7B.!!$F1 1321
2 TraesCS7B01G216800 chr7B 394912346 394913675 1329 False 2200.0 2200 96.6170 775 2096 1 chr7B.!!$F2 1321
3 TraesCS7B01G216800 chr7B 399871291 399872609 1318 True 2117.0 2117 95.6260 791 2112 1 chr7B.!!$R2 1321
4 TraesCS7B01G216800 chr7D 395188117 395189473 1356 False 2056.0 2056 93.9840 736 2096 1 chr7D.!!$F2 1360
5 TraesCS7B01G216800 chr7D 395295473 395296737 1264 False 1851.0 1851 92.9960 817 2096 1 chr7D.!!$F3 1279
6 TraesCS7B01G216800 chr7D 395076467 395077693 1226 False 1618.0 1618 90.7240 958 2167 1 chr7D.!!$F1 1209
7 TraesCS7B01G216800 chr7D 396443368 396445324 1956 True 1343.0 2342 92.4565 596 2454 2 chr7D.!!$R1 1858
8 TraesCS7B01G216800 chr7A 450091436 450093046 1610 True 2278.0 2278 92.4980 518 2098 1 chr7A.!!$R2 1580
9 TraesCS7B01G216800 chr7A 448478757 448480068 1311 False 1945.0 1945 93.3780 775 2096 1 chr7A.!!$F3 1321
10 TraesCS7B01G216800 chr7A 448473146 448474475 1329 False 1929.0 1929 92.9480 810 2132 1 chr7A.!!$F2 1322
11 TraesCS7B01G216800 chr6B 586651069 586651836 767 True 586.0 966 94.3950 2454 3092 2 chr6B.!!$R2 638
12 TraesCS7B01G216800 chr4A 608363095 608363611 516 False 771.0 771 93.6420 1 516 1 chr4A.!!$F1 515
13 TraesCS7B01G216800 chr1B 251884316 251884840 524 False 750.0 750 92.7620 2 517 1 chr1B.!!$F2 515
14 TraesCS7B01G216800 chr1B 121407802 121408449 647 False 706.0 706 86.7580 2454 3092 1 chr1B.!!$F1 638
15 TraesCS7B01G216800 chr2B 218470171 218470687 516 False 726.0 726 92.0700 1 516 1 chr2B.!!$F3 515
16 TraesCS7B01G216800 chr2B 218401458 218401975 517 False 717.0 717 91.7150 1 516 1 chr2B.!!$F2 515
17 TraesCS7B01G216800 chr2B 155028792 155029421 629 False 616.0 616 84.7350 2469 3092 1 chr2B.!!$F1 623
18 TraesCS7B01G216800 chrUn 374527517 374530019 2502 True 663.5 669 85.5405 2455 3092 2 chrUn.!!$R2 637
19 TraesCS7B01G216800 chrUn 22168451 22169100 649 False 658.0 658 85.3880 2455 3092 1 chrUn.!!$F1 637
20 TraesCS7B01G216800 chrUn 333834442 333834982 540 True 523.0 523 84.6440 2455 2983 1 chrUn.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.037160 TGATGCACACTGCCTGATGT 59.963 50.0 0.0 0.0 44.23 3.06 F
509 510 0.037697 TAGCAACGCACGGACATTCT 60.038 50.0 0.0 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 1420 2.100603 CTCGTCCTCGGAGAACGC 59.899 66.667 12.20 0.0 43.86 4.84 R
2333 2523 0.395173 TAAAGCCGGCCAAATCTCCC 60.395 55.000 26.15 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.821216 TCGGCTTGAGGAAATCAACC 58.179 50.000 0.00 0.00 43.09 3.77
20 21 1.073125 TCGGCTTGAGGAAATCAACCA 59.927 47.619 0.00 0.00 43.09 3.67
21 22 1.885887 CGGCTTGAGGAAATCAACCAA 59.114 47.619 0.00 0.00 43.09 3.67
22 23 2.095059 CGGCTTGAGGAAATCAACCAAG 60.095 50.000 0.00 0.00 43.09 3.61
23 24 3.157087 GGCTTGAGGAAATCAACCAAGA 58.843 45.455 0.00 0.00 43.09 3.02
24 25 3.766051 GGCTTGAGGAAATCAACCAAGAT 59.234 43.478 0.00 0.00 43.09 2.40
25 26 4.381292 GGCTTGAGGAAATCAACCAAGATG 60.381 45.833 0.00 0.00 43.09 2.90
26 27 4.219288 GCTTGAGGAAATCAACCAAGATGT 59.781 41.667 0.00 0.00 43.09 3.06
27 28 5.279156 GCTTGAGGAAATCAACCAAGATGTT 60.279 40.000 0.00 0.00 43.09 2.71
28 29 6.729690 TTGAGGAAATCAACCAAGATGTTT 57.270 33.333 0.00 0.00 43.09 2.83
29 30 7.523709 GCTTGAGGAAATCAACCAAGATGTTTA 60.524 37.037 0.00 0.00 43.09 2.01
30 31 7.214467 TGAGGAAATCAACCAAGATGTTTAC 57.786 36.000 0.00 0.00 34.02 2.01
31 32 6.208599 TGAGGAAATCAACCAAGATGTTTACC 59.791 38.462 0.00 0.00 34.02 2.85
32 33 6.074648 AGGAAATCAACCAAGATGTTTACCA 58.925 36.000 0.00 0.00 0.00 3.25
33 34 6.209391 AGGAAATCAACCAAGATGTTTACCAG 59.791 38.462 0.00 0.00 0.00 4.00
34 35 6.208599 GGAAATCAACCAAGATGTTTACCAGA 59.791 38.462 0.00 0.00 0.00 3.86
35 36 7.255801 GGAAATCAACCAAGATGTTTACCAGAA 60.256 37.037 0.00 0.00 0.00 3.02
36 37 7.595819 AATCAACCAAGATGTTTACCAGAAA 57.404 32.000 0.00 0.00 0.00 2.52
37 38 7.781324 ATCAACCAAGATGTTTACCAGAAAT 57.219 32.000 0.00 0.00 0.00 2.17
38 39 7.595819 TCAACCAAGATGTTTACCAGAAATT 57.404 32.000 0.00 0.00 0.00 1.82
39 40 7.432869 TCAACCAAGATGTTTACCAGAAATTG 58.567 34.615 0.00 0.00 0.00 2.32
40 41 6.976934 ACCAAGATGTTTACCAGAAATTGT 57.023 33.333 0.00 0.00 0.00 2.71
41 42 8.356657 CAACCAAGATGTTTACCAGAAATTGTA 58.643 33.333 0.00 0.00 0.00 2.41
42 43 8.650143 ACCAAGATGTTTACCAGAAATTGTAT 57.350 30.769 0.00 0.00 0.00 2.29
43 44 8.522830 ACCAAGATGTTTACCAGAAATTGTATG 58.477 33.333 0.00 0.00 0.00 2.39
44 45 7.489113 CCAAGATGTTTACCAGAAATTGTATGC 59.511 37.037 0.00 0.00 0.00 3.14
45 46 7.944729 AGATGTTTACCAGAAATTGTATGCT 57.055 32.000 0.00 0.00 0.00 3.79
46 47 8.353423 AGATGTTTACCAGAAATTGTATGCTT 57.647 30.769 0.00 0.00 0.00 3.91
47 48 8.806146 AGATGTTTACCAGAAATTGTATGCTTT 58.194 29.630 0.00 0.00 0.00 3.51
48 49 8.986477 ATGTTTACCAGAAATTGTATGCTTTC 57.014 30.769 0.00 0.00 0.00 2.62
49 50 8.177119 TGTTTACCAGAAATTGTATGCTTTCT 57.823 30.769 0.00 0.00 41.24 2.52
50 51 9.290988 TGTTTACCAGAAATTGTATGCTTTCTA 57.709 29.630 0.00 0.00 39.15 2.10
53 54 9.679661 TTACCAGAAATTGTATGCTTTCTATCA 57.320 29.630 0.00 0.00 39.15 2.15
54 55 8.218338 ACCAGAAATTGTATGCTTTCTATCAG 57.782 34.615 0.00 0.00 39.15 2.90
55 56 7.831193 ACCAGAAATTGTATGCTTTCTATCAGT 59.169 33.333 0.00 0.00 39.15 3.41
56 57 8.680903 CCAGAAATTGTATGCTTTCTATCAGTT 58.319 33.333 0.00 0.00 39.15 3.16
57 58 9.713740 CAGAAATTGTATGCTTTCTATCAGTTC 57.286 33.333 0.00 0.00 39.15 3.01
58 59 8.607459 AGAAATTGTATGCTTTCTATCAGTTCG 58.393 33.333 0.00 0.00 39.34 3.95
59 60 6.851222 ATTGTATGCTTTCTATCAGTTCGG 57.149 37.500 0.00 0.00 0.00 4.30
60 61 4.119862 TGTATGCTTTCTATCAGTTCGGC 58.880 43.478 0.00 0.00 0.00 5.54
61 62 2.760634 TGCTTTCTATCAGTTCGGCA 57.239 45.000 0.00 0.00 0.00 5.69
62 63 2.346803 TGCTTTCTATCAGTTCGGCAC 58.653 47.619 0.00 0.00 0.00 5.01
63 64 2.289382 TGCTTTCTATCAGTTCGGCACA 60.289 45.455 0.00 0.00 0.00 4.57
64 65 2.094417 GCTTTCTATCAGTTCGGCACAC 59.906 50.000 0.00 0.00 0.00 3.82
65 66 2.380084 TTCTATCAGTTCGGCACACC 57.620 50.000 0.00 0.00 0.00 4.16
66 67 1.262417 TCTATCAGTTCGGCACACCA 58.738 50.000 0.00 0.00 34.57 4.17
67 68 1.067142 TCTATCAGTTCGGCACACCAC 60.067 52.381 0.00 0.00 34.57 4.16
68 69 0.682292 TATCAGTTCGGCACACCACA 59.318 50.000 0.00 0.00 34.57 4.17
69 70 0.884704 ATCAGTTCGGCACACCACAC 60.885 55.000 0.00 0.00 34.57 3.82
70 71 1.817520 CAGTTCGGCACACCACACA 60.818 57.895 0.00 0.00 34.57 3.72
71 72 1.817941 AGTTCGGCACACCACACAC 60.818 57.895 0.00 0.00 34.57 3.82
72 73 2.109739 GTTCGGCACACCACACACA 61.110 57.895 0.00 0.00 34.57 3.72
73 74 1.377333 TTCGGCACACCACACACAA 60.377 52.632 0.00 0.00 34.57 3.33
74 75 0.749818 TTCGGCACACCACACACAAT 60.750 50.000 0.00 0.00 34.57 2.71
75 76 1.008652 CGGCACACCACACACAATG 60.009 57.895 0.00 0.00 34.57 2.82
76 77 1.723608 CGGCACACCACACACAATGT 61.724 55.000 0.00 0.00 44.81 2.71
77 78 0.459489 GGCACACCACACACAATGTT 59.541 50.000 0.00 0.00 40.64 2.71
78 79 1.678627 GGCACACCACACACAATGTTA 59.321 47.619 0.00 0.00 40.64 2.41
79 80 2.099921 GGCACACCACACACAATGTTAA 59.900 45.455 0.00 0.00 40.64 2.01
80 81 3.371168 GCACACCACACACAATGTTAAG 58.629 45.455 0.00 0.00 40.64 1.85
81 82 3.181491 GCACACCACACACAATGTTAAGT 60.181 43.478 0.00 0.00 40.64 2.24
82 83 4.035792 GCACACCACACACAATGTTAAGTA 59.964 41.667 0.00 0.00 40.64 2.24
83 84 5.507077 CACACCACACACAATGTTAAGTAC 58.493 41.667 0.00 0.00 40.64 2.73
84 85 5.295787 CACACCACACACAATGTTAAGTACT 59.704 40.000 0.00 0.00 40.64 2.73
85 86 5.295787 ACACCACACACAATGTTAAGTACTG 59.704 40.000 0.00 0.00 40.64 2.74
86 87 5.295787 CACCACACACAATGTTAAGTACTGT 59.704 40.000 0.00 0.00 40.64 3.55
87 88 5.295787 ACCACACACAATGTTAAGTACTGTG 59.704 40.000 0.00 1.61 40.64 3.66
88 89 5.525745 CCACACACAATGTTAAGTACTGTGA 59.474 40.000 14.05 0.00 40.64 3.58
89 90 6.292865 CCACACACAATGTTAAGTACTGTGAG 60.293 42.308 14.05 9.61 40.64 3.51
90 91 5.236478 ACACACAATGTTAAGTACTGTGAGC 59.764 40.000 14.05 0.00 38.98 4.26
91 92 5.466728 CACACAATGTTAAGTACTGTGAGCT 59.533 40.000 14.05 0.00 36.76 4.09
92 93 6.017934 CACACAATGTTAAGTACTGTGAGCTT 60.018 38.462 14.05 0.00 36.76 3.74
93 94 6.542370 ACACAATGTTAAGTACTGTGAGCTTT 59.458 34.615 14.05 0.78 36.76 3.51
94 95 6.852853 CACAATGTTAAGTACTGTGAGCTTTG 59.147 38.462 0.00 5.15 35.85 2.77
95 96 6.017109 ACAATGTTAAGTACTGTGAGCTTTGG 60.017 38.462 0.00 0.00 0.00 3.28
96 97 3.813166 TGTTAAGTACTGTGAGCTTTGGC 59.187 43.478 0.00 0.00 39.06 4.52
97 98 2.638480 AAGTACTGTGAGCTTTGGCA 57.362 45.000 0.00 0.00 41.70 4.92
98 99 2.867109 AGTACTGTGAGCTTTGGCAT 57.133 45.000 0.00 0.00 41.70 4.40
99 100 2.704572 AGTACTGTGAGCTTTGGCATC 58.295 47.619 0.00 0.00 41.70 3.91
100 101 2.304180 AGTACTGTGAGCTTTGGCATCT 59.696 45.455 0.00 0.00 41.70 2.90
101 102 2.283145 ACTGTGAGCTTTGGCATCTT 57.717 45.000 0.00 0.00 41.70 2.40
102 103 2.590821 ACTGTGAGCTTTGGCATCTTT 58.409 42.857 0.00 0.00 41.70 2.52
103 104 2.295349 ACTGTGAGCTTTGGCATCTTTG 59.705 45.455 0.00 0.00 41.70 2.77
104 105 1.614903 TGTGAGCTTTGGCATCTTTGG 59.385 47.619 0.00 0.00 41.70 3.28
105 106 1.615392 GTGAGCTTTGGCATCTTTGGT 59.385 47.619 0.00 0.00 41.70 3.67
106 107 2.036346 GTGAGCTTTGGCATCTTTGGTT 59.964 45.455 0.00 0.00 41.70 3.67
107 108 2.297033 TGAGCTTTGGCATCTTTGGTTC 59.703 45.455 0.00 0.00 41.70 3.62
108 109 1.620323 AGCTTTGGCATCTTTGGTTCC 59.380 47.619 0.00 0.00 41.70 3.62
109 110 1.344114 GCTTTGGCATCTTTGGTTCCA 59.656 47.619 0.00 0.00 38.54 3.53
110 111 2.611224 GCTTTGGCATCTTTGGTTCCAG 60.611 50.000 0.00 0.00 38.54 3.86
111 112 2.380064 TTGGCATCTTTGGTTCCAGT 57.620 45.000 0.00 0.00 0.00 4.00
112 113 2.380064 TGGCATCTTTGGTTCCAGTT 57.620 45.000 0.00 0.00 0.00 3.16
113 114 2.676748 TGGCATCTTTGGTTCCAGTTT 58.323 42.857 0.00 0.00 0.00 2.66
114 115 3.838565 TGGCATCTTTGGTTCCAGTTTA 58.161 40.909 0.00 0.00 0.00 2.01
115 116 3.572255 TGGCATCTTTGGTTCCAGTTTAC 59.428 43.478 0.00 0.00 0.00 2.01
116 117 3.572255 GGCATCTTTGGTTCCAGTTTACA 59.428 43.478 0.00 0.00 0.00 2.41
117 118 4.220602 GGCATCTTTGGTTCCAGTTTACAT 59.779 41.667 0.00 0.00 0.00 2.29
118 119 5.417580 GGCATCTTTGGTTCCAGTTTACATA 59.582 40.000 0.00 0.00 0.00 2.29
119 120 6.096846 GGCATCTTTGGTTCCAGTTTACATAT 59.903 38.462 0.00 0.00 0.00 1.78
120 121 6.974622 GCATCTTTGGTTCCAGTTTACATATG 59.025 38.462 0.00 0.00 0.00 1.78
121 122 7.362920 GCATCTTTGGTTCCAGTTTACATATGT 60.363 37.037 13.93 13.93 0.00 2.29
122 123 9.173021 CATCTTTGGTTCCAGTTTACATATGTA 57.827 33.333 11.62 11.62 0.00 2.29
123 124 8.786826 TCTTTGGTTCCAGTTTACATATGTAG 57.213 34.615 14.96 4.46 0.00 2.74
124 125 8.380099 TCTTTGGTTCCAGTTTACATATGTAGT 58.620 33.333 14.96 2.68 0.00 2.73
125 126 8.927675 TTTGGTTCCAGTTTACATATGTAGTT 57.072 30.769 14.96 3.38 0.00 2.24
126 127 8.927675 TTGGTTCCAGTTTACATATGTAGTTT 57.072 30.769 14.96 3.05 0.00 2.66
127 128 8.927675 TGGTTCCAGTTTACATATGTAGTTTT 57.072 30.769 14.96 1.44 0.00 2.43
128 129 8.788806 TGGTTCCAGTTTACATATGTAGTTTTG 58.211 33.333 14.96 11.86 0.00 2.44
129 130 9.005777 GGTTCCAGTTTACATATGTAGTTTTGA 57.994 33.333 14.96 8.52 0.00 2.69
132 133 8.673711 TCCAGTTTACATATGTAGTTTTGATGC 58.326 33.333 14.96 1.25 0.00 3.91
133 134 8.458052 CCAGTTTACATATGTAGTTTTGATGCA 58.542 33.333 14.96 0.00 0.00 3.96
134 135 9.277565 CAGTTTACATATGTAGTTTTGATGCAC 57.722 33.333 14.96 0.00 0.00 4.57
135 136 9.008965 AGTTTACATATGTAGTTTTGATGCACA 57.991 29.630 14.96 0.00 0.00 4.57
136 137 9.061610 GTTTACATATGTAGTTTTGATGCACAC 57.938 33.333 14.96 0.00 0.00 3.82
137 138 8.560355 TTACATATGTAGTTTTGATGCACACT 57.440 30.769 14.96 0.00 0.00 3.55
138 139 6.845302 ACATATGTAGTTTTGATGCACACTG 58.155 36.000 6.56 0.00 0.00 3.66
139 140 3.624326 TGTAGTTTTGATGCACACTGC 57.376 42.857 0.00 0.00 45.29 4.40
140 141 2.293122 TGTAGTTTTGATGCACACTGCC 59.707 45.455 0.00 0.00 44.23 4.85
141 142 1.696063 AGTTTTGATGCACACTGCCT 58.304 45.000 0.00 0.00 44.23 4.75
142 143 1.338973 AGTTTTGATGCACACTGCCTG 59.661 47.619 0.00 0.00 44.23 4.85
143 144 1.337703 GTTTTGATGCACACTGCCTGA 59.662 47.619 0.00 0.00 44.23 3.86
144 145 1.913778 TTTGATGCACACTGCCTGAT 58.086 45.000 0.00 0.00 44.23 2.90
145 146 1.170442 TTGATGCACACTGCCTGATG 58.830 50.000 0.00 0.00 44.23 3.07
146 147 0.037160 TGATGCACACTGCCTGATGT 59.963 50.000 0.00 0.00 44.23 3.06
149 150 4.391869 CACACTGCCTGATGTGCT 57.608 55.556 0.00 0.00 39.79 4.40
150 151 2.168947 CACACTGCCTGATGTGCTC 58.831 57.895 0.00 0.00 39.79 4.26
151 152 0.321387 CACACTGCCTGATGTGCTCT 60.321 55.000 0.00 0.00 39.79 4.09
152 153 0.399454 ACACTGCCTGATGTGCTCTT 59.601 50.000 0.00 0.00 37.68 2.85
153 154 1.202855 ACACTGCCTGATGTGCTCTTT 60.203 47.619 0.00 0.00 37.68 2.52
154 155 1.884579 CACTGCCTGATGTGCTCTTTT 59.115 47.619 0.00 0.00 0.00 2.27
155 156 2.295349 CACTGCCTGATGTGCTCTTTTT 59.705 45.455 0.00 0.00 0.00 1.94
196 197 9.764363 TGTTAGATAATAGGCATAACTTCAGTG 57.236 33.333 0.00 0.00 0.00 3.66
197 198 9.765795 GTTAGATAATAGGCATAACTTCAGTGT 57.234 33.333 0.00 0.00 0.00 3.55
198 199 9.982651 TTAGATAATAGGCATAACTTCAGTGTC 57.017 33.333 0.00 0.00 0.00 3.67
199 200 8.256356 AGATAATAGGCATAACTTCAGTGTCT 57.744 34.615 0.00 0.00 0.00 3.41
200 201 8.364142 AGATAATAGGCATAACTTCAGTGTCTC 58.636 37.037 0.00 0.00 0.00 3.36
201 202 6.552445 AATAGGCATAACTTCAGTGTCTCT 57.448 37.500 0.00 0.00 0.00 3.10
202 203 4.464069 AGGCATAACTTCAGTGTCTCTC 57.536 45.455 0.00 0.00 0.00 3.20
203 204 3.196685 AGGCATAACTTCAGTGTCTCTCC 59.803 47.826 0.00 0.00 0.00 3.71
204 205 3.196685 GGCATAACTTCAGTGTCTCTCCT 59.803 47.826 0.00 0.00 0.00 3.69
205 206 4.180057 GCATAACTTCAGTGTCTCTCCTG 58.820 47.826 0.00 0.00 0.00 3.86
206 207 4.322349 GCATAACTTCAGTGTCTCTCCTGT 60.322 45.833 0.00 0.00 0.00 4.00
207 208 5.406649 CATAACTTCAGTGTCTCTCCTGTC 58.593 45.833 0.00 0.00 0.00 3.51
208 209 2.950781 ACTTCAGTGTCTCTCCTGTCA 58.049 47.619 0.00 0.00 0.00 3.58
209 210 3.300388 ACTTCAGTGTCTCTCCTGTCAA 58.700 45.455 0.00 0.00 0.00 3.18
210 211 3.900601 ACTTCAGTGTCTCTCCTGTCAAT 59.099 43.478 0.00 0.00 0.00 2.57
211 212 3.949842 TCAGTGTCTCTCCTGTCAATG 57.050 47.619 0.00 0.00 0.00 2.82
212 213 3.500343 TCAGTGTCTCTCCTGTCAATGA 58.500 45.455 0.00 0.00 33.64 2.57
213 214 3.897505 TCAGTGTCTCTCCTGTCAATGAA 59.102 43.478 0.00 0.00 33.25 2.57
214 215 4.021632 TCAGTGTCTCTCCTGTCAATGAAG 60.022 45.833 0.00 0.00 33.25 3.02
215 216 4.021632 CAGTGTCTCTCCTGTCAATGAAGA 60.022 45.833 0.00 0.00 0.00 2.87
216 217 4.220382 AGTGTCTCTCCTGTCAATGAAGAG 59.780 45.833 3.86 3.86 0.00 2.85
217 218 3.056250 TGTCTCTCCTGTCAATGAAGAGC 60.056 47.826 5.12 2.51 0.00 4.09
218 219 2.499289 TCTCTCCTGTCAATGAAGAGCC 59.501 50.000 5.12 0.00 0.00 4.70
219 220 2.500910 CTCTCCTGTCAATGAAGAGCCT 59.499 50.000 0.00 0.00 0.00 4.58
220 221 3.703556 CTCTCCTGTCAATGAAGAGCCTA 59.296 47.826 0.00 0.00 0.00 3.93
221 222 3.703556 TCTCCTGTCAATGAAGAGCCTAG 59.296 47.826 2.41 0.00 0.00 3.02
222 223 3.703556 CTCCTGTCAATGAAGAGCCTAGA 59.296 47.826 0.00 0.00 0.00 2.43
223 224 4.293494 TCCTGTCAATGAAGAGCCTAGAT 58.707 43.478 0.00 0.00 0.00 1.98
224 225 4.100653 TCCTGTCAATGAAGAGCCTAGATG 59.899 45.833 0.00 0.00 0.00 2.90
225 226 4.100653 CCTGTCAATGAAGAGCCTAGATGA 59.899 45.833 0.00 0.00 0.00 2.92
226 227 5.221682 CCTGTCAATGAAGAGCCTAGATGAT 60.222 44.000 0.00 0.00 0.00 2.45
227 228 6.244552 TGTCAATGAAGAGCCTAGATGATT 57.755 37.500 0.00 0.00 0.00 2.57
228 229 6.656902 TGTCAATGAAGAGCCTAGATGATTT 58.343 36.000 0.00 0.00 0.00 2.17
229 230 7.114754 TGTCAATGAAGAGCCTAGATGATTTT 58.885 34.615 0.00 0.00 0.00 1.82
230 231 8.267183 TGTCAATGAAGAGCCTAGATGATTTTA 58.733 33.333 0.00 0.00 0.00 1.52
231 232 8.555361 GTCAATGAAGAGCCTAGATGATTTTAC 58.445 37.037 0.00 0.00 0.00 2.01
232 233 8.267183 TCAATGAAGAGCCTAGATGATTTTACA 58.733 33.333 0.00 0.00 0.00 2.41
233 234 8.557864 CAATGAAGAGCCTAGATGATTTTACAG 58.442 37.037 0.00 0.00 0.00 2.74
234 235 6.051717 TGAAGAGCCTAGATGATTTTACAGC 58.948 40.000 0.00 0.00 0.00 4.40
235 236 5.620738 AGAGCCTAGATGATTTTACAGCA 57.379 39.130 0.00 0.00 0.00 4.41
236 237 5.994250 AGAGCCTAGATGATTTTACAGCAA 58.006 37.500 0.00 0.00 0.00 3.91
237 238 6.418101 AGAGCCTAGATGATTTTACAGCAAA 58.582 36.000 0.00 0.00 0.00 3.68
238 239 6.541641 AGAGCCTAGATGATTTTACAGCAAAG 59.458 38.462 0.00 0.00 0.00 2.77
239 240 6.418101 AGCCTAGATGATTTTACAGCAAAGA 58.582 36.000 0.00 0.00 0.00 2.52
240 241 7.059156 AGCCTAGATGATTTTACAGCAAAGAT 58.941 34.615 0.00 0.00 0.00 2.40
241 242 8.213679 AGCCTAGATGATTTTACAGCAAAGATA 58.786 33.333 0.00 0.00 0.00 1.98
242 243 8.286097 GCCTAGATGATTTTACAGCAAAGATAC 58.714 37.037 0.00 0.00 0.00 2.24
243 244 9.553064 CCTAGATGATTTTACAGCAAAGATACT 57.447 33.333 0.00 0.00 0.00 2.12
249 250 9.383519 TGATTTTACAGCAAAGATACTAAGAGG 57.616 33.333 0.00 0.00 0.00 3.69
250 251 9.601217 GATTTTACAGCAAAGATACTAAGAGGA 57.399 33.333 0.00 0.00 0.00 3.71
255 256 8.719645 ACAGCAAAGATACTAAGAGGATATCT 57.280 34.615 2.05 0.00 41.27 1.98
270 271 9.440761 AAGAGGATATCTTGAGTTATTGTAGGT 57.559 33.333 2.05 0.00 46.80 3.08
271 272 9.440761 AGAGGATATCTTGAGTTATTGTAGGTT 57.559 33.333 2.05 0.00 32.99 3.50
301 302 8.800370 TCTGTTATGAGTAATATGTTTTGGCA 57.200 30.769 0.00 0.00 0.00 4.92
302 303 9.237187 TCTGTTATGAGTAATATGTTTTGGCAA 57.763 29.630 0.00 0.00 0.00 4.52
308 309 9.941325 ATGAGTAATATGTTTTGGCAATTTGAA 57.059 25.926 0.00 0.00 0.00 2.69
309 310 9.770097 TGAGTAATATGTTTTGGCAATTTGAAA 57.230 25.926 0.00 0.00 0.00 2.69
343 344 9.959749 ACGATTTGTGTATGAAAATTTTACACT 57.040 25.926 24.99 12.90 43.79 3.55
367 368 9.925268 ACTGTTAAGTCTTAAACATTGTTTACG 57.075 29.630 19.06 17.35 26.77 3.18
373 374 7.136772 AGTCTTAAACATTGTTTACGAAAGGC 58.863 34.615 22.59 18.64 0.00 4.35
374 375 7.012989 AGTCTTAAACATTGTTTACGAAAGGCT 59.987 33.333 22.59 20.07 0.00 4.58
375 376 7.646526 GTCTTAAACATTGTTTACGAAAGGCTT 59.353 33.333 22.59 0.00 0.00 4.35
376 377 8.838365 TCTTAAACATTGTTTACGAAAGGCTTA 58.162 29.630 20.10 5.01 0.00 3.09
377 378 9.453325 CTTAAACATTGTTTACGAAAGGCTTAA 57.547 29.630 19.06 4.13 0.00 1.85
378 379 9.798994 TTAAACATTGTTTACGAAAGGCTTAAA 57.201 25.926 19.06 0.00 0.00 1.52
379 380 7.924103 AACATTGTTTACGAAAGGCTTAAAG 57.076 32.000 0.00 0.00 0.00 1.85
380 381 7.034685 ACATTGTTTACGAAAGGCTTAAAGT 57.965 32.000 0.00 3.78 0.00 2.66
381 382 7.136772 ACATTGTTTACGAAAGGCTTAAAGTC 58.863 34.615 0.00 0.00 0.00 3.01
382 383 6.930667 TTGTTTACGAAAGGCTTAAAGTCT 57.069 33.333 0.00 0.00 0.00 3.24
383 384 6.295039 TGTTTACGAAAGGCTTAAAGTCTG 57.705 37.500 0.00 0.00 25.77 3.51
384 385 6.050432 TGTTTACGAAAGGCTTAAAGTCTGA 58.950 36.000 0.00 0.00 25.77 3.27
385 386 6.539464 TGTTTACGAAAGGCTTAAAGTCTGAA 59.461 34.615 0.00 0.00 25.77 3.02
386 387 7.066043 TGTTTACGAAAGGCTTAAAGTCTGAAA 59.934 33.333 0.00 0.00 25.77 2.69
387 388 7.556733 TTACGAAAGGCTTAAAGTCTGAAAA 57.443 32.000 0.00 0.00 25.77 2.29
388 389 6.635030 ACGAAAGGCTTAAAGTCTGAAAAT 57.365 33.333 0.00 0.00 25.77 1.82
389 390 7.739498 ACGAAAGGCTTAAAGTCTGAAAATA 57.261 32.000 0.00 0.00 25.77 1.40
390 391 8.336801 ACGAAAGGCTTAAAGTCTGAAAATAT 57.663 30.769 0.00 0.00 25.77 1.28
391 392 9.444600 ACGAAAGGCTTAAAGTCTGAAAATATA 57.555 29.630 0.00 0.00 25.77 0.86
418 419 9.739276 TTAATCAAGATACCATCTTCTTTGTGT 57.261 29.630 0.00 0.00 46.17 3.72
419 420 7.621428 ATCAAGATACCATCTTCTTTGTGTG 57.379 36.000 0.00 0.00 46.17 3.82
420 421 6.533730 TCAAGATACCATCTTCTTTGTGTGT 58.466 36.000 0.00 0.00 46.17 3.72
421 422 6.998074 TCAAGATACCATCTTCTTTGTGTGTT 59.002 34.615 0.00 0.00 46.17 3.32
422 423 7.502226 TCAAGATACCATCTTCTTTGTGTGTTT 59.498 33.333 0.00 0.00 46.17 2.83
423 424 7.206981 AGATACCATCTTCTTTGTGTGTTTG 57.793 36.000 0.00 0.00 35.76 2.93
424 425 6.772716 AGATACCATCTTCTTTGTGTGTTTGT 59.227 34.615 0.00 0.00 35.76 2.83
425 426 5.659440 ACCATCTTCTTTGTGTGTTTGTT 57.341 34.783 0.00 0.00 0.00 2.83
426 427 6.767524 ACCATCTTCTTTGTGTGTTTGTTA 57.232 33.333 0.00 0.00 0.00 2.41
427 428 7.346751 ACCATCTTCTTTGTGTGTTTGTTAT 57.653 32.000 0.00 0.00 0.00 1.89
428 429 7.781056 ACCATCTTCTTTGTGTGTTTGTTATT 58.219 30.769 0.00 0.00 0.00 1.40
429 430 8.908903 ACCATCTTCTTTGTGTGTTTGTTATTA 58.091 29.630 0.00 0.00 0.00 0.98
430 431 9.743057 CCATCTTCTTTGTGTGTTTGTTATTAA 57.257 29.630 0.00 0.00 0.00 1.40
437 438 9.848172 CTTTGTGTGTTTGTTATTAAAATCAGC 57.152 29.630 0.00 0.00 0.00 4.26
438 439 7.938563 TGTGTGTTTGTTATTAAAATCAGCC 57.061 32.000 0.00 0.00 0.00 4.85
439 440 7.492524 TGTGTGTTTGTTATTAAAATCAGCCA 58.507 30.769 0.00 0.00 0.00 4.75
440 441 8.147058 TGTGTGTTTGTTATTAAAATCAGCCAT 58.853 29.630 0.00 0.00 0.00 4.40
441 442 8.987890 GTGTGTTTGTTATTAAAATCAGCCATT 58.012 29.630 0.00 0.00 0.00 3.16
442 443 9.553064 TGTGTTTGTTATTAAAATCAGCCATTT 57.447 25.926 0.00 0.00 36.12 2.32
444 445 9.770097 TGTTTGTTATTAAAATCAGCCATTTCA 57.230 25.926 0.00 0.00 33.16 2.69
453 454 9.651913 TTAAAATCAGCCATTTCAATTTACTCC 57.348 29.630 0.00 0.00 33.16 3.85
454 455 6.855763 AATCAGCCATTTCAATTTACTCCA 57.144 33.333 0.00 0.00 0.00 3.86
455 456 7.427989 AATCAGCCATTTCAATTTACTCCAT 57.572 32.000 0.00 0.00 0.00 3.41
456 457 6.211587 TCAGCCATTTCAATTTACTCCATG 57.788 37.500 0.00 0.00 0.00 3.66
457 458 5.951148 TCAGCCATTTCAATTTACTCCATGA 59.049 36.000 0.00 0.00 0.00 3.07
458 459 6.436847 TCAGCCATTTCAATTTACTCCATGAA 59.563 34.615 0.00 0.00 0.00 2.57
459 460 7.039152 TCAGCCATTTCAATTTACTCCATGAAA 60.039 33.333 0.00 2.69 43.53 2.69
461 462 8.323567 AGCCATTTCAATTTACTCCATGAAATT 58.676 29.630 9.23 0.00 45.37 1.82
462 463 8.606602 GCCATTTCAATTTACTCCATGAAATTC 58.393 33.333 9.23 2.96 45.37 2.17
463 464 9.880157 CCATTTCAATTTACTCCATGAAATTCT 57.120 29.630 9.23 0.00 45.37 2.40
484 485 9.546428 AATTCTTGTATCATGATCATGTTACGA 57.454 29.630 32.21 30.63 42.55 3.43
485 486 8.579682 TTCTTGTATCATGATCATGTTACGAG 57.420 34.615 37.06 37.06 45.74 4.18
486 487 6.642540 TCTTGTATCATGATCATGTTACGAGC 59.357 38.462 37.45 23.75 44.99 5.03
487 488 5.230182 TGTATCATGATCATGTTACGAGCC 58.770 41.667 32.21 19.69 42.55 4.70
488 489 3.111853 TCATGATCATGTTACGAGCCC 57.888 47.619 30.01 0.00 39.72 5.19
489 490 1.794701 CATGATCATGTTACGAGCCCG 59.205 52.381 24.87 0.00 36.61 6.13
490 491 2.803133 CATGATCATGTTACGAGCCCGT 60.803 50.000 24.87 0.00 41.75 5.28
491 492 5.761830 TCATGATCATGTTACGAGCCCGTA 61.762 45.833 30.01 7.99 43.06 4.02
492 493 7.503011 TCATGATCATGTTACGAGCCCGTAG 62.503 48.000 30.01 4.18 42.98 3.51
505 506 2.731721 CGTAGCAACGCACGGACA 60.732 61.111 0.00 0.00 43.12 4.02
506 507 2.092291 CGTAGCAACGCACGGACAT 61.092 57.895 0.00 0.00 43.12 3.06
507 508 1.623081 CGTAGCAACGCACGGACATT 61.623 55.000 0.00 0.00 43.12 2.71
508 509 0.094730 GTAGCAACGCACGGACATTC 59.905 55.000 0.00 0.00 0.00 2.67
509 510 0.037697 TAGCAACGCACGGACATTCT 60.038 50.000 0.00 0.00 0.00 2.40
510 511 0.037697 AGCAACGCACGGACATTCTA 60.038 50.000 0.00 0.00 0.00 2.10
511 512 0.094730 GCAACGCACGGACATTCTAC 59.905 55.000 0.00 0.00 0.00 2.59
512 513 1.710013 CAACGCACGGACATTCTACT 58.290 50.000 0.00 0.00 0.00 2.57
513 514 2.871133 CAACGCACGGACATTCTACTA 58.129 47.619 0.00 0.00 0.00 1.82
514 515 2.846039 ACGCACGGACATTCTACTAG 57.154 50.000 0.00 0.00 0.00 2.57
515 516 2.089980 ACGCACGGACATTCTACTAGT 58.910 47.619 0.00 0.00 0.00 2.57
516 517 3.273434 ACGCACGGACATTCTACTAGTA 58.727 45.455 1.89 1.89 0.00 1.82
517 518 3.691118 ACGCACGGACATTCTACTAGTAA 59.309 43.478 3.76 0.00 0.00 2.24
518 519 4.156556 ACGCACGGACATTCTACTAGTAAA 59.843 41.667 3.76 2.50 0.00 2.01
519 520 5.097529 CGCACGGACATTCTACTAGTAAAA 58.902 41.667 3.76 0.00 0.00 1.52
520 521 5.229469 CGCACGGACATTCTACTAGTAAAAG 59.771 44.000 3.76 0.00 0.00 2.27
521 522 6.098017 GCACGGACATTCTACTAGTAAAAGT 58.902 40.000 3.76 5.04 0.00 2.66
594 596 6.910536 AAAGAAGCAATAATACCTCTGTCG 57.089 37.500 0.00 0.00 0.00 4.35
675 687 0.969149 TGACAGCTGAATCTGACGGT 59.031 50.000 23.35 0.00 37.51 4.83
716 728 1.680338 GTTAAGATCCGCCAGCCAAT 58.320 50.000 0.00 0.00 0.00 3.16
759 786 3.359695 TTAGGATAGCGTTGCCCTTTT 57.640 42.857 0.16 0.00 0.00 2.27
1369 1420 4.125695 GGGTCCGTCTTCGTCGGG 62.126 72.222 4.58 0.00 46.82 5.14
2118 2210 1.825090 TTTAGGCACTCCACATGCTG 58.175 50.000 0.00 0.00 42.93 4.41
2145 2238 1.943693 TTTTTCTTGTGCTGCGCGC 60.944 52.632 27.26 27.26 39.75 6.86
2163 2256 3.728864 CGCGCTCTTCTGCAAAAATGTAT 60.729 43.478 5.56 0.00 0.00 2.29
2266 2455 3.909430 TGTCTTAGCATTCGTCTTCGTT 58.091 40.909 0.00 0.00 38.33 3.85
2269 2458 6.097356 TGTCTTAGCATTCGTCTTCGTTAAT 58.903 36.000 0.00 0.00 38.33 1.40
2288 2477 1.018910 TCTCATCGTCATACGCCGAA 58.981 50.000 0.00 0.00 42.21 4.30
2305 2495 1.300481 GAAAACCATCCTAGCGCTCC 58.700 55.000 16.34 0.00 0.00 4.70
2329 2519 4.373116 TGGTGCTTCGTCCTCGGC 62.373 66.667 0.00 0.00 37.69 5.54
2331 2521 4.415332 GTGCTTCGTCCTCGGCGA 62.415 66.667 10.14 10.14 37.69 5.54
2332 2522 4.415332 TGCTTCGTCCTCGGCGAC 62.415 66.667 4.99 0.00 38.14 5.19
2351 2541 1.682344 GGGAGATTTGGCCGGCTTT 60.682 57.895 28.56 8.64 0.00 3.51
2368 2558 2.870035 GCTTTAATTTGGCGGCTGGTTT 60.870 45.455 11.43 1.46 0.00 3.27
2370 2560 1.917872 TAATTTGGCGGCTGGTTTCT 58.082 45.000 11.43 0.00 0.00 2.52
2373 2563 0.467290 TTTGGCGGCTGGTTTCTCTT 60.467 50.000 11.43 0.00 0.00 2.85
2379 2569 1.335324 CGGCTGGTTTCTCTTGCTTTG 60.335 52.381 0.00 0.00 0.00 2.77
2381 2571 1.000171 GCTGGTTTCTCTTGCTTTGGG 60.000 52.381 0.00 0.00 0.00 4.12
2429 2619 0.824182 CACCCAACCCGCAACCTTTA 60.824 55.000 0.00 0.00 0.00 1.85
2444 2635 2.844348 ACCTTTAGTCCACATGTAGGGG 59.156 50.000 12.15 4.19 44.73 4.79
2454 2645 0.255604 CATGTAGGGGCATGTGGTCA 59.744 55.000 0.00 0.00 40.81 4.02
2455 2646 0.548031 ATGTAGGGGCATGTGGTCAG 59.452 55.000 0.00 0.00 0.00 3.51
2456 2647 1.224592 GTAGGGGCATGTGGTCAGG 59.775 63.158 0.00 0.00 0.00 3.86
2653 2980 2.239812 CGGCGTGATCGATGCATGT 61.240 57.895 2.46 0.00 38.48 3.21
2657 2984 1.262417 GCGTGATCGATGCATGTGATT 59.738 47.619 2.46 0.00 39.71 2.57
2699 3029 4.654389 ATCTATGCGTACCCTACTAGGT 57.346 45.455 1.25 0.00 44.37 3.08
2725 3055 0.820226 CTTGATCCTCGCTCCAGTCA 59.180 55.000 0.00 0.00 0.00 3.41
2771 3101 0.527113 TTCACCGATCGAACGCCTAA 59.473 50.000 18.66 0.20 0.00 2.69
2782 3112 4.077184 CGCCTAACCCCACGCTGA 62.077 66.667 0.00 0.00 0.00 4.26
2792 3122 2.260154 CCACGCTGACATGCCACAA 61.260 57.895 0.00 0.00 0.00 3.33
2842 3172 3.036429 GCCAGCTCTCAACCCCGAT 62.036 63.158 0.00 0.00 0.00 4.18
2891 3224 3.383026 CGCAAATCGGTTCAAGGTG 57.617 52.632 0.00 0.00 33.78 4.00
2935 3268 7.355778 CGCTCAAGATTGGAAGAAATATAACC 58.644 38.462 0.00 0.00 0.00 2.85
2959 3292 6.482973 CCAGAAGATTAGAGAGAATCAAAGGC 59.517 42.308 0.00 0.00 38.14 4.35
3073 5301 6.293190 GCAATATGGCCATTGACAATTGATTG 60.293 38.462 29.89 25.19 38.01 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.208599 TGGTAAACATCTTGGTTGATTTCCTC 59.791 38.462 0.00 0.00 0.00 3.71
8 9 6.074648 TGGTAAACATCTTGGTTGATTTCCT 58.925 36.000 0.00 0.00 0.00 3.36
9 10 6.208599 TCTGGTAAACATCTTGGTTGATTTCC 59.791 38.462 0.00 0.00 0.00 3.13
10 11 7.214467 TCTGGTAAACATCTTGGTTGATTTC 57.786 36.000 0.00 0.00 0.00 2.17
11 12 7.595819 TTCTGGTAAACATCTTGGTTGATTT 57.404 32.000 0.00 0.00 0.00 2.17
12 13 7.595819 TTTCTGGTAAACATCTTGGTTGATT 57.404 32.000 0.00 0.00 0.00 2.57
13 14 7.781324 ATTTCTGGTAAACATCTTGGTTGAT 57.219 32.000 0.00 0.00 0.00 2.57
14 15 7.069331 ACAATTTCTGGTAAACATCTTGGTTGA 59.931 33.333 0.00 0.00 0.00 3.18
15 16 7.209475 ACAATTTCTGGTAAACATCTTGGTTG 58.791 34.615 0.00 0.00 0.00 3.77
16 17 7.360113 ACAATTTCTGGTAAACATCTTGGTT 57.640 32.000 0.00 0.00 0.00 3.67
17 18 6.976934 ACAATTTCTGGTAAACATCTTGGT 57.023 33.333 0.00 0.00 0.00 3.67
18 19 7.489113 GCATACAATTTCTGGTAAACATCTTGG 59.511 37.037 0.00 0.00 0.00 3.61
19 20 8.246180 AGCATACAATTTCTGGTAAACATCTTG 58.754 33.333 0.00 0.00 0.00 3.02
20 21 8.353423 AGCATACAATTTCTGGTAAACATCTT 57.647 30.769 0.00 0.00 0.00 2.40
21 22 7.944729 AGCATACAATTTCTGGTAAACATCT 57.055 32.000 0.00 0.00 0.00 2.90
22 23 8.986477 AAAGCATACAATTTCTGGTAAACATC 57.014 30.769 0.00 0.00 0.00 3.06
23 24 8.806146 AGAAAGCATACAATTTCTGGTAAACAT 58.194 29.630 0.00 0.00 42.62 2.71
24 25 8.177119 AGAAAGCATACAATTTCTGGTAAACA 57.823 30.769 0.00 0.00 42.62 2.83
27 28 9.679661 TGATAGAAAGCATACAATTTCTGGTAA 57.320 29.630 9.77 0.00 43.69 2.85
28 29 9.330063 CTGATAGAAAGCATACAATTTCTGGTA 57.670 33.333 9.77 0.00 43.69 3.25
29 30 7.831193 ACTGATAGAAAGCATACAATTTCTGGT 59.169 33.333 9.77 0.36 43.69 4.00
30 31 8.218338 ACTGATAGAAAGCATACAATTTCTGG 57.782 34.615 9.77 2.15 43.69 3.86
31 32 9.713740 GAACTGATAGAAAGCATACAATTTCTG 57.286 33.333 9.77 0.00 43.69 3.02
32 33 8.607459 CGAACTGATAGAAAGCATACAATTTCT 58.393 33.333 5.60 5.60 45.33 2.52
33 34 7.852945 CCGAACTGATAGAAAGCATACAATTTC 59.147 37.037 0.00 0.00 35.99 2.17
34 35 7.679638 GCCGAACTGATAGAAAGCATACAATTT 60.680 37.037 0.00 0.00 0.00 1.82
35 36 6.238484 GCCGAACTGATAGAAAGCATACAATT 60.238 38.462 0.00 0.00 0.00 2.32
36 37 5.237344 GCCGAACTGATAGAAAGCATACAAT 59.763 40.000 0.00 0.00 0.00 2.71
37 38 4.570772 GCCGAACTGATAGAAAGCATACAA 59.429 41.667 0.00 0.00 0.00 2.41
38 39 4.119862 GCCGAACTGATAGAAAGCATACA 58.880 43.478 0.00 0.00 0.00 2.29
39 40 4.025647 GTGCCGAACTGATAGAAAGCATAC 60.026 45.833 0.00 0.00 0.00 2.39
40 41 4.119862 GTGCCGAACTGATAGAAAGCATA 58.880 43.478 0.00 0.00 0.00 3.14
41 42 2.939103 GTGCCGAACTGATAGAAAGCAT 59.061 45.455 0.00 0.00 0.00 3.79
42 43 2.289382 TGTGCCGAACTGATAGAAAGCA 60.289 45.455 0.00 0.00 0.00 3.91
43 44 2.094417 GTGTGCCGAACTGATAGAAAGC 59.906 50.000 0.00 0.00 0.00 3.51
44 45 2.673368 GGTGTGCCGAACTGATAGAAAG 59.327 50.000 0.00 0.00 0.00 2.62
45 46 2.037902 TGGTGTGCCGAACTGATAGAAA 59.962 45.455 0.00 0.00 37.67 2.52
46 47 1.621317 TGGTGTGCCGAACTGATAGAA 59.379 47.619 0.00 0.00 37.67 2.10
47 48 1.067142 GTGGTGTGCCGAACTGATAGA 60.067 52.381 0.00 0.00 37.67 1.98
48 49 1.337728 TGTGGTGTGCCGAACTGATAG 60.338 52.381 0.00 0.00 37.67 2.08
49 50 0.682292 TGTGGTGTGCCGAACTGATA 59.318 50.000 0.00 0.00 37.67 2.15
50 51 0.884704 GTGTGGTGTGCCGAACTGAT 60.885 55.000 0.00 0.00 37.67 2.90
51 52 1.522806 GTGTGGTGTGCCGAACTGA 60.523 57.895 0.00 0.00 37.67 3.41
52 53 1.817520 TGTGTGGTGTGCCGAACTG 60.818 57.895 0.00 0.00 37.67 3.16
53 54 1.817941 GTGTGTGGTGTGCCGAACT 60.818 57.895 0.00 0.00 37.67 3.01
54 55 1.649390 TTGTGTGTGGTGTGCCGAAC 61.649 55.000 0.00 0.00 37.67 3.95
55 56 0.749818 ATTGTGTGTGGTGTGCCGAA 60.750 50.000 0.00 0.00 37.67 4.30
56 57 1.153066 ATTGTGTGTGGTGTGCCGA 60.153 52.632 0.00 0.00 37.67 5.54
57 58 1.008652 CATTGTGTGTGGTGTGCCG 60.009 57.895 0.00 0.00 37.67 5.69
58 59 0.459489 AACATTGTGTGTGGTGTGCC 59.541 50.000 0.00 0.00 41.14 5.01
59 60 3.181491 ACTTAACATTGTGTGTGGTGTGC 60.181 43.478 0.00 0.00 41.14 4.57
60 61 4.630894 ACTTAACATTGTGTGTGGTGTG 57.369 40.909 0.00 0.00 41.14 3.82
61 62 5.295787 CAGTACTTAACATTGTGTGTGGTGT 59.704 40.000 0.00 0.00 41.14 4.16
62 63 5.295787 ACAGTACTTAACATTGTGTGTGGTG 59.704 40.000 0.00 0.00 41.14 4.17
63 64 5.295787 CACAGTACTTAACATTGTGTGTGGT 59.704 40.000 0.00 0.00 41.14 4.16
64 65 5.525745 TCACAGTACTTAACATTGTGTGTGG 59.474 40.000 8.47 0.00 41.14 4.17
65 66 6.597262 TCACAGTACTTAACATTGTGTGTG 57.403 37.500 8.47 3.82 41.14 3.82
66 67 5.236478 GCTCACAGTACTTAACATTGTGTGT 59.764 40.000 8.47 0.00 44.84 3.72
67 68 5.466728 AGCTCACAGTACTTAACATTGTGTG 59.533 40.000 8.47 7.59 39.93 3.82
68 69 5.611374 AGCTCACAGTACTTAACATTGTGT 58.389 37.500 8.47 0.00 39.93 3.72
69 70 6.545504 AAGCTCACAGTACTTAACATTGTG 57.454 37.500 0.00 0.00 40.25 3.33
70 71 6.017109 CCAAAGCTCACAGTACTTAACATTGT 60.017 38.462 0.00 0.00 0.00 2.71
71 72 6.373779 CCAAAGCTCACAGTACTTAACATTG 58.626 40.000 0.00 0.00 0.00 2.82
72 73 5.048713 GCCAAAGCTCACAGTACTTAACATT 60.049 40.000 0.00 0.00 35.50 2.71
73 74 4.455877 GCCAAAGCTCACAGTACTTAACAT 59.544 41.667 0.00 0.00 35.50 2.71
74 75 3.813166 GCCAAAGCTCACAGTACTTAACA 59.187 43.478 0.00 0.00 35.50 2.41
75 76 3.813166 TGCCAAAGCTCACAGTACTTAAC 59.187 43.478 0.00 0.00 40.80 2.01
76 77 4.079980 TGCCAAAGCTCACAGTACTTAA 57.920 40.909 0.00 0.00 40.80 1.85
77 78 3.762407 TGCCAAAGCTCACAGTACTTA 57.238 42.857 0.00 0.00 40.80 2.24
78 79 2.638480 TGCCAAAGCTCACAGTACTT 57.362 45.000 0.00 0.00 40.80 2.24
79 80 2.304180 AGATGCCAAAGCTCACAGTACT 59.696 45.455 0.00 0.00 40.80 2.73
80 81 2.704572 AGATGCCAAAGCTCACAGTAC 58.295 47.619 0.00 0.00 40.80 2.73
81 82 3.423539 AAGATGCCAAAGCTCACAGTA 57.576 42.857 0.00 0.00 40.80 2.74
82 83 2.283145 AAGATGCCAAAGCTCACAGT 57.717 45.000 0.00 0.00 40.80 3.55
83 84 2.352421 CCAAAGATGCCAAAGCTCACAG 60.352 50.000 0.00 0.00 40.80 3.66
84 85 1.614903 CCAAAGATGCCAAAGCTCACA 59.385 47.619 0.00 0.00 40.80 3.58
85 86 1.615392 ACCAAAGATGCCAAAGCTCAC 59.385 47.619 0.00 0.00 40.80 3.51
86 87 1.999648 ACCAAAGATGCCAAAGCTCA 58.000 45.000 0.00 0.00 40.80 4.26
87 88 2.353109 GGAACCAAAGATGCCAAAGCTC 60.353 50.000 0.00 0.00 40.80 4.09
88 89 1.620323 GGAACCAAAGATGCCAAAGCT 59.380 47.619 0.00 0.00 40.80 3.74
89 90 1.344114 TGGAACCAAAGATGCCAAAGC 59.656 47.619 0.00 0.00 40.48 3.51
90 91 2.629617 ACTGGAACCAAAGATGCCAAAG 59.370 45.455 0.00 0.00 0.00 2.77
91 92 2.676748 ACTGGAACCAAAGATGCCAAA 58.323 42.857 0.00 0.00 0.00 3.28
92 93 2.380064 ACTGGAACCAAAGATGCCAA 57.620 45.000 0.00 0.00 0.00 4.52
93 94 2.380064 AACTGGAACCAAAGATGCCA 57.620 45.000 0.00 0.00 0.00 4.92
94 95 3.572255 TGTAAACTGGAACCAAAGATGCC 59.428 43.478 0.00 0.00 0.00 4.40
95 96 4.846779 TGTAAACTGGAACCAAAGATGC 57.153 40.909 0.00 0.00 0.00 3.91
96 97 8.055279 ACATATGTAAACTGGAACCAAAGATG 57.945 34.615 6.56 0.00 0.00 2.90
97 98 9.396022 CTACATATGTAAACTGGAACCAAAGAT 57.604 33.333 16.17 0.00 0.00 2.40
98 99 8.380099 ACTACATATGTAAACTGGAACCAAAGA 58.620 33.333 16.17 0.00 0.00 2.52
99 100 8.561738 ACTACATATGTAAACTGGAACCAAAG 57.438 34.615 16.17 4.31 0.00 2.77
100 101 8.927675 AACTACATATGTAAACTGGAACCAAA 57.072 30.769 16.17 0.00 0.00 3.28
101 102 8.927675 AAACTACATATGTAAACTGGAACCAA 57.072 30.769 16.17 0.00 0.00 3.67
102 103 8.788806 CAAAACTACATATGTAAACTGGAACCA 58.211 33.333 16.17 0.00 0.00 3.67
103 104 9.005777 TCAAAACTACATATGTAAACTGGAACC 57.994 33.333 16.17 0.00 0.00 3.62
106 107 8.673711 GCATCAAAACTACATATGTAAACTGGA 58.326 33.333 16.17 11.46 0.00 3.86
107 108 8.458052 TGCATCAAAACTACATATGTAAACTGG 58.542 33.333 16.17 7.19 0.00 4.00
108 109 9.277565 GTGCATCAAAACTACATATGTAAACTG 57.722 33.333 16.17 10.96 0.00 3.16
109 110 9.008965 TGTGCATCAAAACTACATATGTAAACT 57.991 29.630 16.17 1.72 0.00 2.66
110 111 9.061610 GTGTGCATCAAAACTACATATGTAAAC 57.938 33.333 16.17 0.00 0.00 2.01
111 112 9.008965 AGTGTGCATCAAAACTACATATGTAAA 57.991 29.630 16.17 0.00 0.00 2.01
112 113 8.450180 CAGTGTGCATCAAAACTACATATGTAA 58.550 33.333 16.17 1.37 0.00 2.41
113 114 7.413988 GCAGTGTGCATCAAAACTACATATGTA 60.414 37.037 14.75 14.75 44.26 2.29
114 115 6.623549 GCAGTGTGCATCAAAACTACATATGT 60.624 38.462 13.93 13.93 44.26 2.29
115 116 5.740569 GCAGTGTGCATCAAAACTACATATG 59.259 40.000 0.00 0.00 44.26 1.78
116 117 5.883661 GCAGTGTGCATCAAAACTACATAT 58.116 37.500 0.00 0.00 44.26 1.78
117 118 5.295431 GCAGTGTGCATCAAAACTACATA 57.705 39.130 0.00 0.00 44.26 2.29
118 119 4.164822 GCAGTGTGCATCAAAACTACAT 57.835 40.909 0.00 0.00 44.26 2.29
119 120 3.624326 GCAGTGTGCATCAAAACTACA 57.376 42.857 0.00 0.00 44.26 2.74
132 133 0.321387 AGAGCACATCAGGCAGTGTG 60.321 55.000 11.12 11.12 46.42 3.82
133 134 0.399454 AAGAGCACATCAGGCAGTGT 59.601 50.000 0.00 0.00 38.02 3.55
134 135 1.531423 AAAGAGCACATCAGGCAGTG 58.469 50.000 0.00 0.00 38.74 3.66
135 136 2.283145 AAAAGAGCACATCAGGCAGT 57.717 45.000 0.00 0.00 0.00 4.40
170 171 9.764363 CACTGAAGTTATGCCTATTATCTAACA 57.236 33.333 0.00 0.00 0.00 2.41
171 172 9.765795 ACACTGAAGTTATGCCTATTATCTAAC 57.234 33.333 0.00 0.00 0.00 2.34
172 173 9.982651 GACACTGAAGTTATGCCTATTATCTAA 57.017 33.333 0.00 0.00 0.00 2.10
173 174 9.368416 AGACACTGAAGTTATGCCTATTATCTA 57.632 33.333 0.00 0.00 0.00 1.98
174 175 8.256356 AGACACTGAAGTTATGCCTATTATCT 57.744 34.615 0.00 0.00 0.00 1.98
175 176 8.364142 AGAGACACTGAAGTTATGCCTATTATC 58.636 37.037 0.00 0.00 0.00 1.75
176 177 8.256356 AGAGACACTGAAGTTATGCCTATTAT 57.744 34.615 0.00 0.00 0.00 1.28
177 178 7.201920 GGAGAGACACTGAAGTTATGCCTATTA 60.202 40.741 0.00 0.00 0.00 0.98
178 179 6.407525 GGAGAGACACTGAAGTTATGCCTATT 60.408 42.308 0.00 0.00 0.00 1.73
179 180 5.069781 GGAGAGACACTGAAGTTATGCCTAT 59.930 44.000 0.00 0.00 0.00 2.57
180 181 4.402793 GGAGAGACACTGAAGTTATGCCTA 59.597 45.833 0.00 0.00 0.00 3.93
181 182 3.196685 GGAGAGACACTGAAGTTATGCCT 59.803 47.826 0.00 0.00 0.00 4.75
182 183 3.196685 AGGAGAGACACTGAAGTTATGCC 59.803 47.826 0.00 0.00 0.00 4.40
183 184 4.180057 CAGGAGAGACACTGAAGTTATGC 58.820 47.826 0.00 0.00 36.86 3.14
184 185 5.047731 TGACAGGAGAGACACTGAAGTTATG 60.048 44.000 0.00 0.00 38.09 1.90
185 186 5.080337 TGACAGGAGAGACACTGAAGTTAT 58.920 41.667 0.00 0.00 38.09 1.89
186 187 4.470602 TGACAGGAGAGACACTGAAGTTA 58.529 43.478 0.00 0.00 38.09 2.24
187 188 3.300388 TGACAGGAGAGACACTGAAGTT 58.700 45.455 0.00 0.00 38.09 2.66
188 189 2.950781 TGACAGGAGAGACACTGAAGT 58.049 47.619 0.00 0.00 38.09 3.01
189 190 4.021632 TCATTGACAGGAGAGACACTGAAG 60.022 45.833 0.00 0.00 38.09 3.02
190 191 3.897505 TCATTGACAGGAGAGACACTGAA 59.102 43.478 0.00 0.00 38.09 3.02
191 192 3.500343 TCATTGACAGGAGAGACACTGA 58.500 45.455 0.00 0.00 38.09 3.41
192 193 3.949842 TCATTGACAGGAGAGACACTG 57.050 47.619 0.00 0.00 40.48 3.66
193 194 4.155709 TCTTCATTGACAGGAGAGACACT 58.844 43.478 0.00 0.00 0.00 3.55
194 195 4.493547 CTCTTCATTGACAGGAGAGACAC 58.506 47.826 7.13 0.00 0.00 3.67
195 196 3.056250 GCTCTTCATTGACAGGAGAGACA 60.056 47.826 14.50 0.00 0.00 3.41
196 197 3.520569 GCTCTTCATTGACAGGAGAGAC 58.479 50.000 14.50 5.16 0.00 3.36
197 198 2.499289 GGCTCTTCATTGACAGGAGAGA 59.501 50.000 14.50 1.41 0.00 3.10
198 199 2.500910 AGGCTCTTCATTGACAGGAGAG 59.499 50.000 8.22 8.22 0.00 3.20
199 200 2.544721 AGGCTCTTCATTGACAGGAGA 58.455 47.619 12.03 1.54 0.00 3.71
200 201 3.703556 TCTAGGCTCTTCATTGACAGGAG 59.296 47.826 0.00 6.27 0.00 3.69
201 202 3.713003 TCTAGGCTCTTCATTGACAGGA 58.287 45.455 0.00 0.00 0.00 3.86
202 203 4.100653 TCATCTAGGCTCTTCATTGACAGG 59.899 45.833 0.00 0.00 0.00 4.00
203 204 5.273674 TCATCTAGGCTCTTCATTGACAG 57.726 43.478 0.00 0.00 0.00 3.51
204 205 5.883685 ATCATCTAGGCTCTTCATTGACA 57.116 39.130 0.00 0.00 0.00 3.58
205 206 7.565323 AAAATCATCTAGGCTCTTCATTGAC 57.435 36.000 0.00 0.00 0.00 3.18
206 207 8.267183 TGTAAAATCATCTAGGCTCTTCATTGA 58.733 33.333 0.00 0.00 0.00 2.57
207 208 8.442632 TGTAAAATCATCTAGGCTCTTCATTG 57.557 34.615 0.00 0.00 0.00 2.82
208 209 7.228308 GCTGTAAAATCATCTAGGCTCTTCATT 59.772 37.037 0.00 0.00 0.00 2.57
209 210 6.709846 GCTGTAAAATCATCTAGGCTCTTCAT 59.290 38.462 0.00 0.00 0.00 2.57
210 211 6.051717 GCTGTAAAATCATCTAGGCTCTTCA 58.948 40.000 0.00 0.00 0.00 3.02
211 212 6.051717 TGCTGTAAAATCATCTAGGCTCTTC 58.948 40.000 0.00 0.00 0.00 2.87
212 213 5.994250 TGCTGTAAAATCATCTAGGCTCTT 58.006 37.500 0.00 0.00 0.00 2.85
213 214 5.620738 TGCTGTAAAATCATCTAGGCTCT 57.379 39.130 0.00 0.00 0.00 4.09
214 215 6.540189 TCTTTGCTGTAAAATCATCTAGGCTC 59.460 38.462 0.00 0.00 0.00 4.70
215 216 6.418101 TCTTTGCTGTAAAATCATCTAGGCT 58.582 36.000 0.00 0.00 0.00 4.58
216 217 6.683974 TCTTTGCTGTAAAATCATCTAGGC 57.316 37.500 0.00 0.00 0.00 3.93
217 218 9.553064 AGTATCTTTGCTGTAAAATCATCTAGG 57.447 33.333 0.00 0.00 0.00 3.02
223 224 9.383519 CCTCTTAGTATCTTTGCTGTAAAATCA 57.616 33.333 0.00 0.00 0.00 2.57
224 225 9.601217 TCCTCTTAGTATCTTTGCTGTAAAATC 57.399 33.333 0.00 0.00 0.00 2.17
229 230 9.815306 AGATATCCTCTTAGTATCTTTGCTGTA 57.185 33.333 0.00 0.00 32.70 2.74
230 231 8.719645 AGATATCCTCTTAGTATCTTTGCTGT 57.280 34.615 0.00 0.00 32.70 4.40
231 232 9.421806 CAAGATATCCTCTTAGTATCTTTGCTG 57.578 37.037 0.00 0.00 42.48 4.41
232 233 9.373450 TCAAGATATCCTCTTAGTATCTTTGCT 57.627 33.333 0.00 0.00 42.48 3.91
233 234 9.638239 CTCAAGATATCCTCTTAGTATCTTTGC 57.362 37.037 0.00 0.00 42.48 3.68
244 245 9.440761 ACCTACAATAACTCAAGATATCCTCTT 57.559 33.333 0.00 0.00 45.34 2.85
245 246 9.440761 AACCTACAATAACTCAAGATATCCTCT 57.559 33.333 0.00 0.00 34.96 3.69
275 276 9.407380 TGCCAAAACATATTACTCATAACAGAT 57.593 29.630 0.00 0.00 0.00 2.90
276 277 8.800370 TGCCAAAACATATTACTCATAACAGA 57.200 30.769 0.00 0.00 0.00 3.41
282 283 9.941325 TTCAAATTGCCAAAACATATTACTCAT 57.059 25.926 0.00 0.00 0.00 2.90
283 284 9.770097 TTTCAAATTGCCAAAACATATTACTCA 57.230 25.926 0.00 0.00 0.00 3.41
341 342 9.925268 CGTAAACAATGTTTAAGACTTAACAGT 57.075 29.630 21.47 6.05 35.17 3.55
347 348 7.646526 GCCTTTCGTAAACAATGTTTAAGACTT 59.353 33.333 25.91 2.32 0.00 3.01
348 349 7.012989 AGCCTTTCGTAAACAATGTTTAAGACT 59.987 33.333 25.91 18.98 0.00 3.24
349 350 7.136772 AGCCTTTCGTAAACAATGTTTAAGAC 58.863 34.615 25.91 17.55 0.00 3.01
350 351 7.266922 AGCCTTTCGTAAACAATGTTTAAGA 57.733 32.000 23.55 23.55 0.00 2.10
351 352 7.924103 AAGCCTTTCGTAAACAATGTTTAAG 57.076 32.000 18.79 19.71 0.00 1.85
352 353 9.798994 TTTAAGCCTTTCGTAAACAATGTTTAA 57.201 25.926 18.79 4.48 0.00 1.52
353 354 9.453325 CTTTAAGCCTTTCGTAAACAATGTTTA 57.547 29.630 13.93 13.93 0.00 2.01
354 355 7.977293 ACTTTAAGCCTTTCGTAAACAATGTTT 59.023 29.630 16.05 16.05 0.00 2.83
355 356 7.485810 ACTTTAAGCCTTTCGTAAACAATGTT 58.514 30.769 0.00 0.00 0.00 2.71
356 357 7.012989 AGACTTTAAGCCTTTCGTAAACAATGT 59.987 33.333 0.00 0.00 0.00 2.71
357 358 7.323656 CAGACTTTAAGCCTTTCGTAAACAATG 59.676 37.037 0.00 0.00 0.00 2.82
358 359 7.227910 TCAGACTTTAAGCCTTTCGTAAACAAT 59.772 33.333 0.00 0.00 0.00 2.71
359 360 6.539464 TCAGACTTTAAGCCTTTCGTAAACAA 59.461 34.615 0.00 0.00 0.00 2.83
360 361 6.050432 TCAGACTTTAAGCCTTTCGTAAACA 58.950 36.000 0.00 0.00 0.00 2.83
361 362 6.535274 TCAGACTTTAAGCCTTTCGTAAAC 57.465 37.500 0.00 0.00 0.00 2.01
362 363 7.556733 TTTCAGACTTTAAGCCTTTCGTAAA 57.443 32.000 0.00 0.00 0.00 2.01
363 364 7.556733 TTTTCAGACTTTAAGCCTTTCGTAA 57.443 32.000 0.00 0.00 0.00 3.18
364 365 7.739498 ATTTTCAGACTTTAAGCCTTTCGTA 57.261 32.000 0.00 0.00 0.00 3.43
365 366 6.635030 ATTTTCAGACTTTAAGCCTTTCGT 57.365 33.333 0.00 0.00 0.00 3.85
399 400 6.772716 ACAAACACACAAAGAAGATGGTATCT 59.227 34.615 0.00 0.00 42.61 1.98
400 401 6.970484 ACAAACACACAAAGAAGATGGTATC 58.030 36.000 0.00 0.00 0.00 2.24
401 402 6.959639 ACAAACACACAAAGAAGATGGTAT 57.040 33.333 0.00 0.00 0.00 2.73
402 403 6.767524 AACAAACACACAAAGAAGATGGTA 57.232 33.333 0.00 0.00 0.00 3.25
403 404 5.659440 AACAAACACACAAAGAAGATGGT 57.341 34.783 0.00 0.00 0.00 3.55
404 405 9.743057 TTAATAACAAACACACAAAGAAGATGG 57.257 29.630 0.00 0.00 0.00 3.51
411 412 9.848172 GCTGATTTTAATAACAAACACACAAAG 57.152 29.630 0.00 0.00 0.00 2.77
412 413 8.821894 GGCTGATTTTAATAACAAACACACAAA 58.178 29.630 0.00 0.00 0.00 2.83
413 414 7.981789 TGGCTGATTTTAATAACAAACACACAA 59.018 29.630 0.00 0.00 0.00 3.33
414 415 7.492524 TGGCTGATTTTAATAACAAACACACA 58.507 30.769 0.00 0.00 0.00 3.72
415 416 7.938563 TGGCTGATTTTAATAACAAACACAC 57.061 32.000 0.00 0.00 0.00 3.82
416 417 9.553064 AAATGGCTGATTTTAATAACAAACACA 57.447 25.926 0.00 0.00 29.22 3.72
418 419 9.770097 TGAAATGGCTGATTTTAATAACAAACA 57.230 25.926 0.00 0.00 34.18 2.83
427 428 9.651913 GGAGTAAATTGAAATGGCTGATTTTAA 57.348 29.630 0.00 0.00 34.18 1.52
428 429 8.811017 TGGAGTAAATTGAAATGGCTGATTTTA 58.189 29.630 0.00 0.00 34.18 1.52
429 430 7.678837 TGGAGTAAATTGAAATGGCTGATTTT 58.321 30.769 0.00 0.00 34.18 1.82
430 431 7.243604 TGGAGTAAATTGAAATGGCTGATTT 57.756 32.000 0.00 0.00 36.94 2.17
431 432 6.855763 TGGAGTAAATTGAAATGGCTGATT 57.144 33.333 0.00 0.00 0.00 2.57
432 433 6.608405 TCATGGAGTAAATTGAAATGGCTGAT 59.392 34.615 0.00 0.00 0.00 2.90
433 434 5.951148 TCATGGAGTAAATTGAAATGGCTGA 59.049 36.000 0.00 0.00 0.00 4.26
434 435 6.211587 TCATGGAGTAAATTGAAATGGCTG 57.788 37.500 0.00 0.00 0.00 4.85
435 436 6.855763 TTCATGGAGTAAATTGAAATGGCT 57.144 33.333 0.00 0.00 0.00 4.75
436 437 8.496707 AATTTCATGGAGTAAATTGAAATGGC 57.503 30.769 9.69 0.00 44.05 4.40
437 438 9.880157 AGAATTTCATGGAGTAAATTGAAATGG 57.120 29.630 9.69 0.00 44.05 3.16
447 448 9.904198 TCATGATACAAGAATTTCATGGAGTAA 57.096 29.630 13.10 0.00 43.52 2.24
449 450 8.991783 ATCATGATACAAGAATTTCATGGAGT 57.008 30.769 6.36 1.65 43.52 3.85
450 451 9.063615 TGATCATGATACAAGAATTTCATGGAG 57.936 33.333 8.54 0.00 43.52 3.86
451 452 8.983702 TGATCATGATACAAGAATTTCATGGA 57.016 30.769 8.54 0.00 43.52 3.41
452 453 9.626045 CATGATCATGATACAAGAATTTCATGG 57.374 33.333 28.37 0.00 43.52 3.66
458 459 9.546428 TCGTAACATGATCATGATACAAGAATT 57.454 29.630 35.67 23.01 43.18 2.17
459 460 9.201127 CTCGTAACATGATCATGATACAAGAAT 57.799 33.333 35.67 16.57 43.18 2.40
460 461 7.169813 GCTCGTAACATGATCATGATACAAGAA 59.830 37.037 35.67 23.94 43.18 2.52
461 462 6.642540 GCTCGTAACATGATCATGATACAAGA 59.357 38.462 35.67 28.36 43.18 3.02
462 463 6.128715 GGCTCGTAACATGATCATGATACAAG 60.129 42.308 35.67 31.68 43.18 3.16
463 464 5.696270 GGCTCGTAACATGATCATGATACAA 59.304 40.000 35.67 26.21 43.18 2.41
464 465 5.230182 GGCTCGTAACATGATCATGATACA 58.770 41.667 35.67 26.66 43.18 2.29
465 466 4.627467 GGGCTCGTAACATGATCATGATAC 59.373 45.833 36.37 33.54 41.08 2.24
466 467 4.618227 CGGGCTCGTAACATGATCATGATA 60.618 45.833 36.37 27.45 41.20 2.15
467 468 3.668447 GGGCTCGTAACATGATCATGAT 58.332 45.455 36.37 28.47 41.20 2.45
468 469 2.545742 CGGGCTCGTAACATGATCATGA 60.546 50.000 36.37 16.75 41.20 3.07
469 470 1.794701 CGGGCTCGTAACATGATCATG 59.205 52.381 29.95 29.95 44.15 3.07
470 471 2.154854 CGGGCTCGTAACATGATCAT 57.845 50.000 1.18 1.18 0.00 2.45
471 472 3.659850 CGGGCTCGTAACATGATCA 57.340 52.632 0.00 0.00 0.00 2.92
489 490 0.094730 GAATGTCCGTGCGTTGCTAC 59.905 55.000 0.00 0.00 0.00 3.58
490 491 0.037697 AGAATGTCCGTGCGTTGCTA 60.038 50.000 0.00 0.00 0.00 3.49
491 492 0.037697 TAGAATGTCCGTGCGTTGCT 60.038 50.000 0.00 0.00 0.00 3.91
492 493 0.094730 GTAGAATGTCCGTGCGTTGC 59.905 55.000 0.00 0.00 0.00 4.17
493 494 1.710013 AGTAGAATGTCCGTGCGTTG 58.290 50.000 0.00 0.00 0.00 4.10
494 495 2.490903 ACTAGTAGAATGTCCGTGCGTT 59.509 45.455 3.59 0.00 0.00 4.84
495 496 2.089980 ACTAGTAGAATGTCCGTGCGT 58.910 47.619 3.59 0.00 0.00 5.24
496 497 2.846039 ACTAGTAGAATGTCCGTGCG 57.154 50.000 3.59 0.00 0.00 5.34
497 498 6.098017 ACTTTTACTAGTAGAATGTCCGTGC 58.902 40.000 3.59 0.00 0.00 5.34
498 499 9.286946 CTTACTTTTACTAGTAGAATGTCCGTG 57.713 37.037 3.59 0.00 32.54 4.94
499 500 9.018582 ACTTACTTTTACTAGTAGAATGTCCGT 57.981 33.333 3.59 3.93 32.54 4.69
500 501 9.286946 CACTTACTTTTACTAGTAGAATGTCCG 57.713 37.037 3.59 0.00 32.54 4.79
539 540 2.415491 CGACAGAGGTATCGTTGCAGAA 60.415 50.000 0.00 0.00 33.63 3.02
540 541 1.132453 CGACAGAGGTATCGTTGCAGA 59.868 52.381 0.00 0.00 33.63 4.26
573 574 4.141937 TGCGACAGAGGTATTATTGCTTCT 60.142 41.667 0.00 0.00 0.00 2.85
574 575 4.119862 TGCGACAGAGGTATTATTGCTTC 58.880 43.478 0.00 0.00 0.00 3.86
575 576 4.137116 TGCGACAGAGGTATTATTGCTT 57.863 40.909 0.00 0.00 0.00 3.91
576 577 3.819564 TGCGACAGAGGTATTATTGCT 57.180 42.857 0.00 0.00 0.00 3.91
577 578 5.696724 ACTTATGCGACAGAGGTATTATTGC 59.303 40.000 0.00 0.00 0.00 3.56
578 579 7.653713 AGAACTTATGCGACAGAGGTATTATTG 59.346 37.037 0.00 0.00 0.00 1.90
579 580 7.653713 CAGAACTTATGCGACAGAGGTATTATT 59.346 37.037 0.00 0.00 0.00 1.40
587 589 2.610433 TGCAGAACTTATGCGACAGAG 58.390 47.619 4.02 0.00 46.87 3.35
675 687 1.227350 CTCGCGAGCCATTGGATGA 60.227 57.895 25.07 0.00 0.00 2.92
716 728 0.378962 ACAAAAAGCAACGCTACGCA 59.621 45.000 0.00 0.00 38.25 5.24
1065 1113 4.521062 CCCGCTCCCAGCTTCTCG 62.521 72.222 0.00 0.00 39.60 4.04
1231 1279 3.133014 CACGATCGAGGGGATGCT 58.867 61.111 24.34 0.00 34.82 3.79
1369 1420 2.100603 CTCGTCCTCGGAGAACGC 59.899 66.667 12.20 0.00 43.86 4.84
2288 2477 1.144057 CGGAGCGCTAGGATGGTTT 59.856 57.895 11.50 0.00 0.00 3.27
2305 2495 4.379243 ACGAAGCACCAGGAGGCG 62.379 66.667 0.00 0.00 39.06 5.52
2307 2497 2.232298 GAGGACGAAGCACCAGGAGG 62.232 65.000 0.00 0.00 42.21 4.30
2329 2519 2.890474 CGGCCAAATCTCCCGTCG 60.890 66.667 2.24 0.00 37.36 5.12
2331 2521 4.796495 GCCGGCCAAATCTCCCGT 62.796 66.667 18.11 0.00 40.38 5.28
2332 2522 3.995506 AAGCCGGCCAAATCTCCCG 62.996 63.158 26.15 0.00 41.60 5.14
2333 2523 0.395173 TAAAGCCGGCCAAATCTCCC 60.395 55.000 26.15 0.00 0.00 4.30
2338 2528 2.939198 GCCAAATTAAAGCCGGCCAAAT 60.939 45.455 26.15 17.47 36.73 2.32
2351 2541 1.816224 GAGAAACCAGCCGCCAAATTA 59.184 47.619 0.00 0.00 0.00 1.40
2368 2558 2.672996 GCGCCCCAAAGCAAGAGA 60.673 61.111 0.00 0.00 0.00 3.10
2390 2580 3.892581 GCATAGTTGCCCGCTGCC 61.893 66.667 0.00 0.00 43.38 4.85
2429 2619 0.548031 CATGCCCCTACATGTGGACT 59.452 55.000 11.31 0.00 42.05 3.85
2607 2929 1.070175 ACTTTCACGTGCGTAATGTGC 60.070 47.619 11.67 0.00 44.25 4.57
2653 2980 3.426787 TTTTTAGGGGTCGCAGAATCA 57.573 42.857 0.00 0.00 39.69 2.57
2682 3012 3.494332 CCTAACCTAGTAGGGTACGCAT 58.506 50.000 20.54 0.33 40.58 4.73
2699 3029 1.227263 GCGAGGATCAAGCGCCTAA 60.227 57.895 2.29 0.00 44.55 2.69
2771 3101 4.722700 GGCATGTCAGCGTGGGGT 62.723 66.667 0.00 0.00 34.64 4.95
2782 3112 0.185901 AACAGGGAGTTGTGGCATGT 59.814 50.000 0.00 0.00 39.49 3.21
2792 3122 1.128188 GGGTGTCCTCAACAGGGAGT 61.128 60.000 0.00 0.00 40.80 3.85
2803 3133 0.706433 AATCTGCAATGGGGTGTCCT 59.294 50.000 0.00 0.00 36.20 3.85
2842 3172 1.006086 CGCGATGCTGATGTGGTTTA 58.994 50.000 0.00 0.00 0.00 2.01
2891 3224 2.356069 GCGGGAAGGATCAAAGACAATC 59.644 50.000 0.00 0.00 0.00 2.67
2935 3268 7.046652 TGCCTTTGATTCTCTCTAATCTTCTG 58.953 38.462 0.00 0.00 36.90 3.02
2959 3292 2.817844 AGTGCATATGCTATGTGCCATG 59.182 45.455 27.13 0.00 45.45 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.