Multiple sequence alignment - TraesCS7B01G216400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G216400 | chr7B | 100.000 | 2309 | 0 | 0 | 1 | 2309 | 399259369 | 399261677 | 0.000000e+00 | 4265.0 |
1 | TraesCS7B01G216400 | chr7B | 81.221 | 213 | 32 | 7 | 1061 | 1267 | 396044738 | 396044948 | 5.100000e-37 | 165.0 |
2 | TraesCS7B01G216400 | chr7B | 90.698 | 86 | 7 | 1 | 1737 | 1822 | 702879295 | 702879211 | 1.870000e-21 | 113.0 |
3 | TraesCS7B01G216400 | chr7D | 95.868 | 847 | 28 | 3 | 614 | 1453 | 396125254 | 396126100 | 0.000000e+00 | 1363.0 |
4 | TraesCS7B01G216400 | chr7D | 92.348 | 379 | 19 | 6 | 2 | 373 | 396124668 | 396125043 | 4.370000e-147 | 531.0 |
5 | TraesCS7B01G216400 | chr7D | 90.535 | 243 | 21 | 2 | 1450 | 1691 | 396126202 | 396126443 | 1.030000e-83 | 320.0 |
6 | TraesCS7B01G216400 | chr7D | 86.182 | 275 | 29 | 8 | 2038 | 2309 | 396126858 | 396127126 | 2.900000e-74 | 289.0 |
7 | TraesCS7B01G216400 | chr7D | 92.105 | 114 | 9 | 0 | 1814 | 1927 | 396126631 | 396126744 | 6.600000e-36 | 161.0 |
8 | TraesCS7B01G216400 | chr7D | 77.941 | 272 | 41 | 13 | 1001 | 1267 | 396113405 | 396113662 | 3.970000e-33 | 152.0 |
9 | TraesCS7B01G216400 | chr7A | 94.731 | 873 | 39 | 6 | 605 | 1476 | 449703931 | 449704797 | 0.000000e+00 | 1351.0 |
10 | TraesCS7B01G216400 | chr7A | 94.408 | 304 | 13 | 3 | 1 | 303 | 449703626 | 449703926 | 4.490000e-127 | 464.0 |
11 | TraesCS7B01G216400 | chr7A | 79.717 | 212 | 35 | 8 | 1061 | 1266 | 449641201 | 449641410 | 1.850000e-31 | 147.0 |
12 | TraesCS7B01G216400 | chr7A | 93.506 | 77 | 4 | 1 | 1737 | 1813 | 135517726 | 135517801 | 1.870000e-21 | 113.0 |
13 | TraesCS7B01G216400 | chr3B | 94.805 | 77 | 3 | 1 | 1737 | 1813 | 227028715 | 227028640 | 4.030000e-23 | 119.0 |
14 | TraesCS7B01G216400 | chr1D | 94.805 | 77 | 3 | 1 | 1737 | 1813 | 6523333 | 6523408 | 4.030000e-23 | 119.0 |
15 | TraesCS7B01G216400 | chr1D | 92.208 | 77 | 5 | 1 | 1737 | 1813 | 335345705 | 335345630 | 8.720000e-20 | 108.0 |
16 | TraesCS7B01G216400 | chr4D | 93.506 | 77 | 4 | 1 | 1737 | 1813 | 501663676 | 501663751 | 1.870000e-21 | 113.0 |
17 | TraesCS7B01G216400 | chr4D | 90.588 | 85 | 7 | 1 | 1731 | 1815 | 448165023 | 448165106 | 6.740000e-21 | 111.0 |
18 | TraesCS7B01G216400 | chr6B | 92.308 | 78 | 5 | 1 | 1737 | 1814 | 3697093 | 3697017 | 2.430000e-20 | 110.0 |
19 | TraesCS7B01G216400 | chr6D | 85.714 | 98 | 8 | 5 | 1737 | 1829 | 399654280 | 399654184 | 5.250000e-17 | 99.0 |
20 | TraesCS7B01G216400 | chrUn | 90.000 | 70 | 4 | 3 | 480 | 546 | 300922152 | 300922083 | 1.140000e-13 | 87.9 |
21 | TraesCS7B01G216400 | chr2B | 90.000 | 70 | 4 | 3 | 480 | 546 | 81551030 | 81550961 | 1.140000e-13 | 87.9 |
22 | TraesCS7B01G216400 | chr2B | 91.803 | 61 | 4 | 1 | 487 | 546 | 797992259 | 797992199 | 1.470000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G216400 | chr7B | 399259369 | 399261677 | 2308 | False | 4265.0 | 4265 | 100.0000 | 1 | 2309 | 1 | chr7B.!!$F2 | 2308 |
1 | TraesCS7B01G216400 | chr7D | 396124668 | 396127126 | 2458 | False | 532.8 | 1363 | 91.4076 | 2 | 2309 | 5 | chr7D.!!$F2 | 2307 |
2 | TraesCS7B01G216400 | chr7A | 449703626 | 449704797 | 1171 | False | 907.5 | 1351 | 94.5695 | 1 | 1476 | 2 | chr7A.!!$F3 | 1475 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
313 | 321 | 0.098728 | GTCGGGATGGCGATGTTTTG | 59.901 | 55.0 | 0.0 | 0.0 | 0.0 | 2.44 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2036 | 2381 | 0.035439 | CGCACCTAACAATGGGAGGT | 60.035 | 55.0 | 2.89 | 2.89 | 44.65 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
192 | 199 | 1.568612 | ATTGTCCAGTTGTCGCTGCG | 61.569 | 55.000 | 17.25 | 17.25 | 35.28 | 5.18 |
226 | 233 | 1.165907 | CCGTGCAAGTTGGAGCAAGA | 61.166 | 55.000 | 4.75 | 0.00 | 43.20 | 3.02 |
271 | 279 | 0.108329 | CGACAGCCACCGGTTCTTAT | 60.108 | 55.000 | 2.97 | 0.00 | 0.00 | 1.73 |
272 | 280 | 1.135527 | CGACAGCCACCGGTTCTTATA | 59.864 | 52.381 | 2.97 | 0.00 | 0.00 | 0.98 |
298 | 306 | 1.597663 | GAAACGGGCTATTCATGTCGG | 59.402 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
313 | 321 | 0.098728 | GTCGGGATGGCGATGTTTTG | 59.901 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
328 | 336 | 5.718649 | ATGTTTTGTTCATCGGATAGACG | 57.281 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
340 | 348 | 3.616821 | TCGGATAGACGTTCAGCAAATTG | 59.383 | 43.478 | 0.00 | 0.00 | 34.94 | 2.32 |
346 | 354 | 1.344114 | ACGTTCAGCAAATTGCCCAAT | 59.656 | 42.857 | 15.04 | 0.00 | 46.52 | 3.16 |
356 | 364 | 5.591067 | AGCAAATTGCCCAATAATGAAATGG | 59.409 | 36.000 | 15.04 | 0.00 | 46.52 | 3.16 |
357 | 365 | 5.357596 | GCAAATTGCCCAATAATGAAATGGT | 59.642 | 36.000 | 6.72 | 0.00 | 37.42 | 3.55 |
363 | 371 | 7.053316 | TGCCCAATAATGAAATGGTCTATTG | 57.947 | 36.000 | 0.00 | 0.00 | 32.13 | 1.90 |
369 | 377 | 9.752961 | CAATAATGAAATGGTCTATTGCATCAA | 57.247 | 29.630 | 3.00 | 0.00 | 43.02 | 2.57 |
386 | 416 | 7.712264 | TGCATCAAAAACTACATTGAAAAGG | 57.288 | 32.000 | 0.00 | 0.00 | 38.88 | 3.11 |
387 | 417 | 7.271511 | TGCATCAAAAACTACATTGAAAAGGT | 58.728 | 30.769 | 0.00 | 0.00 | 45.91 | 3.50 |
388 | 418 | 7.768120 | TGCATCAAAAACTACATTGAAAAGGTT | 59.232 | 29.630 | 0.00 | 0.00 | 37.74 | 3.50 |
389 | 419 | 9.255304 | GCATCAAAAACTACATTGAAAAGGTTA | 57.745 | 29.630 | 0.00 | 0.00 | 37.74 | 2.85 |
408 | 438 | 8.747538 | AAGGTTACTTTTAGTTCACTGATTGT | 57.252 | 30.769 | 0.00 | 0.00 | 31.39 | 2.71 |
409 | 439 | 8.747538 | AGGTTACTTTTAGTTCACTGATTGTT | 57.252 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
410 | 440 | 9.185680 | AGGTTACTTTTAGTTCACTGATTGTTT | 57.814 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
414 | 444 | 8.514330 | ACTTTTAGTTCACTGATTGTTTACCA | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 3.25 |
415 | 445 | 9.131791 | ACTTTTAGTTCACTGATTGTTTACCAT | 57.868 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
416 | 446 | 9.398170 | CTTTTAGTTCACTGATTGTTTACCATG | 57.602 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
417 | 447 | 8.684386 | TTTAGTTCACTGATTGTTTACCATGA | 57.316 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
418 | 448 | 8.862325 | TTAGTTCACTGATTGTTTACCATGAT | 57.138 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
420 | 450 | 6.716628 | AGTTCACTGATTGTTTACCATGATGT | 59.283 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
421 | 451 | 7.231317 | AGTTCACTGATTGTTTACCATGATGTT | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
422 | 452 | 7.523293 | TCACTGATTGTTTACCATGATGTTT | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
423 | 453 | 7.592938 | TCACTGATTGTTTACCATGATGTTTC | 58.407 | 34.615 | 0.00 | 0.00 | 0.00 | 2.78 |
425 | 455 | 6.721208 | ACTGATTGTTTACCATGATGTTTCCT | 59.279 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
426 | 456 | 7.888021 | ACTGATTGTTTACCATGATGTTTCCTA | 59.112 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
427 | 457 | 8.642935 | TGATTGTTTACCATGATGTTTCCTAA | 57.357 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
428 | 458 | 8.739039 | TGATTGTTTACCATGATGTTTCCTAAG | 58.261 | 33.333 | 0.00 | 0.00 | 0.00 | 2.18 |
429 | 459 | 8.877864 | ATTGTTTACCATGATGTTTCCTAAGA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
431 | 461 | 7.227873 | TGTTTACCATGATGTTTCCTAAGACA | 58.772 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
432 | 462 | 7.390440 | TGTTTACCATGATGTTTCCTAAGACAG | 59.610 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
435 | 465 | 4.264253 | CATGATGTTTCCTAAGACAGGCA | 58.736 | 43.478 | 0.00 | 0.00 | 45.10 | 4.75 |
436 | 466 | 4.574674 | TGATGTTTCCTAAGACAGGCAT | 57.425 | 40.909 | 0.00 | 0.00 | 45.10 | 4.40 |
437 | 467 | 4.922206 | TGATGTTTCCTAAGACAGGCATT | 58.078 | 39.130 | 0.00 | 0.00 | 45.10 | 3.56 |
438 | 468 | 4.701651 | TGATGTTTCCTAAGACAGGCATTG | 59.298 | 41.667 | 0.00 | 0.00 | 45.10 | 2.82 |
439 | 469 | 3.420893 | TGTTTCCTAAGACAGGCATTGG | 58.579 | 45.455 | 0.00 | 0.00 | 45.10 | 3.16 |
440 | 470 | 3.073798 | TGTTTCCTAAGACAGGCATTGGA | 59.926 | 43.478 | 0.00 | 0.00 | 45.10 | 3.53 |
441 | 471 | 4.263905 | TGTTTCCTAAGACAGGCATTGGAT | 60.264 | 41.667 | 0.00 | 0.00 | 45.10 | 3.41 |
442 | 472 | 5.045213 | TGTTTCCTAAGACAGGCATTGGATA | 60.045 | 40.000 | 0.00 | 0.00 | 45.10 | 2.59 |
443 | 473 | 4.963318 | TCCTAAGACAGGCATTGGATAG | 57.037 | 45.455 | 0.00 | 0.00 | 45.10 | 2.08 |
444 | 474 | 3.071602 | TCCTAAGACAGGCATTGGATAGC | 59.928 | 47.826 | 0.00 | 0.00 | 45.10 | 2.97 |
445 | 475 | 3.072184 | CCTAAGACAGGCATTGGATAGCT | 59.928 | 47.826 | 0.00 | 0.00 | 37.70 | 3.32 |
446 | 476 | 3.659183 | AAGACAGGCATTGGATAGCTT | 57.341 | 42.857 | 0.00 | 0.00 | 0.00 | 3.74 |
448 | 478 | 4.348863 | AGACAGGCATTGGATAGCTTAG | 57.651 | 45.455 | 0.00 | 0.00 | 0.00 | 2.18 |
449 | 479 | 3.713764 | AGACAGGCATTGGATAGCTTAGT | 59.286 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
450 | 480 | 4.164988 | AGACAGGCATTGGATAGCTTAGTT | 59.835 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
451 | 481 | 5.366768 | AGACAGGCATTGGATAGCTTAGTTA | 59.633 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
525 | 555 | 8.706492 | TGAAAATATACCGTAGAACAATCGTT | 57.294 | 30.769 | 0.00 | 0.00 | 38.33 | 3.85 |
538 | 568 | 3.839293 | ACAATCGTTCTACAGTCTCTGC | 58.161 | 45.455 | 0.00 | 0.00 | 34.37 | 4.26 |
539 | 569 | 3.182967 | CAATCGTTCTACAGTCTCTGCC | 58.817 | 50.000 | 0.00 | 0.00 | 34.37 | 4.85 |
540 | 570 | 2.201921 | TCGTTCTACAGTCTCTGCCT | 57.798 | 50.000 | 0.00 | 0.00 | 34.37 | 4.75 |
541 | 571 | 2.085320 | TCGTTCTACAGTCTCTGCCTC | 58.915 | 52.381 | 0.00 | 0.00 | 34.37 | 4.70 |
542 | 572 | 1.813178 | CGTTCTACAGTCTCTGCCTCA | 59.187 | 52.381 | 0.00 | 0.00 | 34.37 | 3.86 |
543 | 573 | 2.229062 | CGTTCTACAGTCTCTGCCTCAA | 59.771 | 50.000 | 0.00 | 0.00 | 34.37 | 3.02 |
544 | 574 | 3.305403 | CGTTCTACAGTCTCTGCCTCAAA | 60.305 | 47.826 | 0.00 | 0.00 | 34.37 | 2.69 |
545 | 575 | 4.632153 | GTTCTACAGTCTCTGCCTCAAAA | 58.368 | 43.478 | 0.00 | 0.00 | 34.37 | 2.44 |
547 | 577 | 4.152647 | TCTACAGTCTCTGCCTCAAAAGA | 58.847 | 43.478 | 0.00 | 0.00 | 34.37 | 2.52 |
548 | 578 | 3.845781 | ACAGTCTCTGCCTCAAAAGAA | 57.154 | 42.857 | 0.00 | 0.00 | 34.37 | 2.52 |
549 | 579 | 4.156455 | ACAGTCTCTGCCTCAAAAGAAA | 57.844 | 40.909 | 0.00 | 0.00 | 34.37 | 2.52 |
551 | 581 | 4.141620 | ACAGTCTCTGCCTCAAAAGAAAGA | 60.142 | 41.667 | 0.00 | 0.00 | 34.37 | 2.52 |
554 | 584 | 5.059833 | GTCTCTGCCTCAAAAGAAAGAAGA | 58.940 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
555 | 585 | 5.704978 | GTCTCTGCCTCAAAAGAAAGAAGAT | 59.295 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
556 | 586 | 5.936956 | TCTCTGCCTCAAAAGAAAGAAGATC | 59.063 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
557 | 587 | 5.006386 | TCTGCCTCAAAAGAAAGAAGATCC | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
560 | 590 | 5.474876 | TGCCTCAAAAGAAAGAAGATCCTTC | 59.525 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
561 | 591 | 5.474876 | GCCTCAAAAGAAAGAAGATCCTTCA | 59.525 | 40.000 | 9.10 | 0.00 | 0.00 | 3.02 |
562 | 592 | 6.569418 | GCCTCAAAAGAAAGAAGATCCTTCAC | 60.569 | 42.308 | 9.10 | 1.44 | 0.00 | 3.18 |
563 | 593 | 6.714356 | CCTCAAAAGAAAGAAGATCCTTCACT | 59.286 | 38.462 | 9.10 | 3.36 | 0.00 | 3.41 |
564 | 594 | 7.880195 | CCTCAAAAGAAAGAAGATCCTTCACTA | 59.120 | 37.037 | 9.10 | 0.00 | 0.00 | 2.74 |
565 | 595 | 9.277783 | CTCAAAAGAAAGAAGATCCTTCACTAA | 57.722 | 33.333 | 9.10 | 0.00 | 0.00 | 2.24 |
566 | 596 | 9.277783 | TCAAAAGAAAGAAGATCCTTCACTAAG | 57.722 | 33.333 | 9.10 | 0.00 | 0.00 | 2.18 |
567 | 597 | 7.680442 | AAAGAAAGAAGATCCTTCACTAAGC | 57.320 | 36.000 | 9.10 | 0.00 | 0.00 | 3.09 |
568 | 598 | 6.619329 | AGAAAGAAGATCCTTCACTAAGCT | 57.381 | 37.500 | 9.10 | 0.00 | 0.00 | 3.74 |
569 | 599 | 7.014988 | AGAAAGAAGATCCTTCACTAAGCTT | 57.985 | 36.000 | 3.48 | 3.48 | 0.00 | 3.74 |
570 | 600 | 8.140112 | AGAAAGAAGATCCTTCACTAAGCTTA | 57.860 | 34.615 | 5.94 | 5.94 | 0.00 | 3.09 |
571 | 601 | 8.038351 | AGAAAGAAGATCCTTCACTAAGCTTAC | 58.962 | 37.037 | 0.86 | 0.00 | 0.00 | 2.34 |
572 | 602 | 6.228616 | AGAAGATCCTTCACTAAGCTTACC | 57.771 | 41.667 | 0.86 | 0.00 | 0.00 | 2.85 |
573 | 603 | 5.961421 | AGAAGATCCTTCACTAAGCTTACCT | 59.039 | 40.000 | 0.86 | 0.00 | 0.00 | 3.08 |
574 | 604 | 5.606348 | AGATCCTTCACTAAGCTTACCTG | 57.394 | 43.478 | 0.86 | 1.17 | 0.00 | 4.00 |
575 | 605 | 5.026790 | AGATCCTTCACTAAGCTTACCTGT | 58.973 | 41.667 | 0.86 | 0.00 | 0.00 | 4.00 |
576 | 606 | 5.485708 | AGATCCTTCACTAAGCTTACCTGTT | 59.514 | 40.000 | 0.86 | 0.00 | 0.00 | 3.16 |
577 | 607 | 5.562298 | TCCTTCACTAAGCTTACCTGTTT | 57.438 | 39.130 | 0.86 | 0.00 | 0.00 | 2.83 |
578 | 608 | 6.675413 | TCCTTCACTAAGCTTACCTGTTTA | 57.325 | 37.500 | 0.86 | 0.00 | 0.00 | 2.01 |
579 | 609 | 6.461640 | TCCTTCACTAAGCTTACCTGTTTAC | 58.538 | 40.000 | 0.86 | 0.00 | 0.00 | 2.01 |
580 | 610 | 6.269307 | TCCTTCACTAAGCTTACCTGTTTACT | 59.731 | 38.462 | 0.86 | 0.00 | 0.00 | 2.24 |
581 | 611 | 6.369065 | CCTTCACTAAGCTTACCTGTTTACTG | 59.631 | 42.308 | 0.86 | 0.00 | 0.00 | 2.74 |
582 | 612 | 6.659745 | TCACTAAGCTTACCTGTTTACTGA | 57.340 | 37.500 | 0.86 | 0.00 | 0.00 | 3.41 |
583 | 613 | 7.058023 | TCACTAAGCTTACCTGTTTACTGAA | 57.942 | 36.000 | 0.86 | 0.00 | 0.00 | 3.02 |
584 | 614 | 7.152645 | TCACTAAGCTTACCTGTTTACTGAAG | 58.847 | 38.462 | 0.86 | 0.00 | 0.00 | 3.02 |
585 | 615 | 5.932883 | ACTAAGCTTACCTGTTTACTGAAGC | 59.067 | 40.000 | 0.86 | 0.00 | 39.63 | 3.86 |
586 | 616 | 4.351874 | AGCTTACCTGTTTACTGAAGCA | 57.648 | 40.909 | 7.13 | 0.00 | 41.34 | 3.91 |
587 | 617 | 4.065789 | AGCTTACCTGTTTACTGAAGCAC | 58.934 | 43.478 | 7.13 | 0.00 | 41.34 | 4.40 |
588 | 618 | 4.065789 | GCTTACCTGTTTACTGAAGCACT | 58.934 | 43.478 | 0.00 | 0.00 | 39.24 | 4.40 |
589 | 619 | 5.011738 | AGCTTACCTGTTTACTGAAGCACTA | 59.988 | 40.000 | 7.13 | 0.00 | 41.34 | 2.74 |
590 | 620 | 5.699458 | GCTTACCTGTTTACTGAAGCACTAA | 59.301 | 40.000 | 0.00 | 0.00 | 39.24 | 2.24 |
591 | 621 | 6.347483 | GCTTACCTGTTTACTGAAGCACTAAC | 60.347 | 42.308 | 0.00 | 0.00 | 39.24 | 2.34 |
592 | 622 | 5.291905 | ACCTGTTTACTGAAGCACTAACT | 57.708 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
593 | 623 | 5.681639 | ACCTGTTTACTGAAGCACTAACTT | 58.318 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
594 | 624 | 6.823497 | ACCTGTTTACTGAAGCACTAACTTA | 58.177 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
595 | 625 | 6.704937 | ACCTGTTTACTGAAGCACTAACTTAC | 59.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
596 | 626 | 6.929606 | CCTGTTTACTGAAGCACTAACTTACT | 59.070 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
597 | 627 | 7.441458 | CCTGTTTACTGAAGCACTAACTTACTT | 59.559 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
598 | 628 | 8.361592 | TGTTTACTGAAGCACTAACTTACTTC | 57.638 | 34.615 | 0.00 | 0.00 | 39.16 | 3.01 |
599 | 629 | 8.202137 | TGTTTACTGAAGCACTAACTTACTTCT | 58.798 | 33.333 | 0.00 | 0.00 | 39.39 | 2.85 |
600 | 630 | 9.043079 | GTTTACTGAAGCACTAACTTACTTCTT | 57.957 | 33.333 | 0.00 | 0.00 | 39.39 | 2.52 |
601 | 631 | 8.813643 | TTACTGAAGCACTAACTTACTTCTTC | 57.186 | 34.615 | 0.00 | 0.00 | 39.39 | 2.87 |
602 | 632 | 7.056844 | ACTGAAGCACTAACTTACTTCTTCT | 57.943 | 36.000 | 0.00 | 0.00 | 39.39 | 2.85 |
603 | 633 | 7.501844 | ACTGAAGCACTAACTTACTTCTTCTT | 58.498 | 34.615 | 0.00 | 0.00 | 39.39 | 2.52 |
606 | 636 | 7.868415 | TGAAGCACTAACTTACTTCTTCTTCTC | 59.132 | 37.037 | 0.00 | 0.00 | 39.39 | 2.87 |
631 | 661 | 8.935844 | TCACATGTATAAACTCAACAGCTAAAG | 58.064 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
786 | 816 | 1.619827 | CATGTGGCAATGTTCCTTGGT | 59.380 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
801 | 831 | 7.972301 | TGTTCCTTGGTCAAATTAATTCCATT | 58.028 | 30.769 | 0.10 | 0.00 | 0.00 | 3.16 |
803 | 833 | 9.283768 | GTTCCTTGGTCAAATTAATTCCATTTT | 57.716 | 29.630 | 0.10 | 0.00 | 0.00 | 1.82 |
830 | 860 | 3.350912 | GTTTAACAACTGACAGCACACG | 58.649 | 45.455 | 1.25 | 0.00 | 0.00 | 4.49 |
832 | 862 | 1.095228 | AACAACTGACAGCACACGGG | 61.095 | 55.000 | 1.25 | 0.00 | 0.00 | 5.28 |
893 | 924 | 2.437359 | GAGCTCCCGCAACATGCT | 60.437 | 61.111 | 0.87 | 0.00 | 42.25 | 3.79 |
933 | 967 | 4.427096 | ACTACTGATGAACTCACTCACG | 57.573 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
1149 | 1186 | 3.480225 | GATCCCGACGGCGTACCTG | 62.480 | 68.421 | 14.74 | 3.00 | 35.23 | 4.00 |
1266 | 1303 | 1.081376 | CTTCGTTGAGCTCGTCGGT | 60.081 | 57.895 | 23.17 | 0.00 | 0.00 | 4.69 |
1307 | 1344 | 4.409218 | GTCGTCGTGGCGGCACTA | 62.409 | 66.667 | 35.12 | 25.05 | 36.38 | 2.74 |
1354 | 1391 | 7.148407 | TGCGAGGAGATCTTGTTAATTCTTTTC | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1365 | 1402 | 7.780008 | TGTTAATTCTTTTCTCAGTTCGTGA | 57.220 | 32.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1395 | 1432 | 4.212214 | GCAGTATGTACATAGCAGCTTTCC | 59.788 | 45.833 | 15.93 | 1.44 | 39.31 | 3.13 |
1493 | 1635 | 1.504359 | GTGACGGTCCATGTTTTCGA | 58.496 | 50.000 | 5.55 | 0.00 | 0.00 | 3.71 |
1535 | 1677 | 3.181774 | CGGTGCGAATCTATAAAGGAACG | 59.818 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
1552 | 1694 | 3.859386 | GGAACGCATGGATTTCAAATGAC | 59.141 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1566 | 1708 | 5.720371 | TCAAATGACATTCGGGTTGAAAT | 57.280 | 34.783 | 0.05 | 0.00 | 40.71 | 2.17 |
1567 | 1709 | 6.095432 | TCAAATGACATTCGGGTTGAAATT | 57.905 | 33.333 | 0.05 | 0.00 | 40.71 | 1.82 |
1568 | 1710 | 6.520272 | TCAAATGACATTCGGGTTGAAATTT | 58.480 | 32.000 | 0.05 | 0.00 | 40.71 | 1.82 |
1570 | 1712 | 7.497249 | TCAAATGACATTCGGGTTGAAATTTTT | 59.503 | 29.630 | 0.05 | 0.00 | 40.71 | 1.94 |
1592 | 1734 | 5.637006 | TTATCGTGGGGAACAAATGAAAG | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
1598 | 1740 | 3.888930 | TGGGGAACAAATGAAAGTCTGTC | 59.111 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1624 | 1767 | 9.302345 | CTTAATATTACTTTGCGAGAGAACTGA | 57.698 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1626 | 1769 | 8.723942 | AATATTACTTTGCGAGAGAACTGAAT | 57.276 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1641 | 1784 | 5.645497 | AGAACTGAATTTCTGTATGGCAGTC | 59.355 | 40.000 | 9.06 | 2.66 | 45.23 | 3.51 |
1647 | 1790 | 3.334583 | TTCTGTATGGCAGTCTGAACC | 57.665 | 47.619 | 3.32 | 0.00 | 45.23 | 3.62 |
1649 | 1792 | 2.028112 | TCTGTATGGCAGTCTGAACCAC | 60.028 | 50.000 | 3.32 | 0.00 | 45.23 | 4.16 |
1654 | 1797 | 2.451490 | TGGCAGTCTGAACCACAAAAA | 58.549 | 42.857 | 3.32 | 0.00 | 0.00 | 1.94 |
1666 | 1809 | 6.047870 | TGAACCACAAAAATGGAAATCACTG | 58.952 | 36.000 | 0.00 | 0.00 | 43.02 | 3.66 |
1711 | 2014 | 7.534085 | TGTACGTAGGATTTTAATCAGCTTG | 57.466 | 36.000 | 0.00 | 0.00 | 37.15 | 4.01 |
1733 | 2036 | 8.229137 | GCTTGTCAGCATTTGCAAAATAAATTA | 58.771 | 29.630 | 17.19 | 0.00 | 46.49 | 1.40 |
1745 | 2048 | 9.823098 | TTGCAAAATAAATTAAATGTGTGCATC | 57.177 | 25.926 | 0.00 | 0.00 | 38.01 | 3.91 |
1746 | 2049 | 9.217278 | TGCAAAATAAATTAAATGTGTGCATCT | 57.783 | 25.926 | 0.00 | 0.00 | 33.64 | 2.90 |
1763 | 2066 | 2.890808 | TCTTAACTATGCAGAGGCCG | 57.109 | 50.000 | 13.85 | 0.00 | 40.13 | 6.13 |
1764 | 2067 | 1.412710 | TCTTAACTATGCAGAGGCCGG | 59.587 | 52.381 | 13.85 | 0.00 | 40.13 | 6.13 |
1765 | 2068 | 0.468226 | TTAACTATGCAGAGGCCGGG | 59.532 | 55.000 | 13.85 | 0.00 | 40.13 | 5.73 |
1766 | 2069 | 0.689745 | TAACTATGCAGAGGCCGGGT | 60.690 | 55.000 | 13.85 | 0.00 | 40.13 | 5.28 |
1767 | 2070 | 2.109799 | CTATGCAGAGGCCGGGTG | 59.890 | 66.667 | 2.18 | 0.00 | 40.13 | 4.61 |
1768 | 2071 | 2.687200 | TATGCAGAGGCCGGGTGT | 60.687 | 61.111 | 2.18 | 0.00 | 40.13 | 4.16 |
1769 | 2072 | 1.382009 | TATGCAGAGGCCGGGTGTA | 60.382 | 57.895 | 2.18 | 0.00 | 40.13 | 2.90 |
1770 | 2073 | 0.978667 | TATGCAGAGGCCGGGTGTAA | 60.979 | 55.000 | 2.18 | 0.00 | 40.13 | 2.41 |
1771 | 2074 | 1.635817 | ATGCAGAGGCCGGGTGTAAT | 61.636 | 55.000 | 2.18 | 0.00 | 40.13 | 1.89 |
1772 | 2075 | 0.978667 | TGCAGAGGCCGGGTGTAATA | 60.979 | 55.000 | 2.18 | 0.00 | 40.13 | 0.98 |
1773 | 2076 | 0.532196 | GCAGAGGCCGGGTGTAATAC | 60.532 | 60.000 | 2.18 | 0.00 | 0.00 | 1.89 |
1774 | 2077 | 1.120530 | CAGAGGCCGGGTGTAATACT | 58.879 | 55.000 | 2.18 | 0.00 | 0.00 | 2.12 |
1775 | 2078 | 1.485066 | CAGAGGCCGGGTGTAATACTT | 59.515 | 52.381 | 2.18 | 0.00 | 0.00 | 2.24 |
1776 | 2079 | 2.696707 | CAGAGGCCGGGTGTAATACTTA | 59.303 | 50.000 | 2.18 | 0.00 | 0.00 | 2.24 |
1777 | 2080 | 3.133362 | CAGAGGCCGGGTGTAATACTTAA | 59.867 | 47.826 | 2.18 | 0.00 | 0.00 | 1.85 |
1778 | 2081 | 3.776417 | AGAGGCCGGGTGTAATACTTAAA | 59.224 | 43.478 | 2.18 | 0.00 | 0.00 | 1.52 |
1779 | 2082 | 3.873361 | GAGGCCGGGTGTAATACTTAAAC | 59.127 | 47.826 | 2.18 | 0.00 | 0.00 | 2.01 |
1780 | 2083 | 2.945008 | GGCCGGGTGTAATACTTAAACC | 59.055 | 50.000 | 2.18 | 0.00 | 41.91 | 3.27 |
1781 | 2084 | 3.370846 | GGCCGGGTGTAATACTTAAACCT | 60.371 | 47.826 | 2.18 | 0.00 | 42.23 | 3.50 |
1782 | 2085 | 4.264253 | GCCGGGTGTAATACTTAAACCTT | 58.736 | 43.478 | 2.18 | 0.00 | 42.23 | 3.50 |
1783 | 2086 | 4.701651 | GCCGGGTGTAATACTTAAACCTTT | 59.298 | 41.667 | 2.18 | 0.00 | 42.23 | 3.11 |
1784 | 2087 | 5.183713 | GCCGGGTGTAATACTTAAACCTTTT | 59.816 | 40.000 | 2.18 | 0.00 | 42.23 | 2.27 |
1785 | 2088 | 6.374053 | GCCGGGTGTAATACTTAAACCTTTTA | 59.626 | 38.462 | 2.18 | 0.00 | 42.23 | 1.52 |
1786 | 2089 | 7.094420 | GCCGGGTGTAATACTTAAACCTTTTAA | 60.094 | 37.037 | 2.18 | 0.00 | 42.23 | 1.52 |
1787 | 2090 | 8.453320 | CCGGGTGTAATACTTAAACCTTTTAAG | 58.547 | 37.037 | 14.21 | 14.21 | 42.23 | 1.85 |
1788 | 2091 | 9.002600 | CGGGTGTAATACTTAAACCTTTTAAGT | 57.997 | 33.333 | 21.61 | 21.61 | 42.23 | 2.24 |
1850 | 2153 | 3.213506 | TCATTTTATCGGCCCAGATGTG | 58.786 | 45.455 | 0.00 | 0.00 | 32.39 | 3.21 |
1862 | 2165 | 2.625737 | CCAGATGTGAGCCTGTAACTG | 58.374 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
1871 | 2174 | 2.642254 | CCTGTAACTGTCGGCCCGA | 61.642 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
1922 | 2225 | 1.888512 | CAACCTGTGGATTCAACCCTG | 59.111 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
1927 | 2230 | 0.698818 | GTGGATTCAACCCTGGGAGT | 59.301 | 55.000 | 22.23 | 3.44 | 0.00 | 3.85 |
1928 | 2231 | 0.991920 | TGGATTCAACCCTGGGAGTC | 59.008 | 55.000 | 22.23 | 9.12 | 0.00 | 3.36 |
1929 | 2232 | 0.991920 | GGATTCAACCCTGGGAGTCA | 59.008 | 55.000 | 22.23 | 0.34 | 0.00 | 3.41 |
1930 | 2233 | 1.340114 | GGATTCAACCCTGGGAGTCAC | 60.340 | 57.143 | 22.23 | 5.93 | 0.00 | 3.67 |
1931 | 2234 | 0.698818 | ATTCAACCCTGGGAGTCACC | 59.301 | 55.000 | 22.23 | 0.00 | 38.08 | 4.02 |
1932 | 2235 | 0.696143 | TTCAACCCTGGGAGTCACCA | 60.696 | 55.000 | 22.23 | 0.00 | 41.20 | 4.17 |
1933 | 2236 | 0.696143 | TCAACCCTGGGAGTCACCAA | 60.696 | 55.000 | 22.23 | 0.00 | 40.68 | 3.67 |
1934 | 2237 | 0.250901 | CAACCCTGGGAGTCACCAAG | 60.251 | 60.000 | 22.23 | 0.00 | 40.68 | 3.61 |
1939 | 2242 | 1.897560 | CTGGGAGTCACCAAGGAAAC | 58.102 | 55.000 | 0.00 | 0.00 | 40.68 | 2.78 |
1940 | 2243 | 0.476771 | TGGGAGTCACCAAGGAAACC | 59.523 | 55.000 | 0.00 | 0.00 | 41.20 | 3.27 |
1941 | 2244 | 0.771755 | GGGAGTCACCAAGGAAACCT | 59.228 | 55.000 | 0.00 | 0.00 | 41.20 | 3.50 |
1942 | 2245 | 1.271434 | GGGAGTCACCAAGGAAACCTC | 60.271 | 57.143 | 0.00 | 0.00 | 41.20 | 3.85 |
1943 | 2246 | 1.271434 | GGAGTCACCAAGGAAACCTCC | 60.271 | 57.143 | 0.00 | 0.00 | 39.27 | 4.30 |
1960 | 2263 | 5.036117 | ACCTCCTATATGTCGCATTTTGT | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1995 | 2340 | 5.241378 | GTGATTCGCACAACAATTGAAAG | 57.759 | 39.130 | 13.59 | 3.78 | 46.91 | 2.62 |
1997 | 2342 | 4.975502 | TGATTCGCACAACAATTGAAAGTC | 59.024 | 37.500 | 13.59 | 0.00 | 0.00 | 3.01 |
2003 | 2348 | 4.270808 | GCACAACAATTGAAAGTCCCAAAG | 59.729 | 41.667 | 13.59 | 0.00 | 0.00 | 2.77 |
2004 | 2349 | 4.810491 | CACAACAATTGAAAGTCCCAAAGG | 59.190 | 41.667 | 13.59 | 0.00 | 0.00 | 3.11 |
2014 | 2359 | 2.714259 | TCCCAAAGGACTTTGTGCG | 58.286 | 52.632 | 19.89 | 9.63 | 46.19 | 5.34 |
2015 | 2360 | 1.007387 | CCCAAAGGACTTTGTGCGC | 60.007 | 57.895 | 19.89 | 0.00 | 46.19 | 6.09 |
2016 | 2361 | 1.007387 | CCAAAGGACTTTGTGCGCC | 60.007 | 57.895 | 19.89 | 0.00 | 46.19 | 6.53 |
2017 | 2362 | 1.007387 | CAAAGGACTTTGTGCGCCC | 60.007 | 57.895 | 14.92 | 0.00 | 43.52 | 6.13 |
2018 | 2363 | 1.152756 | AAAGGACTTTGTGCGCCCT | 60.153 | 52.632 | 4.18 | 0.00 | 0.00 | 5.19 |
2019 | 2364 | 1.455383 | AAAGGACTTTGTGCGCCCTG | 61.455 | 55.000 | 4.18 | 0.00 | 0.00 | 4.45 |
2020 | 2365 | 3.365265 | GGACTTTGTGCGCCCTGG | 61.365 | 66.667 | 4.18 | 0.00 | 0.00 | 4.45 |
2021 | 2366 | 3.365265 | GACTTTGTGCGCCCTGGG | 61.365 | 66.667 | 8.86 | 8.86 | 0.00 | 4.45 |
2022 | 2367 | 4.974721 | ACTTTGTGCGCCCTGGGG | 62.975 | 66.667 | 16.03 | 4.75 | 38.57 | 4.96 |
2023 | 2368 | 4.659172 | CTTTGTGCGCCCTGGGGA | 62.659 | 66.667 | 16.03 | 0.00 | 37.50 | 4.81 |
2024 | 2369 | 3.944250 | CTTTGTGCGCCCTGGGGAT | 62.944 | 63.158 | 16.03 | 0.00 | 37.50 | 3.85 |
2025 | 2370 | 3.521765 | TTTGTGCGCCCTGGGGATT | 62.522 | 57.895 | 16.03 | 0.00 | 37.50 | 3.01 |
2026 | 2371 | 3.936772 | TTGTGCGCCCTGGGGATTC | 62.937 | 63.158 | 16.03 | 0.00 | 37.50 | 2.52 |
2029 | 2374 | 4.483243 | GCGCCCTGGGGATTCGAA | 62.483 | 66.667 | 16.03 | 0.00 | 37.50 | 3.71 |
2030 | 2375 | 2.513897 | CGCCCTGGGGATTCGAAC | 60.514 | 66.667 | 16.03 | 0.00 | 37.50 | 3.95 |
2031 | 2376 | 2.674754 | GCCCTGGGGATTCGAACA | 59.325 | 61.111 | 16.03 | 0.00 | 37.50 | 3.18 |
2032 | 2377 | 1.749258 | GCCCTGGGGATTCGAACAC | 60.749 | 63.158 | 16.03 | 0.00 | 37.50 | 3.32 |
2033 | 2378 | 1.077716 | CCCTGGGGATTCGAACACC | 60.078 | 63.158 | 4.27 | 7.36 | 37.50 | 4.16 |
2034 | 2379 | 1.682849 | CCTGGGGATTCGAACACCA | 59.317 | 57.895 | 20.01 | 18.61 | 38.61 | 4.17 |
2035 | 2380 | 0.676782 | CCTGGGGATTCGAACACCAC | 60.677 | 60.000 | 20.01 | 17.99 | 35.76 | 4.16 |
2036 | 2381 | 0.036164 | CTGGGGATTCGAACACCACA | 59.964 | 55.000 | 21.57 | 21.57 | 35.76 | 4.17 |
2043 | 2388 | 1.338890 | TTCGAACACCACACCTCCCA | 61.339 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2059 | 2404 | 0.741574 | CCCATTGTTAGGTGCGCGTA | 60.742 | 55.000 | 8.43 | 0.00 | 0.00 | 4.42 |
2101 | 2446 | 6.531503 | TGAACTTTGGTGACCAATAAACAA | 57.468 | 33.333 | 19.03 | 0.49 | 43.55 | 2.83 |
2102 | 2447 | 7.118496 | TGAACTTTGGTGACCAATAAACAAT | 57.882 | 32.000 | 19.03 | 0.65 | 43.55 | 2.71 |
2105 | 2450 | 7.589958 | ACTTTGGTGACCAATAAACAATACA | 57.410 | 32.000 | 19.03 | 0.00 | 43.55 | 2.29 |
2107 | 2452 | 7.504238 | ACTTTGGTGACCAATAAACAATACAGA | 59.496 | 33.333 | 19.03 | 0.00 | 43.55 | 3.41 |
2114 | 2459 | 8.995220 | TGACCAATAAACAATACAGAGTTGTAC | 58.005 | 33.333 | 0.00 | 0.00 | 42.29 | 2.90 |
2131 | 2476 | 1.089920 | TACGAACTACCAGGAGCGAC | 58.910 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2138 | 2483 | 4.060038 | ACTACCAGGAGCGACATATTTG | 57.940 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2146 | 2491 | 6.381801 | CAGGAGCGACATATTTGAAGTTTTT | 58.618 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2152 | 2497 | 9.522804 | AGCGACATATTTGAAGTTTTTACAAAA | 57.477 | 25.926 | 0.00 | 0.00 | 37.14 | 2.44 |
2210 | 2556 | 9.218440 | ACACAGAAACTTTTCAAAATTGTGAAT | 57.782 | 25.926 | 19.74 | 0.00 | 39.07 | 2.57 |
2283 | 2630 | 6.106877 | AGATCACGTACATTTTTGGAATCG | 57.893 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
2284 | 2631 | 5.872617 | AGATCACGTACATTTTTGGAATCGA | 59.127 | 36.000 | 0.00 | 0.00 | 0.00 | 3.59 |
2288 | 2635 | 6.147985 | TCACGTACATTTTTGGAATCGATGAA | 59.852 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2289 | 2636 | 6.248420 | CACGTACATTTTTGGAATCGATGAAC | 59.752 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2292 | 2639 | 7.484641 | CGTACATTTTTGGAATCGATGAACAAT | 59.515 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2293 | 2640 | 9.139174 | GTACATTTTTGGAATCGATGAACAATT | 57.861 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
138 | 145 | 1.221566 | CCACGAGTGGCATCCATCA | 59.778 | 57.895 | 9.54 | 0.00 | 44.73 | 3.07 |
226 | 233 | 1.160329 | GGCGTCACAGCAGTTCAACT | 61.160 | 55.000 | 0.00 | 0.00 | 39.27 | 3.16 |
271 | 279 | 6.119536 | ACATGAATAGCCCGTTTCAAGATTA | 58.880 | 36.000 | 0.00 | 0.00 | 35.63 | 1.75 |
272 | 280 | 4.949856 | ACATGAATAGCCCGTTTCAAGATT | 59.050 | 37.500 | 0.00 | 0.00 | 35.63 | 2.40 |
298 | 306 | 3.438360 | GATGAACAAAACATCGCCATCC | 58.562 | 45.455 | 0.00 | 0.00 | 35.55 | 3.51 |
313 | 321 | 2.789893 | GCTGAACGTCTATCCGATGAAC | 59.210 | 50.000 | 0.00 | 0.00 | 32.79 | 3.18 |
325 | 333 | 0.313672 | TGGGCAATTTGCTGAACGTC | 59.686 | 50.000 | 20.06 | 2.52 | 44.28 | 4.34 |
326 | 334 | 0.749649 | TTGGGCAATTTGCTGAACGT | 59.250 | 45.000 | 20.06 | 0.00 | 44.28 | 3.99 |
328 | 336 | 5.177326 | TCATTATTGGGCAATTTGCTGAAC | 58.823 | 37.500 | 20.06 | 9.46 | 44.28 | 3.18 |
340 | 348 | 5.928264 | GCAATAGACCATTTCATTATTGGGC | 59.072 | 40.000 | 5.12 | 0.00 | 38.96 | 5.36 |
356 | 364 | 9.624697 | TTCAATGTAGTTTTTGATGCAATAGAC | 57.375 | 29.630 | 0.00 | 0.00 | 32.27 | 2.59 |
363 | 371 | 7.713764 | ACCTTTTCAATGTAGTTTTTGATGC | 57.286 | 32.000 | 0.00 | 0.00 | 32.27 | 3.91 |
384 | 414 | 8.747538 | AACAATCAGTGAACTAAAAGTAACCT | 57.252 | 30.769 | 0.00 | 0.00 | 0.00 | 3.50 |
388 | 418 | 9.616156 | TGGTAAACAATCAGTGAACTAAAAGTA | 57.384 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
389 | 419 | 8.514330 | TGGTAAACAATCAGTGAACTAAAAGT | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
390 | 420 | 9.398170 | CATGGTAAACAATCAGTGAACTAAAAG | 57.602 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
391 | 421 | 9.126151 | TCATGGTAAACAATCAGTGAACTAAAA | 57.874 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
392 | 422 | 8.684386 | TCATGGTAAACAATCAGTGAACTAAA | 57.316 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
393 | 423 | 8.729756 | CATCATGGTAAACAATCAGTGAACTAA | 58.270 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
394 | 424 | 7.882791 | ACATCATGGTAAACAATCAGTGAACTA | 59.117 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
395 | 425 | 6.716628 | ACATCATGGTAAACAATCAGTGAACT | 59.283 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
396 | 426 | 6.913170 | ACATCATGGTAAACAATCAGTGAAC | 58.087 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
400 | 430 | 6.721208 | AGGAAACATCATGGTAAACAATCAGT | 59.279 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
401 | 431 | 7.161773 | AGGAAACATCATGGTAAACAATCAG | 57.838 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
402 | 432 | 8.642935 | TTAGGAAACATCATGGTAAACAATCA | 57.357 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
403 | 433 | 8.956426 | TCTTAGGAAACATCATGGTAAACAATC | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
404 | 434 | 8.739972 | GTCTTAGGAAACATCATGGTAAACAAT | 58.260 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
405 | 435 | 7.721842 | TGTCTTAGGAAACATCATGGTAAACAA | 59.278 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
406 | 436 | 7.227873 | TGTCTTAGGAAACATCATGGTAAACA | 58.772 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
407 | 437 | 7.681939 | TGTCTTAGGAAACATCATGGTAAAC | 57.318 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
408 | 438 | 7.921786 | CTGTCTTAGGAAACATCATGGTAAA | 57.078 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
425 | 455 | 4.778213 | AAGCTATCCAATGCCTGTCTTA | 57.222 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
426 | 456 | 3.659183 | AAGCTATCCAATGCCTGTCTT | 57.341 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
427 | 457 | 3.713764 | ACTAAGCTATCCAATGCCTGTCT | 59.286 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
428 | 458 | 4.078639 | ACTAAGCTATCCAATGCCTGTC | 57.921 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
429 | 459 | 4.510167 | AACTAAGCTATCCAATGCCTGT | 57.490 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
499 | 529 | 8.706492 | ACGATTGTTCTACGGTATATTTTCAA | 57.294 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
500 | 530 | 8.706492 | AACGATTGTTCTACGGTATATTTTCA | 57.294 | 30.769 | 0.00 | 0.00 | 30.83 | 2.69 |
516 | 546 | 4.238514 | GCAGAGACTGTAGAACGATTGTT | 58.761 | 43.478 | 0.00 | 0.00 | 35.87 | 2.83 |
517 | 547 | 3.367498 | GGCAGAGACTGTAGAACGATTGT | 60.367 | 47.826 | 0.00 | 0.00 | 33.43 | 2.71 |
519 | 549 | 3.093057 | AGGCAGAGACTGTAGAACGATT | 58.907 | 45.455 | 0.00 | 0.00 | 33.43 | 3.34 |
520 | 550 | 2.685897 | GAGGCAGAGACTGTAGAACGAT | 59.314 | 50.000 | 0.00 | 0.00 | 33.43 | 3.73 |
522 | 552 | 1.813178 | TGAGGCAGAGACTGTAGAACG | 59.187 | 52.381 | 0.00 | 0.00 | 33.43 | 3.95 |
523 | 553 | 3.944055 | TTGAGGCAGAGACTGTAGAAC | 57.056 | 47.619 | 0.00 | 0.00 | 33.43 | 3.01 |
525 | 555 | 4.152647 | TCTTTTGAGGCAGAGACTGTAGA | 58.847 | 43.478 | 0.00 | 0.00 | 33.43 | 2.59 |
527 | 557 | 4.955811 | TTCTTTTGAGGCAGAGACTGTA | 57.044 | 40.909 | 0.00 | 0.00 | 33.43 | 2.74 |
528 | 558 | 3.845781 | TTCTTTTGAGGCAGAGACTGT | 57.154 | 42.857 | 0.00 | 0.00 | 33.43 | 3.55 |
529 | 559 | 4.384056 | TCTTTCTTTTGAGGCAGAGACTG | 58.616 | 43.478 | 0.00 | 0.00 | 34.12 | 3.51 |
530 | 560 | 4.696479 | TCTTTCTTTTGAGGCAGAGACT | 57.304 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
532 | 562 | 5.296151 | TCTTCTTTCTTTTGAGGCAGAGA | 57.704 | 39.130 | 0.00 | 0.00 | 0.00 | 3.10 |
533 | 563 | 5.123661 | GGATCTTCTTTCTTTTGAGGCAGAG | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
534 | 564 | 5.006386 | GGATCTTCTTTCTTTTGAGGCAGA | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
536 | 566 | 4.990526 | AGGATCTTCTTTCTTTTGAGGCA | 58.009 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
538 | 568 | 6.714356 | AGTGAAGGATCTTCTTTCTTTTGAGG | 59.286 | 38.462 | 8.80 | 0.00 | 34.09 | 3.86 |
539 | 569 | 7.742556 | AGTGAAGGATCTTCTTTCTTTTGAG | 57.257 | 36.000 | 8.80 | 0.00 | 34.09 | 3.02 |
540 | 570 | 9.277783 | CTTAGTGAAGGATCTTCTTTCTTTTGA | 57.722 | 33.333 | 8.80 | 0.00 | 34.09 | 2.69 |
541 | 571 | 8.020244 | GCTTAGTGAAGGATCTTCTTTCTTTTG | 58.980 | 37.037 | 8.80 | 2.36 | 34.09 | 2.44 |
542 | 572 | 7.941790 | AGCTTAGTGAAGGATCTTCTTTCTTTT | 59.058 | 33.333 | 8.80 | 0.00 | 34.09 | 2.27 |
543 | 573 | 7.457561 | AGCTTAGTGAAGGATCTTCTTTCTTT | 58.542 | 34.615 | 8.80 | 0.00 | 34.09 | 2.52 |
544 | 574 | 7.014988 | AGCTTAGTGAAGGATCTTCTTTCTT | 57.985 | 36.000 | 8.80 | 0.00 | 34.09 | 2.52 |
545 | 575 | 6.619329 | AGCTTAGTGAAGGATCTTCTTTCT | 57.381 | 37.500 | 8.80 | 7.24 | 34.09 | 2.52 |
547 | 577 | 7.037945 | AGGTAAGCTTAGTGAAGGATCTTCTTT | 60.038 | 37.037 | 6.38 | 1.05 | 32.84 | 2.52 |
548 | 578 | 6.442244 | AGGTAAGCTTAGTGAAGGATCTTCTT | 59.558 | 38.462 | 6.38 | 0.00 | 32.84 | 2.52 |
549 | 579 | 5.961421 | AGGTAAGCTTAGTGAAGGATCTTCT | 59.039 | 40.000 | 6.38 | 0.00 | 32.84 | 2.85 |
551 | 581 | 5.485708 | ACAGGTAAGCTTAGTGAAGGATCTT | 59.514 | 40.000 | 18.49 | 0.00 | 32.84 | 2.40 |
554 | 584 | 5.763876 | AACAGGTAAGCTTAGTGAAGGAT | 57.236 | 39.130 | 18.49 | 0.00 | 32.84 | 3.24 |
555 | 585 | 5.562298 | AAACAGGTAAGCTTAGTGAAGGA | 57.438 | 39.130 | 18.49 | 0.00 | 32.84 | 3.36 |
556 | 586 | 6.369065 | CAGTAAACAGGTAAGCTTAGTGAAGG | 59.631 | 42.308 | 18.49 | 4.89 | 32.84 | 3.46 |
557 | 587 | 7.152645 | TCAGTAAACAGGTAAGCTTAGTGAAG | 58.847 | 38.462 | 18.49 | 6.36 | 33.09 | 3.02 |
560 | 590 | 6.128526 | GCTTCAGTAAACAGGTAAGCTTAGTG | 60.129 | 42.308 | 6.38 | 10.09 | 37.08 | 2.74 |
561 | 591 | 5.932883 | GCTTCAGTAAACAGGTAAGCTTAGT | 59.067 | 40.000 | 6.38 | 0.00 | 37.08 | 2.24 |
562 | 592 | 5.932303 | TGCTTCAGTAAACAGGTAAGCTTAG | 59.068 | 40.000 | 6.38 | 0.00 | 39.93 | 2.18 |
563 | 593 | 5.699458 | GTGCTTCAGTAAACAGGTAAGCTTA | 59.301 | 40.000 | 0.86 | 0.86 | 39.93 | 3.09 |
564 | 594 | 4.515567 | GTGCTTCAGTAAACAGGTAAGCTT | 59.484 | 41.667 | 3.48 | 3.48 | 39.93 | 3.74 |
565 | 595 | 4.065789 | GTGCTTCAGTAAACAGGTAAGCT | 58.934 | 43.478 | 0.00 | 0.00 | 39.93 | 3.74 |
566 | 596 | 4.065789 | AGTGCTTCAGTAAACAGGTAAGC | 58.934 | 43.478 | 0.00 | 0.00 | 39.73 | 3.09 |
567 | 597 | 6.929606 | AGTTAGTGCTTCAGTAAACAGGTAAG | 59.070 | 38.462 | 0.00 | 0.00 | 32.10 | 2.34 |
568 | 598 | 6.823497 | AGTTAGTGCTTCAGTAAACAGGTAA | 58.177 | 36.000 | 0.00 | 0.00 | 32.10 | 2.85 |
569 | 599 | 6.415206 | AGTTAGTGCTTCAGTAAACAGGTA | 57.585 | 37.500 | 0.00 | 0.00 | 32.10 | 3.08 |
570 | 600 | 5.291905 | AGTTAGTGCTTCAGTAAACAGGT | 57.708 | 39.130 | 0.00 | 0.00 | 32.10 | 4.00 |
571 | 601 | 6.929606 | AGTAAGTTAGTGCTTCAGTAAACAGG | 59.070 | 38.462 | 0.00 | 0.00 | 32.10 | 4.00 |
572 | 602 | 7.948278 | AGTAAGTTAGTGCTTCAGTAAACAG | 57.052 | 36.000 | 0.00 | 0.00 | 32.10 | 3.16 |
573 | 603 | 8.202137 | AGAAGTAAGTTAGTGCTTCAGTAAACA | 58.798 | 33.333 | 11.99 | 0.00 | 39.62 | 2.83 |
574 | 604 | 8.590719 | AGAAGTAAGTTAGTGCTTCAGTAAAC | 57.409 | 34.615 | 11.99 | 0.00 | 39.62 | 2.01 |
575 | 605 | 9.257651 | GAAGAAGTAAGTTAGTGCTTCAGTAAA | 57.742 | 33.333 | 24.96 | 0.00 | 41.52 | 2.01 |
576 | 606 | 8.639761 | AGAAGAAGTAAGTTAGTGCTTCAGTAA | 58.360 | 33.333 | 28.88 | 0.00 | 43.45 | 2.24 |
577 | 607 | 8.179509 | AGAAGAAGTAAGTTAGTGCTTCAGTA | 57.820 | 34.615 | 28.88 | 0.00 | 43.45 | 2.74 |
578 | 608 | 7.056844 | AGAAGAAGTAAGTTAGTGCTTCAGT | 57.943 | 36.000 | 28.88 | 14.46 | 43.45 | 3.41 |
579 | 609 | 7.870445 | AGAAGAAGAAGTAAGTTAGTGCTTCAG | 59.130 | 37.037 | 28.88 | 0.00 | 43.45 | 3.02 |
580 | 610 | 7.727181 | AGAAGAAGAAGTAAGTTAGTGCTTCA | 58.273 | 34.615 | 28.88 | 0.00 | 43.45 | 3.02 |
581 | 611 | 7.868415 | TGAGAAGAAGAAGTAAGTTAGTGCTTC | 59.132 | 37.037 | 23.39 | 23.39 | 41.99 | 3.86 |
582 | 612 | 7.654116 | GTGAGAAGAAGAAGTAAGTTAGTGCTT | 59.346 | 37.037 | 10.33 | 10.33 | 29.42 | 3.91 |
583 | 613 | 7.149307 | GTGAGAAGAAGAAGTAAGTTAGTGCT | 58.851 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
584 | 614 | 6.924060 | TGTGAGAAGAAGAAGTAAGTTAGTGC | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
585 | 615 | 8.920665 | CATGTGAGAAGAAGAAGTAAGTTAGTG | 58.079 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
586 | 616 | 8.643324 | ACATGTGAGAAGAAGAAGTAAGTTAGT | 58.357 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
594 | 624 | 9.646427 | GAGTTTATACATGTGAGAAGAAGAAGT | 57.354 | 33.333 | 9.11 | 0.00 | 0.00 | 3.01 |
595 | 625 | 9.645059 | TGAGTTTATACATGTGAGAAGAAGAAG | 57.355 | 33.333 | 9.11 | 0.00 | 0.00 | 2.85 |
596 | 626 | 9.996554 | TTGAGTTTATACATGTGAGAAGAAGAA | 57.003 | 29.630 | 9.11 | 0.00 | 0.00 | 2.52 |
597 | 627 | 9.424319 | GTTGAGTTTATACATGTGAGAAGAAGA | 57.576 | 33.333 | 9.11 | 0.00 | 0.00 | 2.87 |
598 | 628 | 9.208022 | TGTTGAGTTTATACATGTGAGAAGAAG | 57.792 | 33.333 | 9.11 | 0.00 | 0.00 | 2.85 |
599 | 629 | 9.208022 | CTGTTGAGTTTATACATGTGAGAAGAA | 57.792 | 33.333 | 9.11 | 0.00 | 0.00 | 2.52 |
600 | 630 | 7.331934 | GCTGTTGAGTTTATACATGTGAGAAGA | 59.668 | 37.037 | 9.11 | 0.00 | 0.00 | 2.87 |
601 | 631 | 7.332926 | AGCTGTTGAGTTTATACATGTGAGAAG | 59.667 | 37.037 | 9.11 | 0.00 | 0.00 | 2.85 |
602 | 632 | 7.161404 | AGCTGTTGAGTTTATACATGTGAGAA | 58.839 | 34.615 | 9.11 | 0.00 | 0.00 | 2.87 |
603 | 633 | 6.701340 | AGCTGTTGAGTTTATACATGTGAGA | 58.299 | 36.000 | 9.11 | 0.00 | 0.00 | 3.27 |
606 | 636 | 8.177663 | CCTTTAGCTGTTGAGTTTATACATGTG | 58.822 | 37.037 | 9.11 | 0.00 | 0.00 | 3.21 |
704 | 734 | 2.462456 | TTGAGATGAGATATGCCGCC | 57.538 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
801 | 831 | 5.529800 | GCTGTCAGTTGTTAAACCTCCTAAA | 59.470 | 40.000 | 0.93 | 0.00 | 36.94 | 1.85 |
803 | 833 | 4.101898 | TGCTGTCAGTTGTTAAACCTCCTA | 59.898 | 41.667 | 0.93 | 0.00 | 36.94 | 2.94 |
830 | 860 | 6.990798 | AGTAGCGGAGTACTATATTTTTCCC | 58.009 | 40.000 | 0.00 | 0.00 | 31.14 | 3.97 |
893 | 924 | 1.066908 | GTTGCTTGCTTGCTTGGTGTA | 59.933 | 47.619 | 3.47 | 0.00 | 0.00 | 2.90 |
907 | 938 | 5.220710 | AGTGAGTTCATCAGTAGTTGCTT | 57.779 | 39.130 | 0.00 | 0.00 | 39.94 | 3.91 |
933 | 967 | 4.815040 | TCGATAGCTAACTAGTGTCAGC | 57.185 | 45.455 | 13.77 | 13.77 | 0.00 | 4.26 |
1307 | 1344 | 1.461127 | GTGAAGAAACGAGCAGCGATT | 59.539 | 47.619 | 5.99 | 0.14 | 44.57 | 3.34 |
1354 | 1391 | 1.872952 | TGCCAAATGTCACGAACTGAG | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 3.35 |
1365 | 1402 | 5.436175 | TGCTATGTACATACTGCCAAATGT | 58.564 | 37.500 | 19.08 | 0.00 | 39.56 | 2.71 |
1448 | 1590 | 6.648879 | TTAAAAAGCATTCACCAGCTACTT | 57.351 | 33.333 | 0.00 | 0.00 | 40.90 | 2.24 |
1493 | 1635 | 3.078097 | CGAGTCAGATCGACCATAGGAT | 58.922 | 50.000 | 12.17 | 0.00 | 46.69 | 3.24 |
1535 | 1677 | 4.505191 | CCGAATGTCATTTGAAATCCATGC | 59.495 | 41.667 | 13.60 | 0.00 | 0.00 | 4.06 |
1567 | 1709 | 6.406692 | TTCATTTGTTCCCCACGATAAAAA | 57.593 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
1568 | 1710 | 6.041069 | ACTTTCATTTGTTCCCCACGATAAAA | 59.959 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
1570 | 1712 | 5.074115 | ACTTTCATTTGTTCCCCACGATAA | 58.926 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
1571 | 1713 | 4.658063 | ACTTTCATTTGTTCCCCACGATA | 58.342 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
1592 | 1734 | 8.630278 | TCTCGCAAAGTAATATTAAGACAGAC | 57.370 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
1598 | 1740 | 9.302345 | TCAGTTCTCTCGCAAAGTAATATTAAG | 57.698 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
1607 | 1749 | 5.049818 | CAGAAATTCAGTTCTCTCGCAAAGT | 60.050 | 40.000 | 0.00 | 0.00 | 35.63 | 2.66 |
1608 | 1750 | 5.049818 | ACAGAAATTCAGTTCTCTCGCAAAG | 60.050 | 40.000 | 0.00 | 0.00 | 35.63 | 2.77 |
1613 | 1756 | 5.006165 | GCCATACAGAAATTCAGTTCTCTCG | 59.994 | 44.000 | 0.00 | 0.00 | 35.63 | 4.04 |
1641 | 1784 | 6.201425 | CAGTGATTTCCATTTTTGTGGTTCAG | 59.799 | 38.462 | 0.00 | 0.00 | 40.27 | 3.02 |
1647 | 1790 | 4.990426 | GGGACAGTGATTTCCATTTTTGTG | 59.010 | 41.667 | 0.00 | 0.00 | 33.01 | 3.33 |
1649 | 1792 | 5.212532 | TGGGACAGTGATTTCCATTTTTG | 57.787 | 39.130 | 0.00 | 0.00 | 33.01 | 2.44 |
1654 | 1797 | 3.828451 | CAGTTTGGGACAGTGATTTCCAT | 59.172 | 43.478 | 0.00 | 0.00 | 42.39 | 3.41 |
1742 | 2045 | 3.062763 | CGGCCTCTGCATAGTTAAGATG | 58.937 | 50.000 | 0.00 | 0.00 | 40.13 | 2.90 |
1743 | 2046 | 2.037772 | CCGGCCTCTGCATAGTTAAGAT | 59.962 | 50.000 | 0.00 | 0.00 | 40.13 | 2.40 |
1744 | 2047 | 1.412710 | CCGGCCTCTGCATAGTTAAGA | 59.587 | 52.381 | 0.00 | 0.00 | 40.13 | 2.10 |
1745 | 2048 | 1.541233 | CCCGGCCTCTGCATAGTTAAG | 60.541 | 57.143 | 0.00 | 0.00 | 40.13 | 1.85 |
1746 | 2049 | 0.468226 | CCCGGCCTCTGCATAGTTAA | 59.532 | 55.000 | 0.00 | 0.00 | 40.13 | 2.01 |
1747 | 2050 | 0.689745 | ACCCGGCCTCTGCATAGTTA | 60.690 | 55.000 | 0.00 | 0.00 | 40.13 | 2.24 |
1748 | 2051 | 1.995626 | ACCCGGCCTCTGCATAGTT | 60.996 | 57.895 | 0.00 | 0.00 | 40.13 | 2.24 |
1749 | 2052 | 2.365635 | ACCCGGCCTCTGCATAGT | 60.366 | 61.111 | 0.00 | 0.00 | 40.13 | 2.12 |
1750 | 2053 | 1.399744 | TACACCCGGCCTCTGCATAG | 61.400 | 60.000 | 0.00 | 0.00 | 40.13 | 2.23 |
1751 | 2054 | 0.978667 | TTACACCCGGCCTCTGCATA | 60.979 | 55.000 | 0.00 | 0.00 | 40.13 | 3.14 |
1752 | 2055 | 1.635817 | ATTACACCCGGCCTCTGCAT | 61.636 | 55.000 | 0.00 | 0.00 | 40.13 | 3.96 |
1753 | 2056 | 0.978667 | TATTACACCCGGCCTCTGCA | 60.979 | 55.000 | 0.00 | 0.00 | 40.13 | 4.41 |
1754 | 2057 | 0.532196 | GTATTACACCCGGCCTCTGC | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1755 | 2058 | 1.120530 | AGTATTACACCCGGCCTCTG | 58.879 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1756 | 2059 | 1.875488 | AAGTATTACACCCGGCCTCT | 58.125 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1757 | 2060 | 3.825143 | TTAAGTATTACACCCGGCCTC | 57.175 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
1758 | 2061 | 3.370846 | GGTTTAAGTATTACACCCGGCCT | 60.371 | 47.826 | 0.00 | 0.00 | 43.82 | 5.19 |
1759 | 2062 | 2.945008 | GGTTTAAGTATTACACCCGGCC | 59.055 | 50.000 | 0.00 | 0.00 | 43.82 | 6.13 |
1818 | 2121 | 8.482128 | TGGGCCGATAAAATGAAGAATTTATTT | 58.518 | 29.630 | 0.00 | 0.00 | 44.79 | 1.40 |
1819 | 2122 | 8.017418 | TGGGCCGATAAAATGAAGAATTTATT | 57.983 | 30.769 | 0.00 | 0.00 | 37.51 | 1.40 |
1820 | 2123 | 7.505585 | TCTGGGCCGATAAAATGAAGAATTTAT | 59.494 | 33.333 | 0.00 | 0.00 | 37.51 | 1.40 |
1821 | 2124 | 6.831353 | TCTGGGCCGATAAAATGAAGAATTTA | 59.169 | 34.615 | 0.00 | 0.00 | 37.51 | 1.40 |
1822 | 2125 | 5.656416 | TCTGGGCCGATAAAATGAAGAATTT | 59.344 | 36.000 | 0.00 | 0.00 | 40.32 | 1.82 |
1823 | 2126 | 5.200483 | TCTGGGCCGATAAAATGAAGAATT | 58.800 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
1824 | 2127 | 4.792068 | TCTGGGCCGATAAAATGAAGAAT | 58.208 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
1825 | 2128 | 4.229304 | TCTGGGCCGATAAAATGAAGAA | 57.771 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
1826 | 2129 | 3.924114 | TCTGGGCCGATAAAATGAAGA | 57.076 | 42.857 | 0.00 | 0.00 | 0.00 | 2.87 |
1827 | 2130 | 3.885297 | ACATCTGGGCCGATAAAATGAAG | 59.115 | 43.478 | 9.90 | 0.00 | 0.00 | 3.02 |
1828 | 2131 | 3.631686 | CACATCTGGGCCGATAAAATGAA | 59.368 | 43.478 | 9.90 | 0.00 | 0.00 | 2.57 |
1829 | 2132 | 3.118075 | TCACATCTGGGCCGATAAAATGA | 60.118 | 43.478 | 9.90 | 8.99 | 0.00 | 2.57 |
1830 | 2133 | 3.213506 | TCACATCTGGGCCGATAAAATG | 58.786 | 45.455 | 9.90 | 4.78 | 0.00 | 2.32 |
1831 | 2134 | 3.480470 | CTCACATCTGGGCCGATAAAAT | 58.520 | 45.455 | 9.90 | 0.00 | 0.00 | 1.82 |
1832 | 2135 | 2.917933 | CTCACATCTGGGCCGATAAAA | 58.082 | 47.619 | 9.90 | 0.25 | 0.00 | 1.52 |
1841 | 2144 | 1.556911 | AGTTACAGGCTCACATCTGGG | 59.443 | 52.381 | 0.00 | 0.00 | 35.47 | 4.45 |
1850 | 2153 | 4.187056 | GCCGACAGTTACAGGCTC | 57.813 | 61.111 | 0.00 | 0.00 | 45.67 | 4.70 |
1871 | 2174 | 2.104281 | GGTAGACACTGTTGTTCCTGGT | 59.896 | 50.000 | 0.00 | 0.00 | 35.47 | 4.00 |
1909 | 2212 | 0.991920 | GACTCCCAGGGTTGAATCCA | 59.008 | 55.000 | 5.01 | 0.00 | 0.00 | 3.41 |
1922 | 2225 | 0.771755 | AGGTTTCCTTGGTGACTCCC | 59.228 | 55.000 | 0.00 | 0.00 | 34.77 | 4.30 |
1934 | 2237 | 3.746045 | TGCGACATATAGGAGGTTTCC | 57.254 | 47.619 | 0.00 | 0.00 | 44.39 | 3.13 |
1935 | 2238 | 6.038271 | ACAAAATGCGACATATAGGAGGTTTC | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 2.78 |
1936 | 2239 | 5.885912 | ACAAAATGCGACATATAGGAGGTTT | 59.114 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1937 | 2240 | 5.296780 | CACAAAATGCGACATATAGGAGGTT | 59.703 | 40.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1938 | 2241 | 4.816385 | CACAAAATGCGACATATAGGAGGT | 59.184 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1939 | 2242 | 5.050091 | GTCACAAAATGCGACATATAGGAGG | 60.050 | 44.000 | 0.00 | 0.00 | 30.34 | 4.30 |
1940 | 2243 | 5.523552 | TGTCACAAAATGCGACATATAGGAG | 59.476 | 40.000 | 0.00 | 0.00 | 34.85 | 3.69 |
1941 | 2244 | 5.423886 | TGTCACAAAATGCGACATATAGGA | 58.576 | 37.500 | 0.00 | 0.00 | 34.85 | 2.94 |
1942 | 2245 | 5.733226 | TGTCACAAAATGCGACATATAGG | 57.267 | 39.130 | 0.00 | 0.00 | 34.85 | 2.57 |
1943 | 2246 | 8.446489 | TTTTTGTCACAAAATGCGACATATAG | 57.554 | 30.769 | 16.41 | 0.00 | 38.94 | 1.31 |
1944 | 2247 | 8.079203 | ACTTTTTGTCACAAAATGCGACATATA | 58.921 | 29.630 | 22.55 | 3.41 | 38.94 | 0.86 |
1945 | 2248 | 6.922957 | ACTTTTTGTCACAAAATGCGACATAT | 59.077 | 30.769 | 22.55 | 4.97 | 38.94 | 1.78 |
1960 | 2263 | 2.032377 | GCGAATCACCGACTTTTTGTCA | 60.032 | 45.455 | 0.00 | 0.00 | 45.60 | 3.58 |
1967 | 2270 | 0.865769 | GTTGTGCGAATCACCGACTT | 59.134 | 50.000 | 0.00 | 0.00 | 45.03 | 3.01 |
1971 | 2274 | 1.978097 | CAATTGTTGTGCGAATCACCG | 59.022 | 47.619 | 0.00 | 0.00 | 45.03 | 4.94 |
1974 | 2277 | 4.930963 | ACTTTCAATTGTTGTGCGAATCA | 58.069 | 34.783 | 5.13 | 0.00 | 0.00 | 2.57 |
2003 | 2348 | 3.365265 | CCAGGGCGCACAAAGTCC | 61.365 | 66.667 | 14.57 | 0.00 | 0.00 | 3.85 |
2004 | 2349 | 3.365265 | CCCAGGGCGCACAAAGTC | 61.365 | 66.667 | 14.57 | 0.00 | 0.00 | 3.01 |
2006 | 2351 | 3.944250 | ATCCCCAGGGCGCACAAAG | 62.944 | 63.158 | 14.57 | 0.00 | 34.68 | 2.77 |
2008 | 2353 | 3.936772 | GAATCCCCAGGGCGCACAA | 62.937 | 63.158 | 14.57 | 0.00 | 34.68 | 3.33 |
2014 | 2359 | 1.749258 | GTGTTCGAATCCCCAGGGC | 60.749 | 63.158 | 0.00 | 0.00 | 34.68 | 5.19 |
2015 | 2360 | 1.077716 | GGTGTTCGAATCCCCAGGG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
2016 | 2361 | 0.676782 | GTGGTGTTCGAATCCCCAGG | 60.677 | 60.000 | 16.11 | 0.00 | 0.00 | 4.45 |
2017 | 2362 | 0.036164 | TGTGGTGTTCGAATCCCCAG | 59.964 | 55.000 | 16.11 | 0.00 | 0.00 | 4.45 |
2018 | 2363 | 0.250553 | GTGTGGTGTTCGAATCCCCA | 60.251 | 55.000 | 16.11 | 12.61 | 0.00 | 4.96 |
2019 | 2364 | 0.958876 | GGTGTGGTGTTCGAATCCCC | 60.959 | 60.000 | 16.11 | 10.56 | 0.00 | 4.81 |
2020 | 2365 | 0.036306 | AGGTGTGGTGTTCGAATCCC | 59.964 | 55.000 | 16.11 | 12.63 | 0.00 | 3.85 |
2021 | 2366 | 1.439679 | GAGGTGTGGTGTTCGAATCC | 58.560 | 55.000 | 0.00 | 8.23 | 0.00 | 3.01 |
2022 | 2367 | 1.439679 | GGAGGTGTGGTGTTCGAATC | 58.560 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2023 | 2368 | 0.036306 | GGGAGGTGTGGTGTTCGAAT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2024 | 2369 | 1.338890 | TGGGAGGTGTGGTGTTCGAA | 61.339 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2025 | 2370 | 1.125093 | ATGGGAGGTGTGGTGTTCGA | 61.125 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2026 | 2371 | 0.250727 | AATGGGAGGTGTGGTGTTCG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2027 | 2372 | 1.247567 | CAATGGGAGGTGTGGTGTTC | 58.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2028 | 2373 | 0.555769 | ACAATGGGAGGTGTGGTGTT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2029 | 2374 | 0.555769 | AACAATGGGAGGTGTGGTGT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2030 | 2375 | 2.436417 | CTAACAATGGGAGGTGTGGTG | 58.564 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
2031 | 2376 | 1.354368 | CCTAACAATGGGAGGTGTGGT | 59.646 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
2032 | 2377 | 1.354368 | ACCTAACAATGGGAGGTGTGG | 59.646 | 52.381 | 7.44 | 0.00 | 42.13 | 4.17 |
2033 | 2378 | 2.879103 | ACCTAACAATGGGAGGTGTG | 57.121 | 50.000 | 7.44 | 0.00 | 42.13 | 3.82 |
2036 | 2381 | 0.035439 | CGCACCTAACAATGGGAGGT | 60.035 | 55.000 | 2.89 | 2.89 | 44.65 | 3.85 |
2043 | 2388 | 2.596904 | AGATACGCGCACCTAACAAT | 57.403 | 45.000 | 5.73 | 0.00 | 0.00 | 2.71 |
2101 | 2446 | 5.125097 | CCTGGTAGTTCGTACAACTCTGTAT | 59.875 | 44.000 | 12.14 | 0.00 | 40.16 | 2.29 |
2102 | 2447 | 4.456911 | CCTGGTAGTTCGTACAACTCTGTA | 59.543 | 45.833 | 12.14 | 0.00 | 36.96 | 2.74 |
2105 | 2450 | 3.757493 | CTCCTGGTAGTTCGTACAACTCT | 59.243 | 47.826 | 12.14 | 0.00 | 32.62 | 3.24 |
2107 | 2452 | 2.230750 | GCTCCTGGTAGTTCGTACAACT | 59.769 | 50.000 | 13.01 | 13.01 | 32.62 | 3.16 |
2114 | 2459 | 0.456221 | ATGTCGCTCCTGGTAGTTCG | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2245 | 2591 | 6.254281 | ACGTGATCTTCCAAAATGTTTAGG | 57.746 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2246 | 2592 | 7.802738 | TGTACGTGATCTTCCAAAATGTTTAG | 58.197 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2247 | 2593 | 7.731882 | TGTACGTGATCTTCCAAAATGTTTA | 57.268 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2252 | 2598 | 7.598493 | CCAAAAATGTACGTGATCTTCCAAAAT | 59.402 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2261 | 2608 | 6.102006 | TCGATTCCAAAAATGTACGTGATC | 57.898 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
2263 | 2610 | 5.639931 | TCATCGATTCCAAAAATGTACGTGA | 59.360 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.