Multiple sequence alignment - TraesCS7B01G215700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G215700 chr7B 100.000 3965 0 0 1 3965 395592397 395588433 0.000000e+00 7323.0
1 TraesCS7B01G215700 chr7B 98.889 360 4 0 1 360 395600409 395600050 0.000000e+00 643.0
2 TraesCS7B01G215700 chr7B 91.429 175 12 2 358 532 731968495 731968666 1.840000e-58 237.0
3 TraesCS7B01G215700 chr7A 92.557 2875 128 48 619 3449 449336715 449333883 0.000000e+00 4045.0
4 TraesCS7B01G215700 chr7A 89.172 471 32 8 3482 3943 449333882 449333422 1.600000e-158 569.0
5 TraesCS7B01G215700 chr7A 88.976 254 26 2 1747 1999 193577705 193577957 2.970000e-81 313.0
6 TraesCS7B01G215700 chr7A 88.166 169 11 6 2748 2907 193577959 193578127 4.040000e-45 193.0
7 TraesCS7B01G215700 chr7A 88.811 143 16 0 3630 3772 449326841 449326699 4.070000e-40 176.0
8 TraesCS7B01G215700 chr7D 92.959 2812 100 35 607 3387 395877833 395875089 0.000000e+00 4006.0
9 TraesCS7B01G215700 chr7D 95.100 449 18 3 3497 3943 395874989 395874543 0.000000e+00 704.0
10 TraesCS7B01G215700 chr7D 91.316 380 32 1 1632 2011 403215685 403215307 5.870000e-143 518.0
11 TraesCS7B01G215700 chr7D 89.412 170 9 6 2747 2907 403215318 403215149 5.190000e-49 206.0
12 TraesCS7B01G215700 chr7D 87.179 156 19 1 3630 3784 395851138 395850983 4.070000e-40 176.0
13 TraesCS7B01G215700 chr3B 98.599 357 5 0 1 357 748305718 748305362 2.010000e-177 632.0
14 TraesCS7B01G215700 chr3B 98.056 360 7 0 1 360 373938958 373938599 9.350000e-176 627.0
15 TraesCS7B01G215700 chr3B 98.319 357 6 0 1 357 406623062 406623418 9.350000e-176 627.0
16 TraesCS7B01G215700 chr3B 91.329 173 11 2 358 530 526777810 526777642 2.380000e-57 233.0
17 TraesCS7B01G215700 chr3B 91.279 172 12 2 358 529 188866204 188866036 8.570000e-57 231.0
18 TraesCS7B01G215700 chr3B 96.739 92 3 0 528 619 657644053 657643962 1.910000e-33 154.0
19 TraesCS7B01G215700 chr3B 91.837 98 6 2 528 624 194755359 194755263 6.910000e-28 135.0
20 TraesCS7B01G215700 chr1B 98.324 358 6 0 1 358 353594488 353594845 2.600000e-176 628.0
21 TraesCS7B01G215700 chr1B 98.324 358 6 0 1 358 353597708 353598065 2.600000e-176 628.0
22 TraesCS7B01G215700 chr1B 96.471 85 3 0 528 612 29727357 29727441 1.490000e-29 141.0
23 TraesCS7B01G215700 chr1B 92.632 95 4 3 528 621 615614493 615614401 2.490000e-27 134.0
24 TraesCS7B01G215700 chr3A 98.050 359 7 0 1 359 172116576 172116934 3.360000e-175 625.0
25 TraesCS7B01G215700 chr6B 98.045 358 7 0 1 358 339568730 339569087 1.210000e-174 623.0
26 TraesCS7B01G215700 chr6B 97.283 368 9 1 1 367 382991511 382991144 1.210000e-174 623.0
27 TraesCS7B01G215700 chr6B 90.000 190 13 6 358 547 164824383 164824200 1.420000e-59 241.0
28 TraesCS7B01G215700 chr3D 92.632 380 27 1 1632 2011 281330674 281330296 2.690000e-151 545.0
29 TraesCS7B01G215700 chr3D 90.526 380 35 1 1632 2011 187444 187066 5.920000e-138 501.0
30 TraesCS7B01G215700 chr3D 89.412 170 9 6 2747 2907 281330307 281330138 5.190000e-49 206.0
31 TraesCS7B01G215700 chr3D 87.647 170 12 6 2747 2907 187077 186908 5.230000e-44 189.0
32 TraesCS7B01G215700 chr3D 95.556 90 3 1 528 616 553310280 553310191 4.130000e-30 143.0
33 TraesCS7B01G215700 chr4A 91.053 380 34 0 1632 2011 599904475 599904096 7.600000e-142 514.0
34 TraesCS7B01G215700 chr4A 88.235 170 11 6 2747 2907 599904107 599903938 1.120000e-45 195.0
35 TraesCS7B01G215700 chr2A 90.078 383 37 1 1629 2011 426711502 426711883 2.750000e-136 496.0
36 TraesCS7B01G215700 chr2A 87.647 170 12 6 2747 2907 426711872 426712041 5.230000e-44 189.0
37 TraesCS7B01G215700 chr2A 93.750 64 4 0 1629 1692 734549158 734549221 3.260000e-16 97.1
38 TraesCS7B01G215700 chr5A 91.592 333 26 2 1633 1964 426932060 426931729 3.610000e-125 459.0
39 TraesCS7B01G215700 chr5A 91.765 170 11 2 358 527 691051098 691051264 2.380000e-57 233.0
40 TraesCS7B01G215700 chr5A 91.279 172 11 3 358 529 662733212 662733045 8.570000e-57 231.0
41 TraesCS7B01G215700 chr5D 90.881 329 29 1 1683 2011 119466672 119466345 1.310000e-119 440.0
42 TraesCS7B01G215700 chr5D 88.235 170 11 6 2747 2907 119466356 119466187 1.120000e-45 195.0
43 TraesCS7B01G215700 chr5D 95.402 87 3 1 528 614 326576393 326576478 1.920000e-28 137.0
44 TraesCS7B01G215700 chr2B 94.152 171 10 0 358 528 496553102 496553272 1.090000e-65 261.0
45 TraesCS7B01G215700 chr2B 95.349 86 4 0 528 613 476931854 476931769 1.920000e-28 137.0
46 TraesCS7B01G215700 chr6A 91.860 172 11 1 358 529 57686234 57686066 1.840000e-58 237.0
47 TraesCS7B01G215700 chr6A 90.286 175 15 2 358 531 58307448 58307275 1.110000e-55 228.0
48 TraesCS7B01G215700 chr4B 96.429 84 3 0 528 611 611495535 611495452 5.340000e-29 139.0
49 TraesCS7B01G215700 chr1D 95.402 87 3 1 528 614 341064783 341064698 1.920000e-28 137.0
50 TraesCS7B01G215700 chr5B 95.385 65 3 0 2843 2907 166651176 166651112 1.950000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G215700 chr7B 395588433 395592397 3964 True 7323.0 7323 100.0000 1 3965 1 chr7B.!!$R1 3964
1 TraesCS7B01G215700 chr7A 449333422 449336715 3293 True 2307.0 4045 90.8645 619 3943 2 chr7A.!!$R2 3324
2 TraesCS7B01G215700 chr7D 395874543 395877833 3290 True 2355.0 4006 94.0295 607 3943 2 chr7D.!!$R2 3336
3 TraesCS7B01G215700 chr7D 403215149 403215685 536 True 362.0 518 90.3640 1632 2907 2 chr7D.!!$R3 1275
4 TraesCS7B01G215700 chr1B 353594488 353598065 3577 False 628.0 628 98.3240 1 358 2 chr1B.!!$F2 357
5 TraesCS7B01G215700 chr3D 281330138 281330674 536 True 375.5 545 91.0220 1632 2907 2 chr3D.!!$R3 1275
6 TraesCS7B01G215700 chr3D 186908 187444 536 True 345.0 501 89.0865 1632 2907 2 chr3D.!!$R2 1275
7 TraesCS7B01G215700 chr4A 599903938 599904475 537 True 354.5 514 89.6440 1632 2907 2 chr4A.!!$R1 1275
8 TraesCS7B01G215700 chr2A 426711502 426712041 539 False 342.5 496 88.8625 1629 2907 2 chr2A.!!$F2 1278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.102481 ATCGAGGGCGTCACATGTAC 59.898 55.0 8.06 0.00 38.98 2.90 F
363 364 0.179111 CGAGGGCGTCACATGTACAT 60.179 55.0 1.41 1.41 0.00 2.29 F
1257 2152 0.105760 TGGTTGGTTGCTTGGATGGT 60.106 50.0 0.00 0.00 0.00 3.55 F
2797 4442 0.179089 CAGTGGCTGAGGAAGATCCG 60.179 60.0 0.00 0.00 42.75 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 2140 0.178995 TGAGCACACCATCCAAGCAA 60.179 50.000 0.00 0.0 0.00 3.91 R
1530 2425 0.615827 GAAATGCTGCCCCTTTCCCT 60.616 55.000 0.00 0.0 0.00 4.20 R
2815 4469 0.826715 CTGCTTCTTCCTGATCCCGA 59.173 55.000 0.00 0.0 0.00 5.14 R
3607 6369 2.154462 AGTCAGGAGCAACCAAATTCG 58.846 47.619 2.96 0.0 42.04 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
358 359 0.460109 TGAATCGAGGGCGTCACATG 60.460 55.000 8.06 0.00 38.98 3.21
360 361 0.821517 AATCGAGGGCGTCACATGTA 59.178 50.000 8.06 0.00 38.98 2.29
361 362 0.102481 ATCGAGGGCGTCACATGTAC 59.898 55.000 8.06 0.00 38.98 2.90
362 363 1.214325 CGAGGGCGTCACATGTACA 59.786 57.895 8.06 0.00 0.00 2.90
363 364 0.179111 CGAGGGCGTCACATGTACAT 60.179 55.000 1.41 1.41 0.00 2.29
364 365 1.290203 GAGGGCGTCACATGTACATG 58.710 55.000 29.97 29.97 44.15 3.21
365 366 0.901827 AGGGCGTCACATGTACATGA 59.098 50.000 36.36 17.92 41.20 3.07
366 367 1.134699 AGGGCGTCACATGTACATGAG 60.135 52.381 36.36 29.47 41.20 2.90
367 368 1.290203 GGCGTCACATGTACATGAGG 58.710 55.000 36.36 27.01 41.20 3.86
368 369 1.290203 GCGTCACATGTACATGAGGG 58.710 55.000 36.36 24.92 41.20 4.30
369 370 1.939974 CGTCACATGTACATGAGGGG 58.060 55.000 36.36 22.85 41.20 4.79
370 371 1.480545 CGTCACATGTACATGAGGGGA 59.519 52.381 36.36 24.36 41.20 4.81
371 372 2.738643 CGTCACATGTACATGAGGGGAC 60.739 54.545 36.36 30.11 41.20 4.46
372 373 1.837439 TCACATGTACATGAGGGGACC 59.163 52.381 36.36 0.00 45.76 4.46
386 387 2.920724 GGGACCTCTCCTTATTGAGC 57.079 55.000 0.00 0.00 36.68 4.26
387 388 2.403561 GGGACCTCTCCTTATTGAGCT 58.596 52.381 0.00 0.00 36.68 4.09
388 389 3.577919 GGGACCTCTCCTTATTGAGCTA 58.422 50.000 0.00 0.00 36.68 3.32
389 390 4.164204 GGGACCTCTCCTTATTGAGCTAT 58.836 47.826 0.00 0.00 36.68 2.97
390 391 4.020662 GGGACCTCTCCTTATTGAGCTATG 60.021 50.000 0.00 0.00 36.68 2.23
391 392 4.020662 GGACCTCTCCTTATTGAGCTATGG 60.021 50.000 0.00 0.00 33.07 2.74
392 393 3.906846 ACCTCTCCTTATTGAGCTATGGG 59.093 47.826 0.00 0.00 32.22 4.00
393 394 3.307339 CCTCTCCTTATTGAGCTATGGGC 60.307 52.174 0.00 0.00 42.19 5.36
430 431 8.891367 AAAAAGAAACTGAACGTTCTTCTTAC 57.109 30.769 29.27 17.86 33.63 2.34
431 432 7.845066 AAAGAAACTGAACGTTCTTCTTACT 57.155 32.000 29.27 19.24 33.63 2.24
432 433 7.845066 AAGAAACTGAACGTTCTTCTTACTT 57.155 32.000 28.55 21.85 33.22 2.24
433 434 8.937634 AAGAAACTGAACGTTCTTCTTACTTA 57.062 30.769 28.55 9.68 33.22 2.24
434 435 8.350238 AGAAACTGAACGTTCTTCTTACTTAC 57.650 34.615 27.32 9.59 33.90 2.34
435 436 7.437565 AGAAACTGAACGTTCTTCTTACTTACC 59.562 37.037 27.32 6.40 33.90 2.85
436 437 6.152932 ACTGAACGTTCTTCTTACTTACCA 57.847 37.500 27.32 3.76 0.00 3.25
437 438 6.214399 ACTGAACGTTCTTCTTACTTACCAG 58.786 40.000 27.32 14.88 0.00 4.00
438 439 6.152932 TGAACGTTCTTCTTACTTACCAGT 57.847 37.500 27.32 0.00 36.99 4.00
439 440 5.981315 TGAACGTTCTTCTTACTTACCAGTG 59.019 40.000 27.32 0.00 34.06 3.66
440 441 4.879598 ACGTTCTTCTTACTTACCAGTGG 58.120 43.478 7.91 7.91 34.06 4.00
441 442 3.678548 CGTTCTTCTTACTTACCAGTGGC 59.321 47.826 9.78 0.00 34.06 5.01
442 443 4.638304 GTTCTTCTTACTTACCAGTGGCA 58.362 43.478 9.78 0.00 34.06 4.92
443 444 5.246307 GTTCTTCTTACTTACCAGTGGCAT 58.754 41.667 9.78 0.00 34.06 4.40
444 445 5.499004 TCTTCTTACTTACCAGTGGCATT 57.501 39.130 9.78 0.00 34.06 3.56
445 446 5.245531 TCTTCTTACTTACCAGTGGCATTG 58.754 41.667 9.78 2.55 34.06 2.82
446 447 3.950397 TCTTACTTACCAGTGGCATTGG 58.050 45.455 25.63 25.63 41.60 3.16
450 451 2.118076 ACCAGTGGCATTGGTGGG 59.882 61.111 30.95 8.17 46.85 4.61
451 452 2.118076 CCAGTGGCATTGGTGGGT 59.882 61.111 20.02 0.00 0.00 4.51
452 453 1.382240 CCAGTGGCATTGGTGGGTA 59.618 57.895 20.02 0.00 0.00 3.69
453 454 0.251564 CCAGTGGCATTGGTGGGTAA 60.252 55.000 20.02 0.00 0.00 2.85
454 455 1.619432 CCAGTGGCATTGGTGGGTAAT 60.619 52.381 20.02 0.00 0.00 1.89
455 456 2.178580 CAGTGGCATTGGTGGGTAATT 58.821 47.619 1.44 0.00 0.00 1.40
456 457 3.360867 CAGTGGCATTGGTGGGTAATTA 58.639 45.455 1.44 0.00 0.00 1.40
457 458 3.960102 CAGTGGCATTGGTGGGTAATTAT 59.040 43.478 1.44 0.00 0.00 1.28
458 459 4.405358 CAGTGGCATTGGTGGGTAATTATT 59.595 41.667 1.44 0.00 0.00 1.40
459 460 5.029474 AGTGGCATTGGTGGGTAATTATTT 58.971 37.500 0.00 0.00 0.00 1.40
460 461 5.104982 AGTGGCATTGGTGGGTAATTATTTG 60.105 40.000 0.00 0.00 0.00 2.32
461 462 4.126437 GGCATTGGTGGGTAATTATTTGC 58.874 43.478 0.00 0.00 0.00 3.68
462 463 4.383552 GGCATTGGTGGGTAATTATTTGCA 60.384 41.667 0.00 0.00 0.00 4.08
463 464 5.181748 GCATTGGTGGGTAATTATTTGCAA 58.818 37.500 0.00 0.00 0.00 4.08
464 465 5.064579 GCATTGGTGGGTAATTATTTGCAAC 59.935 40.000 0.00 0.00 0.00 4.17
465 466 6.405538 CATTGGTGGGTAATTATTTGCAACT 58.594 36.000 0.00 0.00 0.00 3.16
466 467 6.426646 TTGGTGGGTAATTATTTGCAACTT 57.573 33.333 0.00 0.00 0.00 2.66
467 468 6.426646 TGGTGGGTAATTATTTGCAACTTT 57.573 33.333 0.00 0.00 0.00 2.66
468 469 7.540474 TGGTGGGTAATTATTTGCAACTTTA 57.460 32.000 0.00 0.00 0.00 1.85
469 470 7.607250 TGGTGGGTAATTATTTGCAACTTTAG 58.393 34.615 0.00 0.00 0.00 1.85
470 471 7.039270 GGTGGGTAATTATTTGCAACTTTAGG 58.961 38.462 0.00 0.00 0.00 2.69
471 472 7.039270 GTGGGTAATTATTTGCAACTTTAGGG 58.961 38.462 0.00 0.00 0.00 3.53
472 473 6.155393 TGGGTAATTATTTGCAACTTTAGGGG 59.845 38.462 0.00 0.00 0.00 4.79
473 474 6.046593 GGTAATTATTTGCAACTTTAGGGGC 58.953 40.000 0.00 0.00 0.00 5.80
474 475 5.753721 AATTATTTGCAACTTTAGGGGCA 57.246 34.783 0.00 0.00 0.00 5.36
475 476 4.799564 TTATTTGCAACTTTAGGGGCAG 57.200 40.909 0.00 0.00 37.59 4.85
476 477 2.080654 TTTGCAACTTTAGGGGCAGT 57.919 45.000 0.00 0.00 37.59 4.40
477 478 2.080654 TTGCAACTTTAGGGGCAGTT 57.919 45.000 0.00 0.00 37.59 3.16
478 479 2.080654 TGCAACTTTAGGGGCAGTTT 57.919 45.000 0.00 0.00 30.48 2.66
479 480 2.393646 TGCAACTTTAGGGGCAGTTTT 58.606 42.857 0.00 0.00 30.48 2.43
480 481 3.567397 TGCAACTTTAGGGGCAGTTTTA 58.433 40.909 0.00 0.00 30.48 1.52
481 482 3.961408 TGCAACTTTAGGGGCAGTTTTAA 59.039 39.130 0.00 0.00 30.48 1.52
482 483 4.591072 TGCAACTTTAGGGGCAGTTTTAAT 59.409 37.500 0.00 0.00 30.48 1.40
483 484 4.929211 GCAACTTTAGGGGCAGTTTTAATG 59.071 41.667 0.00 0.00 30.48 1.90
484 485 5.279256 GCAACTTTAGGGGCAGTTTTAATGA 60.279 40.000 0.00 0.00 30.48 2.57
485 486 5.977489 ACTTTAGGGGCAGTTTTAATGAC 57.023 39.130 0.00 0.00 0.00 3.06
486 487 4.457949 ACTTTAGGGGCAGTTTTAATGACG 59.542 41.667 0.00 0.00 0.00 4.35
487 488 1.834188 AGGGGCAGTTTTAATGACGG 58.166 50.000 0.00 0.00 0.00 4.79
488 489 1.353022 AGGGGCAGTTTTAATGACGGA 59.647 47.619 0.00 0.00 0.00 4.69
489 490 1.471287 GGGGCAGTTTTAATGACGGAC 59.529 52.381 0.00 0.00 0.00 4.79
490 491 1.129811 GGGCAGTTTTAATGACGGACG 59.870 52.381 0.00 0.00 0.00 4.79
491 492 2.070783 GGCAGTTTTAATGACGGACGA 58.929 47.619 0.00 0.00 0.00 4.20
492 493 2.093783 GGCAGTTTTAATGACGGACGAG 59.906 50.000 0.00 0.00 0.00 4.18
493 494 2.991190 GCAGTTTTAATGACGGACGAGA 59.009 45.455 0.00 0.00 0.00 4.04
494 495 3.430895 GCAGTTTTAATGACGGACGAGAA 59.569 43.478 0.00 0.00 0.00 2.87
495 496 4.434330 GCAGTTTTAATGACGGACGAGAAG 60.434 45.833 0.00 0.00 0.00 2.85
496 497 4.921515 CAGTTTTAATGACGGACGAGAAGA 59.078 41.667 0.00 0.00 0.00 2.87
497 498 5.404366 CAGTTTTAATGACGGACGAGAAGAA 59.596 40.000 0.00 0.00 0.00 2.52
498 499 5.634020 AGTTTTAATGACGGACGAGAAGAAG 59.366 40.000 0.00 0.00 0.00 2.85
499 500 1.997669 AATGACGGACGAGAAGAAGC 58.002 50.000 0.00 0.00 0.00 3.86
500 501 0.888619 ATGACGGACGAGAAGAAGCA 59.111 50.000 0.00 0.00 0.00 3.91
501 502 0.671796 TGACGGACGAGAAGAAGCAA 59.328 50.000 0.00 0.00 0.00 3.91
502 503 1.272490 TGACGGACGAGAAGAAGCAAT 59.728 47.619 0.00 0.00 0.00 3.56
503 504 2.490509 TGACGGACGAGAAGAAGCAATA 59.509 45.455 0.00 0.00 0.00 1.90
504 505 3.109619 GACGGACGAGAAGAAGCAATAG 58.890 50.000 0.00 0.00 0.00 1.73
505 506 1.855360 CGGACGAGAAGAAGCAATAGC 59.145 52.381 0.00 0.00 42.56 2.97
506 507 2.205911 GGACGAGAAGAAGCAATAGCC 58.794 52.381 0.00 0.00 43.56 3.93
507 508 1.855360 GACGAGAAGAAGCAATAGCCG 59.145 52.381 0.00 0.00 43.56 5.52
508 509 1.204941 ACGAGAAGAAGCAATAGCCGT 59.795 47.619 0.00 0.00 43.56 5.68
509 510 2.271800 CGAGAAGAAGCAATAGCCGTT 58.728 47.619 0.00 0.00 43.56 4.44
510 511 2.673368 CGAGAAGAAGCAATAGCCGTTT 59.327 45.455 0.00 0.00 43.56 3.60
511 512 3.125316 CGAGAAGAAGCAATAGCCGTTTT 59.875 43.478 0.00 0.00 43.56 2.43
512 513 4.328983 CGAGAAGAAGCAATAGCCGTTTTA 59.671 41.667 0.00 0.00 43.56 1.52
513 514 5.006746 CGAGAAGAAGCAATAGCCGTTTTAT 59.993 40.000 0.00 0.00 43.56 1.40
514 515 6.456988 CGAGAAGAAGCAATAGCCGTTTTATT 60.457 38.462 0.00 0.00 43.56 1.40
515 516 7.254319 CGAGAAGAAGCAATAGCCGTTTTATTA 60.254 37.037 0.00 0.00 43.56 0.98
516 517 7.920738 AGAAGAAGCAATAGCCGTTTTATTAG 58.079 34.615 0.00 0.00 43.56 1.73
517 518 7.553044 AGAAGAAGCAATAGCCGTTTTATTAGT 59.447 33.333 0.00 0.00 43.56 2.24
518 519 8.726870 AAGAAGCAATAGCCGTTTTATTAGTA 57.273 30.769 0.00 0.00 43.56 1.82
519 520 8.366671 AGAAGCAATAGCCGTTTTATTAGTAG 57.633 34.615 0.00 0.00 43.56 2.57
520 521 7.441458 AGAAGCAATAGCCGTTTTATTAGTAGG 59.559 37.037 0.00 0.00 43.56 3.18
521 522 6.589135 AGCAATAGCCGTTTTATTAGTAGGT 58.411 36.000 0.00 0.00 43.56 3.08
522 523 7.729116 AGCAATAGCCGTTTTATTAGTAGGTA 58.271 34.615 0.00 0.00 43.56 3.08
523 524 8.206189 AGCAATAGCCGTTTTATTAGTAGGTAA 58.794 33.333 0.00 0.00 43.56 2.85
524 525 8.829612 GCAATAGCCGTTTTATTAGTAGGTAAA 58.170 33.333 0.00 0.00 33.58 2.01
541 542 9.469097 AGTAGGTAAAGATATGCACTATAGAGG 57.531 37.037 6.78 0.00 0.00 3.69
542 543 9.245481 GTAGGTAAAGATATGCACTATAGAGGT 57.755 37.037 6.78 0.00 0.00 3.85
544 545 9.469097 AGGTAAAGATATGCACTATAGAGGTAG 57.531 37.037 6.78 0.00 0.00 3.18
545 546 9.245481 GGTAAAGATATGCACTATAGAGGTAGT 57.755 37.037 6.78 0.00 35.34 2.73
554 555 8.563123 TGCACTATAGAGGTAGTATCATACAC 57.437 38.462 6.78 0.00 33.29 2.90
555 556 8.383947 TGCACTATAGAGGTAGTATCATACACT 58.616 37.037 6.78 0.00 33.29 3.55
556 557 9.887629 GCACTATAGAGGTAGTATCATACACTA 57.112 37.037 6.78 0.00 33.29 2.74
591 1437 7.042335 GCATGATACTGGTATATGTTACTCCC 58.958 42.308 0.00 0.00 0.00 4.30
592 1438 7.556844 CATGATACTGGTATATGTTACTCCCC 58.443 42.308 0.00 0.00 0.00 4.81
593 1439 6.626238 TGATACTGGTATATGTTACTCCCCA 58.374 40.000 0.00 0.00 0.00 4.96
594 1440 6.495872 TGATACTGGTATATGTTACTCCCCAC 59.504 42.308 0.00 0.00 0.00 4.61
595 1441 4.892198 ACTGGTATATGTTACTCCCCACT 58.108 43.478 0.00 0.00 0.00 4.00
596 1442 6.034442 ACTGGTATATGTTACTCCCCACTA 57.966 41.667 0.00 0.00 0.00 2.74
597 1443 6.631107 ACTGGTATATGTTACTCCCCACTAT 58.369 40.000 0.00 0.00 0.00 2.12
598 1444 6.497259 ACTGGTATATGTTACTCCCCACTATG 59.503 42.308 0.00 0.00 0.00 2.23
599 1445 6.626238 TGGTATATGTTACTCCCCACTATGA 58.374 40.000 0.00 0.00 0.00 2.15
600 1446 6.495872 TGGTATATGTTACTCCCCACTATGAC 59.504 42.308 0.00 0.00 0.00 3.06
603 1449 3.104512 TGTTACTCCCCACTATGACCAG 58.895 50.000 0.00 0.00 0.00 4.00
604 1450 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
605 1451 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
606 1452 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
607 1453 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
608 1454 1.009060 TCCCCACTATGACCAGCCTTA 59.991 52.381 0.00 0.00 0.00 2.69
609 1455 1.141053 CCCCACTATGACCAGCCTTAC 59.859 57.143 0.00 0.00 0.00 2.34
610 1456 1.837439 CCCACTATGACCAGCCTTACA 59.163 52.381 0.00 0.00 0.00 2.41
611 1457 2.158900 CCCACTATGACCAGCCTTACAG 60.159 54.545 0.00 0.00 0.00 2.74
612 1458 2.501723 CCACTATGACCAGCCTTACAGT 59.498 50.000 0.00 0.00 0.00 3.55
613 1459 3.704566 CCACTATGACCAGCCTTACAGTA 59.295 47.826 0.00 0.00 0.00 2.74
614 1460 4.441634 CCACTATGACCAGCCTTACAGTAC 60.442 50.000 0.00 0.00 0.00 2.73
615 1461 4.402793 CACTATGACCAGCCTTACAGTACT 59.597 45.833 0.00 0.00 0.00 2.73
617 1463 3.955650 TGACCAGCCTTACAGTACTTC 57.044 47.619 0.00 0.00 0.00 3.01
624 1470 5.194432 CAGCCTTACAGTACTTCTAGGAGA 58.806 45.833 4.59 0.00 0.00 3.71
641 1487 3.007398 AGGAGAGTAAGCAGAACACCAAG 59.993 47.826 0.00 0.00 0.00 3.61
642 1488 3.244249 GGAGAGTAAGCAGAACACCAAGT 60.244 47.826 0.00 0.00 0.00 3.16
644 1490 4.781934 AGAGTAAGCAGAACACCAAGTTT 58.218 39.130 0.00 0.00 41.51 2.66
664 1514 6.396450 AGTTTTAAAAACTGCCGTTTGGTTA 58.604 32.000 7.03 0.98 42.28 2.85
697 1552 2.174363 AAGGGAATTTGCAAGCAAGC 57.826 45.000 7.60 2.32 37.24 4.01
698 1553 1.050204 AGGGAATTTGCAAGCAAGCA 58.950 45.000 7.60 0.00 43.99 3.91
709 1564 0.312102 AAGCAAGCAAGCGAAGGAAC 59.688 50.000 0.00 0.00 40.15 3.62
711 1566 1.207593 CAAGCAAGCGAAGGAACGG 59.792 57.895 0.00 0.00 0.00 4.44
794 1659 3.775654 CACCGCCTCCACCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
921 1790 1.753368 GATCCCTCCCAAGCTCCTCG 61.753 65.000 0.00 0.00 0.00 4.63
922 1791 3.474570 CCCTCCCAAGCTCCTCGG 61.475 72.222 0.00 0.00 0.00 4.63
1199 2094 1.300697 GTCCAGGTGTGTGTCCGAC 60.301 63.158 0.00 0.00 0.00 4.79
1202 2097 2.836360 AGGTGTGTGTCCGACCGT 60.836 61.111 0.00 0.00 34.72 4.83
1204 2099 2.728383 GTGTGTGTCCGACCGTCG 60.728 66.667 14.15 14.15 40.07 5.12
1205 2100 2.901339 TGTGTGTCCGACCGTCGA 60.901 61.111 22.40 5.79 43.74 4.20
1207 2102 4.034258 TGTGTCCGACCGTCGAGC 62.034 66.667 22.40 13.87 43.74 5.03
1208 2103 3.735029 GTGTCCGACCGTCGAGCT 61.735 66.667 22.40 0.00 43.74 4.09
1209 2104 3.429141 TGTCCGACCGTCGAGCTC 61.429 66.667 22.40 2.73 43.74 4.09
1210 2105 4.176851 GTCCGACCGTCGAGCTCC 62.177 72.222 22.40 1.54 43.74 4.70
1215 2110 2.035940 ACCGTCGAGCTCCTCCTT 59.964 61.111 8.47 0.00 0.00 3.36
1216 2111 1.596895 GACCGTCGAGCTCCTCCTTT 61.597 60.000 8.47 0.00 0.00 3.11
1218 2113 1.153745 CGTCGAGCTCCTCCTTTGG 60.154 63.158 8.47 0.00 0.00 3.28
1222 2117 3.689002 GAGCTCCTCCTTTGGCCGG 62.689 68.421 0.87 0.00 0.00 6.13
1245 2140 3.284449 GGCGCGTTCTTGGTTGGT 61.284 61.111 8.43 0.00 0.00 3.67
1257 2152 0.105760 TGGTTGGTTGCTTGGATGGT 60.106 50.000 0.00 0.00 0.00 3.55
1335 2230 3.382832 CTCGAGGCGGTCCAGGTT 61.383 66.667 3.91 0.00 33.74 3.50
1478 2373 0.399949 TACATCCAGCAGGTAGGGGG 60.400 60.000 0.00 0.00 35.89 5.40
1505 2400 5.914085 TTCTTCTCTTTCTCGCTTTCTTG 57.086 39.130 0.00 0.00 0.00 3.02
1510 2405 1.603802 CTTTCTCGCTTTCTTGGCACA 59.396 47.619 0.00 0.00 0.00 4.57
1511 2406 1.229428 TTCTCGCTTTCTTGGCACAG 58.771 50.000 0.00 0.00 42.39 3.66
1514 2409 2.429739 GCTTTCTTGGCACAGCGC 60.430 61.111 0.00 0.00 42.39 5.92
1597 2495 0.754217 CTATCGGGACCTGGAACGGA 60.754 60.000 0.00 2.92 36.31 4.69
1603 2501 3.292500 GACCTGGAACGGACCGTCC 62.293 68.421 22.00 21.75 39.99 4.79
1636 2534 2.173669 CGATGGGCTAACGGTGCTG 61.174 63.158 0.00 0.00 0.00 4.41
1959 2858 2.032071 CGCGTTCCCAACTCCCTT 59.968 61.111 0.00 0.00 0.00 3.95
2035 2934 3.435186 GACCGCCCAAAGCTGCTC 61.435 66.667 1.00 0.00 40.39 4.26
2044 2943 0.985549 CAAAGCTGCTCTACGACGTC 59.014 55.000 2.43 5.18 0.00 4.34
2104 3003 2.736995 ACCATCGACACCAACGCG 60.737 61.111 3.53 3.53 0.00 6.01
2138 3037 2.492088 CAGGAGTTCTACATCCGTCACA 59.508 50.000 0.00 0.00 40.73 3.58
2246 3145 3.243602 GGTACTTTCCACGCCAATTTTGT 60.244 43.478 0.00 0.00 0.00 2.83
2247 3146 4.023021 GGTACTTTCCACGCCAATTTTGTA 60.023 41.667 0.00 0.00 0.00 2.41
2248 3147 3.972403 ACTTTCCACGCCAATTTTGTAC 58.028 40.909 0.00 0.00 0.00 2.90
2249 3148 3.381908 ACTTTCCACGCCAATTTTGTACA 59.618 39.130 0.00 0.00 0.00 2.90
2289 3188 9.705103 TTCCTAAATCTTTCTCATTCATGGATT 57.295 29.630 0.00 0.00 0.00 3.01
2376 3275 1.373497 CTGCTGTCAGACGTCACCC 60.373 63.158 19.50 4.87 42.95 4.61
2701 3600 0.694771 TGCTCATGAGGCAGAAACCT 59.305 50.000 23.89 0.00 45.04 3.50
2702 3601 1.093159 GCTCATGAGGCAGAAACCTG 58.907 55.000 23.89 0.00 41.32 4.00
2712 3611 1.126846 GCAGAAACCTGACAACGATCG 59.873 52.381 14.88 14.88 33.56 3.69
2730 3629 3.317571 AGCCAGGCTCTGCTCGTT 61.318 61.111 8.70 0.00 30.62 3.85
2737 3636 2.970974 GCTCTGCTCGTTTGGGCAC 61.971 63.158 0.00 0.00 34.57 5.01
2797 4442 0.179089 CAGTGGCTGAGGAAGATCCG 60.179 60.000 0.00 0.00 42.75 4.18
2815 4469 0.035056 CGGGAAAGCAAGATCAGGGT 60.035 55.000 0.00 0.00 0.00 4.34
2862 5484 3.260884 TGGAACCTTAGCAGTAGACCAAG 59.739 47.826 0.00 0.00 0.00 3.61
2889 5515 4.649674 AGACATGTACATAAGTGGATCCGT 59.350 41.667 8.32 0.00 0.00 4.69
3184 5904 4.955811 TCAGACCAAATGTGTCTAGTGT 57.044 40.909 0.00 0.00 41.02 3.55
3185 5905 4.631131 TCAGACCAAATGTGTCTAGTGTG 58.369 43.478 0.00 0.00 41.02 3.82
3186 5906 4.100963 TCAGACCAAATGTGTCTAGTGTGT 59.899 41.667 0.00 0.00 41.02 3.72
3188 5908 4.100963 AGACCAAATGTGTCTAGTGTGTCA 59.899 41.667 0.00 0.00 41.17 3.58
3189 5909 4.127171 ACCAAATGTGTCTAGTGTGTCAC 58.873 43.478 0.00 0.00 34.10 3.67
3203 5926 9.607988 TCTAGTGTGTCACTTTTTCTTCAATTA 57.392 29.630 7.70 0.00 42.59 1.40
3266 5989 1.000938 CAGGAGAAACAAGGTGCTTGC 60.001 52.381 0.00 0.00 44.43 4.01
3353 6076 3.754323 CCGTTTGTAGGAGGTTGCAATTA 59.246 43.478 0.59 0.00 0.00 1.40
3387 6110 2.412770 GCTACACATGCACAAAATTGCC 59.587 45.455 0.00 0.00 42.25 4.52
3388 6111 2.616634 ACACATGCACAAAATTGCCA 57.383 40.000 0.00 0.00 42.25 4.92
3389 6112 3.128852 ACACATGCACAAAATTGCCAT 57.871 38.095 0.00 0.00 42.25 4.40
3390 6113 4.268797 ACACATGCACAAAATTGCCATA 57.731 36.364 0.00 0.00 42.25 2.74
3391 6114 4.639334 ACACATGCACAAAATTGCCATAA 58.361 34.783 0.00 0.00 42.25 1.90
3392 6115 4.451774 ACACATGCACAAAATTGCCATAAC 59.548 37.500 0.00 0.00 42.25 1.89
3393 6116 4.451435 CACATGCACAAAATTGCCATAACA 59.549 37.500 0.00 0.00 42.25 2.41
3394 6117 5.049612 CACATGCACAAAATTGCCATAACAA 60.050 36.000 0.00 0.00 42.25 2.83
3395 6118 5.179742 ACATGCACAAAATTGCCATAACAAG 59.820 36.000 0.00 0.00 42.25 3.16
3397 6120 5.549347 TGCACAAAATTGCCATAACAAGAT 58.451 33.333 0.00 0.00 42.25 2.40
3398 6121 6.695429 TGCACAAAATTGCCATAACAAGATA 58.305 32.000 0.00 0.00 42.25 1.98
3408 6131 6.846988 TGCCATAACAAGATATATGTCCCAA 58.153 36.000 0.00 0.00 0.00 4.12
3434 6157 9.675464 ACTACTACTAGCCATATTAGAGTGATC 57.325 37.037 0.00 0.00 0.00 2.92
3446 6169 3.540314 AGAGTGATCAATGAGGAGTGC 57.460 47.619 0.00 0.00 0.00 4.40
3451 6174 5.121811 AGTGATCAATGAGGAGTGCATTAC 58.878 41.667 0.00 0.00 34.41 1.89
3452 6175 4.877823 GTGATCAATGAGGAGTGCATTACA 59.122 41.667 0.00 0.00 34.41 2.41
3467 6190 7.564044 GTGCATTACACTCCTACGATATAAC 57.436 40.000 0.00 0.00 46.41 1.89
3468 6191 6.304922 GTGCATTACACTCCTACGATATAACG 59.695 42.308 0.27 0.27 46.41 3.18
3469 6192 6.205270 TGCATTACACTCCTACGATATAACGA 59.795 38.462 9.58 0.00 37.03 3.85
3470 6193 6.741811 GCATTACACTCCTACGATATAACGAG 59.258 42.308 9.58 2.72 37.03 4.18
3471 6194 7.360691 GCATTACACTCCTACGATATAACGAGA 60.361 40.741 9.58 2.52 37.03 4.04
3472 6195 7.649370 TTACACTCCTACGATATAACGAGAG 57.351 40.000 9.58 12.98 35.98 3.20
3473 6196 4.451774 ACACTCCTACGATATAACGAGAGC 59.548 45.833 9.58 0.00 34.62 4.09
3474 6197 4.002316 ACTCCTACGATATAACGAGAGCC 58.998 47.826 9.58 0.00 34.62 4.70
3475 6198 4.001652 CTCCTACGATATAACGAGAGCCA 58.998 47.826 9.58 0.00 37.03 4.75
3493 6216 1.001641 ATGGGGCTTGACAGAGCAC 60.002 57.895 10.45 7.39 45.40 4.40
3495 6218 4.730487 GGGCTTGACAGAGCACAT 57.270 55.556 10.45 0.00 45.45 3.21
3500 6223 2.357009 GGCTTGACAGAGCACATAATGG 59.643 50.000 10.45 0.00 44.49 3.16
3503 6226 2.195727 TGACAGAGCACATAATGGGGA 58.804 47.619 0.00 0.00 0.00 4.81
3515 6277 7.180051 AGCACATAATGGGGAAAATACAAGAAA 59.820 33.333 0.00 0.00 0.00 2.52
3544 6306 9.790344 AGCAGTAAGAATTTATCAGCAGATTAT 57.210 29.630 0.00 0.00 35.67 1.28
3607 6369 2.159517 CGAAGAGCATGGGCAAGTAAAC 60.160 50.000 0.00 0.00 44.61 2.01
3626 6388 1.880027 ACGAATTTGGTTGCTCCTGAC 59.120 47.619 0.00 0.00 37.07 3.51
3717 6486 4.035558 TGACACTGCAAAAAGCTACTCTTG 59.964 41.667 0.00 0.00 45.94 3.02
3822 6592 1.067250 CTTTGCCAAACCACCACCG 59.933 57.895 0.00 0.00 0.00 4.94
3823 6593 2.969677 CTTTGCCAAACCACCACCGC 62.970 60.000 0.00 0.00 0.00 5.68
3854 6624 5.163195 ACTCCAATCAAGTGTCAACTAACCT 60.163 40.000 0.00 0.00 34.77 3.50
3883 6654 2.283298 AGATGTTGATGATGCCACGTC 58.717 47.619 0.00 0.00 0.00 4.34
3943 6714 3.968265 ACAAATACCACCTGATTCCTGG 58.032 45.455 0.00 0.00 37.41 4.45
3944 6715 3.591527 ACAAATACCACCTGATTCCTGGA 59.408 43.478 0.00 0.00 35.58 3.86
3945 6716 4.202441 CAAATACCACCTGATTCCTGGAG 58.798 47.826 0.00 0.00 35.58 3.86
3946 6717 2.642171 TACCACCTGATTCCTGGAGT 57.358 50.000 0.00 0.00 35.58 3.85
3947 6718 2.642171 ACCACCTGATTCCTGGAGTA 57.358 50.000 0.00 0.00 35.58 2.59
3948 6719 3.136641 ACCACCTGATTCCTGGAGTAT 57.863 47.619 0.00 0.00 35.58 2.12
3949 6720 3.464828 ACCACCTGATTCCTGGAGTATT 58.535 45.455 0.00 0.00 35.58 1.89
3950 6721 3.852578 ACCACCTGATTCCTGGAGTATTT 59.147 43.478 0.00 0.00 35.58 1.40
3951 6722 5.036916 ACCACCTGATTCCTGGAGTATTTA 58.963 41.667 0.00 0.00 35.58 1.40
3952 6723 5.491078 ACCACCTGATTCCTGGAGTATTTAA 59.509 40.000 0.00 0.00 35.58 1.52
3953 6724 5.823045 CCACCTGATTCCTGGAGTATTTAAC 59.177 44.000 0.00 0.00 35.58 2.01
3954 6725 5.823045 CACCTGATTCCTGGAGTATTTAACC 59.177 44.000 0.00 0.00 35.58 2.85
3955 6726 5.491078 ACCTGATTCCTGGAGTATTTAACCA 59.509 40.000 0.00 0.00 35.58 3.67
3956 6727 6.011981 ACCTGATTCCTGGAGTATTTAACCAA 60.012 38.462 0.00 0.00 35.58 3.67
3957 6728 6.889722 CCTGATTCCTGGAGTATTTAACCAAA 59.110 38.462 0.00 0.00 33.65 3.28
3958 6729 7.396055 CCTGATTCCTGGAGTATTTAACCAAAA 59.604 37.037 0.00 0.00 33.65 2.44
3959 6730 8.713708 TGATTCCTGGAGTATTTAACCAAAAA 57.286 30.769 0.00 0.00 33.14 1.94
3960 6731 8.581578 TGATTCCTGGAGTATTTAACCAAAAAC 58.418 33.333 0.00 0.00 33.14 2.43
3961 6732 8.721133 ATTCCTGGAGTATTTAACCAAAAACT 57.279 30.769 0.00 0.00 33.14 2.66
3962 6733 9.816787 ATTCCTGGAGTATTTAACCAAAAACTA 57.183 29.630 0.00 0.00 33.14 2.24
3963 6734 8.625786 TCCTGGAGTATTTAACCAAAAACTAC 57.374 34.615 0.00 0.00 33.14 2.73
3964 6735 7.666804 TCCTGGAGTATTTAACCAAAAACTACC 59.333 37.037 0.00 0.00 33.14 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 171 4.496507 CGATCATAGACGAGTCAGCAGAAA 60.497 45.833 5.99 0.00 0.00 2.52
174 175 2.545946 CTCGATCATAGACGAGTCAGCA 59.454 50.000 5.99 0.00 46.90 4.41
280 281 0.978146 ATCAGGGACTCACGGGAAGG 60.978 60.000 0.00 0.00 34.60 3.46
346 347 0.901827 TCATGTACATGTGACGCCCT 59.098 50.000 30.03 0.00 39.72 5.19
365 366 2.961977 GCTCAATAAGGAGAGGTCCCCT 60.962 54.545 0.00 0.00 45.26 4.79
366 367 1.418264 GCTCAATAAGGAGAGGTCCCC 59.582 57.143 0.00 0.00 45.26 4.81
367 368 2.403561 AGCTCAATAAGGAGAGGTCCC 58.596 52.381 0.00 0.00 45.26 4.46
368 369 4.020662 CCATAGCTCAATAAGGAGAGGTCC 60.021 50.000 0.00 0.00 41.28 4.46
369 370 4.020662 CCCATAGCTCAATAAGGAGAGGTC 60.021 50.000 0.00 0.00 41.28 3.85
370 371 3.906846 CCCATAGCTCAATAAGGAGAGGT 59.093 47.826 0.00 0.00 44.08 3.85
371 372 3.307339 GCCCATAGCTCAATAAGGAGAGG 60.307 52.174 0.00 0.00 37.05 3.69
372 373 3.616076 CGCCCATAGCTCAATAAGGAGAG 60.616 52.174 0.00 0.00 40.39 3.20
373 374 2.300152 CGCCCATAGCTCAATAAGGAGA 59.700 50.000 0.00 0.00 40.39 3.71
374 375 2.300152 TCGCCCATAGCTCAATAAGGAG 59.700 50.000 0.00 0.00 40.39 3.69
375 376 2.300152 CTCGCCCATAGCTCAATAAGGA 59.700 50.000 0.00 0.00 40.39 3.36
376 377 2.693069 CTCGCCCATAGCTCAATAAGG 58.307 52.381 0.00 0.00 40.39 2.69
377 378 2.072298 GCTCGCCCATAGCTCAATAAG 58.928 52.381 0.00 0.00 40.39 1.73
378 379 1.605457 CGCTCGCCCATAGCTCAATAA 60.605 52.381 0.00 0.00 40.39 1.40
379 380 0.038251 CGCTCGCCCATAGCTCAATA 60.038 55.000 0.00 0.00 40.39 1.90
380 381 1.301244 CGCTCGCCCATAGCTCAAT 60.301 57.895 0.00 0.00 40.39 2.57
381 382 2.106938 CGCTCGCCCATAGCTCAA 59.893 61.111 0.00 0.00 40.39 3.02
382 383 4.592192 GCGCTCGCCCATAGCTCA 62.592 66.667 0.00 0.00 40.39 4.26
405 406 8.727910 AGTAAGAAGAACGTTCAGTTTCTTTTT 58.272 29.630 31.77 22.80 44.35 1.94
406 407 8.265165 AGTAAGAAGAACGTTCAGTTTCTTTT 57.735 30.769 31.77 23.02 44.35 2.27
407 408 7.845066 AGTAAGAAGAACGTTCAGTTTCTTT 57.155 32.000 31.77 20.62 44.35 2.52
408 409 7.845066 AAGTAAGAAGAACGTTCAGTTTCTT 57.155 32.000 30.49 30.49 44.35 2.52
409 410 7.437565 GGTAAGTAAGAAGAACGTTCAGTTTCT 59.562 37.037 28.78 23.76 44.35 2.52
410 411 7.223387 TGGTAAGTAAGAAGAACGTTCAGTTTC 59.777 37.037 28.78 22.10 44.35 2.78
411 412 7.043565 TGGTAAGTAAGAAGAACGTTCAGTTT 58.956 34.615 28.78 19.91 44.35 2.66
412 413 7.632245 ACTGGTAAGTAAGAAGAACGTTCAGTT 60.632 37.037 28.78 19.67 39.55 3.16
413 414 6.152932 TGGTAAGTAAGAAGAACGTTCAGT 57.847 37.500 28.78 16.80 0.00 3.41
414 415 6.144080 CACTGGTAAGTAAGAAGAACGTTCAG 59.856 42.308 28.78 15.46 33.79 3.02
415 416 5.981315 CACTGGTAAGTAAGAAGAACGTTCA 59.019 40.000 28.78 6.11 33.79 3.18
416 417 5.404667 CCACTGGTAAGTAAGAAGAACGTTC 59.595 44.000 20.71 20.71 33.79 3.95
417 418 5.295152 CCACTGGTAAGTAAGAAGAACGTT 58.705 41.667 0.00 0.00 33.79 3.99
418 419 4.798593 GCCACTGGTAAGTAAGAAGAACGT 60.799 45.833 0.00 0.00 33.79 3.99
419 420 3.678548 GCCACTGGTAAGTAAGAAGAACG 59.321 47.826 0.00 0.00 33.79 3.95
420 421 4.638304 TGCCACTGGTAAGTAAGAAGAAC 58.362 43.478 0.00 0.00 33.79 3.01
421 422 4.967084 TGCCACTGGTAAGTAAGAAGAA 57.033 40.909 0.00 0.00 33.79 2.52
422 423 5.245531 CAATGCCACTGGTAAGTAAGAAGA 58.754 41.667 0.00 0.00 33.79 2.87
423 424 4.396166 CCAATGCCACTGGTAAGTAAGAAG 59.604 45.833 0.00 0.00 33.79 2.85
424 425 4.202524 ACCAATGCCACTGGTAAGTAAGAA 60.203 41.667 0.00 0.00 45.58 2.52
425 426 3.329520 ACCAATGCCACTGGTAAGTAAGA 59.670 43.478 0.00 0.00 45.58 2.10
426 427 3.440173 CACCAATGCCACTGGTAAGTAAG 59.560 47.826 0.00 0.00 45.67 2.34
427 428 3.417101 CACCAATGCCACTGGTAAGTAA 58.583 45.455 0.00 0.00 45.67 2.24
428 429 2.290641 CCACCAATGCCACTGGTAAGTA 60.291 50.000 0.00 0.00 45.67 2.24
429 430 1.547675 CCACCAATGCCACTGGTAAGT 60.548 52.381 0.00 0.00 45.67 2.24
430 431 1.176527 CCACCAATGCCACTGGTAAG 58.823 55.000 0.00 0.00 45.67 2.34
431 432 0.251564 CCCACCAATGCCACTGGTAA 60.252 55.000 0.00 0.00 45.67 2.85
432 433 1.382240 CCCACCAATGCCACTGGTA 59.618 57.895 0.00 0.00 45.67 3.25
434 435 0.251564 TTACCCACCAATGCCACTGG 60.252 55.000 0.00 0.00 40.05 4.00
435 436 1.851304 ATTACCCACCAATGCCACTG 58.149 50.000 0.00 0.00 0.00 3.66
436 437 2.621556 AATTACCCACCAATGCCACT 57.378 45.000 0.00 0.00 0.00 4.00
437 438 5.115480 CAAATAATTACCCACCAATGCCAC 58.885 41.667 0.00 0.00 0.00 5.01
438 439 4.383552 GCAAATAATTACCCACCAATGCCA 60.384 41.667 0.00 0.00 0.00 4.92
439 440 4.126437 GCAAATAATTACCCACCAATGCC 58.874 43.478 0.00 0.00 0.00 4.40
440 441 4.764172 TGCAAATAATTACCCACCAATGC 58.236 39.130 0.00 0.00 0.00 3.56
441 442 6.405538 AGTTGCAAATAATTACCCACCAATG 58.594 36.000 0.00 0.00 0.00 2.82
442 443 6.619329 AGTTGCAAATAATTACCCACCAAT 57.381 33.333 0.00 0.00 0.00 3.16
443 444 6.426646 AAGTTGCAAATAATTACCCACCAA 57.573 33.333 0.00 0.00 0.00 3.67
444 445 6.426646 AAAGTTGCAAATAATTACCCACCA 57.573 33.333 0.00 0.00 0.00 4.17
445 446 7.039270 CCTAAAGTTGCAAATAATTACCCACC 58.961 38.462 0.00 0.00 0.00 4.61
446 447 7.039270 CCCTAAAGTTGCAAATAATTACCCAC 58.961 38.462 0.00 0.00 0.00 4.61
447 448 6.155393 CCCCTAAAGTTGCAAATAATTACCCA 59.845 38.462 0.00 0.00 0.00 4.51
448 449 6.578944 CCCCTAAAGTTGCAAATAATTACCC 58.421 40.000 0.00 0.00 0.00 3.69
449 450 6.046593 GCCCCTAAAGTTGCAAATAATTACC 58.953 40.000 0.00 0.00 0.00 2.85
450 451 6.635755 TGCCCCTAAAGTTGCAAATAATTAC 58.364 36.000 0.00 0.00 0.00 1.89
451 452 6.439058 ACTGCCCCTAAAGTTGCAAATAATTA 59.561 34.615 0.00 0.00 32.58 1.40
452 453 5.248248 ACTGCCCCTAAAGTTGCAAATAATT 59.752 36.000 0.00 0.00 32.58 1.40
453 454 4.777366 ACTGCCCCTAAAGTTGCAAATAAT 59.223 37.500 0.00 0.00 32.58 1.28
454 455 4.156477 ACTGCCCCTAAAGTTGCAAATAA 58.844 39.130 0.00 0.00 32.58 1.40
455 456 3.773560 ACTGCCCCTAAAGTTGCAAATA 58.226 40.909 0.00 0.00 32.58 1.40
456 457 2.608623 ACTGCCCCTAAAGTTGCAAAT 58.391 42.857 0.00 0.00 32.58 2.32
457 458 2.080654 ACTGCCCCTAAAGTTGCAAA 57.919 45.000 0.00 0.00 32.58 3.68
458 459 2.080654 AACTGCCCCTAAAGTTGCAA 57.919 45.000 0.00 0.00 35.34 4.08
459 460 2.080654 AAACTGCCCCTAAAGTTGCA 57.919 45.000 0.00 0.00 36.75 4.08
460 461 4.594123 TTAAAACTGCCCCTAAAGTTGC 57.406 40.909 0.00 0.00 36.75 4.17
461 462 6.156519 GTCATTAAAACTGCCCCTAAAGTTG 58.843 40.000 0.00 0.00 36.75 3.16
462 463 5.048294 CGTCATTAAAACTGCCCCTAAAGTT 60.048 40.000 0.00 0.00 38.25 2.66
463 464 4.457949 CGTCATTAAAACTGCCCCTAAAGT 59.542 41.667 0.00 0.00 0.00 2.66
464 465 4.142469 CCGTCATTAAAACTGCCCCTAAAG 60.142 45.833 0.00 0.00 0.00 1.85
465 466 3.759618 CCGTCATTAAAACTGCCCCTAAA 59.240 43.478 0.00 0.00 0.00 1.85
466 467 3.009253 TCCGTCATTAAAACTGCCCCTAA 59.991 43.478 0.00 0.00 0.00 2.69
467 468 2.572556 TCCGTCATTAAAACTGCCCCTA 59.427 45.455 0.00 0.00 0.00 3.53
468 469 1.353022 TCCGTCATTAAAACTGCCCCT 59.647 47.619 0.00 0.00 0.00 4.79
469 470 1.471287 GTCCGTCATTAAAACTGCCCC 59.529 52.381 0.00 0.00 0.00 5.80
470 471 1.129811 CGTCCGTCATTAAAACTGCCC 59.870 52.381 0.00 0.00 0.00 5.36
471 472 2.070783 TCGTCCGTCATTAAAACTGCC 58.929 47.619 0.00 0.00 0.00 4.85
472 473 2.991190 TCTCGTCCGTCATTAAAACTGC 59.009 45.455 0.00 0.00 0.00 4.40
473 474 4.921515 TCTTCTCGTCCGTCATTAAAACTG 59.078 41.667 0.00 0.00 0.00 3.16
474 475 5.130292 TCTTCTCGTCCGTCATTAAAACT 57.870 39.130 0.00 0.00 0.00 2.66
475 476 5.668132 GCTTCTTCTCGTCCGTCATTAAAAC 60.668 44.000 0.00 0.00 0.00 2.43
476 477 4.387862 GCTTCTTCTCGTCCGTCATTAAAA 59.612 41.667 0.00 0.00 0.00 1.52
477 478 3.924686 GCTTCTTCTCGTCCGTCATTAAA 59.075 43.478 0.00 0.00 0.00 1.52
478 479 3.057104 TGCTTCTTCTCGTCCGTCATTAA 60.057 43.478 0.00 0.00 0.00 1.40
479 480 2.490509 TGCTTCTTCTCGTCCGTCATTA 59.509 45.455 0.00 0.00 0.00 1.90
480 481 1.272490 TGCTTCTTCTCGTCCGTCATT 59.728 47.619 0.00 0.00 0.00 2.57
481 482 0.888619 TGCTTCTTCTCGTCCGTCAT 59.111 50.000 0.00 0.00 0.00 3.06
482 483 0.671796 TTGCTTCTTCTCGTCCGTCA 59.328 50.000 0.00 0.00 0.00 4.35
483 484 1.997669 ATTGCTTCTTCTCGTCCGTC 58.002 50.000 0.00 0.00 0.00 4.79
484 485 2.735762 GCTATTGCTTCTTCTCGTCCGT 60.736 50.000 0.00 0.00 36.03 4.69
485 486 1.855360 GCTATTGCTTCTTCTCGTCCG 59.145 52.381 0.00 0.00 36.03 4.79
486 487 2.205911 GGCTATTGCTTCTTCTCGTCC 58.794 52.381 0.00 0.00 39.59 4.79
487 488 1.855360 CGGCTATTGCTTCTTCTCGTC 59.145 52.381 0.00 0.00 39.59 4.20
488 489 1.204941 ACGGCTATTGCTTCTTCTCGT 59.795 47.619 0.00 0.00 39.59 4.18
489 490 1.927895 ACGGCTATTGCTTCTTCTCG 58.072 50.000 0.00 0.00 39.59 4.04
490 491 4.686839 AAAACGGCTATTGCTTCTTCTC 57.313 40.909 0.00 0.00 39.59 2.87
491 492 6.759497 AATAAAACGGCTATTGCTTCTTCT 57.241 33.333 0.00 0.00 39.59 2.85
492 493 7.694886 ACTAATAAAACGGCTATTGCTTCTTC 58.305 34.615 0.00 0.00 39.59 2.87
493 494 7.625828 ACTAATAAAACGGCTATTGCTTCTT 57.374 32.000 0.00 0.00 39.59 2.52
494 495 7.441458 CCTACTAATAAAACGGCTATTGCTTCT 59.559 37.037 0.00 0.00 39.59 2.85
495 496 7.226128 ACCTACTAATAAAACGGCTATTGCTTC 59.774 37.037 0.00 0.00 39.59 3.86
496 497 7.052248 ACCTACTAATAAAACGGCTATTGCTT 58.948 34.615 0.00 0.00 39.59 3.91
497 498 6.589135 ACCTACTAATAAAACGGCTATTGCT 58.411 36.000 0.00 0.00 39.59 3.91
498 499 6.856135 ACCTACTAATAAAACGGCTATTGC 57.144 37.500 0.00 0.00 38.76 3.56
515 516 9.469097 CCTCTATAGTGCATATCTTTACCTACT 57.531 37.037 0.00 0.00 0.00 2.57
516 517 9.245481 ACCTCTATAGTGCATATCTTTACCTAC 57.755 37.037 0.00 0.00 0.00 3.18
518 519 9.469097 CTACCTCTATAGTGCATATCTTTACCT 57.531 37.037 0.00 0.00 0.00 3.08
519 520 9.245481 ACTACCTCTATAGTGCATATCTTTACC 57.755 37.037 0.00 0.00 34.02 2.85
528 529 9.179909 GTGTATGATACTACCTCTATAGTGCAT 57.820 37.037 4.03 0.00 36.09 3.96
529 530 8.383947 AGTGTATGATACTACCTCTATAGTGCA 58.616 37.037 4.03 0.00 36.09 4.57
530 531 8.795842 AGTGTATGATACTACCTCTATAGTGC 57.204 38.462 4.03 0.00 36.09 4.40
564 565 8.260818 GGAGTAACATATACCAGTATCATGCAT 58.739 37.037 0.00 0.00 0.00 3.96
565 566 7.310423 GGGAGTAACATATACCAGTATCATGCA 60.310 40.741 0.00 0.00 0.00 3.96
571 1417 6.631107 AGTGGGGAGTAACATATACCAGTAT 58.369 40.000 0.00 0.00 0.00 2.12
577 1423 6.495872 TGGTCATAGTGGGGAGTAACATATAC 59.504 42.308 0.00 0.00 0.00 1.47
579 1425 5.473273 TGGTCATAGTGGGGAGTAACATAT 58.527 41.667 0.00 0.00 0.00 1.78
581 1427 3.711704 CTGGTCATAGTGGGGAGTAACAT 59.288 47.826 0.00 0.00 0.00 2.71
582 1428 3.104512 CTGGTCATAGTGGGGAGTAACA 58.895 50.000 0.00 0.00 0.00 2.41
586 1432 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
587 1433 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
591 1437 2.501723 ACTGTAAGGCTGGTCATAGTGG 59.498 50.000 0.00 0.00 39.30 4.00
592 1438 3.895232 ACTGTAAGGCTGGTCATAGTG 57.105 47.619 0.00 0.00 39.30 2.74
593 1439 4.611367 AGTACTGTAAGGCTGGTCATAGT 58.389 43.478 0.00 0.00 39.30 2.12
594 1440 5.361285 AGAAGTACTGTAAGGCTGGTCATAG 59.639 44.000 0.00 0.00 39.30 2.23
595 1441 5.269991 AGAAGTACTGTAAGGCTGGTCATA 58.730 41.667 0.00 0.00 39.30 2.15
596 1442 4.097418 AGAAGTACTGTAAGGCTGGTCAT 58.903 43.478 0.00 0.00 39.30 3.06
597 1443 3.507411 AGAAGTACTGTAAGGCTGGTCA 58.493 45.455 0.00 0.00 39.30 4.02
598 1444 4.098196 CCTAGAAGTACTGTAAGGCTGGTC 59.902 50.000 0.00 0.00 39.30 4.02
599 1445 4.024670 CCTAGAAGTACTGTAAGGCTGGT 58.975 47.826 0.00 0.00 39.30 4.00
600 1446 4.279145 TCCTAGAAGTACTGTAAGGCTGG 58.721 47.826 11.18 1.39 39.30 4.85
603 1449 5.195185 ACTCTCCTAGAAGTACTGTAAGGC 58.805 45.833 11.18 0.00 39.30 4.35
604 1450 7.012610 GCTTACTCTCCTAGAAGTACTGTAAGG 59.987 44.444 18.20 14.65 39.30 2.69
605 1451 7.553402 TGCTTACTCTCCTAGAAGTACTGTAAG 59.447 40.741 14.80 14.80 38.05 2.34
606 1452 7.400439 TGCTTACTCTCCTAGAAGTACTGTAA 58.600 38.462 0.00 0.00 0.00 2.41
607 1453 6.955364 TGCTTACTCTCCTAGAAGTACTGTA 58.045 40.000 0.00 0.00 0.00 2.74
608 1454 5.817784 TGCTTACTCTCCTAGAAGTACTGT 58.182 41.667 0.00 0.00 0.00 3.55
609 1455 6.116806 TCTGCTTACTCTCCTAGAAGTACTG 58.883 44.000 0.00 0.00 0.00 2.74
610 1456 6.316280 TCTGCTTACTCTCCTAGAAGTACT 57.684 41.667 0.00 0.00 0.00 2.73
611 1457 6.374894 TGTTCTGCTTACTCTCCTAGAAGTAC 59.625 42.308 0.00 0.00 0.00 2.73
612 1458 6.374894 GTGTTCTGCTTACTCTCCTAGAAGTA 59.625 42.308 0.00 0.00 0.00 2.24
613 1459 5.184287 GTGTTCTGCTTACTCTCCTAGAAGT 59.816 44.000 0.00 0.00 0.00 3.01
614 1460 5.393678 GGTGTTCTGCTTACTCTCCTAGAAG 60.394 48.000 0.00 0.00 0.00 2.85
615 1461 4.463186 GGTGTTCTGCTTACTCTCCTAGAA 59.537 45.833 0.00 0.00 0.00 2.10
617 1463 3.764434 TGGTGTTCTGCTTACTCTCCTAG 59.236 47.826 0.00 0.00 0.00 3.02
624 1470 7.399245 TTTAAAACTTGGTGTTCTGCTTACT 57.601 32.000 0.00 0.00 38.03 2.24
664 1514 1.580059 TCCCTTTGAGTCCCGCTTAT 58.420 50.000 0.00 0.00 0.00 1.73
697 1552 2.391389 GGAGCCGTTCCTTCGCTTG 61.391 63.158 0.00 0.00 43.16 4.01
698 1553 2.047179 GGAGCCGTTCCTTCGCTT 60.047 61.111 0.00 0.00 43.16 4.68
699 1554 3.311110 TGGAGCCGTTCCTTCGCT 61.311 61.111 2.65 0.00 46.92 4.93
700 1555 3.119096 GTGGAGCCGTTCCTTCGC 61.119 66.667 2.65 0.00 46.92 4.70
701 1556 2.809601 CGTGGAGCCGTTCCTTCG 60.810 66.667 2.65 4.31 46.92 3.79
784 1649 2.360852 GGACGACGAGGAGGTGGA 60.361 66.667 0.00 0.00 0.00 4.02
785 1650 3.450115 GGGACGACGAGGAGGTGG 61.450 72.222 0.00 0.00 0.00 4.61
1199 2094 1.153745 CAAAGGAGGAGCTCGACGG 60.154 63.158 7.83 0.00 0.00 4.79
1202 2097 2.660064 GGCCAAAGGAGGAGCTCGA 61.660 63.158 7.83 0.00 0.00 4.04
1204 2099 2.124942 CGGCCAAAGGAGGAGCTC 60.125 66.667 4.71 4.71 0.00 4.09
1205 2100 3.721706 CCGGCCAAAGGAGGAGCT 61.722 66.667 2.24 0.00 0.00 4.09
1207 2102 2.245438 GAGACCGGCCAAAGGAGGAG 62.245 65.000 0.00 0.00 0.00 3.69
1208 2103 2.203938 AGACCGGCCAAAGGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
1209 2104 2.269241 GAGACCGGCCAAAGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
1210 2105 2.269241 GGAGACCGGCCAAAGGAG 59.731 66.667 0.00 0.00 0.00 3.69
1222 2117 3.479269 CAAGAACGCGCCGGAGAC 61.479 66.667 10.31 0.00 0.00 3.36
1232 2127 1.535860 CCAAGCAACCAACCAAGAACG 60.536 52.381 0.00 0.00 0.00 3.95
1245 2140 0.178995 TGAGCACACCATCCAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
1257 2152 2.361757 CCACCACAGAAAAATGAGCACA 59.638 45.455 0.00 0.00 0.00 4.57
1335 2230 4.405671 AGGTCGAGGTCCGCGAGA 62.406 66.667 18.67 0.00 36.24 4.04
1431 2326 2.089349 GCTGTCGTCGGTGAGCTTC 61.089 63.158 0.00 0.00 0.00 3.86
1478 2373 3.920446 AGCGAGAAAGAGAAGAAAGTCC 58.080 45.455 0.00 0.00 0.00 3.85
1479 2374 5.694458 AGAAAGCGAGAAAGAGAAGAAAGTC 59.306 40.000 0.00 0.00 0.00 3.01
1480 2375 5.606505 AGAAAGCGAGAAAGAGAAGAAAGT 58.393 37.500 0.00 0.00 0.00 2.66
1481 2376 6.361899 CAAGAAAGCGAGAAAGAGAAGAAAG 58.638 40.000 0.00 0.00 0.00 2.62
1482 2377 5.237344 CCAAGAAAGCGAGAAAGAGAAGAAA 59.763 40.000 0.00 0.00 0.00 2.52
1483 2378 4.752101 CCAAGAAAGCGAGAAAGAGAAGAA 59.248 41.667 0.00 0.00 0.00 2.52
1484 2379 4.310769 CCAAGAAAGCGAGAAAGAGAAGA 58.689 43.478 0.00 0.00 0.00 2.87
1485 2380 3.120373 GCCAAGAAAGCGAGAAAGAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
1486 2381 2.808543 GCCAAGAAAGCGAGAAAGAGAA 59.191 45.455 0.00 0.00 0.00 2.87
1487 2382 2.224281 TGCCAAGAAAGCGAGAAAGAGA 60.224 45.455 0.00 0.00 0.00 3.10
1488 2383 2.096019 GTGCCAAGAAAGCGAGAAAGAG 60.096 50.000 0.00 0.00 0.00 2.85
1489 2384 1.873591 GTGCCAAGAAAGCGAGAAAGA 59.126 47.619 0.00 0.00 0.00 2.52
1530 2425 0.615827 GAAATGCTGCCCCTTTCCCT 60.616 55.000 0.00 0.00 0.00 4.20
1621 2519 2.925706 TCCAGCACCGTTAGCCCA 60.926 61.111 0.00 0.00 0.00 5.36
1769 2667 3.490759 GGCGCACACATCCTCGTG 61.491 66.667 10.83 0.00 42.81 4.35
1909 2808 1.153568 GCTGGCGTACATGAGCTGA 60.154 57.895 0.00 0.00 0.00 4.26
1959 2858 1.475169 CCAGCTCTCCACAGACACCA 61.475 60.000 0.00 0.00 0.00 4.17
2114 3013 1.115467 CGGATGTAGAACTCCTGCCT 58.885 55.000 0.00 0.00 0.00 4.75
2248 3147 9.877178 AAGATTTAGGAAGTTGAGTACAGTATG 57.123 33.333 0.00 0.00 46.00 2.39
2259 3158 9.784680 CATGAATGAGAAAGATTTAGGAAGTTG 57.215 33.333 0.00 0.00 0.00 3.16
2351 3250 2.997315 TCTGACAGCAGTCCCGGG 60.997 66.667 16.85 16.85 44.33 5.73
2357 3256 1.364171 GGTGACGTCTGACAGCAGT 59.636 57.895 17.92 0.00 42.84 4.40
2376 3275 1.562575 CCGTTTTCCCTGAACGTCCG 61.563 60.000 8.33 0.00 46.09 4.79
2385 3284 1.004918 CGAGCAGTCCGTTTTCCCT 60.005 57.895 0.00 0.00 0.00 4.20
2420 3319 0.893270 CCATGTCGCCCTTGGTTGAA 60.893 55.000 0.00 0.00 34.43 2.69
2582 3481 2.050350 GTCGTCCCGGTCATCCTGA 61.050 63.158 0.00 0.00 0.00 3.86
2701 3600 1.215382 CCTGGCTCGATCGTTGTCA 59.785 57.895 15.94 15.24 0.00 3.58
2702 3601 2.167861 GCCTGGCTCGATCGTTGTC 61.168 63.158 15.94 11.39 0.00 3.18
2723 3622 3.884774 AGGGTGCCCAAACGAGCA 61.885 61.111 10.26 0.00 38.92 4.26
2730 3629 3.387609 AACCAAGCAGGGTGCCCAA 62.388 57.895 10.26 0.00 46.52 4.12
2737 3636 1.515521 GGACGTTGAACCAAGCAGGG 61.516 60.000 0.00 0.00 43.89 4.45
2797 4442 1.756430 GACCCTGATCTTGCTTTCCC 58.244 55.000 0.00 0.00 0.00 3.97
2815 4469 0.826715 CTGCTTCTTCCTGATCCCGA 59.173 55.000 0.00 0.00 0.00 5.14
2862 5484 4.503910 TCCACTTATGTACATGTCTGCAC 58.496 43.478 18.81 0.00 0.00 4.57
3184 5904 7.286546 TCCACCATAATTGAAGAAAAAGTGACA 59.713 33.333 0.00 0.00 0.00 3.58
3185 5905 7.657336 TCCACCATAATTGAAGAAAAAGTGAC 58.343 34.615 0.00 0.00 0.00 3.67
3186 5906 7.505585 ACTCCACCATAATTGAAGAAAAAGTGA 59.494 33.333 0.00 0.00 0.00 3.41
3188 5908 7.839680 ACTCCACCATAATTGAAGAAAAAGT 57.160 32.000 0.00 0.00 0.00 2.66
3189 5909 7.116805 GCAACTCCACCATAATTGAAGAAAAAG 59.883 37.037 0.00 0.00 0.00 2.27
3190 5910 6.928492 GCAACTCCACCATAATTGAAGAAAAA 59.072 34.615 0.00 0.00 0.00 1.94
3203 5926 0.892358 CAGCACAGCAACTCCACCAT 60.892 55.000 0.00 0.00 0.00 3.55
3266 5989 1.196104 TACTGTCCCCGGACCCAAAG 61.196 60.000 0.73 4.62 43.97 2.77
3353 6076 1.620323 TGTGTAGCTCTGCATCACTGT 59.380 47.619 0.00 0.00 36.22 3.55
3390 6113 9.435570 AGTAGTAGTTGGGACATATATCTTGTT 57.564 33.333 0.00 0.00 39.30 2.83
3393 6116 9.245481 GCTAGTAGTAGTTGGGACATATATCTT 57.755 37.037 6.47 0.00 39.30 2.40
3394 6117 7.835181 GGCTAGTAGTAGTTGGGACATATATCT 59.165 40.741 6.47 0.00 39.30 1.98
3395 6118 7.614583 TGGCTAGTAGTAGTTGGGACATATATC 59.385 40.741 6.47 0.00 39.30 1.63
3397 6120 6.855667 TGGCTAGTAGTAGTTGGGACATATA 58.144 40.000 6.47 0.00 39.30 0.86
3398 6121 5.712752 TGGCTAGTAGTAGTTGGGACATAT 58.287 41.667 6.47 0.00 39.30 1.78
3403 6126 7.762610 TCTAATATGGCTAGTAGTAGTTGGGA 58.237 38.462 6.47 0.00 29.65 4.37
3408 6131 9.675464 GATCACTCTAATATGGCTAGTAGTAGT 57.325 37.037 6.47 0.00 29.65 2.73
3417 6140 6.499699 TCCTCATTGATCACTCTAATATGGCT 59.500 38.462 0.00 0.00 0.00 4.75
3446 6169 8.026341 TCTCGTTATATCGTAGGAGTGTAATG 57.974 38.462 3.29 0.00 0.00 1.90
3451 6174 4.142859 GGCTCTCGTTATATCGTAGGAGTG 60.143 50.000 16.41 7.16 0.00 3.51
3452 6175 4.002316 GGCTCTCGTTATATCGTAGGAGT 58.998 47.826 16.41 0.00 0.00 3.85
3453 6176 4.001652 TGGCTCTCGTTATATCGTAGGAG 58.998 47.826 3.29 9.78 0.00 3.69
3454 6177 4.011966 TGGCTCTCGTTATATCGTAGGA 57.988 45.455 3.29 0.00 0.00 2.94
3455 6178 4.438880 CCATGGCTCTCGTTATATCGTAGG 60.439 50.000 0.00 0.00 0.00 3.18
3456 6179 4.438880 CCCATGGCTCTCGTTATATCGTAG 60.439 50.000 6.09 4.19 0.00 3.51
3457 6180 3.442625 CCCATGGCTCTCGTTATATCGTA 59.557 47.826 6.09 0.00 0.00 3.43
3458 6181 2.231478 CCCATGGCTCTCGTTATATCGT 59.769 50.000 6.09 0.00 0.00 3.73
3459 6182 2.417379 CCCCATGGCTCTCGTTATATCG 60.417 54.545 6.09 0.00 0.00 2.92
3460 6183 3.252974 CCCCATGGCTCTCGTTATATC 57.747 52.381 6.09 0.00 0.00 1.63
3473 6196 1.751927 GCTCTGTCAAGCCCCATGG 60.752 63.158 4.14 4.14 36.22 3.66
3474 6197 1.001764 TGCTCTGTCAAGCCCCATG 60.002 57.895 5.06 0.00 41.77 3.66
3475 6198 1.001641 GTGCTCTGTCAAGCCCCAT 60.002 57.895 5.06 0.00 41.77 4.00
3493 6216 9.369904 CTTGTTTCTTGTATTTTCCCCATTATG 57.630 33.333 0.00 0.00 0.00 1.90
3495 6218 7.015682 TGCTTGTTTCTTGTATTTTCCCCATTA 59.984 33.333 0.00 0.00 0.00 1.90
3500 6223 5.842907 ACTGCTTGTTTCTTGTATTTTCCC 58.157 37.500 0.00 0.00 0.00 3.97
3515 6277 6.881065 TCTGCTGATAAATTCTTACTGCTTGT 59.119 34.615 0.00 0.00 0.00 3.16
3555 6317 7.692415 AGGTTTCAGGAAAACTGTTAGGCATC 61.692 42.308 11.31 0.00 45.78 3.91
3607 6369 2.154462 AGTCAGGAGCAACCAAATTCG 58.846 47.619 2.96 0.00 42.04 3.34
3626 6388 4.246458 GCTAAACTCAGTTGGTCCTGTAG 58.754 47.826 0.00 0.00 34.02 2.74
3822 6592 5.008613 TGACACTTGATTGGAGTTGTTAAGC 59.991 40.000 0.00 0.00 0.00 3.09
3823 6593 6.618287 TGACACTTGATTGGAGTTGTTAAG 57.382 37.500 0.00 0.00 0.00 1.85
3854 6624 5.311265 GCATCATCAACATCTTCCCATCTA 58.689 41.667 0.00 0.00 0.00 1.98
3883 6654 3.708563 AACCACAAACTTGTCATTCCG 57.291 42.857 0.00 0.00 39.91 4.30
3927 6698 2.642171 ACTCCAGGAATCAGGTGGTA 57.358 50.000 0.00 0.00 32.73 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.