Multiple sequence alignment - TraesCS7B01G215100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G215100 chr7B 100.000 5385 0 0 1 5385 394762588 394767972 0.000000e+00 9945.0
1 TraesCS7B01G215100 chr7B 97.748 1110 23 2 2889 3996 732182282 732183391 0.000000e+00 1910.0
2 TraesCS7B01G215100 chr7B 97.746 1109 23 2 2889 3996 732133405 732134512 0.000000e+00 1908.0
3 TraesCS7B01G215100 chr7B 97.571 741 15 1 2160 2897 237925763 237926503 0.000000e+00 1266.0
4 TraesCS7B01G215100 chr7B 94.005 734 17 6 2160 2890 732179134 732179843 0.000000e+00 1086.0
5 TraesCS7B01G215100 chr7B 100.000 29 0 0 4846 4874 394767361 394767389 3.000000e-03 54.7
6 TraesCS7B01G215100 chr7B 100.000 29 0 0 4774 4802 394767433 394767461 3.000000e-03 54.7
7 TraesCS7B01G215100 chr7A 93.363 1567 58 22 633 2161 448190847 448192405 0.000000e+00 2276.0
8 TraesCS7B01G215100 chr7A 95.345 1117 40 4 2889 3995 712343598 712344712 0.000000e+00 1764.0
9 TraesCS7B01G215100 chr7A 90.489 757 35 13 3996 4736 448192397 448193132 0.000000e+00 965.0
10 TraesCS7B01G215100 chr7A 95.133 226 10 1 5025 5249 448193639 448193864 6.630000e-94 355.0
11 TraesCS7B01G215100 chr7A 95.897 195 7 1 4802 4996 448193461 448193654 1.130000e-81 315.0
12 TraesCS7B01G215100 chr7A 96.203 79 3 0 5307 5385 729564949 729564871 4.380000e-26 130.0
13 TraesCS7B01G215100 chr7D 93.006 1587 53 24 589 2150 394940742 394942295 0.000000e+00 2263.0
14 TraesCS7B01G215100 chr7D 91.968 996 39 17 4003 4996 394942291 394943247 0.000000e+00 1358.0
15 TraesCS7B01G215100 chr7D 91.848 736 55 3 2160 2890 528806191 528806926 0.000000e+00 1022.0
16 TraesCS7B01G215100 chr7D 89.902 307 25 2 57 358 394939999 394940304 1.820000e-104 390.0
17 TraesCS7B01G215100 chr7D 93.536 263 16 1 5025 5287 394943232 394943493 1.820000e-104 390.0
18 TraesCS7B01G215100 chr7D 96.154 78 3 0 5308 5385 383285017 383285094 1.570000e-25 128.0
19 TraesCS7B01G215100 chr3B 97.930 1111 20 3 2889 3996 23790647 23791757 0.000000e+00 1921.0
20 TraesCS7B01G215100 chr3B 97.166 988 23 5 2889 3871 20814272 20813285 0.000000e+00 1664.0
21 TraesCS7B01G215100 chr3B 97.951 732 11 2 2162 2890 23787471 23788201 0.000000e+00 1266.0
22 TraesCS7B01G215100 chr3B 97.404 732 16 1 2162 2890 444143270 444142539 0.000000e+00 1243.0
23 TraesCS7B01G215100 chr3B 96.617 739 14 2 2162 2897 20817322 20816592 0.000000e+00 1216.0
24 TraesCS7B01G215100 chr3B 99.185 368 2 1 2889 3255 444140093 444139726 0.000000e+00 662.0
25 TraesCS7B01G215100 chr6B 97.840 1111 22 2 2889 3997 703252427 703253537 0.000000e+00 1917.0
26 TraesCS7B01G215100 chr6B 97.678 732 14 1 2162 2890 703249638 703250369 0.000000e+00 1254.0
27 TraesCS7B01G215100 chr6B 91.037 926 65 9 3076 3995 704394503 704393590 0.000000e+00 1234.0
28 TraesCS7B01G215100 chr6B 95.062 81 4 0 5305 5385 87526288 87526208 1.570000e-25 128.0
29 TraesCS7B01G215100 chr4B 97.473 1108 27 1 2889 3995 17052987 17051880 0.000000e+00 1890.0
30 TraesCS7B01G215100 chr4B 96.585 732 21 2 2162 2890 17056971 17056241 0.000000e+00 1210.0
31 TraesCS7B01G215100 chr4B 90.909 44 4 0 14 57 532232459 532232416 5.820000e-05 60.2
32 TraesCS7B01G215100 chr4D 95.204 1105 40 5 2889 3983 8877660 8878761 0.000000e+00 1735.0
33 TraesCS7B01G215100 chr4D 93.269 728 45 2 2167 2890 8874502 8875229 0.000000e+00 1070.0
34 TraesCS7B01G215100 chr5A 91.079 1121 55 18 2889 3998 644101977 644103063 0.000000e+00 1474.0
35 TraesCS7B01G215100 chr5A 93.827 81 4 1 5302 5382 567885228 567885307 2.630000e-23 121.0
36 TraesCS7B01G215100 chr1B 96.752 739 19 3 2162 2897 58494949 58495685 0.000000e+00 1227.0
37 TraesCS7B01G215100 chr3A 97.368 76 2 0 5310 5385 449120024 449119949 4.380000e-26 130.0
38 TraesCS7B01G215100 chr2A 95.062 81 4 0 5305 5385 723523026 723523106 1.570000e-25 128.0
39 TraesCS7B01G215100 chr2A 89.773 88 7 2 5297 5383 642200772 642200686 1.590000e-20 111.0
40 TraesCS7B01G215100 chr5B 95.000 80 4 0 5306 5385 684232370 684232291 5.660000e-25 126.0
41 TraesCS7B01G215100 chr5B 84.483 58 7 2 1 57 62208791 62208847 7.530000e-04 56.5
42 TraesCS7B01G215100 chr2D 92.045 88 5 2 5298 5383 19010855 19010942 7.320000e-24 122.0
43 TraesCS7B01G215100 chr5D 97.059 34 1 0 1530 1563 88358943 88358910 2.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G215100 chr7B 394762588 394767972 5384 False 3351.466667 9945 100.0000 1 5385 3 chr7B.!!$F3 5384
1 TraesCS7B01G215100 chr7B 732133405 732134512 1107 False 1908.000000 1908 97.7460 2889 3996 1 chr7B.!!$F2 1107
2 TraesCS7B01G215100 chr7B 732179134 732183391 4257 False 1498.000000 1910 95.8765 2160 3996 2 chr7B.!!$F4 1836
3 TraesCS7B01G215100 chr7B 237925763 237926503 740 False 1266.000000 1266 97.5710 2160 2897 1 chr7B.!!$F1 737
4 TraesCS7B01G215100 chr7A 712343598 712344712 1114 False 1764.000000 1764 95.3450 2889 3995 1 chr7A.!!$F1 1106
5 TraesCS7B01G215100 chr7A 448190847 448193864 3017 False 977.750000 2276 93.7205 633 5249 4 chr7A.!!$F2 4616
6 TraesCS7B01G215100 chr7D 394939999 394943493 3494 False 1100.250000 2263 92.1030 57 5287 4 chr7D.!!$F3 5230
7 TraesCS7B01G215100 chr7D 528806191 528806926 735 False 1022.000000 1022 91.8480 2160 2890 1 chr7D.!!$F2 730
8 TraesCS7B01G215100 chr3B 23787471 23791757 4286 False 1593.500000 1921 97.9405 2162 3996 2 chr3B.!!$F1 1834
9 TraesCS7B01G215100 chr3B 20813285 20817322 4037 True 1440.000000 1664 96.8915 2162 3871 2 chr3B.!!$R1 1709
10 TraesCS7B01G215100 chr3B 444139726 444143270 3544 True 952.500000 1243 98.2945 2162 3255 2 chr3B.!!$R2 1093
11 TraesCS7B01G215100 chr6B 703249638 703253537 3899 False 1585.500000 1917 97.7590 2162 3997 2 chr6B.!!$F1 1835
12 TraesCS7B01G215100 chr6B 704393590 704394503 913 True 1234.000000 1234 91.0370 3076 3995 1 chr6B.!!$R2 919
13 TraesCS7B01G215100 chr4B 17051880 17056971 5091 True 1550.000000 1890 97.0290 2162 3995 2 chr4B.!!$R2 1833
14 TraesCS7B01G215100 chr4D 8874502 8878761 4259 False 1402.500000 1735 94.2365 2167 3983 2 chr4D.!!$F1 1816
15 TraesCS7B01G215100 chr5A 644101977 644103063 1086 False 1474.000000 1474 91.0790 2889 3998 1 chr5A.!!$F2 1109
16 TraesCS7B01G215100 chr1B 58494949 58495685 736 False 1227.000000 1227 96.7520 2162 2897 1 chr1B.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 635 0.179006 GCATCCCCTGAAGATGACCC 60.179 60.0 4.98 0.00 43.15 4.46 F
1153 1374 0.041238 TCTGTCGGTGGAGGATTCCT 59.959 55.0 4.44 4.44 44.36 3.36 F
1738 1971 0.673644 GTGAATCCTGACACGGGGTG 60.674 60.0 0.00 0.00 39.75 4.61 F
2933 9854 1.523758 GCCTCCTGAAACACGAACAT 58.476 50.0 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2061 0.263765 TCCTTATACCGCCTCACCCT 59.736 55.000 0.00 0.0 0.00 4.34 R
2264 2535 1.294138 GCTGTGTAACCCTACCGCA 59.706 57.895 0.00 0.0 34.36 5.69 R
3546 10513 1.001406 GGATCGAGATGGCTCCGAAAT 59.999 52.381 0.00 0.0 37.91 2.17 R
4800 12071 1.133216 CAGACCGCGAGATTCTGAAGA 59.867 52.381 8.23 0.0 41.09 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.085546 GGTACCCCGAGGACCCCT 62.086 72.222 0.00 0.00 36.03 4.79
38 39 2.040114 GTACCCCGAGGACCCCTT 59.960 66.667 0.00 0.00 31.76 3.95
39 40 1.311059 GTACCCCGAGGACCCCTTA 59.689 63.158 0.00 0.00 31.76 2.69
40 41 0.325577 GTACCCCGAGGACCCCTTAA 60.326 60.000 0.00 0.00 31.76 1.85
41 42 0.643822 TACCCCGAGGACCCCTTAAT 59.356 55.000 0.00 0.00 31.76 1.40
42 43 0.643822 ACCCCGAGGACCCCTTAATA 59.356 55.000 0.00 0.00 31.76 0.98
43 44 1.054231 CCCCGAGGACCCCTTAATAC 58.946 60.000 0.00 0.00 31.76 1.89
44 45 1.693404 CCCCGAGGACCCCTTAATACA 60.693 57.143 0.00 0.00 31.76 2.29
45 46 2.335933 CCCGAGGACCCCTTAATACAT 58.664 52.381 0.00 0.00 31.76 2.29
46 47 2.038557 CCCGAGGACCCCTTAATACATG 59.961 54.545 0.00 0.00 31.76 3.21
47 48 2.969950 CCGAGGACCCCTTAATACATGA 59.030 50.000 0.00 0.00 31.76 3.07
48 49 3.244112 CCGAGGACCCCTTAATACATGAC 60.244 52.174 0.00 0.00 31.76 3.06
49 50 3.641906 CGAGGACCCCTTAATACATGACT 59.358 47.826 0.00 0.00 31.76 3.41
50 51 4.262079 CGAGGACCCCTTAATACATGACTC 60.262 50.000 0.00 0.00 31.76 3.36
51 52 4.897051 AGGACCCCTTAATACATGACTCT 58.103 43.478 0.00 0.00 0.00 3.24
52 53 4.902448 AGGACCCCTTAATACATGACTCTC 59.098 45.833 0.00 0.00 0.00 3.20
53 54 4.902448 GGACCCCTTAATACATGACTCTCT 59.098 45.833 0.00 0.00 0.00 3.10
54 55 5.011227 GGACCCCTTAATACATGACTCTCTC 59.989 48.000 0.00 0.00 0.00 3.20
55 56 5.529289 ACCCCTTAATACATGACTCTCTCA 58.471 41.667 0.00 0.00 0.00 3.27
68 69 1.813178 CTCTCTCAGCCGACACTAACA 59.187 52.381 0.00 0.00 0.00 2.41
69 70 2.229062 CTCTCTCAGCCGACACTAACAA 59.771 50.000 0.00 0.00 0.00 2.83
76 77 2.027192 AGCCGACACTAACAACATGGAT 60.027 45.455 0.00 0.00 0.00 3.41
80 81 3.618594 CGACACTAACAACATGGATCCTG 59.381 47.826 14.23 11.14 0.00 3.86
144 145 4.037446 TGTGTGCCATAAAGAACTTTGACC 59.963 41.667 9.66 0.00 34.23 4.02
147 148 3.826157 TGCCATAAAGAACTTTGACCCAG 59.174 43.478 9.66 0.00 34.23 4.45
149 150 4.082733 GCCATAAAGAACTTTGACCCAGTC 60.083 45.833 9.66 0.00 34.23 3.51
154 155 9.014297 CATAAAGAACTTTGACCCAGTCTATTT 57.986 33.333 9.66 0.00 34.23 1.40
157 158 8.794335 AAGAACTTTGACCCAGTCTATTTATC 57.206 34.615 0.00 0.00 33.15 1.75
158 159 7.042335 AGAACTTTGACCCAGTCTATTTATCG 58.958 38.462 0.00 0.00 33.15 2.92
221 222 8.695456 ACTCAATATTCATGGGTAAATGAAACC 58.305 33.333 3.92 0.00 46.66 3.27
230 236 3.571571 GGTAAATGAAACCGTTTGGCTC 58.428 45.455 0.00 0.00 39.70 4.70
233 239 0.958822 ATGAAACCGTTTGGCTCCAC 59.041 50.000 0.00 0.00 39.70 4.02
244 250 4.214545 CGTTTGGCTCCACATTTGTAACTA 59.785 41.667 0.00 0.00 0.00 2.24
295 301 7.489113 GTGAAAAATGGTATGCTAGACAAATGG 59.511 37.037 0.00 0.00 0.00 3.16
300 306 4.947388 TGGTATGCTAGACAAATGGGAAAC 59.053 41.667 0.00 0.00 0.00 2.78
318 324 2.165301 CGACAATCGAAGGACGCCC 61.165 63.158 0.00 0.00 43.74 6.13
329 335 1.488390 AGGACGCCCTATTTAACGGA 58.512 50.000 0.00 0.00 42.15 4.69
330 336 2.044758 AGGACGCCCTATTTAACGGAT 58.955 47.619 0.00 0.00 42.15 4.18
336 342 4.584325 ACGCCCTATTTAACGGATACACTA 59.416 41.667 0.00 0.00 0.00 2.74
358 364 0.313672 GCTGCCCACGAACAAATGAA 59.686 50.000 0.00 0.00 0.00 2.57
360 366 2.801342 GCTGCCCACGAACAAATGAAAA 60.801 45.455 0.00 0.00 0.00 2.29
361 367 3.652274 CTGCCCACGAACAAATGAAAAT 58.348 40.909 0.00 0.00 0.00 1.82
362 368 3.388308 TGCCCACGAACAAATGAAAATG 58.612 40.909 0.00 0.00 0.00 2.32
363 369 3.181471 TGCCCACGAACAAATGAAAATGT 60.181 39.130 0.00 0.00 0.00 2.71
364 370 3.807071 GCCCACGAACAAATGAAAATGTT 59.193 39.130 0.00 0.00 42.18 2.71
366 372 5.736338 CCCACGAACAAATGAAAATGTTTG 58.264 37.500 0.00 4.72 43.51 2.93
368 374 5.293079 CCACGAACAAATGAAAATGTTTGGT 59.707 36.000 9.86 0.00 42.62 3.67
369 375 6.183360 CCACGAACAAATGAAAATGTTTGGTT 60.183 34.615 9.86 0.00 42.62 3.67
370 376 6.899243 CACGAACAAATGAAAATGTTTGGTTC 59.101 34.615 9.86 0.00 42.62 3.62
371 377 6.036626 ACGAACAAATGAAAATGTTTGGTTCC 59.963 34.615 9.86 0.00 42.62 3.62
372 378 6.510960 CGAACAAATGAAAATGTTTGGTTCCC 60.511 38.462 0.00 0.00 39.73 3.97
373 379 5.749462 ACAAATGAAAATGTTTGGTTCCCA 58.251 33.333 0.00 0.00 39.12 4.37
374 380 5.821995 ACAAATGAAAATGTTTGGTTCCCAG 59.178 36.000 0.00 0.00 39.12 4.45
375 381 4.622260 ATGAAAATGTTTGGTTCCCAGG 57.378 40.909 0.00 0.00 33.81 4.45
376 382 3.647636 TGAAAATGTTTGGTTCCCAGGA 58.352 40.909 0.00 0.00 33.81 3.86
377 383 4.230455 TGAAAATGTTTGGTTCCCAGGAT 58.770 39.130 0.00 0.00 33.81 3.24
378 384 4.657969 TGAAAATGTTTGGTTCCCAGGATT 59.342 37.500 0.00 0.00 33.81 3.01
379 385 5.131809 TGAAAATGTTTGGTTCCCAGGATTT 59.868 36.000 0.00 0.00 33.81 2.17
381 387 5.645056 AATGTTTGGTTCCCAGGATTTTT 57.355 34.783 0.00 0.00 33.81 1.94
402 408 5.590530 TTTTTAAGTTGCTCCAGCTTTGA 57.409 34.783 0.00 0.00 42.66 2.69
424 591 1.534729 AAAAATCTGTCCTCCGCCAC 58.465 50.000 0.00 0.00 0.00 5.01
428 595 0.904865 ATCTGTCCTCCGCCACTGAA 60.905 55.000 0.00 0.00 0.00 3.02
431 598 2.027625 GTCCTCCGCCACTGAAACG 61.028 63.158 0.00 0.00 0.00 3.60
434 601 1.291877 CCTCCGCCACTGAAACGAAG 61.292 60.000 0.00 0.00 0.00 3.79
455 623 2.046285 CGGGTTTGAGTGCATCCCC 61.046 63.158 0.00 0.00 36.07 4.81
462 630 1.588239 TGAGTGCATCCCCTGAAGAT 58.412 50.000 0.00 0.00 0.00 2.40
463 631 1.211212 TGAGTGCATCCCCTGAAGATG 59.789 52.381 0.00 0.00 43.31 2.90
464 632 1.487976 GAGTGCATCCCCTGAAGATGA 59.512 52.381 4.98 0.00 43.15 2.92
467 635 0.179006 GCATCCCCTGAAGATGACCC 60.179 60.000 4.98 0.00 43.15 4.46
511 679 7.802720 TGTTGTTCATAAGTTTGATCAATCGTG 59.197 33.333 9.40 10.23 37.54 4.35
515 683 5.294306 TCATAAGTTTGATCAATCGTGCCTC 59.706 40.000 9.40 0.00 0.00 4.70
517 685 3.005554 AGTTTGATCAATCGTGCCTCAG 58.994 45.455 9.40 0.00 0.00 3.35
530 698 2.342910 GCCTCAGCAACATGTTCTTG 57.657 50.000 8.48 10.07 39.53 3.02
531 699 1.668047 GCCTCAGCAACATGTTCTTGC 60.668 52.381 8.48 10.63 43.74 4.01
537 705 2.839474 GCAACATGTTCTTGCGTCTAC 58.161 47.619 8.48 0.00 35.04 2.59
538 706 2.412847 GCAACATGTTCTTGCGTCTACC 60.413 50.000 8.48 0.00 35.04 3.18
542 711 1.990799 TGTTCTTGCGTCTACCATCG 58.009 50.000 0.00 0.00 0.00 3.84
547 716 3.504863 TCTTGCGTCTACCATCGTAAAC 58.495 45.455 0.00 0.00 32.31 2.01
553 722 3.445857 GTCTACCATCGTAAACAGGAGC 58.554 50.000 0.00 0.00 0.00 4.70
561 730 4.657075 TCGTAAACAGGAGCGATTTTTC 57.343 40.909 0.00 0.00 0.00 2.29
570 739 0.605319 AGCGATTTTTCCTGTCGGCA 60.605 50.000 0.00 0.00 36.00 5.69
580 749 2.358957 TCCTGTCGGCATCATCTTTTG 58.641 47.619 0.00 0.00 0.00 2.44
582 751 3.055458 TCCTGTCGGCATCATCTTTTGTA 60.055 43.478 0.00 0.00 0.00 2.41
583 752 3.310774 CCTGTCGGCATCATCTTTTGTAG 59.689 47.826 0.00 0.00 0.00 2.74
584 753 2.677836 TGTCGGCATCATCTTTTGTAGC 59.322 45.455 0.00 0.00 0.00 3.58
585 754 1.933181 TCGGCATCATCTTTTGTAGCG 59.067 47.619 0.00 0.00 0.00 4.26
586 755 1.933181 CGGCATCATCTTTTGTAGCGA 59.067 47.619 0.00 0.00 0.00 4.93
587 756 2.285834 CGGCATCATCTTTTGTAGCGAC 60.286 50.000 0.00 0.00 0.00 5.19
599 813 1.026718 GTAGCGACCCAATGCAGCTT 61.027 55.000 0.00 0.00 39.14 3.74
689 904 1.809619 CGACGATGTGAACGCCCAT 60.810 57.895 0.00 0.00 0.00 4.00
790 1011 0.627451 AATCTGGCCAGCCAATGAGA 59.373 50.000 28.91 8.85 46.63 3.27
792 1013 1.203441 TCTGGCCAGCCAATGAGACT 61.203 55.000 28.91 0.00 46.63 3.24
838 1059 4.240103 CCGCGCAGGATCATGGGA 62.240 66.667 26.19 0.00 45.00 4.37
1153 1374 0.041238 TCTGTCGGTGGAGGATTCCT 59.959 55.000 4.44 4.44 44.36 3.36
1243 1473 3.684990 AGCAGCTCGAGCCGTTCA 61.685 61.111 32.94 0.00 43.38 3.18
1263 1493 4.172512 CTGCATCCTGAGGCGCCT 62.173 66.667 33.48 33.48 41.64 5.52
1318 1548 3.663815 ATCCTCGGCGTGTCCTCCT 62.664 63.158 6.85 0.00 0.00 3.69
1353 1583 3.053896 GGCGAAAGGGGTTCACCG 61.054 66.667 0.00 0.00 41.60 4.94
1364 1594 3.542676 TTCACCGTCGTGCACCCT 61.543 61.111 12.15 0.00 40.04 4.34
1401 1631 4.785453 GGGACTGCTGGCGGGAAG 62.785 72.222 6.36 0.00 0.00 3.46
1512 1745 1.908483 GACCACCACCTCATCCTCC 59.092 63.158 0.00 0.00 0.00 4.30
1674 1907 2.623889 GGAGCTCGATTCTGTAAGCCTA 59.376 50.000 7.83 0.00 35.32 3.93
1675 1908 3.551250 GGAGCTCGATTCTGTAAGCCTAC 60.551 52.174 7.83 0.00 35.32 3.18
1689 1922 1.600638 CCTACGACCCCCTTTGTCC 59.399 63.158 0.00 0.00 0.00 4.02
1737 1970 1.677552 GTGAATCCTGACACGGGGT 59.322 57.895 0.00 0.00 0.00 4.95
1738 1971 0.673644 GTGAATCCTGACACGGGGTG 60.674 60.000 0.00 0.00 39.75 4.61
1866 2105 3.197790 CATGCCCGGCTGTTCTCG 61.198 66.667 11.61 0.00 0.00 4.04
1953 2192 2.877582 ATCGCGTTCGTGCCGTAC 60.878 61.111 5.77 0.00 36.96 3.67
1964 2203 1.589803 GTGCCGTACCTGAACTTGTT 58.410 50.000 0.00 0.00 0.00 2.83
1968 2207 1.944024 CCGTACCTGAACTTGTTGCAA 59.056 47.619 0.00 0.00 0.00 4.08
1980 2219 6.096141 TGAACTTGTTGCAATTTCCTTAGTGA 59.904 34.615 0.59 0.00 0.00 3.41
1983 2222 4.469657 TGTTGCAATTTCCTTAGTGAGGT 58.530 39.130 0.59 0.00 46.39 3.85
2003 2259 5.994250 AGGTTGTGATCTACATACTGCATT 58.006 37.500 0.00 0.00 39.48 3.56
2087 2343 7.079048 AGATTCTATACCTCAGGGAATCTGTT 58.921 38.462 17.64 0.44 45.82 3.16
2098 2354 6.001460 TCAGGGAATCTGTTTGTAAATCGTT 58.999 36.000 0.00 0.00 43.76 3.85
2102 2358 7.176690 AGGGAATCTGTTTGTAAATCGTTGATT 59.823 33.333 0.00 0.00 33.25 2.57
2103 2359 8.455682 GGGAATCTGTTTGTAAATCGTTGATTA 58.544 33.333 0.00 0.00 31.46 1.75
2104 2360 9.490663 GGAATCTGTTTGTAAATCGTTGATTAG 57.509 33.333 0.00 0.00 31.46 1.73
2107 2363 9.653287 ATCTGTTTGTAAATCGTTGATTAGAGA 57.347 29.630 0.00 0.00 31.46 3.10
2150 2420 3.426695 CCCAGCGACAATTGAATGAACTC 60.427 47.826 13.59 0.00 0.00 3.01
2151 2421 3.189080 CCAGCGACAATTGAATGAACTCA 59.811 43.478 13.59 0.00 0.00 3.41
2152 2422 4.142534 CCAGCGACAATTGAATGAACTCAT 60.143 41.667 13.59 0.00 38.41 2.90
2153 2423 5.026462 CAGCGACAATTGAATGAACTCATC 58.974 41.667 13.59 0.00 35.10 2.92
2154 2424 4.696877 AGCGACAATTGAATGAACTCATCA 59.303 37.500 13.59 0.00 43.67 3.07
2264 2535 2.440817 GCTACCGCCAGGGGTACAT 61.441 63.158 9.38 0.00 43.47 2.29
2381 2654 3.065306 CCGCCAGGTACCTTGACA 58.935 61.111 17.04 0.00 0.00 3.58
2933 9854 1.523758 GCCTCCTGAAACACGAACAT 58.476 50.000 0.00 0.00 0.00 2.71
3546 10513 6.402222 GGATTGAGAGAGCTTACTTTTCTCA 58.598 40.000 0.00 0.00 41.41 3.27
3914 10883 2.597578 ACCCTGGCGGTAAGAAAAAT 57.402 45.000 0.00 0.00 45.97 1.82
3932 10901 6.481976 AGAAAAATGGTCAAATCCCGAAAAAC 59.518 34.615 0.00 0.00 0.00 2.43
3955 10925 1.200519 CAAACCGGGGTCAGATCCTA 58.799 55.000 6.32 0.00 0.00 2.94
3998 10968 6.149633 GTCAAAACACGAAATTTAGCCTCAT 58.850 36.000 0.00 0.00 0.00 2.90
3999 10969 7.302524 GTCAAAACACGAAATTTAGCCTCATA 58.697 34.615 0.00 0.00 0.00 2.15
4000 10970 7.270579 GTCAAAACACGAAATTTAGCCTCATAC 59.729 37.037 0.00 0.00 0.00 2.39
4001 10971 6.811253 AAACACGAAATTTAGCCTCATACA 57.189 33.333 0.00 0.00 0.00 2.29
4002 10972 6.422776 AACACGAAATTTAGCCTCATACAG 57.577 37.500 0.00 0.00 0.00 2.74
4003 10973 5.730550 ACACGAAATTTAGCCTCATACAGA 58.269 37.500 0.00 0.00 0.00 3.41
4004 10974 6.170506 ACACGAAATTTAGCCTCATACAGAA 58.829 36.000 0.00 0.00 0.00 3.02
4005 10975 6.092259 ACACGAAATTTAGCCTCATACAGAAC 59.908 38.462 0.00 0.00 0.00 3.01
4006 10976 6.313905 CACGAAATTTAGCCTCATACAGAACT 59.686 38.462 0.00 0.00 0.00 3.01
4011 10981 6.360370 TTTAGCCTCATACAGAACTGAAGT 57.640 37.500 8.87 0.00 0.00 3.01
4028 10999 5.039920 TGAAGTTCTCCACATGGATATGG 57.960 43.478 0.00 0.00 44.46 2.74
4029 11000 4.721274 TGAAGTTCTCCACATGGATATGGA 59.279 41.667 0.00 0.00 44.46 3.41
4062 11033 1.762708 AAATTATGGTCCCGTGCTGG 58.237 50.000 0.00 0.00 37.55 4.85
4084 11055 5.010112 TGGCCTTTTTCATTTGACGATTACA 59.990 36.000 3.32 0.00 0.00 2.41
4123 11095 5.242393 CCTCACACATCACTTGAAGGAAATT 59.758 40.000 0.00 0.00 0.00 1.82
4203 11179 5.013704 GGACAATACATATACACCCCATGGA 59.986 44.000 15.22 0.00 34.81 3.41
4221 11197 1.332997 GGATCTTCCTTGCGCATTCAG 59.667 52.381 12.75 5.60 32.53 3.02
4262 11239 6.522233 CTAGTAATGCAGCACATGAACTAG 57.478 41.667 18.16 18.16 43.10 2.57
4263 11240 5.089970 AGTAATGCAGCACATGAACTAGA 57.910 39.130 0.00 0.00 39.60 2.43
4264 11241 5.491070 AGTAATGCAGCACATGAACTAGAA 58.509 37.500 0.00 0.00 39.60 2.10
4275 11252 6.090088 GCACATGAACTAGAACTAGTCAGTTG 59.910 42.308 17.46 11.51 45.18 3.16
4303 11280 9.874205 TCCATTTTGTTTCATCAATCTTATTCC 57.126 29.630 0.00 0.00 0.00 3.01
4357 11334 2.350522 CAGGGTCGTTTCATCAAGGAG 58.649 52.381 0.00 0.00 29.78 3.69
4360 11337 3.003480 GGGTCGTTTCATCAAGGAGAAG 58.997 50.000 0.00 0.00 29.78 2.85
4515 11492 3.214328 CTGCCATATACCCAAACCAGAC 58.786 50.000 0.00 0.00 0.00 3.51
4516 11493 2.092103 TGCCATATACCCAAACCAGACC 60.092 50.000 0.00 0.00 0.00 3.85
4517 11494 2.751816 GCCATATACCCAAACCAGACCC 60.752 54.545 0.00 0.00 0.00 4.46
4779 12050 7.956508 TGTTTACACGAAGTTACAAATTGTG 57.043 32.000 9.15 0.00 41.61 3.33
4780 12051 7.528307 TGTTTACACGAAGTTACAAATTGTGT 58.472 30.769 9.15 11.54 41.61 3.72
4781 12052 8.021973 TGTTTACACGAAGTTACAAATTGTGTT 58.978 29.630 9.15 0.00 41.61 3.32
4782 12053 8.852380 GTTTACACGAAGTTACAAATTGTGTTT 58.148 29.630 9.15 0.34 41.61 2.83
4783 12054 6.862944 ACACGAAGTTACAAATTGTGTTTG 57.137 33.333 9.15 6.21 41.61 2.93
4784 12055 6.383415 ACACGAAGTTACAAATTGTGTTTGT 58.617 32.000 9.15 10.53 41.61 2.83
4785 12056 6.525280 ACACGAAGTTACAAATTGTGTTTGTC 59.475 34.615 9.15 0.00 41.61 3.18
4786 12057 6.524933 CACGAAGTTACAAATTGTGTTTGTCA 59.475 34.615 9.15 0.00 41.61 3.58
4787 12058 7.061210 CACGAAGTTACAAATTGTGTTTGTCAA 59.939 33.333 9.15 0.00 41.61 3.18
4788 12059 7.061326 ACGAAGTTACAAATTGTGTTTGTCAAC 59.939 33.333 9.15 3.40 37.78 3.18
4789 12060 7.061210 CGAAGTTACAAATTGTGTTTGTCAACA 59.939 33.333 9.15 0.00 42.10 3.33
4790 12061 8.770438 AAGTTACAAATTGTGTTTGTCAACAT 57.230 26.923 9.15 0.00 44.85 2.71
4791 12062 9.862371 AAGTTACAAATTGTGTTTGTCAACATA 57.138 25.926 9.15 0.00 44.85 2.29
4792 12063 9.296400 AGTTACAAATTGTGTTTGTCAACATAC 57.704 29.630 9.15 0.00 44.85 2.39
4793 12064 6.804534 ACAAATTGTGTTTGTCAACATACG 57.195 33.333 0.00 0.00 44.85 3.06
4794 12065 5.746245 ACAAATTGTGTTTGTCAACATACGG 59.254 36.000 0.00 0.00 44.85 4.02
4795 12066 3.972950 TTGTGTTTGTCAACATACGGG 57.027 42.857 0.00 0.00 44.85 5.28
4796 12067 3.195471 TGTGTTTGTCAACATACGGGA 57.805 42.857 0.00 0.00 44.85 5.14
4797 12068 3.542648 TGTGTTTGTCAACATACGGGAA 58.457 40.909 0.00 0.00 44.85 3.97
4798 12069 3.562141 TGTGTTTGTCAACATACGGGAAG 59.438 43.478 0.00 0.00 44.85 3.46
4799 12070 3.810941 GTGTTTGTCAACATACGGGAAGA 59.189 43.478 0.00 0.00 44.85 2.87
4800 12071 4.454504 GTGTTTGTCAACATACGGGAAGAT 59.545 41.667 0.00 0.00 44.85 2.40
4842 12113 0.870307 CCGTCTGATCGGCGTAAAGG 60.870 60.000 6.85 0.00 43.96 3.11
4862 12133 5.596836 AGGTGAATTGTGTTTGTCAACAT 57.403 34.783 0.00 0.00 44.85 2.71
4975 12246 4.556233 TGTATTTCTGTTCTGTCAGTCGG 58.444 43.478 0.00 0.60 36.85 4.79
4982 12253 3.713288 TGTTCTGTCAGTCGGTGTTAAG 58.287 45.455 0.00 0.00 0.00 1.85
4983 12254 3.382227 TGTTCTGTCAGTCGGTGTTAAGA 59.618 43.478 0.00 0.00 0.00 2.10
4984 12255 3.917329 TCTGTCAGTCGGTGTTAAGAG 57.083 47.619 0.00 0.00 0.00 2.85
4985 12256 3.220110 TCTGTCAGTCGGTGTTAAGAGT 58.780 45.455 0.00 0.00 0.00 3.24
4986 12257 3.252701 TCTGTCAGTCGGTGTTAAGAGTC 59.747 47.826 0.00 0.00 0.00 3.36
4987 12258 2.953648 TGTCAGTCGGTGTTAAGAGTCA 59.046 45.455 0.00 0.00 0.00 3.41
4988 12259 3.572682 TGTCAGTCGGTGTTAAGAGTCAT 59.427 43.478 0.00 0.00 0.00 3.06
4989 12260 3.921021 GTCAGTCGGTGTTAAGAGTCATG 59.079 47.826 0.00 0.00 0.00 3.07
4990 12261 3.572682 TCAGTCGGTGTTAAGAGTCATGT 59.427 43.478 0.00 0.00 0.00 3.21
4991 12262 3.921021 CAGTCGGTGTTAAGAGTCATGTC 59.079 47.826 0.00 0.00 0.00 3.06
4992 12263 3.572682 AGTCGGTGTTAAGAGTCATGTCA 59.427 43.478 0.00 0.00 0.00 3.58
4993 12264 3.673809 GTCGGTGTTAAGAGTCATGTCAC 59.326 47.826 0.00 0.00 0.00 3.67
4994 12265 2.661675 CGGTGTTAAGAGTCATGTCACG 59.338 50.000 0.00 0.00 0.00 4.35
4995 12266 3.650139 GGTGTTAAGAGTCATGTCACGT 58.350 45.455 0.00 0.00 0.00 4.49
4996 12267 4.614306 CGGTGTTAAGAGTCATGTCACGTA 60.614 45.833 0.00 0.00 0.00 3.57
4997 12268 5.408356 GGTGTTAAGAGTCATGTCACGTAT 58.592 41.667 0.00 0.00 0.00 3.06
4998 12269 5.288712 GGTGTTAAGAGTCATGTCACGTATG 59.711 44.000 0.00 0.00 0.00 2.39
4999 12270 5.288712 GTGTTAAGAGTCATGTCACGTATGG 59.711 44.000 0.00 0.00 0.00 2.74
5000 12271 5.047590 TGTTAAGAGTCATGTCACGTATGGT 60.048 40.000 0.00 0.00 0.00 3.55
5001 12272 6.151480 TGTTAAGAGTCATGTCACGTATGGTA 59.849 38.462 0.00 0.00 0.00 3.25
5002 12273 5.654603 AAGAGTCATGTCACGTATGGTAA 57.345 39.130 0.00 0.00 0.00 2.85
5003 12274 5.250235 AGAGTCATGTCACGTATGGTAAG 57.750 43.478 0.00 0.00 0.00 2.34
5004 12275 3.782046 AGTCATGTCACGTATGGTAAGC 58.218 45.455 0.00 0.00 0.00 3.09
5005 12276 3.194755 AGTCATGTCACGTATGGTAAGCA 59.805 43.478 0.00 0.00 0.00 3.91
5006 12277 3.930229 GTCATGTCACGTATGGTAAGCAA 59.070 43.478 0.00 0.00 0.00 3.91
5007 12278 4.570772 GTCATGTCACGTATGGTAAGCAAT 59.429 41.667 0.00 0.00 0.00 3.56
5008 12279 4.808895 TCATGTCACGTATGGTAAGCAATC 59.191 41.667 0.00 0.00 0.00 2.67
5009 12280 3.527533 TGTCACGTATGGTAAGCAATCC 58.472 45.455 0.00 0.00 0.00 3.01
5010 12281 3.055747 TGTCACGTATGGTAAGCAATCCA 60.056 43.478 0.00 0.00 38.14 3.41
5011 12282 3.936453 GTCACGTATGGTAAGCAATCCAA 59.064 43.478 0.00 0.00 37.27 3.53
5012 12283 3.936453 TCACGTATGGTAAGCAATCCAAC 59.064 43.478 0.00 0.00 37.27 3.77
5013 12284 3.064820 CACGTATGGTAAGCAATCCAACC 59.935 47.826 0.00 0.00 37.27 3.77
5014 12285 3.054655 ACGTATGGTAAGCAATCCAACCT 60.055 43.478 0.00 0.00 37.27 3.50
5015 12286 3.945285 CGTATGGTAAGCAATCCAACCTT 59.055 43.478 0.00 0.00 37.27 3.50
5016 12287 4.398044 CGTATGGTAAGCAATCCAACCTTT 59.602 41.667 0.00 0.00 37.27 3.11
5017 12288 4.806640 ATGGTAAGCAATCCAACCTTTG 57.193 40.909 0.00 0.00 37.27 2.77
5018 12289 3.838565 TGGTAAGCAATCCAACCTTTGA 58.161 40.909 0.00 0.00 32.99 2.69
5019 12290 4.219115 TGGTAAGCAATCCAACCTTTGAA 58.781 39.130 0.00 0.00 32.99 2.69
5020 12291 4.651503 TGGTAAGCAATCCAACCTTTGAAA 59.348 37.500 0.00 0.00 32.99 2.69
5021 12292 5.129485 TGGTAAGCAATCCAACCTTTGAAAA 59.871 36.000 0.00 0.00 32.99 2.29
5022 12293 6.052360 GGTAAGCAATCCAACCTTTGAAAAA 58.948 36.000 0.00 0.00 0.00 1.94
5048 12319 0.179137 TCATGTCACGTGATCGCTCC 60.179 55.000 23.12 8.13 41.18 4.70
5098 12370 5.470098 CAGTGACTTGTTTTACCTGCATAGT 59.530 40.000 0.00 0.00 0.00 2.12
5112 12384 4.074970 CTGCATAGTTGTTCCCTTGTTCT 58.925 43.478 0.00 0.00 0.00 3.01
5135 12407 4.729227 TGTTCGTGGCAGATATACTTGA 57.271 40.909 0.00 0.00 0.00 3.02
5241 12513 2.094026 GGTTCCCAGGAATTGTCATTGC 60.094 50.000 1.73 0.00 36.45 3.56
5251 12523 5.012354 AGGAATTGTCATTGCTGTCCAAAAT 59.988 36.000 0.00 0.00 39.48 1.82
5253 12525 6.873076 GGAATTGTCATTGCTGTCCAAAATAA 59.127 34.615 0.00 0.00 36.92 1.40
5256 12528 7.655236 TTGTCATTGCTGTCCAAAATAATTG 57.345 32.000 0.00 0.00 36.92 2.32
5258 12530 7.890515 TGTCATTGCTGTCCAAAATAATTGTA 58.109 30.769 0.00 0.00 36.92 2.41
5260 12532 8.647226 GTCATTGCTGTCCAAAATAATTGTAAC 58.353 33.333 0.00 0.00 36.92 2.50
5281 12553 4.298332 ACCGCAAATTTTTACTTGAGCTG 58.702 39.130 0.00 0.00 0.00 4.24
5287 12559 5.767816 AATTTTTACTTGAGCTGACCGTT 57.232 34.783 0.00 0.00 0.00 4.44
5288 12560 4.806342 TTTTTACTTGAGCTGACCGTTC 57.194 40.909 0.00 0.00 0.00 3.95
5289 12561 2.060326 TTACTTGAGCTGACCGTTCG 57.940 50.000 0.00 0.00 0.00 3.95
5290 12562 0.956633 TACTTGAGCTGACCGTTCGT 59.043 50.000 0.00 0.00 0.00 3.85
5291 12563 0.597637 ACTTGAGCTGACCGTTCGTG 60.598 55.000 0.00 0.00 0.00 4.35
5292 12564 0.597637 CTTGAGCTGACCGTTCGTGT 60.598 55.000 0.00 0.00 0.00 4.49
5293 12565 0.874175 TTGAGCTGACCGTTCGTGTG 60.874 55.000 0.00 0.00 0.00 3.82
5294 12566 1.007734 GAGCTGACCGTTCGTGTGA 60.008 57.895 0.00 0.00 0.00 3.58
5295 12567 0.596600 GAGCTGACCGTTCGTGTGAA 60.597 55.000 0.00 0.00 0.00 3.18
5296 12568 0.597637 AGCTGACCGTTCGTGTGAAG 60.598 55.000 0.00 0.00 33.98 3.02
5297 12569 0.874607 GCTGACCGTTCGTGTGAAGT 60.875 55.000 0.00 0.00 33.98 3.01
5298 12570 1.567504 CTGACCGTTCGTGTGAAGTT 58.432 50.000 0.00 0.00 33.98 2.66
5299 12571 1.931172 CTGACCGTTCGTGTGAAGTTT 59.069 47.619 0.00 0.00 33.98 2.66
5300 12572 1.661617 TGACCGTTCGTGTGAAGTTTG 59.338 47.619 0.00 0.00 33.98 2.93
5301 12573 1.928503 GACCGTTCGTGTGAAGTTTGA 59.071 47.619 0.00 0.00 33.98 2.69
5302 12574 1.662122 ACCGTTCGTGTGAAGTTTGAC 59.338 47.619 0.00 0.00 33.98 3.18
5303 12575 1.661617 CCGTTCGTGTGAAGTTTGACA 59.338 47.619 0.00 0.00 33.98 3.58
5304 12576 2.094575 CCGTTCGTGTGAAGTTTGACAA 59.905 45.455 0.00 0.00 33.98 3.18
5305 12577 3.425094 CCGTTCGTGTGAAGTTTGACAAA 60.425 43.478 0.00 0.00 33.98 2.83
5306 12578 3.778718 CGTTCGTGTGAAGTTTGACAAAG 59.221 43.478 0.00 0.00 33.98 2.77
5307 12579 4.668177 CGTTCGTGTGAAGTTTGACAAAGT 60.668 41.667 0.00 0.99 33.98 2.66
5308 12580 5.151389 GTTCGTGTGAAGTTTGACAAAGTT 58.849 37.500 18.72 18.72 36.76 2.66
5309 12581 6.308675 GTTCGTGTGAAGTTTGACAAAGTTA 58.691 36.000 18.68 3.63 34.32 2.24
5310 12582 6.102006 TCGTGTGAAGTTTGACAAAGTTAG 57.898 37.500 18.68 9.73 34.32 2.34
5311 12583 5.064198 TCGTGTGAAGTTTGACAAAGTTAGG 59.936 40.000 18.68 10.66 34.32 2.69
5312 12584 5.578776 GTGTGAAGTTTGACAAAGTTAGGG 58.421 41.667 18.68 0.00 34.32 3.53
5313 12585 4.097286 TGTGAAGTTTGACAAAGTTAGGGC 59.903 41.667 18.68 8.85 34.32 5.19
5314 12586 3.634910 TGAAGTTTGACAAAGTTAGGGCC 59.365 43.478 18.68 8.54 34.32 5.80
5315 12587 3.595190 AGTTTGACAAAGTTAGGGCCT 57.405 42.857 12.58 12.58 0.00 5.19
5316 12588 3.222603 AGTTTGACAAAGTTAGGGCCTG 58.777 45.455 18.53 0.53 0.00 4.85
5317 12589 2.956333 GTTTGACAAAGTTAGGGCCTGT 59.044 45.455 18.53 4.63 0.00 4.00
5318 12590 3.306472 TTGACAAAGTTAGGGCCTGTT 57.694 42.857 18.53 3.84 0.00 3.16
5319 12591 3.306472 TGACAAAGTTAGGGCCTGTTT 57.694 42.857 18.53 10.34 0.00 2.83
5320 12592 2.955660 TGACAAAGTTAGGGCCTGTTTG 59.044 45.455 24.83 24.83 34.85 2.93
5321 12593 3.219281 GACAAAGTTAGGGCCTGTTTGA 58.781 45.455 29.61 6.83 33.31 2.69
5322 12594 3.826729 GACAAAGTTAGGGCCTGTTTGAT 59.173 43.478 29.61 19.61 33.31 2.57
5323 12595 4.223144 ACAAAGTTAGGGCCTGTTTGATT 58.777 39.130 29.61 15.21 33.31 2.57
5324 12596 4.653801 ACAAAGTTAGGGCCTGTTTGATTT 59.346 37.500 29.61 15.64 33.31 2.17
5325 12597 5.221441 ACAAAGTTAGGGCCTGTTTGATTTC 60.221 40.000 29.61 8.76 33.31 2.17
5326 12598 4.112634 AGTTAGGGCCTGTTTGATTTCA 57.887 40.909 18.53 0.00 0.00 2.69
5327 12599 4.479158 AGTTAGGGCCTGTTTGATTTCAA 58.521 39.130 18.53 0.00 0.00 2.69
5328 12600 4.898861 AGTTAGGGCCTGTTTGATTTCAAA 59.101 37.500 18.53 1.66 42.90 2.69
5329 12601 5.543790 AGTTAGGGCCTGTTTGATTTCAAAT 59.456 36.000 18.53 0.00 46.12 2.32
5330 12602 6.723977 AGTTAGGGCCTGTTTGATTTCAAATA 59.276 34.615 18.53 5.78 46.12 1.40
5331 12603 7.234577 AGTTAGGGCCTGTTTGATTTCAAATAA 59.765 33.333 18.53 0.00 46.12 1.40
5332 12604 6.041423 AGGGCCTGTTTGATTTCAAATAAG 57.959 37.500 4.50 9.42 46.12 1.73
5333 12605 5.543790 AGGGCCTGTTTGATTTCAAATAAGT 59.456 36.000 4.50 0.00 46.12 2.24
5334 12606 5.869344 GGGCCTGTTTGATTTCAAATAAGTC 59.131 40.000 0.84 2.41 46.12 3.01
5335 12607 6.454795 GGCCTGTTTGATTTCAAATAAGTCA 58.545 36.000 8.82 2.05 46.12 3.41
5336 12608 6.366061 GGCCTGTTTGATTTCAAATAAGTCAC 59.634 38.462 8.82 0.00 46.12 3.67
5337 12609 6.366061 GCCTGTTTGATTTCAAATAAGTCACC 59.634 38.462 8.82 0.00 46.12 4.02
5338 12610 7.432869 CCTGTTTGATTTCAAATAAGTCACCA 58.567 34.615 8.82 0.22 46.12 4.17
5339 12611 7.925483 CCTGTTTGATTTCAAATAAGTCACCAA 59.075 33.333 8.82 0.00 46.12 3.67
5340 12612 8.641499 TGTTTGATTTCAAATAAGTCACCAAC 57.359 30.769 8.82 0.00 46.12 3.77
5341 12613 8.474025 TGTTTGATTTCAAATAAGTCACCAACT 58.526 29.630 8.82 0.00 46.12 3.16
5342 12614 9.313118 GTTTGATTTCAAATAAGTCACCAACTT 57.687 29.630 8.82 0.00 46.12 2.66
5356 12628 8.747538 AGTCACCAACTTATAAGTCAAAAAGT 57.252 30.769 18.28 7.29 38.57 2.66
5357 12629 8.621286 AGTCACCAACTTATAAGTCAAAAAGTG 58.379 33.333 18.28 16.78 38.57 3.16
5358 12630 8.617809 GTCACCAACTTATAAGTCAAAAAGTGA 58.382 33.333 18.28 18.36 38.57 3.41
5359 12631 9.179909 TCACCAACTTATAAGTCAAAAAGTGAA 57.820 29.630 18.28 7.64 38.57 3.18
5360 12632 9.796120 CACCAACTTATAAGTCAAAAAGTGAAA 57.204 29.630 18.28 0.00 38.57 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.242408 TAAGGGGTCCTCGGGGTACC 62.242 65.000 13.00 13.00 40.27 3.34
21 22 0.325577 TTAAGGGGTCCTCGGGGTAC 60.326 60.000 0.00 0.00 30.89 3.34
22 23 0.643822 ATTAAGGGGTCCTCGGGGTA 59.356 55.000 0.00 0.00 30.89 3.69
23 24 0.643822 TATTAAGGGGTCCTCGGGGT 59.356 55.000 0.00 0.00 30.89 4.95
24 25 1.054231 GTATTAAGGGGTCCTCGGGG 58.946 60.000 0.00 0.00 30.89 5.73
25 26 1.797320 TGTATTAAGGGGTCCTCGGG 58.203 55.000 0.00 0.00 30.89 5.14
26 27 2.969950 TCATGTATTAAGGGGTCCTCGG 59.030 50.000 0.00 0.00 30.89 4.63
27 28 3.641906 AGTCATGTATTAAGGGGTCCTCG 59.358 47.826 0.00 0.00 30.89 4.63
28 29 4.902448 AGAGTCATGTATTAAGGGGTCCTC 59.098 45.833 0.00 0.00 30.89 3.71
29 30 4.897051 AGAGTCATGTATTAAGGGGTCCT 58.103 43.478 0.00 0.00 33.87 3.85
30 31 4.902448 AGAGAGTCATGTATTAAGGGGTCC 59.098 45.833 0.00 0.00 0.00 4.46
31 32 5.598830 TGAGAGAGTCATGTATTAAGGGGTC 59.401 44.000 0.00 0.00 0.00 4.46
32 33 5.529289 TGAGAGAGTCATGTATTAAGGGGT 58.471 41.667 0.00 0.00 0.00 4.95
33 34 5.510520 GCTGAGAGAGTCATGTATTAAGGGG 60.511 48.000 0.00 0.00 33.51 4.79
34 35 5.510520 GGCTGAGAGAGTCATGTATTAAGGG 60.511 48.000 0.00 0.00 33.51 3.95
35 36 5.537188 GGCTGAGAGAGTCATGTATTAAGG 58.463 45.833 0.00 0.00 33.51 2.69
36 37 5.009110 TCGGCTGAGAGAGTCATGTATTAAG 59.991 44.000 0.00 0.00 33.51 1.85
37 38 4.887655 TCGGCTGAGAGAGTCATGTATTAA 59.112 41.667 0.00 0.00 33.51 1.40
38 39 4.276183 GTCGGCTGAGAGAGTCATGTATTA 59.724 45.833 0.00 0.00 33.51 0.98
39 40 3.067461 GTCGGCTGAGAGAGTCATGTATT 59.933 47.826 0.00 0.00 33.51 1.89
40 41 2.621055 GTCGGCTGAGAGAGTCATGTAT 59.379 50.000 0.00 0.00 33.51 2.29
41 42 2.017782 GTCGGCTGAGAGAGTCATGTA 58.982 52.381 0.00 0.00 33.51 2.29
42 43 0.814457 GTCGGCTGAGAGAGTCATGT 59.186 55.000 0.00 0.00 33.51 3.21
43 44 0.813821 TGTCGGCTGAGAGAGTCATG 59.186 55.000 0.00 0.00 33.51 3.07
44 45 0.814457 GTGTCGGCTGAGAGAGTCAT 59.186 55.000 0.00 0.00 33.51 3.06
45 46 0.250945 AGTGTCGGCTGAGAGAGTCA 60.251 55.000 0.00 0.00 0.00 3.41
46 47 1.740297 TAGTGTCGGCTGAGAGAGTC 58.260 55.000 0.00 0.00 0.00 3.36
47 48 1.813786 GTTAGTGTCGGCTGAGAGAGT 59.186 52.381 0.00 0.00 0.00 3.24
48 49 1.813178 TGTTAGTGTCGGCTGAGAGAG 59.187 52.381 0.00 0.00 0.00 3.20
49 50 1.905637 TGTTAGTGTCGGCTGAGAGA 58.094 50.000 0.00 0.00 0.00 3.10
50 51 2.288213 TGTTGTTAGTGTCGGCTGAGAG 60.288 50.000 0.00 0.00 0.00 3.20
51 52 1.684450 TGTTGTTAGTGTCGGCTGAGA 59.316 47.619 0.00 0.00 0.00 3.27
52 53 2.148916 TGTTGTTAGTGTCGGCTGAG 57.851 50.000 0.00 0.00 0.00 3.35
53 54 2.412870 CATGTTGTTAGTGTCGGCTGA 58.587 47.619 0.00 0.00 0.00 4.26
54 55 1.464608 CCATGTTGTTAGTGTCGGCTG 59.535 52.381 0.00 0.00 0.00 4.85
55 56 1.346395 TCCATGTTGTTAGTGTCGGCT 59.654 47.619 0.00 0.00 0.00 5.52
68 69 0.839277 TCGGCATCAGGATCCATGTT 59.161 50.000 15.82 1.96 0.00 2.71
69 70 0.395686 CTCGGCATCAGGATCCATGT 59.604 55.000 15.82 0.00 0.00 3.21
76 77 0.324368 ACCACTACTCGGCATCAGGA 60.324 55.000 0.00 0.00 0.00 3.86
80 81 2.950309 TCTAGAACCACTACTCGGCATC 59.050 50.000 0.00 0.00 0.00 3.91
144 145 9.529325 TTCAAACATAGTCGATAAATAGACTGG 57.471 33.333 13.90 9.40 46.07 4.00
155 156 9.398170 CAACTCAAAAATTCAAACATAGTCGAT 57.602 29.630 0.00 0.00 0.00 3.59
156 157 8.402472 ACAACTCAAAAATTCAAACATAGTCGA 58.598 29.630 0.00 0.00 0.00 4.20
157 158 8.560576 ACAACTCAAAAATTCAAACATAGTCG 57.439 30.769 0.00 0.00 0.00 4.18
212 213 2.035632 TGGAGCCAAACGGTTTCATTT 58.964 42.857 2.51 0.00 0.00 2.32
217 218 1.408969 AATGTGGAGCCAAACGGTTT 58.591 45.000 0.00 0.00 0.00 3.27
218 219 1.068434 CAAATGTGGAGCCAAACGGTT 59.932 47.619 0.00 0.00 0.00 4.44
219 220 0.673437 CAAATGTGGAGCCAAACGGT 59.327 50.000 0.00 0.00 0.00 4.83
220 221 0.673437 ACAAATGTGGAGCCAAACGG 59.327 50.000 0.00 0.00 0.00 4.44
221 222 3.004315 AGTTACAAATGTGGAGCCAAACG 59.996 43.478 0.00 0.00 0.00 3.60
269 275 7.489113 CCATTTGTCTAGCATACCATTTTTCAC 59.511 37.037 0.00 0.00 0.00 3.18
278 284 4.035208 CGTTTCCCATTTGTCTAGCATACC 59.965 45.833 0.00 0.00 0.00 2.73
279 285 4.873827 TCGTTTCCCATTTGTCTAGCATAC 59.126 41.667 0.00 0.00 0.00 2.39
295 301 1.389106 CGTCCTTCGATTGTCGTTTCC 59.611 52.381 0.00 0.00 41.35 3.13
300 306 2.165301 GGGCGTCCTTCGATTGTCG 61.165 63.158 0.00 0.00 42.86 4.35
318 324 5.342525 CAGCGCTAGTGTATCCGTTAAATAG 59.657 44.000 10.99 0.00 0.00 1.73
329 335 1.144057 GTGGGCAGCGCTAGTGTAT 59.856 57.895 10.99 0.00 0.00 2.29
330 336 2.577059 GTGGGCAGCGCTAGTGTA 59.423 61.111 10.99 0.00 0.00 2.90
336 342 4.927782 TTGTTCGTGGGCAGCGCT 62.928 61.111 2.64 2.64 0.00 5.92
381 387 5.590530 TTCAAAGCTGGAGCAACTTAAAA 57.409 34.783 0.65 0.00 45.16 1.52
384 390 5.590530 TTTTTCAAAGCTGGAGCAACTTA 57.409 34.783 0.65 0.00 45.16 2.24
385 391 4.470334 TTTTTCAAAGCTGGAGCAACTT 57.530 36.364 0.65 0.00 45.16 2.66
409 576 0.904865 TTCAGTGGCGGAGGACAGAT 60.905 55.000 0.00 0.00 0.00 2.90
410 577 1.118965 TTTCAGTGGCGGAGGACAGA 61.119 55.000 0.00 0.00 0.00 3.41
414 581 1.750341 TTCGTTTCAGTGGCGGAGGA 61.750 55.000 0.00 0.00 0.00 3.71
420 587 1.566018 CCGTCCTTCGTTTCAGTGGC 61.566 60.000 0.00 0.00 37.94 5.01
424 591 1.263217 CAAACCCGTCCTTCGTTTCAG 59.737 52.381 0.00 0.00 37.94 3.02
428 595 0.466963 ACTCAAACCCGTCCTTCGTT 59.533 50.000 0.00 0.00 37.94 3.85
431 598 0.534203 TGCACTCAAACCCGTCCTTC 60.534 55.000 0.00 0.00 0.00 3.46
434 601 1.305930 GGATGCACTCAAACCCGTCC 61.306 60.000 0.00 0.00 0.00 4.79
444 612 1.487976 TCATCTTCAGGGGATGCACTC 59.512 52.381 0.00 0.00 40.02 3.51
476 644 7.443879 TCAAACTTATGAACAACATAGACTGCA 59.556 33.333 0.00 0.00 41.64 4.41
477 645 7.806690 TCAAACTTATGAACAACATAGACTGC 58.193 34.615 0.00 0.00 41.64 4.40
479 647 9.725019 TGATCAAACTTATGAACAACATAGACT 57.275 29.630 0.00 0.00 41.64 3.24
483 651 9.986833 CGATTGATCAAACTTATGAACAACATA 57.013 29.630 13.09 0.00 42.46 2.29
484 652 8.514594 ACGATTGATCAAACTTATGAACAACAT 58.485 29.630 13.09 0.00 42.46 2.71
485 653 7.802720 CACGATTGATCAAACTTATGAACAACA 59.197 33.333 13.09 0.00 42.46 3.33
486 654 7.201266 GCACGATTGATCAAACTTATGAACAAC 60.201 37.037 13.09 0.00 42.46 3.32
492 660 5.065090 TGAGGCACGATTGATCAAACTTATG 59.935 40.000 13.09 9.22 0.00 1.90
497 665 2.476854 GCTGAGGCACGATTGATCAAAC 60.477 50.000 13.09 9.07 38.54 2.93
511 679 1.668047 GCAAGAACATGTTGCTGAGGC 60.668 52.381 17.58 12.83 45.67 4.70
515 683 1.265095 AGACGCAAGAACATGTTGCTG 59.735 47.619 17.58 13.40 46.73 4.41
517 685 2.412847 GGTAGACGCAAGAACATGTTGC 60.413 50.000 17.58 13.43 45.68 4.17
529 697 2.416296 CCTGTTTACGATGGTAGACGCA 60.416 50.000 4.49 0.00 36.73 5.24
530 698 2.159338 TCCTGTTTACGATGGTAGACGC 60.159 50.000 4.49 0.00 36.73 5.19
531 699 3.692576 CTCCTGTTTACGATGGTAGACG 58.307 50.000 4.49 0.00 36.73 4.18
537 705 2.225068 ATCGCTCCTGTTTACGATGG 57.775 50.000 0.00 0.00 43.13 3.51
538 706 4.600012 AAAATCGCTCCTGTTTACGATG 57.400 40.909 0.00 0.00 43.91 3.84
553 722 1.737236 TGATGCCGACAGGAAAAATCG 59.263 47.619 0.00 0.00 41.02 3.34
561 730 2.086869 ACAAAAGATGATGCCGACAGG 58.913 47.619 0.00 0.00 41.62 4.00
570 739 3.627395 TGGGTCGCTACAAAAGATGAT 57.373 42.857 0.00 0.00 0.00 2.45
580 749 1.026718 AAGCTGCATTGGGTCGCTAC 61.027 55.000 1.02 0.00 0.00 3.58
582 751 2.034687 AAGCTGCATTGGGTCGCT 59.965 55.556 1.02 0.00 0.00 4.93
583 752 2.180017 CAAGCTGCATTGGGTCGC 59.820 61.111 1.02 0.00 0.00 5.19
584 753 2.879907 CCAAGCTGCATTGGGTCG 59.120 61.111 17.66 0.00 45.07 4.79
599 813 7.380423 AAGCTAAGCTTCTTCTATAATCCCA 57.620 36.000 0.00 0.00 46.77 4.37
628 842 9.352191 ACCAGTACTACGTCTTGATCTTATAAT 57.648 33.333 0.00 0.00 0.00 1.28
629 843 8.618677 CACCAGTACTACGTCTTGATCTTATAA 58.381 37.037 0.00 0.00 0.00 0.98
630 844 7.772292 ACACCAGTACTACGTCTTGATCTTATA 59.228 37.037 0.00 0.00 0.00 0.98
631 845 6.602406 ACACCAGTACTACGTCTTGATCTTAT 59.398 38.462 0.00 0.00 0.00 1.73
689 904 0.768622 ACGGGGGTTTTGTGATGAGA 59.231 50.000 0.00 0.00 0.00 3.27
765 986 3.064324 GCTGGCCAGATTGCGGTT 61.064 61.111 37.21 0.00 0.00 4.44
790 1011 0.689055 TTCTGCTGACATGGCTGAGT 59.311 50.000 10.05 0.00 38.48 3.41
792 1013 0.321919 GGTTCTGCTGACATGGCTGA 60.322 55.000 10.05 3.84 36.23 4.26
1263 1493 2.178521 GCCGCGAAGAGAGTCGAA 59.821 61.111 8.23 0.00 43.86 3.71
1293 1523 1.807165 CACGCCGAGGATGTCAGTG 60.807 63.158 0.00 0.00 0.00 3.66
1350 1580 3.681835 GAGAGGGTGCACGACGGT 61.682 66.667 11.45 0.00 0.00 4.83
1353 1583 4.083862 GGGGAGAGGGTGCACGAC 62.084 72.222 11.45 6.40 0.00 4.34
1399 1629 2.960688 GCGCAAGGTCCTCCTCCTT 61.961 63.158 0.30 0.00 44.35 3.36
1400 1630 3.394836 GCGCAAGGTCCTCCTCCT 61.395 66.667 0.30 0.00 44.35 3.69
1401 1631 4.821589 CGCGCAAGGTCCTCCTCC 62.822 72.222 8.75 0.00 44.35 4.30
1633 1866 4.988598 CTTGGGCGTGACGTGGCT 62.989 66.667 6.91 0.00 0.00 4.75
1674 1907 1.152096 AGAGGACAAAGGGGGTCGT 60.152 57.895 0.00 0.00 36.12 4.34
1675 1908 1.597461 GAGAGGACAAAGGGGGTCG 59.403 63.158 0.00 0.00 36.12 4.79
1689 1922 1.820481 GTCCCTCCGACTCCGAGAG 60.820 68.421 1.33 0.00 38.57 3.20
1737 1970 1.891919 GAACACCTCCTGCAACGCA 60.892 57.895 0.00 0.00 36.92 5.24
1738 1971 2.946762 GAACACCTCCTGCAACGC 59.053 61.111 0.00 0.00 0.00 4.84
1822 2061 0.263765 TCCTTATACCGCCTCACCCT 59.736 55.000 0.00 0.00 0.00 4.34
1866 2105 1.008767 CTCGTACCGGATCCGCTTC 60.009 63.158 29.12 17.71 38.24 3.86
1953 2192 4.326504 AGGAAATTGCAACAAGTTCAGG 57.673 40.909 18.58 0.00 0.00 3.86
1968 2207 7.038302 TGTAGATCACAACCTCACTAAGGAAAT 60.038 37.037 0.00 0.00 40.15 2.17
1980 2219 5.620738 ATGCAGTATGTAGATCACAACCT 57.379 39.130 0.00 0.00 41.55 3.50
2003 2259 8.032952 CAGTTTTGCAGTTGAGATCATTACTA 57.967 34.615 0.00 0.00 0.00 1.82
2098 2354 9.365906 AGAAGCTGAATCTCTATTCTCTAATCA 57.634 33.333 0.00 0.00 41.83 2.57
2102 2358 7.066142 ACCAGAAGCTGAATCTCTATTCTCTA 58.934 38.462 0.00 0.00 41.83 2.43
2103 2359 5.898972 ACCAGAAGCTGAATCTCTATTCTCT 59.101 40.000 0.00 0.00 41.83 3.10
2104 2360 6.160576 ACCAGAAGCTGAATCTCTATTCTC 57.839 41.667 0.00 0.00 41.83 2.87
2105 2361 5.070313 GGACCAGAAGCTGAATCTCTATTCT 59.930 44.000 0.00 0.00 41.83 2.40
2106 2362 5.296748 GGACCAGAAGCTGAATCTCTATTC 58.703 45.833 0.00 0.00 41.69 1.75
2107 2363 4.102367 GGGACCAGAAGCTGAATCTCTATT 59.898 45.833 0.00 0.00 32.44 1.73
2150 2420 4.336433 ACGAAATTTGGCCTCTGTATGATG 59.664 41.667 3.32 0.00 0.00 3.07
2151 2421 4.336433 CACGAAATTTGGCCTCTGTATGAT 59.664 41.667 3.32 0.00 0.00 2.45
2152 2422 3.689161 CACGAAATTTGGCCTCTGTATGA 59.311 43.478 3.32 0.00 0.00 2.15
2153 2423 3.440173 ACACGAAATTTGGCCTCTGTATG 59.560 43.478 3.32 0.00 0.00 2.39
2154 2424 3.686016 ACACGAAATTTGGCCTCTGTAT 58.314 40.909 3.32 0.00 0.00 2.29
2155 2425 3.134574 ACACGAAATTTGGCCTCTGTA 57.865 42.857 3.32 0.00 0.00 2.74
2156 2426 1.981256 ACACGAAATTTGGCCTCTGT 58.019 45.000 3.32 0.00 0.00 3.41
2157 2427 3.369546 AAACACGAAATTTGGCCTCTG 57.630 42.857 3.32 0.00 0.00 3.35
2158 2428 3.383185 TCAAAACACGAAATTTGGCCTCT 59.617 39.130 3.32 0.00 37.19 3.69
2264 2535 1.294138 GCTGTGTAACCCTACCGCA 59.706 57.895 0.00 0.00 34.36 5.69
2308 2579 4.143333 CGTCCCCTCCGTCGCATT 62.143 66.667 0.00 0.00 0.00 3.56
2613 2889 7.095857 GCTGTTGTGCTTATCTATCTGTGATAC 60.096 40.741 0.00 0.00 0.00 2.24
3546 10513 1.001406 GGATCGAGATGGCTCCGAAAT 59.999 52.381 0.00 0.00 37.91 2.17
3914 10883 4.402793 TGAAAGTTTTTCGGGATTTGACCA 59.597 37.500 0.00 0.00 0.00 4.02
3932 10901 2.084546 GATCTGACCCCGGTTTGAAAG 58.915 52.381 0.00 0.00 0.00 2.62
4028 10999 8.138074 GGACCATAATTTTGAGGCTATCTTTTC 58.862 37.037 0.00 0.00 0.00 2.29
4029 11000 7.069950 GGGACCATAATTTTGAGGCTATCTTTT 59.930 37.037 0.00 0.00 0.00 2.27
4062 11033 7.381139 TCTTTGTAATCGTCAAATGAAAAAGGC 59.619 33.333 0.00 0.00 34.88 4.35
4084 11055 5.620206 TGTGTGAGGATGTGTGTATTCTTT 58.380 37.500 0.00 0.00 0.00 2.52
4123 11095 3.384789 AGATACTTGAGGCGCAGTATTCA 59.615 43.478 16.50 6.63 0.00 2.57
4203 11179 2.119801 ACTGAATGCGCAAGGAAGAT 57.880 45.000 17.11 0.00 45.01 2.40
4221 11197 1.726853 AGTCTGCACGCCAAAGATAC 58.273 50.000 0.00 0.00 0.00 2.24
4262 11239 5.239525 ACAAAATGGAGCAACTGACTAGTTC 59.760 40.000 0.00 0.00 45.12 3.01
4264 11241 4.718961 ACAAAATGGAGCAACTGACTAGT 58.281 39.130 0.00 0.00 39.32 2.57
4275 11252 8.937634 ATAAGATTGATGAAACAAAATGGAGC 57.062 30.769 0.00 0.00 33.44 4.70
4303 11280 2.536725 AGATGCACACAGCTTGTCG 58.463 52.632 0.00 0.00 40.37 4.35
4357 11334 1.337167 GCCATTGCAACACCTTCCTTC 60.337 52.381 0.00 0.00 37.47 3.46
4360 11337 1.293179 GGCCATTGCAACACCTTCC 59.707 57.895 0.00 0.00 40.13 3.46
4515 11492 2.098117 GGCAGATCGATTCAACAAAGGG 59.902 50.000 0.00 0.00 0.00 3.95
4516 11493 2.223112 CGGCAGATCGATTCAACAAAGG 60.223 50.000 0.00 0.00 0.00 3.11
4517 11494 2.416547 ACGGCAGATCGATTCAACAAAG 59.583 45.455 0.00 0.00 0.00 2.77
4650 11640 4.358851 CTCAAACCGAATCAAAAGTGCAA 58.641 39.130 0.00 0.00 0.00 4.08
4778 12049 8.693400 GAAGATCTTCCCGTATGTTGACAAACA 61.693 40.741 22.68 0.00 40.71 2.83
4779 12050 4.935808 AGATCTTCCCGTATGTTGACAAAC 59.064 41.667 0.00 0.00 36.78 2.93
4780 12051 5.160607 AGATCTTCCCGTATGTTGACAAA 57.839 39.130 0.00 0.00 0.00 2.83
4781 12052 4.819105 AGATCTTCCCGTATGTTGACAA 57.181 40.909 0.00 0.00 0.00 3.18
4782 12053 4.221924 TGAAGATCTTCCCGTATGTTGACA 59.778 41.667 28.40 6.76 38.77 3.58
4783 12054 4.755411 TGAAGATCTTCCCGTATGTTGAC 58.245 43.478 28.40 4.28 38.77 3.18
4784 12055 4.709886 TCTGAAGATCTTCCCGTATGTTGA 59.290 41.667 28.40 8.48 38.77 3.18
4785 12056 5.011090 TCTGAAGATCTTCCCGTATGTTG 57.989 43.478 28.40 10.23 38.77 3.33
4786 12057 5.677319 TTCTGAAGATCTTCCCGTATGTT 57.323 39.130 28.40 0.00 38.77 2.71
4787 12058 5.600484 AGATTCTGAAGATCTTCCCGTATGT 59.400 40.000 28.40 15.68 38.77 2.29
4788 12059 6.095432 AGATTCTGAAGATCTTCCCGTATG 57.905 41.667 28.40 13.65 38.77 2.39
4789 12060 5.048364 CGAGATTCTGAAGATCTTCCCGTAT 60.048 44.000 28.40 18.89 38.77 3.06
4790 12061 4.276183 CGAGATTCTGAAGATCTTCCCGTA 59.724 45.833 28.40 15.63 38.77 4.02
4791 12062 3.067461 CGAGATTCTGAAGATCTTCCCGT 59.933 47.826 28.40 14.35 38.77 5.28
4792 12063 3.637432 CGAGATTCTGAAGATCTTCCCG 58.363 50.000 28.40 20.22 38.77 5.14
4793 12064 3.389221 GCGAGATTCTGAAGATCTTCCC 58.611 50.000 28.40 14.32 38.77 3.97
4794 12065 3.049206 CGCGAGATTCTGAAGATCTTCC 58.951 50.000 28.40 15.00 38.77 3.46
4795 12066 3.049206 CCGCGAGATTCTGAAGATCTTC 58.951 50.000 25.68 25.68 39.91 2.87
4796 12067 2.428890 ACCGCGAGATTCTGAAGATCTT 59.571 45.455 8.23 7.95 0.00 2.40
4797 12068 2.028130 ACCGCGAGATTCTGAAGATCT 58.972 47.619 8.23 0.00 0.00 2.75
4798 12069 2.034053 AGACCGCGAGATTCTGAAGATC 59.966 50.000 8.23 0.00 0.00 2.75
4799 12070 2.028130 AGACCGCGAGATTCTGAAGAT 58.972 47.619 8.23 0.00 0.00 2.40
4800 12071 1.133216 CAGACCGCGAGATTCTGAAGA 59.867 52.381 8.23 0.00 41.09 2.87
4975 12246 5.288712 CCATACGTGACATGACTCTTAACAC 59.711 44.000 0.00 0.00 0.00 3.32
4982 12253 3.797256 GCTTACCATACGTGACATGACTC 59.203 47.826 0.00 0.00 0.00 3.36
4983 12254 3.194755 TGCTTACCATACGTGACATGACT 59.805 43.478 0.00 0.00 0.00 3.41
4984 12255 3.517602 TGCTTACCATACGTGACATGAC 58.482 45.455 0.00 0.00 0.00 3.06
4985 12256 3.878160 TGCTTACCATACGTGACATGA 57.122 42.857 0.00 0.00 0.00 3.07
4986 12257 4.024893 GGATTGCTTACCATACGTGACATG 60.025 45.833 0.00 0.00 0.00 3.21
4987 12258 4.127171 GGATTGCTTACCATACGTGACAT 58.873 43.478 0.00 0.00 0.00 3.06
4988 12259 3.055747 TGGATTGCTTACCATACGTGACA 60.056 43.478 0.00 0.00 0.00 3.58
4989 12260 3.527533 TGGATTGCTTACCATACGTGAC 58.472 45.455 0.00 0.00 0.00 3.67
4990 12261 3.897141 TGGATTGCTTACCATACGTGA 57.103 42.857 0.00 0.00 0.00 4.35
4991 12262 3.064820 GGTTGGATTGCTTACCATACGTG 59.935 47.826 0.00 0.00 36.02 4.49
4992 12263 3.054655 AGGTTGGATTGCTTACCATACGT 60.055 43.478 0.00 0.00 36.02 3.57
4993 12264 3.541632 AGGTTGGATTGCTTACCATACG 58.458 45.455 0.00 0.00 36.02 3.06
4994 12265 5.417580 TCAAAGGTTGGATTGCTTACCATAC 59.582 40.000 0.00 0.00 36.02 2.39
4995 12266 5.575157 TCAAAGGTTGGATTGCTTACCATA 58.425 37.500 0.00 0.00 36.02 2.74
4996 12267 4.415596 TCAAAGGTTGGATTGCTTACCAT 58.584 39.130 0.00 0.00 36.02 3.55
4997 12268 3.838565 TCAAAGGTTGGATTGCTTACCA 58.161 40.909 0.00 0.00 33.02 3.25
4998 12269 4.864704 TTCAAAGGTTGGATTGCTTACC 57.135 40.909 0.00 0.00 0.00 2.85
5021 12292 4.150627 CGATCACGTGACATGACTCTTTTT 59.849 41.667 22.71 0.00 34.56 1.94
5022 12293 3.675225 CGATCACGTGACATGACTCTTTT 59.325 43.478 22.71 0.00 34.56 2.27
5023 12294 3.245797 CGATCACGTGACATGACTCTTT 58.754 45.455 22.71 0.00 34.56 2.52
5024 12295 2.868662 CGATCACGTGACATGACTCTT 58.131 47.619 22.71 0.35 34.56 2.85
5025 12296 1.468224 GCGATCACGTGACATGACTCT 60.468 52.381 22.71 1.23 41.98 3.24
5048 12319 1.163554 GGACCAGAGCAAAAGCAGAG 58.836 55.000 0.00 0.00 0.00 3.35
5098 12370 3.759618 ACGAACAAAGAACAAGGGAACAA 59.240 39.130 0.00 0.00 0.00 2.83
5112 12384 5.483811 TCAAGTATATCTGCCACGAACAAA 58.516 37.500 0.00 0.00 0.00 2.83
5135 12407 1.453155 CCGCCACTGACAAATAAGCT 58.547 50.000 0.00 0.00 0.00 3.74
5189 12461 1.296392 CATCGGGTGTTGCTCCTCA 59.704 57.895 0.00 0.00 0.00 3.86
5241 12513 5.704888 TGCGGTTACAATTATTTTGGACAG 58.295 37.500 0.00 0.00 0.00 3.51
5251 12523 9.745880 TCAAGTAAAAATTTGCGGTTACAATTA 57.254 25.926 11.26 0.00 0.00 1.40
5253 12525 7.095816 GCTCAAGTAAAAATTTGCGGTTACAAT 60.096 33.333 11.26 0.63 0.00 2.71
5256 12528 5.918576 AGCTCAAGTAAAAATTTGCGGTTAC 59.081 36.000 0.00 0.00 0.00 2.50
5258 12530 4.744631 CAGCTCAAGTAAAAATTTGCGGTT 59.255 37.500 0.00 0.00 0.00 4.44
5260 12532 4.382754 GTCAGCTCAAGTAAAAATTTGCGG 59.617 41.667 0.00 0.00 0.00 5.69
5281 12553 1.928503 TCAAACTTCACACGAACGGTC 59.071 47.619 0.00 0.00 0.00 4.79
5287 12559 5.064198 CCTAACTTTGTCAAACTTCACACGA 59.936 40.000 0.00 0.00 0.00 4.35
5288 12560 5.263185 CCTAACTTTGTCAAACTTCACACG 58.737 41.667 0.00 0.00 0.00 4.49
5289 12561 5.578776 CCCTAACTTTGTCAAACTTCACAC 58.421 41.667 0.00 0.00 0.00 3.82
5290 12562 4.097286 GCCCTAACTTTGTCAAACTTCACA 59.903 41.667 0.00 0.00 0.00 3.58
5291 12563 4.499188 GGCCCTAACTTTGTCAAACTTCAC 60.499 45.833 0.00 0.00 0.00 3.18
5292 12564 3.634910 GGCCCTAACTTTGTCAAACTTCA 59.365 43.478 0.00 0.00 0.00 3.02
5293 12565 3.889538 AGGCCCTAACTTTGTCAAACTTC 59.110 43.478 0.00 0.00 0.00 3.01
5294 12566 3.636764 CAGGCCCTAACTTTGTCAAACTT 59.363 43.478 0.00 0.00 0.00 2.66
5295 12567 3.222603 CAGGCCCTAACTTTGTCAAACT 58.777 45.455 0.00 0.00 0.00 2.66
5296 12568 2.956333 ACAGGCCCTAACTTTGTCAAAC 59.044 45.455 0.00 0.00 0.00 2.93
5297 12569 3.306472 ACAGGCCCTAACTTTGTCAAA 57.694 42.857 0.00 0.00 0.00 2.69
5298 12570 3.306472 AACAGGCCCTAACTTTGTCAA 57.694 42.857 0.00 0.00 0.00 3.18
5299 12571 2.955660 CAAACAGGCCCTAACTTTGTCA 59.044 45.455 0.00 0.00 0.00 3.58
5300 12572 3.219281 TCAAACAGGCCCTAACTTTGTC 58.781 45.455 0.00 0.00 0.00 3.18
5301 12573 3.306472 TCAAACAGGCCCTAACTTTGT 57.694 42.857 0.00 0.00 0.00 2.83
5302 12574 4.871933 AATCAAACAGGCCCTAACTTTG 57.128 40.909 0.00 0.34 0.00 2.77
5303 12575 4.898861 TGAAATCAAACAGGCCCTAACTTT 59.101 37.500 0.00 0.00 0.00 2.66
5304 12576 4.479158 TGAAATCAAACAGGCCCTAACTT 58.521 39.130 0.00 0.00 0.00 2.66
5305 12577 4.112634 TGAAATCAAACAGGCCCTAACT 57.887 40.909 0.00 0.00 0.00 2.24
5306 12578 4.864704 TTGAAATCAAACAGGCCCTAAC 57.135 40.909 0.00 0.00 32.11 2.34
5315 12587 8.474025 AGTTGGTGACTTATTTGAAATCAAACA 58.526 29.630 10.54 0.00 41.12 2.83
5316 12588 8.871686 AGTTGGTGACTTATTTGAAATCAAAC 57.128 30.769 10.54 0.00 41.12 2.93
5331 12603 8.621286 CACTTTTTGACTTATAAGTTGGTGACT 58.379 33.333 18.96 0.00 39.88 3.41
5332 12604 8.617809 TCACTTTTTGACTTATAAGTTGGTGAC 58.382 33.333 18.96 6.23 39.88 3.67
5333 12605 8.740123 TCACTTTTTGACTTATAAGTTGGTGA 57.260 30.769 18.96 19.39 39.88 4.02
5334 12606 9.796120 TTTCACTTTTTGACTTATAAGTTGGTG 57.204 29.630 18.96 17.91 39.88 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.