Multiple sequence alignment - TraesCS7B01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G214400 chr7B 100.000 4711 0 0 1 4711 393392378 393397088 0.000000e+00 8700
1 TraesCS7B01G214400 chr7A 91.915 4193 168 55 598 4711 446357112 446361212 0.000000e+00 5707
2 TraesCS7B01G214400 chr7A 95.954 173 7 0 328 500 131815969 131816141 9.980000e-72 281
3 TraesCS7B01G214400 chr7A 94.444 180 10 0 325 504 50348608 50348429 1.290000e-70 278
4 TraesCS7B01G214400 chr7D 93.566 2922 116 24 1814 4711 393611825 393614698 0.000000e+00 4289
5 TraesCS7B01G214400 chr7D 91.186 1214 63 18 591 1795 393610596 393611774 0.000000e+00 1609
6 TraesCS7B01G214400 chr7D 91.765 85 5 1 494 576 393610527 393610611 2.980000e-22 117
7 TraesCS7B01G214400 chr3A 96.552 174 6 0 325 498 589599755 589599928 5.960000e-74 289
8 TraesCS7B01G214400 chr5B 96.000 175 6 1 329 502 320378878 320379052 2.780000e-72 283
9 TraesCS7B01G214400 chr5A 95.977 174 7 0 322 495 168437986 168438159 2.780000e-72 283
10 TraesCS7B01G214400 chr3B 94.475 181 7 3 322 500 45447706 45447527 4.640000e-70 276
11 TraesCS7B01G214400 chr6B 93.923 181 11 0 323 503 419776073 419775893 1.670000e-69 274
12 TraesCS7B01G214400 chr2A 92.268 194 11 4 311 502 326164075 326163884 6.010000e-69 272
13 TraesCS7B01G214400 chr2A 92.268 194 12 3 326 518 746687381 746687190 6.010000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G214400 chr7B 393392378 393397088 4710 False 8700 8700 100.000000 1 4711 1 chr7B.!!$F1 4710
1 TraesCS7B01G214400 chr7A 446357112 446361212 4100 False 5707 5707 91.915000 598 4711 1 chr7A.!!$F2 4113
2 TraesCS7B01G214400 chr7D 393610527 393614698 4171 False 2005 4289 92.172333 494 4711 3 chr7D.!!$F1 4217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.103390 GTTTTGGGTCGGGGTTGTTG 59.897 55.0 0.00 0.0 0.00 3.33 F
917 921 0.107361 GTATAAACCCCACCGCTGCT 60.107 55.0 0.00 0.0 0.00 4.24 F
1133 1152 0.392193 GTGAGGAGTAGACGGACGGA 60.392 60.0 0.00 0.0 0.00 4.69 F
1488 1523 0.460987 GAATCTCGTGGCAGAGGGTG 60.461 60.0 12.09 0.0 38.71 4.61 F
2181 2258 0.460987 CAGATGGACCAAGCCTCGTC 60.461 60.0 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1312 1331 0.319641 AGAGGAACGCGAAGAACACC 60.320 55.000 15.93 5.00 0.00 4.16 R
2617 2694 0.809636 TGTCTTGTATGCCGATGCCG 60.810 55.000 0.00 0.00 36.33 5.69 R
2634 2711 2.437359 GCCTTCTGCTGCCGATGT 60.437 61.111 0.00 0.00 36.87 3.06 R
3194 3271 0.251297 CACTCCCTGGCCAACATTCA 60.251 55.000 7.01 0.00 0.00 2.57 R
3844 3941 0.396139 ACCATCTTTGCCGGCATCAT 60.396 50.000 33.25 19.29 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.177394 TGTGTGTCGTATGCATTGGT 57.823 45.000 3.54 0.00 0.00 3.67
21 22 2.073056 TGTGTGTCGTATGCATTGGTC 58.927 47.619 3.54 0.00 0.00 4.02
22 23 2.073056 GTGTGTCGTATGCATTGGTCA 58.927 47.619 3.54 0.00 0.00 4.02
23 24 2.677836 GTGTGTCGTATGCATTGGTCAT 59.322 45.455 3.54 0.00 0.00 3.06
24 25 2.935849 TGTGTCGTATGCATTGGTCATC 59.064 45.455 3.54 0.00 0.00 2.92
25 26 2.033747 GTGTCGTATGCATTGGTCATCG 60.034 50.000 3.54 0.00 0.00 3.84
26 27 1.070577 GTCGTATGCATTGGTCATCGC 60.071 52.381 3.54 0.00 0.00 4.58
27 28 0.235665 CGTATGCATTGGTCATCGCC 59.764 55.000 3.54 0.00 0.00 5.54
28 29 0.235665 GTATGCATTGGTCATCGCCG 59.764 55.000 3.54 0.00 0.00 6.46
29 30 1.506309 TATGCATTGGTCATCGCCGC 61.506 55.000 3.54 0.00 0.00 6.53
30 31 3.204827 GCATTGGTCATCGCCGCT 61.205 61.111 0.00 0.00 0.00 5.52
31 32 2.711311 CATTGGTCATCGCCGCTG 59.289 61.111 0.00 0.00 0.00 5.18
32 33 2.108514 CATTGGTCATCGCCGCTGT 61.109 57.895 0.00 0.00 0.00 4.40
33 34 2.108514 ATTGGTCATCGCCGCTGTG 61.109 57.895 0.00 0.00 0.00 3.66
34 35 4.758251 TGGTCATCGCCGCTGTGG 62.758 66.667 2.05 2.05 42.50 4.17
35 36 4.451150 GGTCATCGCCGCTGTGGA 62.451 66.667 12.29 0.00 42.00 4.02
36 37 2.202932 GTCATCGCCGCTGTGGAT 60.203 61.111 12.29 0.00 42.00 3.41
37 38 2.106938 TCATCGCCGCTGTGGATC 59.893 61.111 12.29 0.00 42.00 3.36
38 39 2.969238 CATCGCCGCTGTGGATCC 60.969 66.667 12.29 4.20 42.00 3.36
39 40 3.469970 ATCGCCGCTGTGGATCCA 61.470 61.111 11.44 11.44 42.00 3.41
40 41 3.451556 ATCGCCGCTGTGGATCCAG 62.452 63.158 16.81 5.54 42.00 3.86
61 62 4.504916 CCGCTGCAGGTCGAGGAG 62.505 72.222 17.12 0.00 0.00 3.69
63 64 3.768922 GCTGCAGGTCGAGGAGCT 61.769 66.667 17.12 0.00 45.56 4.09
68 69 4.199804 AGGTCGAGGAGCTGTGTT 57.800 55.556 0.00 0.00 39.04 3.32
69 70 1.668294 AGGTCGAGGAGCTGTGTTG 59.332 57.895 0.00 0.00 39.04 3.33
70 71 2.029844 GGTCGAGGAGCTGTGTTGC 61.030 63.158 0.00 0.00 0.00 4.17
71 72 1.300931 GTCGAGGAGCTGTGTTGCA 60.301 57.895 0.00 0.00 34.99 4.08
82 83 2.049888 TGTGTTGCAGACATTGTGGA 57.950 45.000 0.00 0.00 41.10 4.02
83 84 2.585330 TGTGTTGCAGACATTGTGGAT 58.415 42.857 0.00 0.00 41.10 3.41
84 85 2.553602 TGTGTTGCAGACATTGTGGATC 59.446 45.455 0.00 0.00 41.10 3.36
85 86 2.095059 GTGTTGCAGACATTGTGGATCC 60.095 50.000 4.20 4.20 41.10 3.36
86 87 2.161855 GTTGCAGACATTGTGGATCCA 58.838 47.619 11.44 11.44 0.00 3.41
87 88 2.118313 TGCAGACATTGTGGATCCAG 57.882 50.000 16.81 5.86 0.00 3.86
88 89 0.737219 GCAGACATTGTGGATCCAGC 59.263 55.000 16.81 8.76 0.00 4.85
89 90 1.386533 CAGACATTGTGGATCCAGCC 58.613 55.000 16.81 4.84 0.00 4.85
90 91 0.107508 AGACATTGTGGATCCAGCCG 60.108 55.000 16.81 6.77 0.00 5.52
91 92 1.718757 GACATTGTGGATCCAGCCGC 61.719 60.000 16.81 3.57 38.91 6.53
92 93 2.514592 ATTGTGGATCCAGCCGCG 60.515 61.111 16.81 0.00 41.34 6.46
93 94 3.030168 ATTGTGGATCCAGCCGCGA 62.030 57.895 16.81 3.27 41.34 5.87
94 95 3.950794 TTGTGGATCCAGCCGCGAC 62.951 63.158 16.81 1.46 41.34 5.19
105 106 4.137872 CCGCGACCGCCTTCCTTA 62.138 66.667 8.23 0.00 37.98 2.69
106 107 2.884207 CGCGACCGCCTTCCTTAC 60.884 66.667 0.00 0.00 37.98 2.34
107 108 2.510918 GCGACCGCCTTCCTTACC 60.511 66.667 2.55 0.00 34.56 2.85
108 109 2.186125 CGACCGCCTTCCTTACCC 59.814 66.667 0.00 0.00 0.00 3.69
109 110 2.356780 CGACCGCCTTCCTTACCCT 61.357 63.158 0.00 0.00 0.00 4.34
110 111 1.039233 CGACCGCCTTCCTTACCCTA 61.039 60.000 0.00 0.00 0.00 3.53
111 112 0.751452 GACCGCCTTCCTTACCCTAG 59.249 60.000 0.00 0.00 0.00 3.02
112 113 1.335882 ACCGCCTTCCTTACCCTAGC 61.336 60.000 0.00 0.00 0.00 3.42
113 114 1.446366 CGCCTTCCTTACCCTAGCC 59.554 63.158 0.00 0.00 0.00 3.93
114 115 1.335132 CGCCTTCCTTACCCTAGCCA 61.335 60.000 0.00 0.00 0.00 4.75
115 116 0.180642 GCCTTCCTTACCCTAGCCAC 59.819 60.000 0.00 0.00 0.00 5.01
116 117 1.880941 CCTTCCTTACCCTAGCCACT 58.119 55.000 0.00 0.00 0.00 4.00
117 118 1.763545 CCTTCCTTACCCTAGCCACTC 59.236 57.143 0.00 0.00 0.00 3.51
118 119 2.627217 CCTTCCTTACCCTAGCCACTCT 60.627 54.545 0.00 0.00 0.00 3.24
119 120 2.160721 TCCTTACCCTAGCCACTCTG 57.839 55.000 0.00 0.00 0.00 3.35
120 121 0.466124 CCTTACCCTAGCCACTCTGC 59.534 60.000 0.00 0.00 0.00 4.26
121 122 1.195115 CTTACCCTAGCCACTCTGCA 58.805 55.000 0.00 0.00 0.00 4.41
122 123 1.555075 CTTACCCTAGCCACTCTGCAA 59.445 52.381 0.00 0.00 0.00 4.08
123 124 0.902531 TACCCTAGCCACTCTGCAAC 59.097 55.000 0.00 0.00 0.00 4.17
124 125 1.127567 ACCCTAGCCACTCTGCAACA 61.128 55.000 0.00 0.00 0.00 3.33
125 126 0.392193 CCCTAGCCACTCTGCAACAG 60.392 60.000 0.00 0.00 0.00 3.16
126 127 0.610174 CCTAGCCACTCTGCAACAGA 59.390 55.000 0.00 0.00 38.25 3.41
127 128 1.674221 CCTAGCCACTCTGCAACAGAC 60.674 57.143 0.00 0.00 35.39 3.51
128 129 1.274728 CTAGCCACTCTGCAACAGACT 59.725 52.381 0.00 0.00 35.39 3.24
129 130 1.342074 AGCCACTCTGCAACAGACTA 58.658 50.000 0.00 0.00 35.39 2.59
130 131 1.694150 AGCCACTCTGCAACAGACTAA 59.306 47.619 0.00 0.00 35.39 2.24
131 132 1.801178 GCCACTCTGCAACAGACTAAC 59.199 52.381 0.00 0.00 35.39 2.34
132 133 2.548920 GCCACTCTGCAACAGACTAACT 60.549 50.000 0.00 0.00 35.39 2.24
143 144 3.458189 ACAGACTAACTGACTGTTGTGC 58.542 45.455 7.89 0.00 46.31 4.57
144 145 3.133003 ACAGACTAACTGACTGTTGTGCT 59.867 43.478 7.89 0.21 46.31 4.40
145 146 4.383118 ACAGACTAACTGACTGTTGTGCTT 60.383 41.667 7.89 0.00 46.31 3.91
146 147 4.122776 AGACTAACTGACTGTTGTGCTTG 58.877 43.478 7.89 0.00 39.55 4.01
147 148 4.119862 GACTAACTGACTGTTGTGCTTGA 58.880 43.478 7.89 0.00 39.55 3.02
148 149 4.513442 ACTAACTGACTGTTGTGCTTGAA 58.487 39.130 7.89 0.00 39.55 2.69
149 150 4.941263 ACTAACTGACTGTTGTGCTTGAAA 59.059 37.500 7.89 0.00 39.55 2.69
150 151 4.361451 AACTGACTGTTGTGCTTGAAAG 57.639 40.909 0.00 0.00 37.52 2.62
151 152 2.684881 ACTGACTGTTGTGCTTGAAAGG 59.315 45.455 0.00 0.00 0.00 3.11
152 153 2.684881 CTGACTGTTGTGCTTGAAAGGT 59.315 45.455 0.00 0.00 0.00 3.50
153 154 3.088532 TGACTGTTGTGCTTGAAAGGTT 58.911 40.909 0.00 0.00 0.00 3.50
154 155 3.509575 TGACTGTTGTGCTTGAAAGGTTT 59.490 39.130 0.00 0.00 0.00 3.27
155 156 3.848726 ACTGTTGTGCTTGAAAGGTTTG 58.151 40.909 0.00 0.00 0.00 2.93
156 157 2.604462 CTGTTGTGCTTGAAAGGTTTGC 59.396 45.455 0.00 0.00 0.00 3.68
157 158 2.028658 TGTTGTGCTTGAAAGGTTTGCA 60.029 40.909 0.00 0.00 0.00 4.08
158 159 2.999355 GTTGTGCTTGAAAGGTTTGCAA 59.001 40.909 0.00 0.00 35.34 4.08
159 160 2.615869 TGTGCTTGAAAGGTTTGCAAC 58.384 42.857 0.00 0.00 35.34 4.17
160 161 2.028658 TGTGCTTGAAAGGTTTGCAACA 60.029 40.909 0.00 0.00 35.34 3.33
161 162 2.999355 GTGCTTGAAAGGTTTGCAACAA 59.001 40.909 0.00 0.00 35.34 2.83
162 163 3.062504 GTGCTTGAAAGGTTTGCAACAAG 59.937 43.478 16.70 16.70 38.07 3.16
163 164 2.609002 GCTTGAAAGGTTTGCAACAAGG 59.391 45.455 20.38 8.07 36.35 3.61
164 165 3.678529 GCTTGAAAGGTTTGCAACAAGGA 60.679 43.478 20.38 0.00 36.35 3.36
165 166 4.696455 CTTGAAAGGTTTGCAACAAGGAT 58.304 39.130 14.33 0.00 33.52 3.24
166 167 4.057406 TGAAAGGTTTGCAACAAGGATG 57.943 40.909 0.00 0.00 0.00 3.51
167 168 3.181467 TGAAAGGTTTGCAACAAGGATGG 60.181 43.478 0.00 0.00 0.00 3.51
168 169 2.086610 AGGTTTGCAACAAGGATGGT 57.913 45.000 0.00 0.00 0.00 3.55
170 171 1.412343 GGTTTGCAACAAGGATGGTGT 59.588 47.619 0.00 0.00 46.40 4.16
171 172 2.158971 GGTTTGCAACAAGGATGGTGTT 60.159 45.455 0.00 0.00 46.40 3.32
175 176 2.886862 CAACAAGGATGGTGTTGCAA 57.113 45.000 0.00 0.00 46.63 4.08
176 177 3.176552 CAACAAGGATGGTGTTGCAAA 57.823 42.857 0.00 0.00 46.63 3.68
177 178 3.529533 CAACAAGGATGGTGTTGCAAAA 58.470 40.909 0.00 0.00 46.63 2.44
178 179 3.177997 ACAAGGATGGTGTTGCAAAAC 57.822 42.857 11.58 11.58 0.00 2.43
179 180 2.765699 ACAAGGATGGTGTTGCAAAACT 59.234 40.909 19.06 0.03 0.00 2.66
180 181 3.181476 ACAAGGATGGTGTTGCAAAACTC 60.181 43.478 19.06 9.77 0.00 3.01
181 182 1.608590 AGGATGGTGTTGCAAAACTCG 59.391 47.619 19.06 0.00 0.00 4.18
182 183 1.336755 GGATGGTGTTGCAAAACTCGT 59.663 47.619 19.06 10.59 0.00 4.18
183 184 2.223711 GGATGGTGTTGCAAAACTCGTT 60.224 45.455 19.06 2.28 0.00 3.85
184 185 3.443976 GATGGTGTTGCAAAACTCGTTT 58.556 40.909 19.06 0.57 0.00 3.60
185 186 3.305398 TGGTGTTGCAAAACTCGTTTT 57.695 38.095 19.06 2.12 42.91 2.43
193 194 1.026584 AAAACTCGTTTTGGGTCGGG 58.973 50.000 6.95 0.00 40.84 5.14
194 195 0.820482 AAACTCGTTTTGGGTCGGGG 60.820 55.000 0.00 0.00 0.00 5.73
195 196 1.986632 AACTCGTTTTGGGTCGGGGT 61.987 55.000 0.00 0.00 0.00 4.95
196 197 1.228033 CTCGTTTTGGGTCGGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
197 198 1.512156 CTCGTTTTGGGTCGGGGTTG 61.512 60.000 0.00 0.00 0.00 3.77
198 199 1.824760 CGTTTTGGGTCGGGGTTGT 60.825 57.895 0.00 0.00 0.00 3.32
199 200 1.385756 CGTTTTGGGTCGGGGTTGTT 61.386 55.000 0.00 0.00 0.00 2.83
200 201 0.103390 GTTTTGGGTCGGGGTTGTTG 59.897 55.000 0.00 0.00 0.00 3.33
201 202 1.677637 TTTTGGGTCGGGGTTGTTGC 61.678 55.000 0.00 0.00 0.00 4.17
202 203 4.939368 TGGGTCGGGGTTGTTGCG 62.939 66.667 0.00 0.00 0.00 4.85
205 206 4.941309 GTCGGGGTTGTTGCGGGT 62.941 66.667 0.00 0.00 0.00 5.28
206 207 4.629523 TCGGGGTTGTTGCGGGTC 62.630 66.667 0.00 0.00 0.00 4.46
208 209 4.941309 GGGGTTGTTGCGGGTCGT 62.941 66.667 0.00 0.00 0.00 4.34
209 210 3.351416 GGGTTGTTGCGGGTCGTC 61.351 66.667 0.00 0.00 0.00 4.20
210 211 3.708734 GGTTGTTGCGGGTCGTCG 61.709 66.667 0.00 0.00 0.00 5.12
211 212 3.708734 GTTGTTGCGGGTCGTCGG 61.709 66.667 0.00 0.00 0.00 4.79
212 213 3.914117 TTGTTGCGGGTCGTCGGA 61.914 61.111 0.00 0.00 0.00 4.55
213 214 3.229156 TTGTTGCGGGTCGTCGGAT 62.229 57.895 0.00 0.00 0.00 4.18
214 215 2.884207 GTTGCGGGTCGTCGGATC 60.884 66.667 0.00 0.00 0.00 3.36
215 216 3.375239 TTGCGGGTCGTCGGATCA 61.375 61.111 0.00 0.00 0.00 2.92
216 217 3.350909 TTGCGGGTCGTCGGATCAG 62.351 63.158 0.00 0.00 0.00 2.90
217 218 3.515286 GCGGGTCGTCGGATCAGA 61.515 66.667 0.00 0.00 0.00 3.27
218 219 2.846652 GCGGGTCGTCGGATCAGAT 61.847 63.158 0.00 0.00 0.00 2.90
219 220 1.734137 CGGGTCGTCGGATCAGATT 59.266 57.895 0.00 0.00 0.00 2.40
220 221 0.317938 CGGGTCGTCGGATCAGATTC 60.318 60.000 0.00 0.00 0.00 2.52
221 222 1.033574 GGGTCGTCGGATCAGATTCT 58.966 55.000 0.00 0.00 0.00 2.40
222 223 1.269309 GGGTCGTCGGATCAGATTCTG 60.269 57.143 7.38 7.38 0.00 3.02
223 224 1.676529 GGTCGTCGGATCAGATTCTGA 59.323 52.381 18.29 18.29 44.99 3.27
233 234 3.652057 TCAGATTCTGATTTGGGGTCC 57.348 47.619 12.38 0.00 35.39 4.46
234 235 2.242196 TCAGATTCTGATTTGGGGTCCC 59.758 50.000 12.38 0.00 35.39 4.46
235 236 1.212935 AGATTCTGATTTGGGGTCCCG 59.787 52.381 0.48 0.00 39.42 5.14
236 237 1.211949 GATTCTGATTTGGGGTCCCGA 59.788 52.381 0.48 0.00 39.42 5.14
237 238 0.618458 TTCTGATTTGGGGTCCCGAG 59.382 55.000 0.48 0.00 39.42 4.63
238 239 1.224592 CTGATTTGGGGTCCCGAGG 59.775 63.158 0.48 0.00 39.42 4.63
239 240 2.124278 GATTTGGGGTCCCGAGGC 60.124 66.667 0.48 0.00 39.42 4.70
240 241 4.109675 ATTTGGGGTCCCGAGGCG 62.110 66.667 0.48 0.00 39.42 5.52
258 259 3.774702 GTCGACCCGCGCAAAGTC 61.775 66.667 8.75 9.84 40.61 3.01
259 260 4.287781 TCGACCCGCGCAAAGTCA 62.288 61.111 18.11 6.07 40.61 3.41
260 261 3.118454 CGACCCGCGCAAAGTCAT 61.118 61.111 18.11 0.00 0.00 3.06
261 262 2.785258 GACCCGCGCAAAGTCATC 59.215 61.111 8.75 0.00 0.00 2.92
262 263 2.031919 ACCCGCGCAAAGTCATCA 59.968 55.556 8.75 0.00 0.00 3.07
263 264 1.573829 GACCCGCGCAAAGTCATCAA 61.574 55.000 8.75 0.00 0.00 2.57
264 265 0.960364 ACCCGCGCAAAGTCATCAAT 60.960 50.000 8.75 0.00 0.00 2.57
265 266 0.248215 CCCGCGCAAAGTCATCAATC 60.248 55.000 8.75 0.00 0.00 2.67
266 267 0.447406 CCGCGCAAAGTCATCAATCA 59.553 50.000 8.75 0.00 0.00 2.57
267 268 1.530441 CCGCGCAAAGTCATCAATCAG 60.530 52.381 8.75 0.00 0.00 2.90
268 269 1.530441 CGCGCAAAGTCATCAATCAGG 60.530 52.381 8.75 0.00 0.00 3.86
269 270 1.796617 GCGCAAAGTCATCAATCAGGC 60.797 52.381 0.30 0.00 0.00 4.85
270 271 1.530441 CGCAAAGTCATCAATCAGGCG 60.530 52.381 0.00 0.00 35.87 5.52
271 272 1.739466 GCAAAGTCATCAATCAGGCGA 59.261 47.619 0.00 0.00 0.00 5.54
272 273 2.357009 GCAAAGTCATCAATCAGGCGAT 59.643 45.455 0.00 0.00 0.00 4.58
273 274 3.181493 GCAAAGTCATCAATCAGGCGATT 60.181 43.478 0.00 0.00 42.81 3.34
286 287 4.717927 CGATTGTGCGCGCAACGT 62.718 61.111 38.24 23.08 46.11 3.99
287 288 2.865151 GATTGTGCGCGCAACGTC 60.865 61.111 38.24 26.52 46.11 4.34
288 289 3.571959 GATTGTGCGCGCAACGTCA 62.572 57.895 38.24 26.56 46.11 4.35
289 290 2.832818 GATTGTGCGCGCAACGTCAT 62.833 55.000 38.24 21.56 46.11 3.06
290 291 2.832818 ATTGTGCGCGCAACGTCATC 62.833 55.000 38.24 21.98 46.11 2.92
291 292 4.070818 GTGCGCGCAACGTCATCA 62.071 61.111 38.24 6.62 46.11 3.07
292 293 3.341835 TGCGCGCAACGTCATCAA 61.342 55.556 34.66 3.17 46.11 2.57
293 294 2.098298 GCGCGCAACGTCATCAAT 59.902 55.556 29.10 0.00 46.11 2.57
294 295 1.929714 GCGCGCAACGTCATCAATC 60.930 57.895 29.10 0.00 46.11 2.67
295 296 1.419532 CGCGCAACGTCATCAATCA 59.580 52.632 8.75 0.00 36.87 2.57
296 297 0.179227 CGCGCAACGTCATCAATCAA 60.179 50.000 8.75 0.00 36.87 2.57
297 298 1.250476 GCGCAACGTCATCAATCAAC 58.750 50.000 0.30 0.00 0.00 3.18
298 299 1.135972 GCGCAACGTCATCAATCAACT 60.136 47.619 0.30 0.00 0.00 3.16
299 300 2.498905 CGCAACGTCATCAATCAACTG 58.501 47.619 0.00 0.00 0.00 3.16
300 301 2.157474 CGCAACGTCATCAATCAACTGA 59.843 45.455 0.00 0.00 0.00 3.41
301 302 3.722957 CGCAACGTCATCAATCAACTGAG 60.723 47.826 0.00 0.00 0.00 3.35
302 303 3.740590 CAACGTCATCAATCAACTGAGC 58.259 45.455 0.00 0.00 0.00 4.26
303 304 1.995484 ACGTCATCAATCAACTGAGCG 59.005 47.619 0.00 0.00 0.00 5.03
304 305 1.325640 CGTCATCAATCAACTGAGCGG 59.674 52.381 0.00 0.00 0.00 5.52
305 306 2.350522 GTCATCAATCAACTGAGCGGT 58.649 47.619 0.00 0.00 0.00 5.68
306 307 2.349886 GTCATCAATCAACTGAGCGGTC 59.650 50.000 7.89 7.89 0.00 4.79
307 308 2.234661 TCATCAATCAACTGAGCGGTCT 59.765 45.455 16.64 0.00 0.00 3.85
308 309 2.839486 TCAATCAACTGAGCGGTCTT 57.161 45.000 16.64 0.00 0.00 3.01
309 310 2.688507 TCAATCAACTGAGCGGTCTTC 58.311 47.619 16.64 0.00 0.00 2.87
310 311 2.300152 TCAATCAACTGAGCGGTCTTCT 59.700 45.455 16.64 0.00 0.00 2.85
311 312 3.070018 CAATCAACTGAGCGGTCTTCTT 58.930 45.455 16.64 1.35 0.00 2.52
312 313 2.440539 TCAACTGAGCGGTCTTCTTC 57.559 50.000 16.64 0.00 0.00 2.87
313 314 1.964223 TCAACTGAGCGGTCTTCTTCT 59.036 47.619 16.64 0.00 0.00 2.85
314 315 2.029828 TCAACTGAGCGGTCTTCTTCTC 60.030 50.000 16.64 0.00 0.00 2.87
315 316 1.917872 ACTGAGCGGTCTTCTTCTCT 58.082 50.000 16.64 0.00 0.00 3.10
316 317 1.816224 ACTGAGCGGTCTTCTTCTCTC 59.184 52.381 16.64 0.00 0.00 3.20
317 318 1.815613 CTGAGCGGTCTTCTTCTCTCA 59.184 52.381 16.64 0.00 0.00 3.27
318 319 1.542030 TGAGCGGTCTTCTTCTCTCAC 59.458 52.381 16.64 0.00 0.00 3.51
319 320 0.892063 AGCGGTCTTCTTCTCTCACC 59.108 55.000 0.00 0.00 0.00 4.02
320 321 0.892063 GCGGTCTTCTTCTCTCACCT 59.108 55.000 0.00 0.00 0.00 4.00
321 322 1.135228 GCGGTCTTCTTCTCTCACCTC 60.135 57.143 0.00 0.00 0.00 3.85
322 323 2.163509 CGGTCTTCTTCTCTCACCTCA 58.836 52.381 0.00 0.00 0.00 3.86
323 324 2.558795 CGGTCTTCTTCTCTCACCTCAA 59.441 50.000 0.00 0.00 0.00 3.02
324 325 3.194542 CGGTCTTCTTCTCTCACCTCAAT 59.805 47.826 0.00 0.00 0.00 2.57
325 326 4.399618 CGGTCTTCTTCTCTCACCTCAATA 59.600 45.833 0.00 0.00 0.00 1.90
326 327 5.105716 CGGTCTTCTTCTCTCACCTCAATAA 60.106 44.000 0.00 0.00 0.00 1.40
327 328 6.572509 CGGTCTTCTTCTCTCACCTCAATAAA 60.573 42.308 0.00 0.00 0.00 1.40
328 329 7.334858 GGTCTTCTTCTCTCACCTCAATAAAT 58.665 38.462 0.00 0.00 0.00 1.40
329 330 7.826744 GGTCTTCTTCTCTCACCTCAATAAATT 59.173 37.037 0.00 0.00 0.00 1.82
330 331 9.877178 GTCTTCTTCTCTCACCTCAATAAATTA 57.123 33.333 0.00 0.00 0.00 1.40
337 338 8.871125 TCTCTCACCTCAATAAATTATACTCCC 58.129 37.037 0.00 0.00 0.00 4.30
338 339 8.798975 TCTCACCTCAATAAATTATACTCCCT 57.201 34.615 0.00 0.00 0.00 4.20
339 340 8.871125 TCTCACCTCAATAAATTATACTCCCTC 58.129 37.037 0.00 0.00 0.00 4.30
340 341 7.974504 TCACCTCAATAAATTATACTCCCTCC 58.025 38.462 0.00 0.00 0.00 4.30
341 342 6.874134 CACCTCAATAAATTATACTCCCTCCG 59.126 42.308 0.00 0.00 0.00 4.63
342 343 6.557633 ACCTCAATAAATTATACTCCCTCCGT 59.442 38.462 0.00 0.00 0.00 4.69
343 344 7.072076 ACCTCAATAAATTATACTCCCTCCGTT 59.928 37.037 0.00 0.00 0.00 4.44
344 345 7.603024 CCTCAATAAATTATACTCCCTCCGTTC 59.397 40.741 0.00 0.00 0.00 3.95
345 346 7.447594 TCAATAAATTATACTCCCTCCGTTCC 58.552 38.462 0.00 0.00 0.00 3.62
346 347 7.291651 TCAATAAATTATACTCCCTCCGTTCCT 59.708 37.037 0.00 0.00 0.00 3.36
347 348 8.591072 CAATAAATTATACTCCCTCCGTTCCTA 58.409 37.037 0.00 0.00 0.00 2.94
348 349 8.731591 ATAAATTATACTCCCTCCGTTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
349 350 7.441903 AAATTATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
350 351 7.628501 AATTATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
351 352 8.731591 AATTATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
352 353 7.530426 TTATACTCCCTCCGTTCCTAAATAC 57.470 40.000 0.00 0.00 0.00 1.89
353 354 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
354 355 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
355 356 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
356 357 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
357 358 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
358 359 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
359 360 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
360 361 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
361 362 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
362 363 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
363 364 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
364 365 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
365 366 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
366 367 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
367 368 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
368 369 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
369 370 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
370 371 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
372 373 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
373 374 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
374 375 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
375 376 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
376 377 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
377 378 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
378 379 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
379 380 6.995686 TGTCTTTCTAGGCATTTCAACAAGTA 59.004 34.615 0.00 0.00 29.10 2.24
380 381 7.500892 TGTCTTTCTAGGCATTTCAACAAGTAA 59.499 33.333 0.00 0.00 29.10 2.24
381 382 7.803659 GTCTTTCTAGGCATTTCAACAAGTAAC 59.196 37.037 0.00 0.00 0.00 2.50
382 383 7.719633 TCTTTCTAGGCATTTCAACAAGTAACT 59.280 33.333 0.00 0.00 0.00 2.24
383 384 8.911918 TTTCTAGGCATTTCAACAAGTAACTA 57.088 30.769 0.00 0.00 0.00 2.24
384 385 7.900782 TCTAGGCATTTCAACAAGTAACTAC 57.099 36.000 0.00 0.00 0.00 2.73
385 386 7.446769 TCTAGGCATTTCAACAAGTAACTACA 58.553 34.615 0.00 0.00 0.00 2.74
386 387 8.100791 TCTAGGCATTTCAACAAGTAACTACAT 58.899 33.333 0.00 0.00 0.00 2.29
387 388 9.378551 CTAGGCATTTCAACAAGTAACTACATA 57.621 33.333 0.00 0.00 0.00 2.29
388 389 8.040716 AGGCATTTCAACAAGTAACTACATAC 57.959 34.615 0.00 0.00 0.00 2.39
389 390 6.959311 GGCATTTCAACAAGTAACTACATACG 59.041 38.462 0.00 0.00 0.00 3.06
390 391 7.148540 GGCATTTCAACAAGTAACTACATACGA 60.149 37.037 0.00 0.00 0.00 3.43
391 392 8.225107 GCATTTCAACAAGTAACTACATACGAA 58.775 33.333 0.00 0.00 0.00 3.85
392 393 9.741168 CATTTCAACAAGTAACTACATACGAAG 57.259 33.333 0.00 0.00 0.00 3.79
393 394 6.939551 TCAACAAGTAACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
394 395 6.448852 TCAACAAGTAACTACATACGAAGCA 58.551 36.000 0.00 0.00 0.00 3.91
395 396 6.924612 TCAACAAGTAACTACATACGAAGCAA 59.075 34.615 0.00 0.00 0.00 3.91
396 397 7.438757 TCAACAAGTAACTACATACGAAGCAAA 59.561 33.333 0.00 0.00 0.00 3.68
397 398 7.718272 ACAAGTAACTACATACGAAGCAAAA 57.282 32.000 0.00 0.00 0.00 2.44
398 399 8.319143 ACAAGTAACTACATACGAAGCAAAAT 57.681 30.769 0.00 0.00 0.00 1.82
399 400 9.426837 ACAAGTAACTACATACGAAGCAAAATA 57.573 29.630 0.00 0.00 0.00 1.40
486 487 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
487 488 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
488 489 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
489 490 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
490 491 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
491 492 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
492 493 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
500 501 7.441903 TTTAGGAACGGAGGGAGTATATTTT 57.558 36.000 0.00 0.00 0.00 1.82
522 523 6.985188 TTATTCTCCTCCAAGAAATTCACG 57.015 37.500 0.00 0.00 38.69 4.35
554 555 1.335810 CATGGCATATGTGGTGAGCAC 59.664 52.381 8.00 8.00 0.00 4.40
564 565 3.034924 GGTGAGCACCCATGAAACA 57.965 52.632 8.48 0.00 45.68 2.83
565 566 1.327303 GGTGAGCACCCATGAAACAA 58.673 50.000 8.48 0.00 45.68 2.83
566 567 1.000274 GGTGAGCACCCATGAAACAAC 60.000 52.381 8.48 0.00 45.68 3.32
567 568 1.680735 GTGAGCACCCATGAAACAACA 59.319 47.619 0.00 0.00 0.00 3.33
568 569 2.100584 GTGAGCACCCATGAAACAACAA 59.899 45.455 0.00 0.00 0.00 2.83
569 570 2.762887 TGAGCACCCATGAAACAACAAA 59.237 40.909 0.00 0.00 0.00 2.83
570 571 3.196469 TGAGCACCCATGAAACAACAAAA 59.804 39.130 0.00 0.00 0.00 2.44
571 572 3.795877 AGCACCCATGAAACAACAAAAG 58.204 40.909 0.00 0.00 0.00 2.27
572 573 2.871633 GCACCCATGAAACAACAAAAGG 59.128 45.455 0.00 0.00 0.00 3.11
573 574 3.431486 GCACCCATGAAACAACAAAAGGA 60.431 43.478 0.00 0.00 0.00 3.36
574 575 4.764172 CACCCATGAAACAACAAAAGGAA 58.236 39.130 0.00 0.00 0.00 3.36
575 576 5.181748 CACCCATGAAACAACAAAAGGAAA 58.818 37.500 0.00 0.00 0.00 3.13
576 577 5.064579 CACCCATGAAACAACAAAAGGAAAC 59.935 40.000 0.00 0.00 0.00 2.78
578 579 5.523552 CCCATGAAACAACAAAAGGAAACTC 59.476 40.000 0.00 0.00 42.68 3.01
579 580 6.340522 CCATGAAACAACAAAAGGAAACTCT 58.659 36.000 0.00 0.00 42.68 3.24
580 581 6.818142 CCATGAAACAACAAAAGGAAACTCTT 59.182 34.615 0.00 0.00 42.68 2.85
581 582 7.334171 CCATGAAACAACAAAAGGAAACTCTTT 59.666 33.333 0.00 0.00 42.68 2.52
582 583 7.650834 TGAAACAACAAAAGGAAACTCTTTG 57.349 32.000 0.00 0.00 42.68 2.77
583 584 7.213678 TGAAACAACAAAAGGAAACTCTTTGT 58.786 30.769 0.00 0.00 45.20 2.83
584 585 7.383843 TGAAACAACAAAAGGAAACTCTTTGTC 59.616 33.333 0.34 0.00 43.90 3.18
585 586 5.720202 ACAACAAAAGGAAACTCTTTGTCC 58.280 37.500 0.34 0.00 43.90 4.02
586 587 5.245075 ACAACAAAAGGAAACTCTTTGTCCA 59.755 36.000 0.34 0.00 43.90 4.02
587 588 5.993748 ACAAAAGGAAACTCTTTGTCCAA 57.006 34.783 0.00 0.00 42.54 3.53
588 589 6.353404 ACAAAAGGAAACTCTTTGTCCAAA 57.647 33.333 0.00 0.00 42.54 3.28
589 590 6.163476 ACAAAAGGAAACTCTTTGTCCAAAC 58.837 36.000 0.00 0.00 42.54 2.93
622 623 9.369904 CAAAAGGAAATTCCGAAATGAACATAT 57.630 29.630 6.35 0.00 42.75 1.78
628 629 8.746052 AAATTCCGAAATGAACATATAGGACA 57.254 30.769 0.00 0.00 0.00 4.02
762 763 0.320374 CTAAACGCACCTGTCTCCCA 59.680 55.000 0.00 0.00 0.00 4.37
818 819 1.229336 CCTGTCAGTGAGGGGTCCT 60.229 63.158 0.00 0.00 36.03 3.85
840 841 1.668294 CCTCACAGTCTGGAACGCT 59.332 57.895 4.53 0.00 0.00 5.07
917 921 0.107361 GTATAAACCCCACCGCTGCT 60.107 55.000 0.00 0.00 0.00 4.24
1024 1036 3.036429 GCATCGAGGGAGGGTGCTT 62.036 63.158 0.00 0.00 33.25 3.91
1099 1115 1.202394 CCTTCTCGTGGATCTGAGCTG 60.202 57.143 0.00 0.00 32.20 4.24
1107 1123 0.463474 GGATCTGAGCTGTTCCTGCC 60.463 60.000 0.00 0.00 0.00 4.85
1123 1142 2.038329 CCGGGGTGGTGAGGAGTA 59.962 66.667 0.00 0.00 0.00 2.59
1133 1152 0.392193 GTGAGGAGTAGACGGACGGA 60.392 60.000 0.00 0.00 0.00 4.69
1237 1256 4.388499 GCGGCAAACGGAGGAGGA 62.388 66.667 0.00 0.00 44.51 3.71
1238 1257 2.125512 CGGCAAACGGAGGAGGAG 60.126 66.667 0.00 0.00 39.42 3.69
1239 1258 2.269241 GGCAAACGGAGGAGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
1240 1259 2.291043 GGCAAACGGAGGAGGAGGA 61.291 63.158 0.00 0.00 0.00 3.71
1241 1260 1.219393 GCAAACGGAGGAGGAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
1447 1472 5.776716 CGGTTTGGGATTAGGTAGGATAGTA 59.223 44.000 0.00 0.00 0.00 1.82
1482 1517 2.579201 ACGGGAATCTCGTGGCAG 59.421 61.111 7.63 0.00 39.55 4.85
1483 1518 1.982395 ACGGGAATCTCGTGGCAGA 60.982 57.895 7.63 0.00 39.55 4.26
1484 1519 1.227089 CGGGAATCTCGTGGCAGAG 60.227 63.158 0.00 7.40 39.52 3.35
1485 1520 1.144936 GGGAATCTCGTGGCAGAGG 59.855 63.158 12.09 0.00 38.71 3.69
1486 1521 1.144936 GGAATCTCGTGGCAGAGGG 59.855 63.158 12.09 0.00 38.71 4.30
1487 1522 1.617947 GGAATCTCGTGGCAGAGGGT 61.618 60.000 12.09 3.34 38.71 4.34
1488 1523 0.460987 GAATCTCGTGGCAGAGGGTG 60.461 60.000 12.09 0.00 38.71 4.61
1489 1524 1.903877 AATCTCGTGGCAGAGGGTGG 61.904 60.000 12.09 0.00 38.71 4.61
1502 1537 1.284785 GAGGGTGGTGGGATCATTTCA 59.715 52.381 0.00 0.00 0.00 2.69
1533 1568 7.636259 TTTGACAGAAAGAACACACAAAAAG 57.364 32.000 0.00 0.00 0.00 2.27
1535 1570 6.976088 TGACAGAAAGAACACACAAAAAGAA 58.024 32.000 0.00 0.00 0.00 2.52
1537 1572 6.744112 ACAGAAAGAACACACAAAAAGAACA 58.256 32.000 0.00 0.00 0.00 3.18
1596 1634 4.970662 ATCGTCTGGATGGTGAAAAATG 57.029 40.909 0.00 0.00 32.92 2.32
1608 1646 4.099266 TGGTGAAAAATGGAAGTTGGACTG 59.901 41.667 0.00 0.00 0.00 3.51
1684 1722 5.786401 AATTGCAGTTCTTATCACTCGAC 57.214 39.130 0.00 0.00 0.00 4.20
1756 1798 1.066645 CCAGTCAGTCACATGCTGCTA 60.067 52.381 0.00 0.00 34.21 3.49
1787 1831 5.605534 ACTGATTGATCCCAGAATAGAACG 58.394 41.667 12.09 0.00 34.65 3.95
2002 2079 2.258286 GTGCCGGCACCATTTCAC 59.742 61.111 43.24 20.48 40.79 3.18
2181 2258 0.460987 CAGATGGACCAAGCCTCGTC 60.461 60.000 0.00 0.00 0.00 4.20
2394 2471 3.172106 TTTGGCCGGGACCTGTCA 61.172 61.111 2.18 0.00 0.00 3.58
2436 2513 1.529010 CCCTGTGGTTTCTGCTGCA 60.529 57.895 0.88 0.88 0.00 4.41
2439 2516 0.740149 CTGTGGTTTCTGCTGCACAA 59.260 50.000 0.00 0.00 0.00 3.33
2607 2684 1.228245 GCAACCAGAGCCACTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
2617 2694 3.200165 AGAGCCACTTCCAAGGTATAACC 59.800 47.826 0.00 0.00 38.99 2.85
2634 2711 4.436515 CGGCATCGGCATACAAGA 57.563 55.556 0.00 0.00 43.71 3.02
2651 2728 2.437359 ACATCGGCAGCAGAAGGC 60.437 61.111 0.00 0.00 45.30 4.35
2766 2843 5.470098 GTGGTTCATCTATGACAACAACAGT 59.530 40.000 0.00 0.00 36.36 3.55
3194 3271 5.032846 TCTGAAGGAAGGGATGAAGTATGT 58.967 41.667 0.00 0.00 0.00 2.29
3441 3518 4.291540 TGTGCACAAAGAATTCACAGAC 57.708 40.909 19.28 0.00 33.33 3.51
3483 3560 0.106149 GGTAGATGGGTAAGCACGGG 59.894 60.000 0.00 0.00 0.00 5.28
3572 3660 5.231568 CGAAATTAAGTTAGGTGGTAGAGCG 59.768 44.000 0.00 0.00 0.00 5.03
3576 3664 0.525029 GTTAGGTGGTAGAGCGTCGC 60.525 60.000 9.80 9.80 0.00 5.19
3589 3677 6.860023 GGTAGAGCGTCGCTATATTTTTAGAA 59.140 38.462 23.05 0.00 39.88 2.10
3590 3678 7.541437 GGTAGAGCGTCGCTATATTTTTAGAAT 59.459 37.037 23.05 0.00 39.88 2.40
3728 3816 7.118825 CACTGTTGAAAGAGAGAATGCATAGAA 59.881 37.037 0.00 0.00 0.00 2.10
3744 3841 5.183713 TGCATAGAATGACTTTGTTTCCCTG 59.816 40.000 0.00 0.00 31.78 4.45
3745 3842 5.415701 GCATAGAATGACTTTGTTTCCCTGA 59.584 40.000 0.00 0.00 31.78 3.86
3748 3845 5.449553 AGAATGACTTTGTTTCCCTGAGTT 58.550 37.500 0.00 0.00 0.00 3.01
3826 3923 4.868172 TCATCCCCAATCTGAAATCTGT 57.132 40.909 0.00 0.00 0.00 3.41
3836 3933 4.685169 TCTGAAATCTGTCGCAAATTCC 57.315 40.909 0.00 0.00 0.00 3.01
3853 3958 2.566833 TCCTTATGGAATGATGCCGG 57.433 50.000 0.00 0.00 39.87 6.13
3864 3969 1.314534 TGATGCCGGCAAAGATGGTG 61.315 55.000 36.33 0.00 0.00 4.17
3881 3986 1.885887 GGTGCACCTTGCTTGATGTAA 59.114 47.619 29.12 0.00 45.31 2.41
3883 3988 3.694072 GGTGCACCTTGCTTGATGTAATA 59.306 43.478 29.12 0.00 45.31 0.98
3969 4074 7.790782 TCTATATAGTACATGATGGCAACCA 57.209 36.000 9.58 0.00 38.19 3.67
4026 4132 4.335416 CTTTGGGAAAGTGCCATTCTCTA 58.665 43.478 0.00 0.00 37.82 2.43
4041 4147 6.072783 GCCATTCTCTATCAAACCAGCTATTC 60.073 42.308 0.00 0.00 0.00 1.75
4042 4148 7.222872 CCATTCTCTATCAAACCAGCTATTCT 58.777 38.462 0.00 0.00 0.00 2.40
4043 4149 7.387397 CCATTCTCTATCAAACCAGCTATTCTC 59.613 40.741 0.00 0.00 0.00 2.87
4078 4184 9.430838 CAAATAGAGAAATCAAATCTAACGCAG 57.569 33.333 0.00 0.00 0.00 5.18
4163 4269 3.685139 TGCGTTCTTCTCCATCTTTCT 57.315 42.857 0.00 0.00 0.00 2.52
4166 4272 5.547465 TGCGTTCTTCTCCATCTTTCTTTA 58.453 37.500 0.00 0.00 0.00 1.85
4167 4273 5.408604 TGCGTTCTTCTCCATCTTTCTTTAC 59.591 40.000 0.00 0.00 0.00 2.01
4168 4274 5.639931 GCGTTCTTCTCCATCTTTCTTTACT 59.360 40.000 0.00 0.00 0.00 2.24
4169 4275 6.401581 GCGTTCTTCTCCATCTTTCTTTACTG 60.402 42.308 0.00 0.00 0.00 2.74
4170 4276 6.868864 CGTTCTTCTCCATCTTTCTTTACTGA 59.131 38.462 0.00 0.00 0.00 3.41
4171 4277 7.062839 CGTTCTTCTCCATCTTTCTTTACTGAG 59.937 40.741 0.00 0.00 0.00 3.35
4172 4278 6.940739 TCTTCTCCATCTTTCTTTACTGAGG 58.059 40.000 0.00 0.00 0.00 3.86
4173 4279 6.498651 TCTTCTCCATCTTTCTTTACTGAGGT 59.501 38.462 0.00 0.00 0.00 3.85
4174 4280 6.688073 TCTCCATCTTTCTTTACTGAGGTT 57.312 37.500 0.00 0.00 0.00 3.50
4175 4281 7.079451 TCTCCATCTTTCTTTACTGAGGTTT 57.921 36.000 0.00 0.00 0.00 3.27
4176 4282 6.936900 TCTCCATCTTTCTTTACTGAGGTTTG 59.063 38.462 0.00 0.00 0.00 2.93
4177 4283 6.003950 TCCATCTTTCTTTACTGAGGTTTGG 58.996 40.000 0.00 0.00 0.00 3.28
4178 4284 5.770162 CCATCTTTCTTTACTGAGGTTTGGT 59.230 40.000 0.00 0.00 0.00 3.67
4179 4285 6.265422 CCATCTTTCTTTACTGAGGTTTGGTT 59.735 38.462 0.00 0.00 0.00 3.67
4180 4286 7.447238 CCATCTTTCTTTACTGAGGTTTGGTTA 59.553 37.037 0.00 0.00 0.00 2.85
4181 4287 7.797038 TCTTTCTTTACTGAGGTTTGGTTAC 57.203 36.000 0.00 0.00 0.00 2.50
4182 4288 7.571025 TCTTTCTTTACTGAGGTTTGGTTACT 58.429 34.615 0.00 0.00 0.00 2.24
4183 4289 8.050930 TCTTTCTTTACTGAGGTTTGGTTACTT 58.949 33.333 0.00 0.00 0.00 2.24
4184 4290 7.797038 TTCTTTACTGAGGTTTGGTTACTTC 57.203 36.000 0.00 0.00 0.00 3.01
4210 4316 3.819337 GAGGTTTCAGAGGTTTGGTTACC 59.181 47.826 0.00 0.00 38.53 2.85
4309 4415 9.515226 TGAAATGTACTGCCTTCTTACTTTATT 57.485 29.630 0.00 0.00 0.00 1.40
4453 4569 8.793592 CCTAATAGTTAAAAGTCAAAGCAAGGT 58.206 33.333 0.00 0.00 0.00 3.50
4575 4692 1.072965 CTGGACAAGAACCCAAGAGCT 59.927 52.381 0.00 0.00 31.11 4.09
4596 4713 1.003355 CTGGCGAGTGTGGATTGGT 60.003 57.895 0.00 0.00 0.00 3.67
4622 4739 3.329889 TTCTGGGGATGCTGCCGT 61.330 61.111 0.00 0.00 0.00 5.68
4623 4740 3.626996 TTCTGGGGATGCTGCCGTG 62.627 63.158 0.00 0.00 0.00 4.94
4667 4784 6.223138 TGAGTAAACTACACATTTTGAGCG 57.777 37.500 0.00 0.00 0.00 5.03
4707 4824 3.037249 GTGCGCCGTCGGTTTACA 61.037 61.111 13.94 3.40 35.95 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.073056 GACCAATGCATACGACACACA 58.927 47.619 0.00 0.00 0.00 3.72
2 3 2.073056 TGACCAATGCATACGACACAC 58.927 47.619 0.00 0.00 0.00 3.82
3 4 2.464157 TGACCAATGCATACGACACA 57.536 45.000 0.00 0.00 0.00 3.72
5 6 2.200899 CGATGACCAATGCATACGACA 58.799 47.619 0.00 0.00 0.00 4.35
6 7 1.070577 GCGATGACCAATGCATACGAC 60.071 52.381 0.00 0.00 0.00 4.34
7 8 1.217001 GCGATGACCAATGCATACGA 58.783 50.000 0.00 0.00 0.00 3.43
8 9 0.235665 GGCGATGACCAATGCATACG 59.764 55.000 0.00 0.00 0.00 3.06
9 10 0.235665 CGGCGATGACCAATGCATAC 59.764 55.000 0.00 0.00 0.00 2.39
10 11 1.506309 GCGGCGATGACCAATGCATA 61.506 55.000 12.98 0.00 0.00 3.14
11 12 2.837883 GCGGCGATGACCAATGCAT 61.838 57.895 12.98 0.00 0.00 3.96
12 13 3.507924 GCGGCGATGACCAATGCA 61.508 61.111 12.98 0.00 0.00 3.96
13 14 3.204827 AGCGGCGATGACCAATGC 61.205 61.111 12.98 0.00 0.00 3.56
14 15 2.108514 ACAGCGGCGATGACCAATG 61.109 57.895 33.22 3.03 0.00 2.82
15 16 2.108514 CACAGCGGCGATGACCAAT 61.109 57.895 33.22 5.63 0.00 3.16
16 17 2.741985 CACAGCGGCGATGACCAA 60.742 61.111 33.22 0.00 0.00 3.67
17 18 4.758251 CCACAGCGGCGATGACCA 62.758 66.667 33.22 0.00 0.00 4.02
18 19 3.740128 ATCCACAGCGGCGATGACC 62.740 63.158 33.22 2.04 33.14 4.02
19 20 2.202932 ATCCACAGCGGCGATGAC 60.203 61.111 33.22 2.50 33.14 3.06
20 21 2.106938 GATCCACAGCGGCGATGA 59.893 61.111 33.22 10.21 33.14 2.92
21 22 2.969238 GGATCCACAGCGGCGATG 60.969 66.667 24.95 24.95 33.14 3.84
22 23 3.451556 CTGGATCCACAGCGGCGAT 62.452 63.158 11.44 0.00 33.14 4.58
23 24 4.147449 CTGGATCCACAGCGGCGA 62.147 66.667 11.44 0.00 33.14 5.54
44 45 4.504916 CTCCTCGACCTGCAGCGG 62.505 72.222 8.66 0.00 0.00 5.52
46 47 3.768922 AGCTCCTCGACCTGCAGC 61.769 66.667 8.66 0.00 0.00 5.25
47 48 2.183811 CAGCTCCTCGACCTGCAG 59.816 66.667 6.78 6.78 0.00 4.41
48 49 2.601666 ACAGCTCCTCGACCTGCA 60.602 61.111 0.00 0.00 0.00 4.41
49 50 2.125753 CACAGCTCCTCGACCTGC 60.126 66.667 0.00 0.00 0.00 4.85
50 51 0.668706 CAACACAGCTCCTCGACCTG 60.669 60.000 0.00 0.00 0.00 4.00
51 52 1.668294 CAACACAGCTCCTCGACCT 59.332 57.895 0.00 0.00 0.00 3.85
52 53 2.029844 GCAACACAGCTCCTCGACC 61.030 63.158 0.00 0.00 0.00 4.79
53 54 1.287730 CTGCAACACAGCTCCTCGAC 61.288 60.000 0.00 0.00 40.19 4.20
54 55 1.005748 CTGCAACACAGCTCCTCGA 60.006 57.895 0.00 0.00 40.19 4.04
55 56 1.005748 TCTGCAACACAGCTCCTCG 60.006 57.895 0.00 0.00 46.76 4.63
56 57 0.250038 TGTCTGCAACACAGCTCCTC 60.250 55.000 0.00 0.00 46.76 3.71
57 58 0.399454 ATGTCTGCAACACAGCTCCT 59.601 50.000 4.58 0.00 46.76 3.69
58 59 1.068748 CAATGTCTGCAACACAGCTCC 60.069 52.381 4.58 0.00 46.76 4.70
59 60 1.605710 ACAATGTCTGCAACACAGCTC 59.394 47.619 4.58 0.00 46.76 4.09
60 61 1.335810 CACAATGTCTGCAACACAGCT 59.664 47.619 4.58 0.00 46.76 4.24
61 62 1.601162 CCACAATGTCTGCAACACAGC 60.601 52.381 4.58 0.00 46.76 4.40
63 64 2.049888 TCCACAATGTCTGCAACACA 57.950 45.000 0.77 0.77 41.75 3.72
64 65 2.095059 GGATCCACAATGTCTGCAACAC 60.095 50.000 6.95 0.00 41.75 3.32
65 66 2.161855 GGATCCACAATGTCTGCAACA 58.838 47.619 6.95 4.56 43.51 3.33
66 67 2.161855 TGGATCCACAATGTCTGCAAC 58.838 47.619 11.44 0.00 0.00 4.17
67 68 2.439409 CTGGATCCACAATGTCTGCAA 58.561 47.619 11.44 0.00 0.00 4.08
68 69 1.951895 GCTGGATCCACAATGTCTGCA 60.952 52.381 11.44 0.00 0.00 4.41
69 70 0.737219 GCTGGATCCACAATGTCTGC 59.263 55.000 11.44 6.46 0.00 4.26
70 71 1.386533 GGCTGGATCCACAATGTCTG 58.613 55.000 11.44 0.00 0.00 3.51
71 72 0.107508 CGGCTGGATCCACAATGTCT 60.108 55.000 11.44 0.00 0.00 3.41
72 73 1.718757 GCGGCTGGATCCACAATGTC 61.719 60.000 11.44 1.15 0.00 3.06
73 74 1.750399 GCGGCTGGATCCACAATGT 60.750 57.895 11.44 0.00 0.00 2.71
74 75 2.827051 CGCGGCTGGATCCACAATG 61.827 63.158 11.44 1.77 0.00 2.82
75 76 2.514592 CGCGGCTGGATCCACAAT 60.515 61.111 11.44 0.00 0.00 2.71
76 77 3.700970 TCGCGGCTGGATCCACAA 61.701 61.111 11.44 0.00 0.00 3.33
77 78 4.451150 GTCGCGGCTGGATCCACA 62.451 66.667 11.44 0.00 0.00 4.17
88 89 4.137872 TAAGGAAGGCGGTCGCGG 62.138 66.667 6.13 0.00 43.06 6.46
89 90 2.884207 GTAAGGAAGGCGGTCGCG 60.884 66.667 0.00 0.00 43.06 5.87
90 91 2.510918 GGTAAGGAAGGCGGTCGC 60.511 66.667 6.83 6.83 41.06 5.19
91 92 1.039233 TAGGGTAAGGAAGGCGGTCG 61.039 60.000 0.00 0.00 0.00 4.79
92 93 0.751452 CTAGGGTAAGGAAGGCGGTC 59.249 60.000 0.00 0.00 0.00 4.79
93 94 1.335882 GCTAGGGTAAGGAAGGCGGT 61.336 60.000 0.00 0.00 0.00 5.68
94 95 1.446366 GCTAGGGTAAGGAAGGCGG 59.554 63.158 0.00 0.00 0.00 6.13
95 96 1.335132 TGGCTAGGGTAAGGAAGGCG 61.335 60.000 0.00 0.00 37.34 5.52
96 97 0.180642 GTGGCTAGGGTAAGGAAGGC 59.819 60.000 0.00 0.00 35.26 4.35
97 98 1.763545 GAGTGGCTAGGGTAAGGAAGG 59.236 57.143 0.00 0.00 0.00 3.46
98 99 2.432510 CAGAGTGGCTAGGGTAAGGAAG 59.567 54.545 0.00 0.00 0.00 3.46
99 100 2.467880 CAGAGTGGCTAGGGTAAGGAA 58.532 52.381 0.00 0.00 0.00 3.36
100 101 1.965318 GCAGAGTGGCTAGGGTAAGGA 60.965 57.143 0.00 0.00 0.00 3.36
101 102 0.466124 GCAGAGTGGCTAGGGTAAGG 59.534 60.000 0.00 0.00 0.00 2.69
102 103 1.195115 TGCAGAGTGGCTAGGGTAAG 58.805 55.000 0.00 0.00 34.04 2.34
103 104 1.278127 GTTGCAGAGTGGCTAGGGTAA 59.722 52.381 0.00 0.00 34.04 2.85
104 105 0.902531 GTTGCAGAGTGGCTAGGGTA 59.097 55.000 0.00 0.00 34.04 3.69
105 106 1.127567 TGTTGCAGAGTGGCTAGGGT 61.128 55.000 0.00 0.00 34.04 4.34
106 107 0.392193 CTGTTGCAGAGTGGCTAGGG 60.392 60.000 0.00 0.00 32.44 3.53
107 108 0.610174 TCTGTTGCAGAGTGGCTAGG 59.390 55.000 0.00 0.00 35.39 3.02
108 109 1.274728 AGTCTGTTGCAGAGTGGCTAG 59.725 52.381 5.76 0.00 41.89 3.42
109 110 1.342074 AGTCTGTTGCAGAGTGGCTA 58.658 50.000 5.76 0.00 41.89 3.93
110 111 1.342074 TAGTCTGTTGCAGAGTGGCT 58.658 50.000 14.65 4.93 43.12 4.75
111 112 1.801178 GTTAGTCTGTTGCAGAGTGGC 59.199 52.381 14.65 5.64 43.12 5.01
112 113 3.062763 CAGTTAGTCTGTTGCAGAGTGG 58.937 50.000 14.65 1.36 43.12 4.00
113 114 3.738282 GTCAGTTAGTCTGTTGCAGAGTG 59.262 47.826 14.65 1.66 43.12 3.51
114 115 3.639094 AGTCAGTTAGTCTGTTGCAGAGT 59.361 43.478 10.76 10.76 44.98 3.24
115 116 3.986572 CAGTCAGTTAGTCTGTTGCAGAG 59.013 47.826 0.00 0.00 41.46 3.35
116 117 3.384789 ACAGTCAGTTAGTCTGTTGCAGA 59.615 43.478 0.00 0.00 42.69 4.26
117 118 3.722147 ACAGTCAGTTAGTCTGTTGCAG 58.278 45.455 0.00 0.00 42.69 4.41
118 119 3.819564 ACAGTCAGTTAGTCTGTTGCA 57.180 42.857 0.00 0.00 42.69 4.08
122 123 3.133003 AGCACAACAGTCAGTTAGTCTGT 59.867 43.478 0.00 0.00 46.32 3.41
123 124 3.722147 AGCACAACAGTCAGTTAGTCTG 58.278 45.455 0.00 0.00 44.85 3.51
124 125 4.122776 CAAGCACAACAGTCAGTTAGTCT 58.877 43.478 0.00 0.00 38.74 3.24
125 126 4.119862 TCAAGCACAACAGTCAGTTAGTC 58.880 43.478 0.00 0.00 38.74 2.59
126 127 4.137116 TCAAGCACAACAGTCAGTTAGT 57.863 40.909 0.00 0.00 38.74 2.24
127 128 5.484173 TTTCAAGCACAACAGTCAGTTAG 57.516 39.130 0.00 0.00 38.74 2.34
128 129 4.335315 CCTTTCAAGCACAACAGTCAGTTA 59.665 41.667 0.00 0.00 38.74 2.24
129 130 3.129287 CCTTTCAAGCACAACAGTCAGTT 59.871 43.478 0.00 0.00 42.42 3.16
130 131 2.684881 CCTTTCAAGCACAACAGTCAGT 59.315 45.455 0.00 0.00 0.00 3.41
131 132 2.684881 ACCTTTCAAGCACAACAGTCAG 59.315 45.455 0.00 0.00 0.00 3.51
132 133 2.722094 ACCTTTCAAGCACAACAGTCA 58.278 42.857 0.00 0.00 0.00 3.41
133 134 3.782889 AACCTTTCAAGCACAACAGTC 57.217 42.857 0.00 0.00 0.00 3.51
134 135 3.848726 CAAACCTTTCAAGCACAACAGT 58.151 40.909 0.00 0.00 0.00 3.55
135 136 2.604462 GCAAACCTTTCAAGCACAACAG 59.396 45.455 0.00 0.00 0.00 3.16
136 137 2.028658 TGCAAACCTTTCAAGCACAACA 60.029 40.909 0.00 0.00 0.00 3.33
137 138 2.615869 TGCAAACCTTTCAAGCACAAC 58.384 42.857 0.00 0.00 0.00 3.32
138 139 2.999355 GTTGCAAACCTTTCAAGCACAA 59.001 40.909 0.00 0.00 42.21 3.33
139 140 2.615869 GTTGCAAACCTTTCAAGCACA 58.384 42.857 0.00 0.00 42.21 4.57
151 152 2.865551 CAACACCATCCTTGTTGCAAAC 59.134 45.455 0.00 0.00 45.36 2.93
152 153 3.176552 CAACACCATCCTTGTTGCAAA 57.823 42.857 0.00 0.00 45.36 3.68
153 154 2.886862 CAACACCATCCTTGTTGCAA 57.113 45.000 0.00 0.00 45.36 4.08
157 158 3.197549 AGTTTTGCAACACCATCCTTGTT 59.802 39.130 12.02 0.00 37.69 2.83
158 159 2.765699 AGTTTTGCAACACCATCCTTGT 59.234 40.909 12.02 0.00 35.05 3.16
159 160 3.383761 GAGTTTTGCAACACCATCCTTG 58.616 45.455 12.02 0.00 35.05 3.61
160 161 2.034558 CGAGTTTTGCAACACCATCCTT 59.965 45.455 12.02 0.00 35.05 3.36
161 162 1.608590 CGAGTTTTGCAACACCATCCT 59.391 47.619 12.02 0.00 35.05 3.24
162 163 1.336755 ACGAGTTTTGCAACACCATCC 59.663 47.619 12.02 0.00 35.05 3.51
163 164 2.774439 ACGAGTTTTGCAACACCATC 57.226 45.000 12.02 3.80 35.05 3.51
164 165 3.518634 AAACGAGTTTTGCAACACCAT 57.481 38.095 12.02 0.00 35.05 3.55
165 166 3.305398 AAAACGAGTTTTGCAACACCA 57.695 38.095 12.02 0.00 40.84 4.17
174 175 1.026584 CCCGACCCAAAACGAGTTTT 58.973 50.000 8.02 8.02 42.91 2.43
175 176 0.820482 CCCCGACCCAAAACGAGTTT 60.820 55.000 0.00 0.00 0.00 2.66
176 177 1.228033 CCCCGACCCAAAACGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
177 178 1.986632 AACCCCGACCCAAAACGAGT 61.987 55.000 0.00 0.00 0.00 4.18
178 179 1.228033 AACCCCGACCCAAAACGAG 60.228 57.895 0.00 0.00 0.00 4.18
179 180 1.526455 CAACCCCGACCCAAAACGA 60.526 57.895 0.00 0.00 0.00 3.85
180 181 1.385756 AACAACCCCGACCCAAAACG 61.386 55.000 0.00 0.00 0.00 3.60
181 182 0.103390 CAACAACCCCGACCCAAAAC 59.897 55.000 0.00 0.00 0.00 2.43
182 183 1.677637 GCAACAACCCCGACCCAAAA 61.678 55.000 0.00 0.00 0.00 2.44
183 184 2.128507 GCAACAACCCCGACCCAAA 61.129 57.895 0.00 0.00 0.00 3.28
184 185 2.519780 GCAACAACCCCGACCCAA 60.520 61.111 0.00 0.00 0.00 4.12
185 186 4.939368 CGCAACAACCCCGACCCA 62.939 66.667 0.00 0.00 0.00 4.51
188 189 4.941309 ACCCGCAACAACCCCGAC 62.941 66.667 0.00 0.00 0.00 4.79
189 190 4.629523 GACCCGCAACAACCCCGA 62.630 66.667 0.00 0.00 0.00 5.14
191 192 4.941309 ACGACCCGCAACAACCCC 62.941 66.667 0.00 0.00 0.00 4.95
192 193 3.351416 GACGACCCGCAACAACCC 61.351 66.667 0.00 0.00 0.00 4.11
193 194 3.708734 CGACGACCCGCAACAACC 61.709 66.667 0.00 0.00 0.00 3.77
194 195 3.708734 CCGACGACCCGCAACAAC 61.709 66.667 0.00 0.00 0.00 3.32
195 196 3.229156 ATCCGACGACCCGCAACAA 62.229 57.895 0.00 0.00 0.00 2.83
196 197 3.636313 GATCCGACGACCCGCAACA 62.636 63.158 0.00 0.00 0.00 3.33
197 198 2.884207 GATCCGACGACCCGCAAC 60.884 66.667 0.00 0.00 0.00 4.17
198 199 3.350909 CTGATCCGACGACCCGCAA 62.351 63.158 0.00 0.00 0.00 4.85
199 200 3.822192 CTGATCCGACGACCCGCA 61.822 66.667 0.00 0.00 0.00 5.69
200 201 2.351336 AATCTGATCCGACGACCCGC 62.351 60.000 0.00 0.00 0.00 6.13
201 202 0.317938 GAATCTGATCCGACGACCCG 60.318 60.000 0.00 0.00 0.00 5.28
202 203 1.033574 AGAATCTGATCCGACGACCC 58.966 55.000 0.00 0.00 0.00 4.46
203 204 1.676529 TCAGAATCTGATCCGACGACC 59.323 52.381 9.18 0.00 35.39 4.79
204 205 3.634568 ATCAGAATCTGATCCGACGAC 57.365 47.619 19.24 0.00 46.83 4.34
210 211 7.967198 GGGACCCCAAATCAGAATCTGATCC 62.967 52.000 24.21 19.12 41.87 3.36
211 212 4.990120 GGGACCCCAAATCAGAATCTGATC 60.990 50.000 24.21 11.87 41.87 2.92
212 213 3.117360 GGGACCCCAAATCAGAATCTGAT 60.117 47.826 19.24 19.24 43.19 2.90
213 214 2.242196 GGGACCCCAAATCAGAATCTGA 59.758 50.000 15.97 15.97 39.34 3.27
214 215 2.659428 GGGACCCCAAATCAGAATCTG 58.341 52.381 3.38 3.38 35.81 2.90
215 216 1.212935 CGGGACCCCAAATCAGAATCT 59.787 52.381 4.46 0.00 35.37 2.40
216 217 1.211949 TCGGGACCCCAAATCAGAATC 59.788 52.381 4.46 0.00 35.37 2.52
217 218 1.212935 CTCGGGACCCCAAATCAGAAT 59.787 52.381 4.46 0.00 35.37 2.40
218 219 0.618458 CTCGGGACCCCAAATCAGAA 59.382 55.000 4.46 0.00 35.37 3.02
219 220 1.271840 CCTCGGGACCCCAAATCAGA 61.272 60.000 4.46 0.00 35.37 3.27
220 221 1.224592 CCTCGGGACCCCAAATCAG 59.775 63.158 4.46 0.00 35.37 2.90
221 222 2.978946 GCCTCGGGACCCCAAATCA 61.979 63.158 4.46 0.00 35.37 2.57
222 223 2.124278 GCCTCGGGACCCCAAATC 60.124 66.667 4.46 0.00 35.37 2.17
223 224 4.109675 CGCCTCGGGACCCCAAAT 62.110 66.667 4.46 0.00 35.37 2.32
241 242 3.774702 GACTTTGCGCGGGTCGAC 61.775 66.667 8.83 7.13 41.67 4.20
242 243 3.583276 ATGACTTTGCGCGGGTCGA 62.583 57.895 8.83 10.35 41.67 4.20
243 244 3.083600 GATGACTTTGCGCGGGTCG 62.084 63.158 8.83 2.48 42.12 4.79
244 245 1.573829 TTGATGACTTTGCGCGGGTC 61.574 55.000 8.83 16.56 0.00 4.46
245 246 0.960364 ATTGATGACTTTGCGCGGGT 60.960 50.000 8.83 0.32 0.00 5.28
246 247 0.248215 GATTGATGACTTTGCGCGGG 60.248 55.000 8.83 0.00 0.00 6.13
247 248 0.447406 TGATTGATGACTTTGCGCGG 59.553 50.000 8.83 0.00 0.00 6.46
248 249 1.530441 CCTGATTGATGACTTTGCGCG 60.530 52.381 0.00 0.00 0.00 6.86
249 250 1.796617 GCCTGATTGATGACTTTGCGC 60.797 52.381 0.00 0.00 0.00 6.09
250 251 1.530441 CGCCTGATTGATGACTTTGCG 60.530 52.381 0.00 0.00 0.00 4.85
251 252 1.739466 TCGCCTGATTGATGACTTTGC 59.261 47.619 0.00 0.00 0.00 3.68
252 253 4.627611 AATCGCCTGATTGATGACTTTG 57.372 40.909 0.00 0.00 43.17 2.77
269 270 4.717927 ACGTTGCGCGCACAATCG 62.718 61.111 36.72 32.56 46.11 3.34
270 271 2.832818 ATGACGTTGCGCGCACAATC 62.833 55.000 36.72 28.69 46.11 2.67
271 272 2.832818 GATGACGTTGCGCGCACAAT 62.833 55.000 36.72 22.01 46.11 2.71
272 273 3.571959 GATGACGTTGCGCGCACAA 62.572 57.895 36.72 19.04 46.11 3.33
273 274 4.070818 GATGACGTTGCGCGCACA 62.071 61.111 36.72 28.34 46.11 4.57
274 275 2.832818 ATTGATGACGTTGCGCGCAC 62.833 55.000 36.72 26.27 46.11 5.34
275 276 2.561628 GATTGATGACGTTGCGCGCA 62.562 55.000 33.09 33.09 46.11 6.09
276 277 1.929714 GATTGATGACGTTGCGCGC 60.930 57.895 27.26 27.26 46.11 6.86
278 279 1.135972 AGTTGATTGATGACGTTGCGC 60.136 47.619 0.00 0.00 0.00 6.09
279 280 2.157474 TCAGTTGATTGATGACGTTGCG 59.843 45.455 0.00 0.00 0.00 4.85
280 281 3.740590 CTCAGTTGATTGATGACGTTGC 58.259 45.455 0.00 0.00 0.00 4.17
281 282 3.722957 CGCTCAGTTGATTGATGACGTTG 60.723 47.826 0.00 0.00 0.00 4.10
282 283 2.413112 CGCTCAGTTGATTGATGACGTT 59.587 45.455 0.00 0.00 0.00 3.99
283 284 1.995484 CGCTCAGTTGATTGATGACGT 59.005 47.619 0.00 0.00 0.00 4.34
284 285 1.325640 CCGCTCAGTTGATTGATGACG 59.674 52.381 0.00 0.00 0.00 4.35
285 286 2.349886 GACCGCTCAGTTGATTGATGAC 59.650 50.000 0.00 0.00 0.00 3.06
286 287 2.234661 AGACCGCTCAGTTGATTGATGA 59.765 45.455 0.00 0.00 0.00 2.92
287 288 2.625737 AGACCGCTCAGTTGATTGATG 58.374 47.619 0.00 0.00 0.00 3.07
288 289 3.055530 AGAAGACCGCTCAGTTGATTGAT 60.056 43.478 0.00 0.00 0.00 2.57
289 290 2.300152 AGAAGACCGCTCAGTTGATTGA 59.700 45.455 0.00 0.00 0.00 2.57
290 291 2.693069 AGAAGACCGCTCAGTTGATTG 58.307 47.619 0.00 0.00 0.00 2.67
291 292 3.007398 AGAAGAAGACCGCTCAGTTGATT 59.993 43.478 0.00 0.00 0.00 2.57
292 293 2.564947 AGAAGAAGACCGCTCAGTTGAT 59.435 45.455 0.00 0.00 0.00 2.57
293 294 1.964223 AGAAGAAGACCGCTCAGTTGA 59.036 47.619 0.00 0.00 0.00 3.18
294 295 2.029470 AGAGAAGAAGACCGCTCAGTTG 60.029 50.000 0.00 0.00 0.00 3.16
295 296 2.230266 GAGAGAAGAAGACCGCTCAGTT 59.770 50.000 0.00 0.00 0.00 3.16
296 297 1.816224 GAGAGAAGAAGACCGCTCAGT 59.184 52.381 0.00 0.00 0.00 3.41
297 298 1.815613 TGAGAGAAGAAGACCGCTCAG 59.184 52.381 0.00 0.00 0.00 3.35
298 299 1.542030 GTGAGAGAAGAAGACCGCTCA 59.458 52.381 0.00 0.00 0.00 4.26
299 300 1.135228 GGTGAGAGAAGAAGACCGCTC 60.135 57.143 0.00 0.00 0.00 5.03
300 301 0.892063 GGTGAGAGAAGAAGACCGCT 59.108 55.000 0.00 0.00 0.00 5.52
301 302 0.892063 AGGTGAGAGAAGAAGACCGC 59.108 55.000 0.00 0.00 0.00 5.68
302 303 2.163509 TGAGGTGAGAGAAGAAGACCG 58.836 52.381 0.00 0.00 0.00 4.79
303 304 4.817318 ATTGAGGTGAGAGAAGAAGACC 57.183 45.455 0.00 0.00 0.00 3.85
304 305 8.785329 AATTTATTGAGGTGAGAGAAGAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
311 312 8.871125 GGGAGTATAATTTATTGAGGTGAGAGA 58.129 37.037 0.00 0.00 0.00 3.10
312 313 8.875168 AGGGAGTATAATTTATTGAGGTGAGAG 58.125 37.037 0.00 0.00 0.00 3.20
313 314 8.798975 AGGGAGTATAATTTATTGAGGTGAGA 57.201 34.615 0.00 0.00 0.00 3.27
314 315 8.097662 GGAGGGAGTATAATTTATTGAGGTGAG 58.902 40.741 0.00 0.00 0.00 3.51
315 316 7.256190 CGGAGGGAGTATAATTTATTGAGGTGA 60.256 40.741 0.00 0.00 0.00 4.02
316 317 6.874134 CGGAGGGAGTATAATTTATTGAGGTG 59.126 42.308 0.00 0.00 0.00 4.00
317 318 6.557633 ACGGAGGGAGTATAATTTATTGAGGT 59.442 38.462 0.00 0.00 0.00 3.85
318 319 7.005709 ACGGAGGGAGTATAATTTATTGAGG 57.994 40.000 0.00 0.00 0.00 3.86
319 320 7.603024 GGAACGGAGGGAGTATAATTTATTGAG 59.397 40.741 0.00 0.00 0.00 3.02
320 321 7.291651 AGGAACGGAGGGAGTATAATTTATTGA 59.708 37.037 0.00 0.00 0.00 2.57
321 322 7.450903 AGGAACGGAGGGAGTATAATTTATTG 58.549 38.462 0.00 0.00 0.00 1.90
322 323 7.628501 AGGAACGGAGGGAGTATAATTTATT 57.371 36.000 0.00 0.00 0.00 1.40
323 324 8.731591 TTAGGAACGGAGGGAGTATAATTTAT 57.268 34.615 0.00 0.00 0.00 1.40
324 325 8.551682 TTTAGGAACGGAGGGAGTATAATTTA 57.448 34.615 0.00 0.00 0.00 1.40
325 326 7.441903 TTTAGGAACGGAGGGAGTATAATTT 57.558 36.000 0.00 0.00 0.00 1.82
326 327 7.628501 ATTTAGGAACGGAGGGAGTATAATT 57.371 36.000 0.00 0.00 0.00 1.40
327 328 7.954620 AGTATTTAGGAACGGAGGGAGTATAAT 59.045 37.037 0.00 0.00 0.00 1.28
328 329 7.300658 AGTATTTAGGAACGGAGGGAGTATAA 58.699 38.462 0.00 0.00 0.00 0.98
329 330 6.856757 AGTATTTAGGAACGGAGGGAGTATA 58.143 40.000 0.00 0.00 0.00 1.47
330 331 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
331 332 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
332 333 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
333 334 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
334 335 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
335 336 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
336 337 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
337 338 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
338 339 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
339 340 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
340 341 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
341 342 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
342 343 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
343 344 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
344 345 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
346 347 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
347 348 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
348 349 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
349 350 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
350 351 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
351 352 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
352 353 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
353 354 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
354 355 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
355 356 6.319141 ACTTGTTGAAATGCCTAGAAAGAC 57.681 37.500 0.00 0.00 0.00 3.01
356 357 7.719633 AGTTACTTGTTGAAATGCCTAGAAAGA 59.280 33.333 0.00 0.00 0.00 2.52
357 358 7.875971 AGTTACTTGTTGAAATGCCTAGAAAG 58.124 34.615 0.00 0.00 0.00 2.62
358 359 7.817418 AGTTACTTGTTGAAATGCCTAGAAA 57.183 32.000 0.00 0.00 0.00 2.52
359 360 7.934665 TGTAGTTACTTGTTGAAATGCCTAGAA 59.065 33.333 0.00 0.00 0.00 2.10
360 361 7.446769 TGTAGTTACTTGTTGAAATGCCTAGA 58.553 34.615 0.00 0.00 0.00 2.43
361 362 7.667043 TGTAGTTACTTGTTGAAATGCCTAG 57.333 36.000 0.00 0.00 0.00 3.02
362 363 9.158233 GTATGTAGTTACTTGTTGAAATGCCTA 57.842 33.333 0.00 0.00 0.00 3.93
363 364 7.148474 CGTATGTAGTTACTTGTTGAAATGCCT 60.148 37.037 0.00 0.00 0.00 4.75
364 365 6.959311 CGTATGTAGTTACTTGTTGAAATGCC 59.041 38.462 0.00 0.00 0.00 4.40
365 366 7.735500 TCGTATGTAGTTACTTGTTGAAATGC 58.264 34.615 0.00 0.00 0.00 3.56
366 367 9.741168 CTTCGTATGTAGTTACTTGTTGAAATG 57.259 33.333 0.00 0.00 0.00 2.32
367 368 8.440833 GCTTCGTATGTAGTTACTTGTTGAAAT 58.559 33.333 0.00 0.00 0.00 2.17
368 369 7.438757 TGCTTCGTATGTAGTTACTTGTTGAAA 59.561 33.333 0.00 0.00 0.00 2.69
369 370 6.924612 TGCTTCGTATGTAGTTACTTGTTGAA 59.075 34.615 0.00 0.00 0.00 2.69
370 371 6.448852 TGCTTCGTATGTAGTTACTTGTTGA 58.551 36.000 0.00 0.00 0.00 3.18
371 372 6.699895 TGCTTCGTATGTAGTTACTTGTTG 57.300 37.500 0.00 0.00 0.00 3.33
372 373 7.718272 TTTGCTTCGTATGTAGTTACTTGTT 57.282 32.000 0.00 0.00 0.00 2.83
373 374 7.718272 TTTTGCTTCGTATGTAGTTACTTGT 57.282 32.000 0.00 0.00 0.00 3.16
460 461 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
461 462 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
462 463 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
463 464 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
464 465 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
465 466 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
466 467 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
467 468 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
468 469 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
469 470 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
470 471 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
471 472 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
472 473 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
473 474 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
474 475 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
475 476 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
476 477 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
477 478 8.731591 ATAAAATATACTCCCTCCGTTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
478 479 8.731591 AATAAAATATACTCCCTCCGTTCCTA 57.268 34.615 0.00 0.00 0.00 2.94
479 480 7.513091 AGAATAAAATATACTCCCTCCGTTCCT 59.487 37.037 0.00 0.00 0.00 3.36
480 481 7.677892 AGAATAAAATATACTCCCTCCGTTCC 58.322 38.462 0.00 0.00 0.00 3.62
481 482 7.818446 GGAGAATAAAATATACTCCCTCCGTTC 59.182 40.741 0.00 0.00 40.58 3.95
482 483 7.513091 AGGAGAATAAAATATACTCCCTCCGTT 59.487 37.037 0.00 0.00 45.53 4.44
483 484 7.017531 AGGAGAATAAAATATACTCCCTCCGT 58.982 38.462 0.00 0.00 45.53 4.69
484 485 7.363968 GGAGGAGAATAAAATATACTCCCTCCG 60.364 44.444 0.00 0.00 45.53 4.63
485 486 7.458170 TGGAGGAGAATAAAATATACTCCCTCC 59.542 40.741 0.57 0.57 45.53 4.30
486 487 8.437274 TGGAGGAGAATAAAATATACTCCCTC 57.563 38.462 0.00 0.00 45.53 4.30
487 488 8.814448 TTGGAGGAGAATAAAATATACTCCCT 57.186 34.615 0.00 0.00 45.53 4.20
488 489 8.881262 TCTTGGAGGAGAATAAAATATACTCCC 58.119 37.037 0.00 0.00 45.53 4.30
500 501 6.294361 TCGTGAATTTCTTGGAGGAGAATA 57.706 37.500 0.00 0.00 35.70 1.75
520 521 1.922135 GCCATGCCGTGTTCATTCGT 61.922 55.000 0.00 0.00 0.00 3.85
522 523 0.457035 ATGCCATGCCGTGTTCATTC 59.543 50.000 0.00 0.00 0.00 2.67
554 555 5.427378 AGTTTCCTTTTGTTGTTTCATGGG 58.573 37.500 0.00 0.00 0.00 4.00
559 560 7.148639 GGACAAAGAGTTTCCTTTTGTTGTTTC 60.149 37.037 3.68 0.00 34.41 2.78
560 561 6.649141 GGACAAAGAGTTTCCTTTTGTTGTTT 59.351 34.615 3.68 0.00 34.41 2.83
561 562 6.163476 GGACAAAGAGTTTCCTTTTGTTGTT 58.837 36.000 3.68 0.00 34.41 2.83
562 563 5.245075 TGGACAAAGAGTTTCCTTTTGTTGT 59.755 36.000 3.68 0.00 34.41 3.32
563 564 5.719173 TGGACAAAGAGTTTCCTTTTGTTG 58.281 37.500 3.68 0.00 34.41 3.33
564 565 5.993748 TGGACAAAGAGTTTCCTTTTGTT 57.006 34.783 3.68 0.00 34.41 2.83
565 566 5.993748 TTGGACAAAGAGTTTCCTTTTGT 57.006 34.783 1.86 1.86 34.41 2.83
566 567 6.162777 TGTTTGGACAAAGAGTTTCCTTTTG 58.837 36.000 0.00 0.00 34.41 2.44
567 568 6.353404 TGTTTGGACAAAGAGTTTCCTTTT 57.647 33.333 0.00 0.00 34.41 2.27
568 569 5.993748 TGTTTGGACAAAGAGTTTCCTTT 57.006 34.783 0.00 0.00 36.87 3.11
569 570 5.993748 TTGTTTGGACAAAGAGTTTCCTT 57.006 34.783 0.00 0.00 42.54 3.36
593 594 7.550906 TGTTCATTTCGGAATTTCCTTTTGTTT 59.449 29.630 13.45 0.00 33.30 2.83
601 602 8.290325 GTCCTATATGTTCATTTCGGAATTTCC 58.710 37.037 5.28 5.28 0.00 3.13
818 819 1.461268 TTCCAGACTGTGAGGGGCA 60.461 57.895 0.93 0.00 0.00 5.36
999 1007 2.596338 TCCCTCGATGCCGCGATA 60.596 61.111 8.23 0.00 39.85 2.92
1008 1016 3.036429 GCAAGCACCCTCCCTCGAT 62.036 63.158 0.00 0.00 0.00 3.59
1009 1017 3.706373 GCAAGCACCCTCCCTCGA 61.706 66.667 0.00 0.00 0.00 4.04
1080 1096 1.476085 ACAGCTCAGATCCACGAGAAG 59.524 52.381 8.24 3.04 0.00 2.85
1107 1123 1.000019 TCTACTCCTCACCACCCCG 60.000 63.158 0.00 0.00 0.00 5.73
1145 1164 4.982701 AACCTCCCGTCGGTCCGT 62.983 66.667 11.88 0.00 32.46 4.69
1146 1165 4.125695 GAACCTCCCGTCGGTCCG 62.126 72.222 11.06 4.39 32.46 4.79
1147 1166 3.767806 GGAACCTCCCGTCGGTCC 61.768 72.222 11.06 6.31 32.46 4.46
1175 1194 4.103103 GCGCTCCTTGGCCGAAAC 62.103 66.667 0.00 0.00 0.00 2.78
1177 1196 4.634703 TTGCGCTCCTTGGCCGAA 62.635 61.111 9.73 0.00 0.00 4.30
1224 1243 0.614979 TCCTCCTCCTCCTCCGTTTG 60.615 60.000 0.00 0.00 0.00 2.93
1236 1255 4.851214 AGCTCCCGCCTCCTCCTC 62.851 72.222 0.00 0.00 36.60 3.71
1237 1256 4.406763 AAGCTCCCGCCTCCTCCT 62.407 66.667 0.00 0.00 36.60 3.69
1238 1257 3.855853 GAAGCTCCCGCCTCCTCC 61.856 72.222 0.00 0.00 36.60 4.30
1239 1258 4.214327 CGAAGCTCCCGCCTCCTC 62.214 72.222 0.00 0.00 36.60 3.71
1312 1331 0.319641 AGAGGAACGCGAAGAACACC 60.320 55.000 15.93 5.00 0.00 4.16
1423 1442 4.591924 ACTATCCTACCTAATCCCAAACCG 59.408 45.833 0.00 0.00 0.00 4.44
1469 1494 0.460987 CACCCTCTGCCACGAGATTC 60.461 60.000 0.00 0.00 32.74 2.52
1480 1515 0.921896 AATGATCCCACCACCCTCTG 59.078 55.000 0.00 0.00 0.00 3.35
1481 1516 1.566231 GAAATGATCCCACCACCCTCT 59.434 52.381 0.00 0.00 0.00 3.69
1482 1517 1.284785 TGAAATGATCCCACCACCCTC 59.715 52.381 0.00 0.00 0.00 4.30
1483 1518 1.381867 TGAAATGATCCCACCACCCT 58.618 50.000 0.00 0.00 0.00 4.34
1484 1519 2.230130 TTGAAATGATCCCACCACCC 57.770 50.000 0.00 0.00 0.00 4.61
1485 1520 3.768757 TCATTTGAAATGATCCCACCACC 59.231 43.478 16.04 0.00 0.00 4.61
1486 1521 5.603170 ATCATTTGAAATGATCCCACCAC 57.397 39.130 23.69 0.00 33.86 4.16
1487 1522 6.623979 AAATCATTTGAAATGATCCCACCA 57.376 33.333 27.79 4.29 37.75 4.17
1502 1537 8.034215 TGTGTGTTCTTTCTGTCAAAATCATTT 58.966 29.630 0.00 0.00 0.00 2.32
1596 1634 1.531578 GCGAGAAACAGTCCAACTTCC 59.468 52.381 0.00 0.00 0.00 3.46
1608 1646 2.861006 GGCAACCTCGCGAGAAAC 59.139 61.111 36.59 21.26 41.32 2.78
1684 1722 2.992543 GCTGCTATAATCGAGGCAAGAG 59.007 50.000 0.00 0.00 34.21 2.85
1756 1798 4.043310 TCTGGGATCAATCAGTCAAAAGGT 59.957 41.667 0.00 0.00 33.13 3.50
1787 1831 1.132640 GACGACGTGAGGCATTTGC 59.867 57.895 4.58 0.00 41.50 3.68
1996 2073 3.081804 GGATTTGGACAGACGGTGAAAT 58.918 45.455 0.00 0.00 0.00 2.17
2002 2079 2.106683 GCCGGATTTGGACAGACGG 61.107 63.158 5.05 0.00 43.81 4.79
2204 2281 1.078143 GACAGGGACACAGCCATCC 60.078 63.158 0.00 0.00 0.00 3.51
2436 2513 1.416401 ACACACCGGAATGTCTCTTGT 59.584 47.619 9.46 0.00 0.00 3.16
2439 2516 1.000955 GTCACACACCGGAATGTCTCT 59.999 52.381 9.46 0.00 0.00 3.10
2617 2694 0.809636 TGTCTTGTATGCCGATGCCG 60.810 55.000 0.00 0.00 36.33 5.69
2634 2711 2.437359 GCCTTCTGCTGCCGATGT 60.437 61.111 0.00 0.00 36.87 3.06
3194 3271 0.251297 CACTCCCTGGCCAACATTCA 60.251 55.000 7.01 0.00 0.00 2.57
3357 3434 1.991230 CCAATCCTCCGGTTCCACT 59.009 57.895 0.00 0.00 0.00 4.00
3378 3455 1.992170 ATACTTCACAGAACCGACGC 58.008 50.000 0.00 0.00 0.00 5.19
3379 3456 4.733887 GTCATATACTTCACAGAACCGACG 59.266 45.833 0.00 0.00 0.00 5.12
3483 3560 3.554524 CGTGTGTTGTGTGGATCAAATC 58.445 45.455 0.00 0.00 0.00 2.17
3589 3677 4.649218 AGGACAGCAAACCTAACAACAAAT 59.351 37.500 0.00 0.00 34.47 2.32
3590 3678 4.020543 AGGACAGCAAACCTAACAACAAA 58.979 39.130 0.00 0.00 34.47 2.83
3636 3724 9.299963 CTCTTAGACAGTATGATCAGTGAAAAG 57.700 37.037 0.09 5.95 39.69 2.27
3637 3725 9.025041 TCTCTTAGACAGTATGATCAGTGAAAA 57.975 33.333 0.09 0.00 39.69 2.29
3638 3726 8.581253 TCTCTTAGACAGTATGATCAGTGAAA 57.419 34.615 0.09 0.00 39.69 2.69
3639 3727 8.049721 TCTCTCTTAGACAGTATGATCAGTGAA 58.950 37.037 0.09 0.00 39.69 3.18
3700 3788 5.125356 TGCATTCTCTCTTTCAACAGTGAA 58.875 37.500 0.00 0.00 42.12 3.18
3728 3816 6.544928 AAAAACTCAGGGAAACAAAGTCAT 57.455 33.333 0.00 0.00 0.00 3.06
3771 3868 5.677178 GCACTATAATTTTAGTTGCTCGCAC 59.323 40.000 5.90 0.00 29.93 5.34
3836 3933 1.608055 TGCCGGCATCATTCCATAAG 58.392 50.000 29.03 0.00 0.00 1.73
3844 3941 0.396139 ACCATCTTTGCCGGCATCAT 60.396 50.000 33.25 19.29 0.00 2.45
3846 3943 1.434696 CACCATCTTTGCCGGCATC 59.565 57.895 33.25 0.00 0.00 3.91
3850 3955 2.568090 GTGCACCATCTTTGCCGG 59.432 61.111 5.22 0.00 39.39 6.13
3851 3956 1.526575 AAGGTGCACCATCTTTGCCG 61.527 55.000 36.39 0.00 39.39 5.69
3853 3958 0.668401 GCAAGGTGCACCATCTTTGC 60.668 55.000 32.25 32.25 44.26 3.68
3864 3969 4.635765 TCAGTATTACATCAAGCAAGGTGC 59.364 41.667 0.00 0.00 45.46 5.01
3883 3988 9.454859 CCCAGAAAAGTCTAATATTCTTTCAGT 57.545 33.333 0.00 0.00 32.09 3.41
3907 4012 1.681264 CGGCATAGGTCATTTTTCCCC 59.319 52.381 0.00 0.00 0.00 4.81
3953 4058 3.822735 AGCATATGGTTGCCATCATGTAC 59.177 43.478 0.40 0.00 40.74 2.90
3954 4059 4.103013 AGCATATGGTTGCCATCATGTA 57.897 40.909 0.40 0.00 40.74 2.29
3955 4060 2.953453 AGCATATGGTTGCCATCATGT 58.047 42.857 0.40 0.00 40.74 3.21
4026 4132 5.435291 CAAGAGGAGAATAGCTGGTTTGAT 58.565 41.667 0.00 0.00 0.00 2.57
4041 4147 6.596888 TGATTTCTCTATTTGTGCAAGAGGAG 59.403 38.462 11.50 4.87 37.84 3.69
4042 4148 6.475504 TGATTTCTCTATTTGTGCAAGAGGA 58.524 36.000 11.50 1.24 37.84 3.71
4043 4149 6.748333 TGATTTCTCTATTTGTGCAAGAGG 57.252 37.500 11.50 0.00 37.84 3.69
4078 4184 2.877168 GTGATCTTGATGTGGATCCAGC 59.123 50.000 16.81 10.93 37.96 4.85
4163 4269 6.540914 CAGTGAAGTAACCAAACCTCAGTAAA 59.459 38.462 0.00 0.00 0.00 2.01
4166 4272 4.163458 TCAGTGAAGTAACCAAACCTCAGT 59.837 41.667 0.00 0.00 0.00 3.41
4167 4273 4.703897 TCAGTGAAGTAACCAAACCTCAG 58.296 43.478 0.00 0.00 0.00 3.35
4168 4274 4.444306 CCTCAGTGAAGTAACCAAACCTCA 60.444 45.833 0.00 0.00 0.00 3.86
4169 4275 4.065789 CCTCAGTGAAGTAACCAAACCTC 58.934 47.826 0.00 0.00 0.00 3.85
4170 4276 3.458487 ACCTCAGTGAAGTAACCAAACCT 59.542 43.478 0.00 0.00 0.00 3.50
4171 4277 3.816994 ACCTCAGTGAAGTAACCAAACC 58.183 45.455 0.00 0.00 0.00 3.27
4172 4278 5.355910 TGAAACCTCAGTGAAGTAACCAAAC 59.644 40.000 0.00 0.00 0.00 2.93
4173 4279 5.502079 TGAAACCTCAGTGAAGTAACCAAA 58.498 37.500 0.00 0.00 0.00 3.28
4174 4280 5.105567 TGAAACCTCAGTGAAGTAACCAA 57.894 39.130 0.00 0.00 0.00 3.67
4175 4281 4.703897 CTGAAACCTCAGTGAAGTAACCA 58.296 43.478 0.00 0.00 43.64 3.67
4353 4459 1.070134 CAACTGGAACCGTTGGAGAGA 59.930 52.381 15.28 0.00 38.40 3.10
4405 4513 3.297134 ACCTGTCCTGTGAACAAACAT 57.703 42.857 0.37 0.00 0.00 2.71
4406 4514 2.799126 ACCTGTCCTGTGAACAAACA 57.201 45.000 0.16 0.16 0.00 2.83
4453 4569 6.478512 AAAAAGGTTTTGGTCTGCTTCATA 57.521 33.333 0.00 0.00 0.00 2.15
4480 4596 0.853530 GGGGGTGGAGATTAGGCAAT 59.146 55.000 0.00 0.00 0.00 3.56
4575 4692 2.894257 AATCCACACTCGCCAGCCA 61.894 57.895 0.00 0.00 0.00 4.75
4596 4713 0.251742 CATCCCCAGAAGGCACCAAA 60.252 55.000 0.00 0.00 0.00 3.28
4622 4739 4.624364 CAGCACCACCAGACGGCA 62.624 66.667 0.00 0.00 34.57 5.69
4623 4740 4.314440 TCAGCACCACCAGACGGC 62.314 66.667 0.00 0.00 34.57 5.68
4624 4741 2.047844 CTCAGCACCACCAGACGG 60.048 66.667 0.00 0.00 38.77 4.79
4625 4742 1.892819 ATCCTCAGCACCACCAGACG 61.893 60.000 0.00 0.00 0.00 4.18
4626 4743 0.392193 CATCCTCAGCACCACCAGAC 60.392 60.000 0.00 0.00 0.00 3.51
4667 4784 2.332654 ACCAAGACGCCAAATCGCC 61.333 57.895 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.