Multiple sequence alignment - TraesCS7B01G213000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G213000 chr7B 100.000 6012 0 0 1 6012 388958051 388952040 0.000000e+00 11103.0
1 TraesCS7B01G213000 chr7B 87.597 387 48 0 3442 3828 388597632 388597246 3.300000e-122 449.0
2 TraesCS7B01G213000 chr7B 83.960 399 62 2 3832 4229 388597145 388596748 1.220000e-101 381.0
3 TraesCS7B01G213000 chr7B 92.353 170 13 0 2044 2213 595441890 595442059 6.020000e-60 243.0
4 TraesCS7B01G213000 chr7B 90.580 138 13 0 3199 3336 63170249 63170386 3.700000e-42 183.0
5 TraesCS7B01G213000 chr7B 86.957 161 21 0 3174 3334 388597986 388597826 1.330000e-41 182.0
6 TraesCS7B01G213000 chr7B 73.987 469 87 25 4368 4821 388596634 388596186 2.240000e-34 158.0
7 TraesCS7B01G213000 chr7D 95.849 1590 32 21 2656 4244 392747260 392745704 0.000000e+00 2540.0
8 TraesCS7B01G213000 chr7D 83.097 2041 132 95 54 2006 392749919 392748004 0.000000e+00 1661.0
9 TraesCS7B01G213000 chr7D 91.696 1132 53 16 4264 5383 392745720 392744618 0.000000e+00 1531.0
10 TraesCS7B01G213000 chr7D 80.994 805 127 20 3442 4227 104749104 104748307 3.080000e-172 616.0
11 TraesCS7B01G213000 chr7D 86.822 387 51 0 3442 3828 392264615 392264229 3.330000e-117 433.0
12 TraesCS7B01G213000 chr7D 87.324 355 41 3 5636 5990 392742753 392742403 2.610000e-108 403.0
13 TraesCS7B01G213000 chr7D 82.957 399 66 2 3832 4229 392264103 392263706 5.730000e-95 359.0
14 TraesCS7B01G213000 chr7D 83.246 382 34 14 2284 2639 392747707 392747330 2.090000e-84 324.0
15 TraesCS7B01G213000 chr7D 86.420 162 20 2 3174 3334 392264965 392264805 6.190000e-40 176.0
16 TraesCS7B01G213000 chr7D 73.987 469 91 23 4368 4821 392263618 392263166 1.730000e-35 161.0
17 TraesCS7B01G213000 chr7A 93.145 1590 65 17 2656 4240 444794075 444792525 0.000000e+00 2292.0
18 TraesCS7B01G213000 chr7A 89.717 1167 77 29 4266 5398 444792537 444791380 0.000000e+00 1450.0
19 TraesCS7B01G213000 chr7A 82.389 988 63 48 614 1562 444796401 444795486 0.000000e+00 758.0
20 TraesCS7B01G213000 chr7A 84.540 511 72 5 5502 6011 444789284 444788780 3.240000e-137 499.0
21 TraesCS7B01G213000 chr7A 86.305 387 53 0 3442 3828 443964852 443964466 7.200000e-114 422.0
22 TraesCS7B01G213000 chr7A 82.663 398 67 2 3832 4228 443964337 443963941 9.590000e-93 351.0
23 TraesCS7B01G213000 chr7A 83.051 354 30 7 2284 2608 444794679 444794327 1.640000e-75 294.0
24 TraesCS7B01G213000 chr7A 92.135 178 11 3 2044 2219 490865560 490865736 1.290000e-61 248.0
25 TraesCS7B01G213000 chr7A 87.654 162 18 2 3174 3334 443965204 443965044 2.860000e-43 187.0
26 TraesCS7B01G213000 chr7A 95.455 110 5 0 493 602 444796662 444796553 6.190000e-40 176.0
27 TraesCS7B01G213000 chr7A 74.364 472 82 30 4368 4821 443963669 443963219 1.340000e-36 165.0
28 TraesCS7B01G213000 chr7A 98.000 50 1 0 18 67 444797095 444797046 2.980000e-13 87.9
29 TraesCS7B01G213000 chr1A 79.925 797 143 13 3444 4227 39636913 39636121 2.430000e-158 569.0
30 TraesCS7B01G213000 chr1A 92.308 169 13 0 2044 2212 234233139 234232971 2.170000e-59 241.0
31 TraesCS7B01G213000 chr1B 79.224 799 148 10 3444 4227 59634599 59635394 1.910000e-149 540.0
32 TraesCS7B01G213000 chr1B 95.238 63 3 0 4814 4876 22303887 22303825 3.830000e-17 100.0
33 TraesCS7B01G213000 chr2D 85.037 401 58 2 3832 4231 648636158 648635759 2.020000e-109 407.0
34 TraesCS7B01G213000 chr2D 83.854 384 62 0 3443 3826 648636735 648636352 3.420000e-97 366.0
35 TraesCS7B01G213000 chr2D 86.503 163 22 0 3173 3335 648637001 648636839 4.790000e-41 180.0
36 TraesCS7B01G213000 chr2A 84.925 398 58 2 3832 4228 775748274 775748670 9.390000e-108 401.0
37 TraesCS7B01G213000 chr2A 85.379 383 56 0 3443 3825 775747585 775747967 1.210000e-106 398.0
38 TraesCS7B01G213000 chr2A 90.449 178 17 0 2047 2224 719733158 719732981 1.010000e-57 235.0
39 TraesCS7B01G213000 chr2A 86.503 163 22 0 3173 3335 775747319 775747481 4.790000e-41 180.0
40 TraesCS7B01G213000 chr2B 84.539 401 60 2 3832 4231 784717922 784717523 4.370000e-106 396.0
41 TraesCS7B01G213000 chr2B 86.503 163 22 0 3173 3335 784718775 784718613 4.790000e-41 180.0
42 TraesCS7B01G213000 chr6D 93.976 166 10 0 2047 2212 243032889 243033054 1.000000e-62 252.0
43 TraesCS7B01G213000 chr5B 93.452 168 10 1 2047 2213 571723415 571723248 1.290000e-61 248.0
44 TraesCS7B01G213000 chr4B 89.394 198 20 1 2048 2245 389466943 389466747 1.290000e-61 248.0
45 TraesCS7B01G213000 chr4B 92.353 170 13 0 2045 2214 570345794 570345963 6.020000e-60 243.0
46 TraesCS7B01G213000 chr5A 92.899 169 12 0 2048 2216 458198878 458199046 4.650000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G213000 chr7B 388952040 388958051 6011 True 11103.000000 11103 100.000000 1 6012 1 chr7B.!!$R1 6011
1 TraesCS7B01G213000 chr7B 388596186 388597986 1800 True 292.500000 449 83.125250 3174 4821 4 chr7B.!!$R2 1647
2 TraesCS7B01G213000 chr7D 392742403 392749919 7516 True 1291.800000 2540 88.242400 54 5990 5 chr7D.!!$R3 5936
3 TraesCS7B01G213000 chr7D 104748307 104749104 797 True 616.000000 616 80.994000 3442 4227 1 chr7D.!!$R1 785
4 TraesCS7B01G213000 chr7D 392263166 392264965 1799 True 282.250000 433 82.546500 3174 4821 4 chr7D.!!$R2 1647
5 TraesCS7B01G213000 chr7A 444788780 444797095 8315 True 793.842857 2292 89.471000 18 6011 7 chr7A.!!$R2 5993
6 TraesCS7B01G213000 chr7A 443963219 443965204 1985 True 281.250000 422 82.746500 3174 4821 4 chr7A.!!$R1 1647
7 TraesCS7B01G213000 chr1A 39636121 39636913 792 True 569.000000 569 79.925000 3444 4227 1 chr1A.!!$R1 783
8 TraesCS7B01G213000 chr1B 59634599 59635394 795 False 540.000000 540 79.224000 3444 4227 1 chr1B.!!$F1 783
9 TraesCS7B01G213000 chr2D 648635759 648637001 1242 True 317.666667 407 85.131333 3173 4231 3 chr2D.!!$R1 1058
10 TraesCS7B01G213000 chr2A 775747319 775748670 1351 False 326.333333 401 85.602333 3173 4228 3 chr2A.!!$F1 1055
11 TraesCS7B01G213000 chr2B 784717523 784718775 1252 True 288.000000 396 85.521000 3173 4231 2 chr2B.!!$R1 1058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1231 0.117140 TCTCACACATCCCCCTCTGT 59.883 55.000 0.00 0.0 0.0 3.41 F
2039 2464 0.035317 TGCTCAATCAAGACGCCTGT 59.965 50.000 0.00 0.0 0.0 4.00 F
2040 2465 1.160137 GCTCAATCAAGACGCCTGTT 58.840 50.000 0.00 0.0 0.0 3.16 F
3630 4601 1.078848 GCAGCTGATCGTGGAGGTT 60.079 57.895 20.43 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2497 3117 0.578683 CCATCGTTAGCTGTGATGCG 59.421 55.000 15.35 8.14 38.50 4.73 R
3630 4601 0.032267 TGTACACGATGTTCACGCCA 59.968 50.000 0.00 0.00 0.00 5.69 R
4177 5463 1.378382 CCATCATGTTGGCGGTGGA 60.378 57.895 9.85 0.00 0.00 4.02 R
5360 6855 0.108774 GAAGGCAGTAGCATACCCCC 59.891 60.000 0.00 0.00 44.47 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 138 9.939802 AACAAATCGTTTTCTAGGAGTAGTAAT 57.060 29.630 0.00 0.00 32.35 1.89
131 180 6.648879 AAAGGAAAAGAATGAACCGAATCA 57.351 33.333 0.00 0.00 0.00 2.57
136 185 4.376340 AAGAATGAACCGAATCAATGGC 57.624 40.909 0.00 0.00 32.06 4.40
242 303 0.382873 TACATACGCGTACAGCTGGG 59.617 55.000 23.19 8.00 45.59 4.45
290 363 1.699656 GCTGCCAGTGTATGTGCTCG 61.700 60.000 0.00 0.00 0.00 5.03
352 425 5.803020 AAGAAAATGTAGACGAATCAGGC 57.197 39.130 0.00 0.00 0.00 4.85
357 444 2.972625 TGTAGACGAATCAGGCCTTTG 58.027 47.619 0.00 0.00 0.00 2.77
370 457 2.945668 AGGCCTTTGCGATATGTTTCTC 59.054 45.455 0.00 0.00 38.85 2.87
372 459 3.002759 GGCCTTTGCGATATGTTTCTCTC 59.997 47.826 0.00 0.00 38.85 3.20
416 503 3.782443 GGGGAGCCCGTCGAATGT 61.782 66.667 0.00 0.00 36.85 2.71
417 504 2.511600 GGGAGCCCGTCGAATGTG 60.512 66.667 0.00 0.00 0.00 3.21
418 505 2.577059 GGAGCCCGTCGAATGTGA 59.423 61.111 0.00 0.00 0.00 3.58
419 506 1.079405 GGAGCCCGTCGAATGTGAA 60.079 57.895 0.00 0.00 0.00 3.18
421 508 1.369625 GAGCCCGTCGAATGTGAATT 58.630 50.000 0.00 0.00 0.00 2.17
422 509 2.546778 GAGCCCGTCGAATGTGAATTA 58.453 47.619 0.00 0.00 0.00 1.40
423 510 2.277084 AGCCCGTCGAATGTGAATTAC 58.723 47.619 0.00 0.00 0.00 1.89
424 511 2.093658 AGCCCGTCGAATGTGAATTACT 60.094 45.455 0.00 0.00 0.00 2.24
425 512 2.030457 GCCCGTCGAATGTGAATTACTG 59.970 50.000 0.00 0.00 0.00 2.74
428 515 3.309682 CCGTCGAATGTGAATTACTGCAT 59.690 43.478 0.00 0.00 0.00 3.96
443 530 3.044059 GCATGAACTGCGCTGGTCC 62.044 63.158 26.79 10.21 41.97 4.46
454 541 1.448540 GCTGGTCCTGGACATCACG 60.449 63.158 26.94 11.40 33.68 4.35
455 542 1.888436 GCTGGTCCTGGACATCACGA 61.888 60.000 26.94 3.88 33.68 4.35
456 543 0.174389 CTGGTCCTGGACATCACGAG 59.826 60.000 26.94 9.38 33.68 4.18
549 644 1.742880 TGCTCTGCCGCTTCATGTC 60.743 57.895 0.00 0.00 0.00 3.06
704 939 2.025155 GTAGAAGCCAGATCTGACGGA 58.975 52.381 24.62 1.31 0.00 4.69
705 940 0.820871 AGAAGCCAGATCTGACGGAC 59.179 55.000 24.62 9.30 0.00 4.79
708 943 1.142748 GCCAGATCTGACGGACAGG 59.857 63.158 24.62 5.68 45.76 4.00
709 944 1.819229 CCAGATCTGACGGACAGGG 59.181 63.158 24.62 0.00 45.76 4.45
710 945 1.142748 CAGATCTGACGGACAGGGC 59.857 63.158 18.34 0.94 45.76 5.19
711 946 2.105128 GATCTGACGGACAGGGCG 59.895 66.667 7.58 0.00 45.76 6.13
712 947 2.680352 ATCTGACGGACAGGGCGT 60.680 61.111 7.58 0.00 45.76 5.68
713 948 2.615262 GATCTGACGGACAGGGCGTC 62.615 65.000 7.58 0.00 45.76 5.19
714 949 4.778415 CTGACGGACAGGGCGTCG 62.778 72.222 0.00 0.00 46.42 5.12
782 1051 0.393077 CTGGAGTCAACGGTCAACCT 59.607 55.000 0.00 0.00 0.00 3.50
841 1117 3.459965 CGCTCCCTGCTCTGCTCT 61.460 66.667 0.00 0.00 40.11 4.09
883 1160 1.134560 GACCAGTCCGACGCTCTTTAT 59.865 52.381 0.00 0.00 0.00 1.40
897 1174 5.009210 ACGCTCTTTATATCTCTTTCGCTCT 59.991 40.000 0.00 0.00 0.00 4.09
908 1185 3.531538 TCTTTCGCTCTCTCTCTCTCTC 58.468 50.000 0.00 0.00 0.00 3.20
911 1188 2.388735 TCGCTCTCTCTCTCTCTCTCT 58.611 52.381 0.00 0.00 0.00 3.10
946 1223 2.114616 ACATCCTCCTCTCACACATCC 58.885 52.381 0.00 0.00 0.00 3.51
954 1231 0.117140 TCTCACACATCCCCCTCTGT 59.883 55.000 0.00 0.00 0.00 3.41
955 1232 0.987294 CTCACACATCCCCCTCTGTT 59.013 55.000 0.00 0.00 0.00 3.16
956 1233 0.984230 TCACACATCCCCCTCTGTTC 59.016 55.000 0.00 0.00 0.00 3.18
957 1234 0.987294 CACACATCCCCCTCTGTTCT 59.013 55.000 0.00 0.00 0.00 3.01
958 1235 0.987294 ACACATCCCCCTCTGTTCTG 59.013 55.000 0.00 0.00 0.00 3.02
985 1262 1.471684 CTCCATTGCTCAAGACAAGGC 59.528 52.381 0.00 0.00 0.00 4.35
1058 1338 2.125512 GGTACGTGCTCCCTGCTG 60.126 66.667 3.01 0.00 43.37 4.41
1111 1398 6.926826 TCTCGCTGTTAAGAAAATTACAGTCA 59.073 34.615 0.00 0.00 40.02 3.41
1157 1447 6.093633 CCGAAAAGAAGATACCCAGTAAAAGG 59.906 42.308 0.00 0.00 0.00 3.11
1172 1462 8.272173 CCCAGTAAAAGGTTTAGATAGATGGAA 58.728 37.037 0.00 0.00 0.00 3.53
1223 1526 4.333417 AAGCATGGAGCCAGCTTC 57.667 55.556 15.67 0.00 44.67 3.86
1224 1527 1.381463 AAGCATGGAGCCAGCTTCA 59.619 52.632 15.67 2.43 44.67 3.02
1225 1528 0.680280 AAGCATGGAGCCAGCTTCAG 60.680 55.000 6.78 0.51 44.67 3.02
1226 1529 1.077930 GCATGGAGCCAGCTTCAGA 60.078 57.895 6.78 0.00 34.64 3.27
1227 1530 1.096386 GCATGGAGCCAGCTTCAGAG 61.096 60.000 6.78 3.06 34.64 3.35
1322 1625 4.105025 TCCATGGGGGAGGAATGG 57.895 61.111 13.02 0.00 42.15 3.16
1323 1626 1.404047 TCCATGGGGGAGGAATGGA 59.596 57.895 13.02 0.00 45.95 3.41
1324 1627 0.698886 TCCATGGGGGAGGAATGGAG 60.699 60.000 13.02 0.00 43.85 3.86
1344 1647 2.607139 GATCCCCTTCCGTCTCCCCT 62.607 65.000 0.00 0.00 0.00 4.79
1377 1680 1.441311 CACACCCACCAGCCAAAAC 59.559 57.895 0.00 0.00 0.00 2.43
1382 1685 1.120795 CCCACCAGCCAAAACACCAT 61.121 55.000 0.00 0.00 0.00 3.55
1461 1775 2.161808 TCTTCCGCACGTGAAAACAAAA 59.838 40.909 22.23 1.98 0.00 2.44
1465 1779 0.917939 GCACGTGAAAACAAAACCCG 59.082 50.000 22.23 0.00 0.00 5.28
1466 1780 0.917939 CACGTGAAAACAAAACCCGC 59.082 50.000 10.90 0.00 0.00 6.13
1467 1781 0.179132 ACGTGAAAACAAAACCCGCC 60.179 50.000 0.00 0.00 0.00 6.13
1468 1782 0.101579 CGTGAAAACAAAACCCGCCT 59.898 50.000 0.00 0.00 0.00 5.52
1469 1783 1.470112 CGTGAAAACAAAACCCGCCTT 60.470 47.619 0.00 0.00 0.00 4.35
1470 1784 2.198406 GTGAAAACAAAACCCGCCTTC 58.802 47.619 0.00 0.00 0.00 3.46
1471 1785 1.137282 TGAAAACAAAACCCGCCTTCC 59.863 47.619 0.00 0.00 0.00 3.46
1472 1786 1.411246 GAAAACAAAACCCGCCTTCCT 59.589 47.619 0.00 0.00 0.00 3.36
1502 1816 5.303971 CACCTTCACACTCTTGATTTCTCT 58.696 41.667 0.00 0.00 0.00 3.10
1503 1817 5.762218 CACCTTCACACTCTTGATTTCTCTT 59.238 40.000 0.00 0.00 0.00 2.85
1504 1818 5.762218 ACCTTCACACTCTTGATTTCTCTTG 59.238 40.000 0.00 0.00 0.00 3.02
1505 1819 5.334724 CCTTCACACTCTTGATTTCTCTTGC 60.335 44.000 0.00 0.00 0.00 4.01
1506 1820 4.965814 TCACACTCTTGATTTCTCTTGCT 58.034 39.130 0.00 0.00 0.00 3.91
1507 1821 6.101650 TCACACTCTTGATTTCTCTTGCTA 57.898 37.500 0.00 0.00 0.00 3.49
1508 1822 5.928839 TCACACTCTTGATTTCTCTTGCTAC 59.071 40.000 0.00 0.00 0.00 3.58
1509 1823 5.931146 CACACTCTTGATTTCTCTTGCTACT 59.069 40.000 0.00 0.00 0.00 2.57
1510 1824 7.039714 TCACACTCTTGATTTCTCTTGCTACTA 60.040 37.037 0.00 0.00 0.00 1.82
1511 1825 7.275341 CACACTCTTGATTTCTCTTGCTACTAG 59.725 40.741 0.00 0.00 0.00 2.57
1534 1848 0.690762 TACTTTTTGCCTCGGCTCCT 59.309 50.000 9.65 0.00 42.51 3.69
1569 1929 7.041235 GCTCTCTAGAAGATGCAGCAATTAAAT 60.041 37.037 4.07 0.00 32.19 1.40
1570 1930 9.486497 CTCTCTAGAAGATGCAGCAATTAAATA 57.514 33.333 4.07 0.00 32.19 1.40
1571 1931 9.836864 TCTCTAGAAGATGCAGCAATTAAATAA 57.163 29.630 4.07 0.00 0.00 1.40
1583 1950 9.931210 GCAGCAATTAAATAAAAGTATCTACGT 57.069 29.630 0.00 0.00 0.00 3.57
1599 1966 2.433868 ACGTATCATGCCCGTCATAC 57.566 50.000 0.00 0.00 33.19 2.39
1617 1984 2.314647 CGGTCCGTGTGATTTGCGT 61.315 57.895 2.08 0.00 0.00 5.24
1632 1999 1.777101 TGCGTTGCTTTGCATTAACC 58.223 45.000 0.00 0.00 38.76 2.85
1636 2003 0.387878 TTGCTTTGCATTAACCGCCG 60.388 50.000 0.00 0.00 38.76 6.46
1656 2031 1.561542 GAATTCTGCCTTCTCTCCCCA 59.438 52.381 0.00 0.00 0.00 4.96
1658 2033 1.557269 TTCTGCCTTCTCTCCCCAGC 61.557 60.000 0.00 0.00 0.00 4.85
1671 2046 3.054802 TCTCCCCAGCTCTCTGAAAATTC 60.055 47.826 0.00 0.00 42.95 2.17
1672 2047 2.025887 TCCCCAGCTCTCTGAAAATTCC 60.026 50.000 0.00 0.00 42.95 3.01
1681 2056 3.331889 TCTCTGAAAATTCCTTCTGGCCT 59.668 43.478 3.32 0.00 0.00 5.19
1682 2057 3.690460 TCTGAAAATTCCTTCTGGCCTC 58.310 45.455 3.32 0.00 0.00 4.70
1683 2058 3.331889 TCTGAAAATTCCTTCTGGCCTCT 59.668 43.478 3.32 0.00 0.00 3.69
1684 2059 3.424703 TGAAAATTCCTTCTGGCCTCTG 58.575 45.455 3.32 0.00 0.00 3.35
1686 2061 1.673767 AATTCCTTCTGGCCTCTGGA 58.326 50.000 3.32 3.62 0.00 3.86
1687 2062 0.915364 ATTCCTTCTGGCCTCTGGAC 59.085 55.000 3.32 0.00 0.00 4.02
1688 2063 0.178891 TTCCTTCTGGCCTCTGGACT 60.179 55.000 3.32 0.00 0.00 3.85
1689 2064 0.906756 TCCTTCTGGCCTCTGGACTG 60.907 60.000 3.32 0.00 0.00 3.51
1690 2065 1.078567 CTTCTGGCCTCTGGACTGC 60.079 63.158 3.32 0.00 29.18 4.40
1691 2066 2.533974 CTTCTGGCCTCTGGACTGCC 62.534 65.000 3.32 0.00 45.56 4.85
1704 2079 3.060615 CTGCCTGCCCTTGTGCTC 61.061 66.667 0.00 0.00 0.00 4.26
1739 2114 3.062774 GGCTAGAGCAAAATTCGACTCAC 59.937 47.826 3.54 0.00 44.36 3.51
1753 2128 4.376146 TCGACTCACACATCACATGAAAA 58.624 39.130 0.00 0.00 0.00 2.29
1754 2129 4.211164 TCGACTCACACATCACATGAAAAC 59.789 41.667 0.00 0.00 0.00 2.43
1759 2134 7.095910 ACTCACACATCACATGAAAACAAAAA 58.904 30.769 0.00 0.00 0.00 1.94
1760 2135 7.765360 ACTCACACATCACATGAAAACAAAAAT 59.235 29.630 0.00 0.00 0.00 1.82
1762 2137 9.761504 TCACACATCACATGAAAACAAAAATAT 57.238 25.926 0.00 0.00 0.00 1.28
1763 2138 9.800299 CACACATCACATGAAAACAAAAATATG 57.200 29.630 0.00 0.00 0.00 1.78
1767 2142 9.730146 CATCACATGAAAACAAAAATATGAACG 57.270 29.630 0.00 0.00 0.00 3.95
1788 2163 4.806247 ACGAAAAGTCTCTTGTTGTCTCTG 59.194 41.667 0.00 0.00 0.00 3.35
1791 2166 4.329462 AAGTCTCTTGTTGTCTCTGTCC 57.671 45.455 0.00 0.00 0.00 4.02
1797 2172 1.434188 TGTTGTCTCTGTCCCATGGT 58.566 50.000 11.73 0.00 0.00 3.55
1802 2177 2.606213 TCTGTCCCATGGTCCGCA 60.606 61.111 11.73 2.97 0.00 5.69
1804 2179 4.386951 TGTCCCATGGTCCGCACG 62.387 66.667 11.73 0.00 0.00 5.34
1823 2198 4.245660 CACGCCTTCTCTTGACTATGAAA 58.754 43.478 0.00 0.00 0.00 2.69
1839 2214 5.864474 ACTATGAAATATGAACGATCGCCTC 59.136 40.000 16.60 12.80 0.00 4.70
1849 2224 2.877335 ACGATCGCCTCTACTTTTCAC 58.123 47.619 16.60 0.00 0.00 3.18
1854 2229 5.652518 GATCGCCTCTACTTTTCACTACTT 58.347 41.667 0.00 0.00 0.00 2.24
1855 2230 5.464030 TCGCCTCTACTTTTCACTACTTT 57.536 39.130 0.00 0.00 0.00 2.66
1856 2231 5.227908 TCGCCTCTACTTTTCACTACTTTG 58.772 41.667 0.00 0.00 0.00 2.77
1857 2232 4.989168 CGCCTCTACTTTTCACTACTTTGT 59.011 41.667 0.00 0.00 0.00 2.83
1858 2233 5.118817 CGCCTCTACTTTTCACTACTTTGTC 59.881 44.000 0.00 0.00 0.00 3.18
1869 2244 5.479306 TCACTACTTTGTCTTGTCCTATGC 58.521 41.667 0.00 0.00 0.00 3.14
1874 2249 2.672961 TGTCTTGTCCTATGCTTCGG 57.327 50.000 0.00 0.00 0.00 4.30
1875 2250 2.176045 TGTCTTGTCCTATGCTTCGGA 58.824 47.619 0.00 0.00 0.00 4.55
1893 2288 2.791158 CGGATTAGCGTCCACAATTTGC 60.791 50.000 0.00 0.00 38.21 3.68
1909 2307 8.063630 CCACAATTTGCAGTTTACAAGAATTTC 58.936 33.333 0.00 0.00 0.00 2.17
1914 2312 6.403866 TGCAGTTTACAAGAATTTCCATGT 57.596 33.333 9.55 9.55 0.00 3.21
1942 2340 2.995283 TGCACTTGATGATCCTTGGAG 58.005 47.619 0.00 0.00 0.00 3.86
1946 2344 3.135348 CACTTGATGATCCTTGGAGCCTA 59.865 47.826 2.26 0.00 0.00 3.93
1954 2352 3.366052 TCCTTGGAGCCTAAAATGACC 57.634 47.619 0.00 0.00 0.00 4.02
1963 2361 2.101415 GCCTAAAATGACCCATCAAGGC 59.899 50.000 2.80 2.80 38.69 4.35
1967 2366 2.242408 AATGACCCATCAAGGCCCCC 62.242 60.000 0.00 0.00 38.69 5.40
1997 2396 5.764131 TGTTCATTACCACCGTGAAATTTC 58.236 37.500 11.41 11.41 34.04 2.17
1999 2398 6.015856 TGTTCATTACCACCGTGAAATTTCAT 60.016 34.615 23.05 9.28 39.73 2.57
2026 2451 7.050970 AGAGAATATTACCGTACATGCTCAA 57.949 36.000 8.90 0.00 0.00 3.02
2030 2455 7.931407 AGAATATTACCGTACATGCTCAATCAA 59.069 33.333 0.00 0.00 0.00 2.57
2033 2458 3.262420 ACCGTACATGCTCAATCAAGAC 58.738 45.455 0.00 0.00 0.00 3.01
2034 2459 2.282555 CCGTACATGCTCAATCAAGACG 59.717 50.000 0.00 0.00 0.00 4.18
2035 2460 2.285256 CGTACATGCTCAATCAAGACGC 60.285 50.000 0.00 0.00 0.00 5.19
2036 2461 1.089920 ACATGCTCAATCAAGACGCC 58.910 50.000 0.00 0.00 0.00 5.68
2037 2462 1.339438 ACATGCTCAATCAAGACGCCT 60.339 47.619 0.00 0.00 0.00 5.52
2038 2463 1.063616 CATGCTCAATCAAGACGCCTG 59.936 52.381 0.00 0.00 0.00 4.85
2039 2464 0.035317 TGCTCAATCAAGACGCCTGT 59.965 50.000 0.00 0.00 0.00 4.00
2040 2465 1.160137 GCTCAATCAAGACGCCTGTT 58.840 50.000 0.00 0.00 0.00 3.16
2041 2466 1.537202 GCTCAATCAAGACGCCTGTTT 59.463 47.619 0.00 0.00 0.00 2.83
2042 2467 2.413371 GCTCAATCAAGACGCCTGTTTC 60.413 50.000 0.00 0.00 0.00 2.78
2043 2468 2.807967 CTCAATCAAGACGCCTGTTTCA 59.192 45.455 0.00 0.00 0.00 2.69
2044 2469 3.210227 TCAATCAAGACGCCTGTTTCAA 58.790 40.909 0.00 0.00 0.00 2.69
2047 2472 2.639065 TCAAGACGCCTGTTTCAAAGT 58.361 42.857 0.00 0.00 0.00 2.66
2051 2476 3.391049 AGACGCCTGTTTCAAAGTACTC 58.609 45.455 0.00 0.00 0.00 2.59
2054 2479 2.550208 CGCCTGTTTCAAAGTACTCCCT 60.550 50.000 0.00 0.00 0.00 4.20
2056 2481 3.676093 CCTGTTTCAAAGTACTCCCTCC 58.324 50.000 0.00 0.00 0.00 4.30
2060 2485 3.672767 TTCAAAGTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
2062 2487 1.900486 CAAAGTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
2069 2494 5.774184 AGTACTCCCTCCGTTCCTAAATATC 59.226 44.000 0.00 0.00 0.00 1.63
2070 2495 3.573110 ACTCCCTCCGTTCCTAAATATCG 59.427 47.826 0.00 0.00 0.00 2.92
2072 2497 2.631545 CCCTCCGTTCCTAAATATCGGT 59.368 50.000 0.00 0.00 41.58 4.69
2074 2499 3.573110 CCTCCGTTCCTAAATATCGGTCT 59.427 47.826 0.00 0.00 41.58 3.85
2075 2500 4.038883 CCTCCGTTCCTAAATATCGGTCTT 59.961 45.833 0.00 0.00 41.58 3.01
2076 2501 5.452917 CCTCCGTTCCTAAATATCGGTCTTT 60.453 44.000 0.00 0.00 41.58 2.52
2077 2502 5.594926 TCCGTTCCTAAATATCGGTCTTTC 58.405 41.667 0.00 0.00 41.58 2.62
2078 2503 5.361857 TCCGTTCCTAAATATCGGTCTTTCT 59.638 40.000 0.00 0.00 41.58 2.52
2079 2504 6.547141 TCCGTTCCTAAATATCGGTCTTTCTA 59.453 38.462 0.00 0.00 41.58 2.10
2080 2505 6.862090 CCGTTCCTAAATATCGGTCTTTCTAG 59.138 42.308 0.00 0.00 36.99 2.43
2081 2506 7.255381 CCGTTCCTAAATATCGGTCTTTCTAGA 60.255 40.741 0.00 0.00 36.99 2.43
2082 2507 7.804129 CGTTCCTAAATATCGGTCTTTCTAGAG 59.196 40.741 0.00 0.00 0.00 2.43
2083 2508 8.848182 GTTCCTAAATATCGGTCTTTCTAGAGA 58.152 37.037 0.00 0.00 0.00 3.10
2084 2509 9.589461 TTCCTAAATATCGGTCTTTCTAGAGAT 57.411 33.333 0.00 0.00 0.00 2.75
2085 2510 9.589461 TCCTAAATATCGGTCTTTCTAGAGATT 57.411 33.333 0.00 0.00 0.00 2.40
2090 2515 9.535878 AATATCGGTCTTTCTAGAGATTTCAAC 57.464 33.333 0.00 0.00 0.00 3.18
2091 2516 6.340962 TCGGTCTTTCTAGAGATTTCAACA 57.659 37.500 0.00 0.00 0.00 3.33
2092 2517 6.755206 TCGGTCTTTCTAGAGATTTCAACAA 58.245 36.000 0.00 0.00 0.00 2.83
2093 2518 6.868864 TCGGTCTTTCTAGAGATTTCAACAAG 59.131 38.462 0.00 0.00 0.00 3.16
2094 2519 6.647067 CGGTCTTTCTAGAGATTTCAACAAGT 59.353 38.462 0.00 0.00 0.00 3.16
2095 2520 7.359598 CGGTCTTTCTAGAGATTTCAACAAGTG 60.360 40.741 0.00 0.00 0.00 3.16
2096 2521 7.657761 GGTCTTTCTAGAGATTTCAACAAGTGA 59.342 37.037 0.00 0.00 0.00 3.41
2097 2522 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2098 2523 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2099 2524 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2100 2525 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2101 2526 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2102 2527 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2104 2529 8.994429 AGAGATTTCAACAAGTGACTACATAG 57.006 34.615 0.00 0.00 35.39 2.23
2105 2530 8.037758 AGAGATTTCAACAAGTGACTACATAGG 58.962 37.037 0.00 0.00 35.39 2.57
2106 2531 7.907389 AGATTTCAACAAGTGACTACATAGGA 58.093 34.615 0.00 0.00 35.39 2.94
2107 2532 8.375506 AGATTTCAACAAGTGACTACATAGGAA 58.624 33.333 0.00 0.00 35.39 3.36
2108 2533 7.962964 TTTCAACAAGTGACTACATAGGAAG 57.037 36.000 0.00 0.00 35.39 3.46
2109 2534 5.479306 TCAACAAGTGACTACATAGGAAGC 58.521 41.667 0.00 0.00 0.00 3.86
2110 2535 5.011635 TCAACAAGTGACTACATAGGAAGCA 59.988 40.000 0.00 0.00 0.00 3.91
2111 2536 5.483685 ACAAGTGACTACATAGGAAGCAA 57.516 39.130 0.00 0.00 0.00 3.91
2112 2537 5.865085 ACAAGTGACTACATAGGAAGCAAA 58.135 37.500 0.00 0.00 0.00 3.68
2113 2538 6.296026 ACAAGTGACTACATAGGAAGCAAAA 58.704 36.000 0.00 0.00 0.00 2.44
2114 2539 6.942576 ACAAGTGACTACATAGGAAGCAAAAT 59.057 34.615 0.00 0.00 0.00 1.82
2115 2540 6.992063 AGTGACTACATAGGAAGCAAAATG 57.008 37.500 0.00 0.00 0.00 2.32
2116 2541 6.711277 AGTGACTACATAGGAAGCAAAATGA 58.289 36.000 0.00 0.00 0.00 2.57
2117 2542 6.820656 AGTGACTACATAGGAAGCAAAATGAG 59.179 38.462 0.00 0.00 0.00 2.90
2118 2543 6.595716 GTGACTACATAGGAAGCAAAATGAGT 59.404 38.462 0.00 0.00 0.00 3.41
2119 2544 6.595326 TGACTACATAGGAAGCAAAATGAGTG 59.405 38.462 0.00 0.00 0.00 3.51
2120 2545 6.711277 ACTACATAGGAAGCAAAATGAGTGA 58.289 36.000 0.00 0.00 0.00 3.41
2121 2546 7.168219 ACTACATAGGAAGCAAAATGAGTGAA 58.832 34.615 0.00 0.00 0.00 3.18
2122 2547 7.831193 ACTACATAGGAAGCAAAATGAGTGAAT 59.169 33.333 0.00 0.00 0.00 2.57
2123 2548 7.093322 ACATAGGAAGCAAAATGAGTGAATC 57.907 36.000 0.00 0.00 0.00 2.52
2124 2549 6.888632 ACATAGGAAGCAAAATGAGTGAATCT 59.111 34.615 0.00 0.00 0.00 2.40
2125 2550 8.049117 ACATAGGAAGCAAAATGAGTGAATCTA 58.951 33.333 0.00 0.00 0.00 1.98
2126 2551 6.749923 AGGAAGCAAAATGAGTGAATCTAC 57.250 37.500 0.00 0.00 0.00 2.59
2127 2552 6.240894 AGGAAGCAAAATGAGTGAATCTACA 58.759 36.000 0.00 0.00 0.00 2.74
2128 2553 6.150140 AGGAAGCAAAATGAGTGAATCTACAC 59.850 38.462 0.00 0.00 40.60 2.90
2161 2586 7.997773 ATGTCTATACACATCCGTATGTAGT 57.002 36.000 0.00 0.00 44.70 2.73
2162 2587 7.198306 TGTCTATACACATCCGTATGTAGTG 57.802 40.000 0.00 0.00 44.70 2.74
2163 2588 6.206048 TGTCTATACACATCCGTATGTAGTGG 59.794 42.308 0.00 0.00 44.70 4.00
2164 2589 6.206243 GTCTATACACATCCGTATGTAGTGGT 59.794 42.308 0.00 0.00 44.70 4.16
2165 2590 3.795623 ACACATCCGTATGTAGTGGTC 57.204 47.619 0.00 0.00 44.70 4.02
2166 2591 3.362706 ACACATCCGTATGTAGTGGTCT 58.637 45.455 0.00 0.00 44.70 3.85
2167 2592 4.529897 ACACATCCGTATGTAGTGGTCTA 58.470 43.478 0.00 0.00 44.70 2.59
2168 2593 5.138276 ACACATCCGTATGTAGTGGTCTAT 58.862 41.667 0.00 0.00 44.70 1.98
2169 2594 5.597182 ACACATCCGTATGTAGTGGTCTATT 59.403 40.000 0.00 0.00 44.70 1.73
2170 2595 6.097839 ACACATCCGTATGTAGTGGTCTATTT 59.902 38.462 0.00 0.00 44.70 1.40
2171 2596 6.420903 CACATCCGTATGTAGTGGTCTATTTG 59.579 42.308 0.00 0.00 44.70 2.32
2172 2597 6.322969 ACATCCGTATGTAGTGGTCTATTTGA 59.677 38.462 0.00 0.00 44.66 2.69
2173 2598 6.778834 TCCGTATGTAGTGGTCTATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
2174 2599 7.172868 TCCGTATGTAGTGGTCTATTTGAAA 57.827 36.000 0.00 0.00 0.00 2.69
2175 2600 7.788026 TCCGTATGTAGTGGTCTATTTGAAAT 58.212 34.615 0.00 0.00 0.00 2.17
2176 2601 7.924412 TCCGTATGTAGTGGTCTATTTGAAATC 59.076 37.037 0.00 0.00 0.00 2.17
2177 2602 7.926555 CCGTATGTAGTGGTCTATTTGAAATCT 59.073 37.037 0.00 0.00 0.00 2.40
2178 2603 8.969267 CGTATGTAGTGGTCTATTTGAAATCTC 58.031 37.037 0.00 0.00 0.00 2.75
2260 2699 9.838339 ATATTTAAGAACAGAGGGTGTATTCTG 57.162 33.333 0.27 0.27 44.93 3.02
2261 2700 4.559862 AAGAACAGAGGGTGTATTCTGG 57.440 45.455 6.47 0.00 43.96 3.86
2262 2701 2.840651 AGAACAGAGGGTGTATTCTGGG 59.159 50.000 6.47 0.00 43.96 4.45
2263 2702 2.642171 ACAGAGGGTGTATTCTGGGA 57.358 50.000 6.47 0.00 43.96 4.37
2265 2704 2.840651 ACAGAGGGTGTATTCTGGGAAG 59.159 50.000 6.47 0.00 43.96 3.46
2267 2706 3.713764 CAGAGGGTGTATTCTGGGAAGAT 59.286 47.826 0.00 0.00 37.70 2.40
2268 2707 4.901849 CAGAGGGTGTATTCTGGGAAGATA 59.098 45.833 0.00 0.00 37.70 1.98
2269 2708 5.545723 CAGAGGGTGTATTCTGGGAAGATAT 59.454 44.000 0.00 0.00 37.70 1.63
2271 2710 7.235606 CAGAGGGTGTATTCTGGGAAGATATAA 59.764 40.741 0.00 0.00 37.70 0.98
2272 2711 7.794683 AGAGGGTGTATTCTGGGAAGATATAAA 59.205 37.037 0.00 0.00 0.00 1.40
2274 2713 9.629649 AGGGTGTATTCTGGGAAGATATAAATA 57.370 33.333 0.00 0.00 0.00 1.40
2328 2940 8.865590 TTTTCAAAAAGGAAGATTAAACCTCG 57.134 30.769 0.00 0.00 33.16 4.63
2332 2944 5.500546 AAAGGAAGATTAAACCTCGGTCT 57.499 39.130 0.00 0.00 33.16 3.85
2349 2961 2.366916 GGTCTCTGTATCCTGGGATGTG 59.633 54.545 11.98 3.01 36.17 3.21
2363 2975 3.257873 TGGGATGTGTGCAACCAATTTAG 59.742 43.478 0.00 0.00 39.08 1.85
2422 3040 8.472413 TCGCTTACAAGTAGGTTCAGTATATTT 58.528 33.333 0.00 0.00 0.00 1.40
2423 3041 8.540492 CGCTTACAAGTAGGTTCAGTATATTTG 58.460 37.037 0.00 0.00 0.00 2.32
2424 3042 9.379791 GCTTACAAGTAGGTTCAGTATATTTGT 57.620 33.333 0.00 0.00 34.80 2.83
2444 3064 6.961360 TTGTACTATGCTGCTAGTATCACT 57.039 37.500 16.45 0.00 36.77 3.41
2485 3105 1.269206 CGTTGGCATTTTGACAGCTGT 60.269 47.619 21.88 21.88 36.33 4.40
2497 3117 1.669779 GACAGCTGTTGCCATGAGATC 59.330 52.381 22.65 0.00 40.80 2.75
2512 3132 1.783711 GAGATCGCATCACAGCTAACG 59.216 52.381 0.00 0.00 0.00 3.18
2514 3134 2.035193 AGATCGCATCACAGCTAACGAT 59.965 45.455 0.00 0.00 42.40 3.73
2533 3177 5.023452 ACGATGGGTATAATCCAGCAGATA 58.977 41.667 10.85 0.00 40.41 1.98
2535 3179 6.013725 ACGATGGGTATAATCCAGCAGATAAA 60.014 38.462 10.85 0.00 40.41 1.40
2545 3189 4.713553 TCCAGCAGATAAACTTTGTCACA 58.286 39.130 1.60 0.00 0.00 3.58
2546 3190 5.129634 TCCAGCAGATAAACTTTGTCACAA 58.870 37.500 1.60 0.00 0.00 3.33
2679 3527 6.090483 TCTTGTTTCAACTTTCAACCACAA 57.910 33.333 0.00 0.00 0.00 3.33
2681 3529 5.201713 TGTTTCAACTTTCAACCACAACA 57.798 34.783 0.00 0.00 0.00 3.33
2694 3542 4.589216 ACCACAACATTGAAATCACAGG 57.411 40.909 0.00 0.00 0.00 4.00
2695 3543 3.243839 ACCACAACATTGAAATCACAGGC 60.244 43.478 0.00 0.00 0.00 4.85
2696 3544 3.006110 CCACAACATTGAAATCACAGGCT 59.994 43.478 0.00 0.00 0.00 4.58
2697 3545 4.232221 CACAACATTGAAATCACAGGCTC 58.768 43.478 0.00 0.00 0.00 4.70
2698 3546 3.890756 ACAACATTGAAATCACAGGCTCA 59.109 39.130 0.00 0.00 0.00 4.26
2699 3547 4.232221 CAACATTGAAATCACAGGCTCAC 58.768 43.478 0.00 0.00 0.00 3.51
2700 3548 3.489355 ACATTGAAATCACAGGCTCACA 58.511 40.909 0.00 0.00 0.00 3.58
2701 3549 3.504906 ACATTGAAATCACAGGCTCACAG 59.495 43.478 0.00 0.00 0.00 3.66
2733 3581 8.899427 TTGATTGGCTTATTCAATTCAAAACA 57.101 26.923 0.00 0.00 35.26 2.83
2858 3707 3.813596 GCCGACTACTTGGCCATG 58.186 61.111 16.76 16.76 45.73 3.66
2907 3760 4.155826 CGGAATCACAAAGCACTCCATTTA 59.844 41.667 0.00 0.00 0.00 1.40
3038 3891 7.736447 AGGTTTCAACAGATTAGAGAAAGTG 57.264 36.000 0.00 0.00 0.00 3.16
3134 3987 7.996644 AGTAGGATTTTTGTAGAGGTTTTGTGA 59.003 33.333 0.00 0.00 0.00 3.58
3205 4058 3.431486 GGACGGATGAGCAGAAGAAGATT 60.431 47.826 0.00 0.00 0.00 2.40
3379 4240 2.579684 CTACCTGTTGCCTCGCCTCC 62.580 65.000 0.00 0.00 0.00 4.30
3382 4243 4.704833 TGTTGCCTCGCCTCCTGC 62.705 66.667 0.00 0.00 0.00 4.85
3384 4245 4.399395 TTGCCTCGCCTCCTGCTG 62.399 66.667 0.00 0.00 38.05 4.41
3392 4253 2.493675 CTCGCCTCCTGCTGCTAATATA 59.506 50.000 0.00 0.00 38.05 0.86
3393 4254 2.493675 TCGCCTCCTGCTGCTAATATAG 59.506 50.000 0.00 0.00 38.05 1.31
3398 4259 5.163561 GCCTCCTGCTGCTAATATAGTCTAG 60.164 48.000 0.00 0.00 36.87 2.43
3427 4398 7.524065 AGGAGTATATAACGTTTGTTTGTTGC 58.476 34.615 5.91 0.00 39.54 4.17
3431 4402 4.770351 ATAACGTTTGTTTGTTGCTTGC 57.230 36.364 5.91 0.00 39.54 4.01
3434 4405 3.839293 ACGTTTGTTTGTTGCTTGCTTA 58.161 36.364 0.00 0.00 0.00 3.09
3435 4406 3.610677 ACGTTTGTTTGTTGCTTGCTTAC 59.389 39.130 0.00 0.00 0.00 2.34
3436 4407 3.857093 CGTTTGTTTGTTGCTTGCTTACT 59.143 39.130 0.00 0.00 0.00 2.24
3437 4408 4.326009 CGTTTGTTTGTTGCTTGCTTACTT 59.674 37.500 0.00 0.00 0.00 2.24
3630 4601 1.078848 GCAGCTGATCGTGGAGGTT 60.079 57.895 20.43 0.00 0.00 3.50
4242 5528 1.663643 CAGGTACACACACACACACAC 59.336 52.381 0.00 0.00 0.00 3.82
4243 5529 1.276705 AGGTACACACACACACACACA 59.723 47.619 0.00 0.00 0.00 3.72
4246 5532 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4247 5533 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4248 5534 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4249 5535 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4250 5536 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4251 5537 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4253 5539 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4254 5540 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4255 5541 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4256 5542 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4257 5543 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4258 5544 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4259 5545 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4260 5546 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4261 5547 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4262 5548 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4263 5549 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4264 5550 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4266 5552 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4268 5554 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4269 5555 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4273 5559 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4274 5560 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4275 5561 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4410 5854 1.333931 GACATGATCGAGACGGTGCTA 59.666 52.381 0.00 0.00 0.00 3.49
4551 6019 4.735822 CGAATAAGACTGACGAGATTCCAC 59.264 45.833 0.00 0.00 0.00 4.02
4681 6149 4.141846 GCATTTCTCTCATCCACTCCACTA 60.142 45.833 0.00 0.00 0.00 2.74
4682 6150 5.627735 GCATTTCTCTCATCCACTCCACTAA 60.628 44.000 0.00 0.00 0.00 2.24
4693 6161 3.679980 CCACTCCACTAAAGTTGATCACG 59.320 47.826 0.00 0.00 0.00 4.35
4888 6361 1.271102 TCCGGCCTAATTTTTGTGTGC 59.729 47.619 0.00 0.00 0.00 4.57
4892 6369 1.455408 GCCTAATTTTTGTGTGCGTGC 59.545 47.619 0.00 0.00 0.00 5.34
4893 6370 2.862140 GCCTAATTTTTGTGTGCGTGCT 60.862 45.455 0.00 0.00 0.00 4.40
4894 6371 2.725723 CCTAATTTTTGTGTGCGTGCTG 59.274 45.455 0.00 0.00 0.00 4.41
4895 6372 0.929615 AATTTTTGTGTGCGTGCTGC 59.070 45.000 0.00 0.00 46.70 5.25
4930 6407 0.904865 AGGTCTGCATCGTCCTTGGA 60.905 55.000 0.00 0.00 0.00 3.53
4939 6416 1.374758 CGTCCTTGGAGTGTGCCTC 60.375 63.158 0.00 0.00 39.67 4.70
5031 6508 1.654105 GACCACTTCTACGACGCATTG 59.346 52.381 0.00 0.00 0.00 2.82
5036 6513 1.654105 CTTCTACGACGCATTGTGTCC 59.346 52.381 21.36 7.12 39.58 4.02
5067 6545 4.272018 ACTGCAAGAGATCATTTACGATGC 59.728 41.667 0.00 0.00 37.43 3.91
5072 6550 5.140747 AGAGATCATTTACGATGCCTACC 57.859 43.478 0.00 0.00 0.00 3.18
5075 6553 2.816689 TCATTTACGATGCCTACCACG 58.183 47.619 0.00 0.00 0.00 4.94
5086 6564 1.997669 CCTACCACGAACTCTCTTGC 58.002 55.000 0.00 0.00 0.00 4.01
5087 6565 1.546476 CCTACCACGAACTCTCTTGCT 59.454 52.381 0.00 0.00 0.00 3.91
5089 6567 1.871080 ACCACGAACTCTCTTGCTTG 58.129 50.000 0.00 0.00 0.00 4.01
5090 6568 0.514691 CCACGAACTCTCTTGCTTGC 59.485 55.000 0.00 0.00 0.00 4.01
5091 6569 1.220529 CACGAACTCTCTTGCTTGCA 58.779 50.000 0.00 0.00 0.00 4.08
5124 6610 5.421056 AGAAAGGAACATCATAGTACCACGA 59.579 40.000 0.00 0.00 0.00 4.35
5143 6636 2.352421 CGAACTGTTACAGATGGGACGT 60.352 50.000 20.07 0.00 35.18 4.34
5167 6660 7.172190 CGTTAGATGCATATGGTCAGAGAAAAT 59.828 37.037 3.54 0.00 0.00 1.82
5191 6684 4.219115 TGGTTTAGTCAAAGCAAATGGGA 58.781 39.130 0.00 0.00 46.27 4.37
5248 6743 2.154462 GGTGTGTGGATTTGACTCTGG 58.846 52.381 0.00 0.00 0.00 3.86
5249 6744 2.154462 GTGTGTGGATTTGACTCTGGG 58.846 52.381 0.00 0.00 0.00 4.45
5258 6753 4.710375 GGATTTGACTCTGGGTACTGTAGA 59.290 45.833 0.00 0.00 0.00 2.59
5270 6765 5.067413 TGGGTACTGTAGAATCGACAATCTC 59.933 44.000 0.00 0.00 0.00 2.75
5319 6814 0.884704 ATGGCTTCGCTTTCGTGTGT 60.885 50.000 0.00 0.00 36.96 3.72
5320 6815 1.092921 TGGCTTCGCTTTCGTGTGTT 61.093 50.000 0.00 0.00 36.96 3.32
5398 6893 7.734942 TGCCTTCCAATTAAAAGAAACAGATT 58.265 30.769 1.53 0.00 0.00 2.40
5399 6894 8.210265 TGCCTTCCAATTAAAAGAAACAGATTT 58.790 29.630 1.53 0.00 0.00 2.17
5400 6895 9.056005 GCCTTCCAATTAAAAGAAACAGATTTT 57.944 29.630 1.53 0.00 33.42 1.82
5431 6926 7.817478 GGGGTAATTAAAAGAAACAGATGGTTG 59.183 37.037 0.00 0.00 40.35 3.77
5448 6943 7.012327 CAGATGGTTGTTTAAGAGAACAAGACA 59.988 37.037 3.65 6.79 46.70 3.41
5451 6946 6.431543 TGGTTGTTTAAGAGAACAAGACAACA 59.568 34.615 15.53 2.99 46.70 3.33
5497 6992 9.814899 TGATAAAACACACTTTTGTTGATTCAT 57.185 25.926 0.00 0.00 39.70 2.57
5525 9041 5.867174 TCATAACACGTGAAGGTGATACAAG 59.133 40.000 25.01 0.00 40.38 3.16
5526 9042 2.413837 ACACGTGAAGGTGATACAAGC 58.586 47.619 25.01 0.00 40.38 4.01
5527 9043 2.224185 ACACGTGAAGGTGATACAAGCA 60.224 45.455 25.01 0.00 40.38 3.91
5528 9044 3.002791 CACGTGAAGGTGATACAAGCAT 58.997 45.455 10.90 0.00 40.38 3.79
5544 9060 1.164411 GCATGACGGTTCACATCCAA 58.836 50.000 0.00 0.00 33.38 3.53
5545 9061 1.135689 GCATGACGGTTCACATCCAAC 60.136 52.381 0.00 0.00 33.38 3.77
5554 9070 3.244181 GGTTCACATCCAACCTTTGCATT 60.244 43.478 0.00 0.00 40.33 3.56
5557 9073 6.127479 GGTTCACATCCAACCTTTGCATTATA 60.127 38.462 0.00 0.00 40.33 0.98
5560 9076 6.889177 TCACATCCAACCTTTGCATTATAAGA 59.111 34.615 0.00 0.00 0.00 2.10
5617 9133 1.797025 AGAAAGGAAGGACGAAAGCG 58.203 50.000 0.00 0.00 44.79 4.68
5642 11002 1.990799 CCACGACAAGAGTAATCGCA 58.009 50.000 0.00 0.00 39.47 5.10
5663 11023 2.322355 ATGAAGGTGAAGAGCCGATG 57.678 50.000 0.00 0.00 0.00 3.84
5720 11080 2.292267 CATCCTTGACCGCTTGCTAAT 58.708 47.619 0.00 0.00 0.00 1.73
5726 11086 1.165270 GACCGCTTGCTAATGTTGGT 58.835 50.000 0.00 0.00 0.00 3.67
5727 11087 0.881118 ACCGCTTGCTAATGTTGGTG 59.119 50.000 0.00 0.00 0.00 4.17
5803 11163 1.002366 GCGCTGATTTGTCGACATCT 58.998 50.000 20.80 9.69 0.00 2.90
5804 11164 1.005557 GCGCTGATTTGTCGACATCTC 60.006 52.381 20.80 18.34 0.00 2.75
5805 11165 1.253800 CGCTGATTTGTCGACATCTCG 59.746 52.381 20.80 16.88 41.65 4.04
5807 11167 2.262211 CTGATTTGTCGACATCTCGCA 58.738 47.619 20.80 12.14 39.96 5.10
5817 11177 2.632377 GACATCTCGCAATCCTTCCAA 58.368 47.619 0.00 0.00 0.00 3.53
5818 11178 3.209410 GACATCTCGCAATCCTTCCAAT 58.791 45.455 0.00 0.00 0.00 3.16
5822 11182 2.026356 TCTCGCAATCCTTCCAATCCAA 60.026 45.455 0.00 0.00 0.00 3.53
5832 11192 4.537688 TCCTTCCAATCCAATCTCAGTCTT 59.462 41.667 0.00 0.00 0.00 3.01
5865 11225 5.896678 TGAATCCCCTTCAAAACAAAAGAGA 59.103 36.000 0.00 0.00 40.92 3.10
5866 11226 6.040842 TGAATCCCCTTCAAAACAAAAGAGAG 59.959 38.462 0.00 0.00 40.92 3.20
5867 11227 5.124036 TCCCCTTCAAAACAAAAGAGAGA 57.876 39.130 0.00 0.00 0.00 3.10
5870 11230 5.284864 CCCTTCAAAACAAAAGAGAGAAGC 58.715 41.667 0.00 0.00 31.99 3.86
5872 11232 6.332630 CCTTCAAAACAAAAGAGAGAAGCAA 58.667 36.000 0.00 0.00 31.99 3.91
5896 11259 1.975660 CCCGTGAAGGAAAGGTTTCA 58.024 50.000 4.89 0.00 45.00 2.69
5907 11270 4.352298 AGGAAAGGTTTCAATCCTCAGACT 59.648 41.667 4.89 0.00 37.80 3.24
5947 11310 5.105877 GGGCTACTACATCCCTTTCAAAAAC 60.106 44.000 0.00 0.00 37.08 2.43
5954 11317 5.988287 ACATCCCTTTCAAAAACAACACAT 58.012 33.333 0.00 0.00 0.00 3.21
5982 11345 6.516360 GCAAGAGGCTTTTGAAGAGAAGATTT 60.516 38.462 20.77 0.00 40.25 2.17
5990 11353 6.974932 TTTGAAGAGAAGATTTGATCCTCG 57.025 37.500 0.00 0.00 0.00 4.63
5992 11355 4.467795 TGAAGAGAAGATTTGATCCTCGGT 59.532 41.667 0.00 0.00 0.00 4.69
5994 11357 4.026744 AGAGAAGATTTGATCCTCGGTCA 58.973 43.478 0.00 0.00 0.00 4.02
5996 11359 5.130145 AGAGAAGATTTGATCCTCGGTCAAT 59.870 40.000 0.00 0.00 35.68 2.57
6003 11366 2.837591 TGATCCTCGGTCAATCTTCCAA 59.162 45.455 0.00 0.00 0.00 3.53
6005 11368 2.257207 TCCTCGGTCAATCTTCCAACT 58.743 47.619 0.00 0.00 0.00 3.16
6011 11374 1.200020 GTCAATCTTCCAACTTGGCCG 59.800 52.381 2.52 0.00 37.47 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.128349 CGATAACGATACAACAAGGGGG 58.872 50.000 0.00 0.00 42.66 5.40
2 3 3.788937 ACGATAACGATACAACAAGGGG 58.211 45.455 0.00 0.00 42.66 4.79
3 4 6.267817 TCTAACGATAACGATACAACAAGGG 58.732 40.000 0.00 0.00 42.66 3.95
4 5 7.165483 GTCTCTAACGATAACGATACAACAAGG 59.835 40.741 0.00 0.00 42.66 3.61
5 6 7.695201 TGTCTCTAACGATAACGATACAACAAG 59.305 37.037 0.00 0.00 42.66 3.16
6 7 7.529158 TGTCTCTAACGATAACGATACAACAA 58.471 34.615 0.00 0.00 42.66 2.83
7 8 7.075674 TGTCTCTAACGATAACGATACAACA 57.924 36.000 0.00 0.00 42.66 3.33
8 9 7.482743 TGTTGTCTCTAACGATAACGATACAAC 59.517 37.037 0.00 5.91 42.66 3.32
9 10 7.529158 TGTTGTCTCTAACGATAACGATACAA 58.471 34.615 0.00 0.00 42.66 2.41
10 11 7.075674 TGTTGTCTCTAACGATAACGATACA 57.924 36.000 0.00 0.00 42.66 2.29
11 12 7.695618 ACTTGTTGTCTCTAACGATAACGATAC 59.304 37.037 0.00 0.00 42.66 2.24
12 13 7.755591 ACTTGTTGTCTCTAACGATAACGATA 58.244 34.615 0.00 0.00 42.66 2.92
13 14 6.618811 ACTTGTTGTCTCTAACGATAACGAT 58.381 36.000 0.00 0.00 42.66 3.73
14 15 6.005583 ACTTGTTGTCTCTAACGATAACGA 57.994 37.500 0.00 0.00 42.66 3.85
15 16 6.468319 CCTACTTGTTGTCTCTAACGATAACG 59.532 42.308 0.00 0.00 45.75 3.18
16 17 6.253083 GCCTACTTGTTGTCTCTAACGATAAC 59.747 42.308 0.00 0.00 36.10 1.89
106 138 8.172352 TGATTCGGTTCATTCTTTTCCTTTTA 57.828 30.769 0.00 0.00 0.00 1.52
124 156 2.199291 GCTTCTTGCCATTGATTCGG 57.801 50.000 0.00 0.00 35.15 4.30
149 198 1.678598 CCCATGAAATGCACGGCCAT 61.679 55.000 2.24 0.00 44.97 4.40
242 303 0.249657 CTAGCAGGGGAGTTCGATGC 60.250 60.000 0.00 0.00 37.15 3.91
275 336 2.081526 GCACGAGCACATACACTGG 58.918 57.895 0.00 0.00 41.58 4.00
290 363 2.126346 GCGCCATTTGGACTGCAC 60.126 61.111 0.00 0.00 37.39 4.57
352 425 5.352569 ACAAGAGAGAAACATATCGCAAAGG 59.647 40.000 0.00 0.00 0.00 3.11
357 444 7.527084 AGTTTACAAGAGAGAAACATATCGC 57.473 36.000 0.00 0.00 35.88 4.58
370 457 3.421826 CGCAGCGTGTAAGTTTACAAGAG 60.422 47.826 17.99 11.77 44.46 2.85
372 459 2.822827 CGCAGCGTGTAAGTTTACAAG 58.177 47.619 6.65 11.85 44.46 3.16
407 494 3.989705 TGCAGTAATTCACATTCGACG 57.010 42.857 0.00 0.00 0.00 5.12
408 495 5.469373 TCATGCAGTAATTCACATTCGAC 57.531 39.130 0.00 0.00 0.00 4.20
409 496 5.643348 AGTTCATGCAGTAATTCACATTCGA 59.357 36.000 0.00 0.00 0.00 3.71
410 497 5.735892 CAGTTCATGCAGTAATTCACATTCG 59.264 40.000 0.00 0.00 0.00 3.34
428 515 2.031012 CAGGACCAGCGCAGTTCA 59.969 61.111 11.47 0.00 0.00 3.18
441 528 0.684479 CCTCCTCGTGATGTCCAGGA 60.684 60.000 0.00 0.00 37.96 3.86
443 530 0.743688 CTCCTCCTCGTGATGTCCAG 59.256 60.000 0.00 0.00 0.00 3.86
454 541 3.389656 CCAAAATACTCCTCCTCCTCCTC 59.610 52.174 0.00 0.00 0.00 3.71
455 542 3.014110 TCCAAAATACTCCTCCTCCTCCT 59.986 47.826 0.00 0.00 0.00 3.69
456 543 3.385115 TCCAAAATACTCCTCCTCCTCC 58.615 50.000 0.00 0.00 0.00 4.30
493 580 3.502211 GGTCCATCAAAACACGACAGATT 59.498 43.478 0.00 0.00 0.00 2.40
549 644 2.434359 GAAAGACGGGGGCTCGTG 60.434 66.667 10.65 0.00 43.96 4.35
636 871 3.064931 CTCGGTCGGCTTTACTTCTTTT 58.935 45.455 0.00 0.00 0.00 2.27
640 875 1.411493 CGCTCGGTCGGCTTTACTTC 61.411 60.000 0.00 0.00 0.00 3.01
667 902 2.025155 CTACGGCCTACATGAGTCAGT 58.975 52.381 0.00 0.00 0.00 3.41
835 1111 2.894763 ATAGAGCAGAGCAAGAGCAG 57.105 50.000 0.00 0.00 45.49 4.24
836 1112 4.403752 TCTTTATAGAGCAGAGCAAGAGCA 59.596 41.667 0.00 0.00 45.49 4.26
837 1113 4.942852 TCTTTATAGAGCAGAGCAAGAGC 58.057 43.478 0.00 0.00 42.56 4.09
839 1115 6.286240 TGTTCTTTATAGAGCAGAGCAAGA 57.714 37.500 0.00 0.00 36.79 3.02
883 1160 5.070446 AGAGAGAGAGAGAGCGAAAGAGATA 59.930 44.000 0.00 0.00 0.00 1.98
897 1174 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
908 1185 2.989909 TGTGCAGAGAGAGAGAGAGAG 58.010 52.381 0.00 0.00 0.00 3.20
911 1188 2.241941 AGGATGTGCAGAGAGAGAGAGA 59.758 50.000 0.00 0.00 0.00 3.10
946 1223 3.055747 GGAGAGTAAACAGAACAGAGGGG 60.056 52.174 0.00 0.00 0.00 4.79
954 1231 5.227569 TGAGCAATGGAGAGTAAACAGAA 57.772 39.130 0.00 0.00 0.00 3.02
955 1232 4.890158 TGAGCAATGGAGAGTAAACAGA 57.110 40.909 0.00 0.00 0.00 3.41
956 1233 5.121454 GTCTTGAGCAATGGAGAGTAAACAG 59.879 44.000 0.00 0.00 0.00 3.16
957 1234 4.997395 GTCTTGAGCAATGGAGAGTAAACA 59.003 41.667 0.00 0.00 0.00 2.83
958 1235 4.997395 TGTCTTGAGCAATGGAGAGTAAAC 59.003 41.667 0.00 0.00 0.00 2.01
1058 1338 5.279456 GGAGAGGGAGAGAGATTAATTGCTC 60.279 48.000 9.35 9.35 0.00 4.26
1111 1398 7.447374 TCGGTTGATTAACAAGATGATTTGT 57.553 32.000 2.50 0.00 42.82 2.83
1169 1459 7.555087 TCAGATTCTTGATTCTCTCTCTTTCC 58.445 38.462 0.00 0.00 0.00 3.13
1172 1462 7.722949 ACTCAGATTCTTGATTCTCTCTCTT 57.277 36.000 0.00 0.00 0.00 2.85
1217 1520 1.067000 CCACCTCTGACTCTGAAGCTG 60.067 57.143 0.00 0.00 0.00 4.24
1222 1525 2.174360 CATGTCCACCTCTGACTCTGA 58.826 52.381 0.00 0.00 33.83 3.27
1223 1526 2.094286 GTCATGTCCACCTCTGACTCTG 60.094 54.545 0.00 0.00 36.07 3.35
1224 1527 2.175202 GTCATGTCCACCTCTGACTCT 58.825 52.381 0.00 0.00 36.07 3.24
1225 1528 1.135257 CGTCATGTCCACCTCTGACTC 60.135 57.143 0.00 0.00 36.67 3.36
1226 1529 0.891373 CGTCATGTCCACCTCTGACT 59.109 55.000 0.00 0.00 36.67 3.41
1227 1530 0.603569 ACGTCATGTCCACCTCTGAC 59.396 55.000 0.00 0.00 35.72 3.51
1276 1579 2.048222 GAAGCCGCTTTTTGCCCC 60.048 61.111 7.16 0.00 38.78 5.80
1277 1580 0.945743 CAAGAAGCCGCTTTTTGCCC 60.946 55.000 19.91 1.83 38.78 5.36
1318 1621 0.327576 ACGGAAGGGGATCCTCCATT 60.328 55.000 8.43 0.00 44.07 3.16
1319 1622 0.764752 GACGGAAGGGGATCCTCCAT 60.765 60.000 8.43 1.99 44.07 3.41
1320 1623 1.382695 GACGGAAGGGGATCCTCCA 60.383 63.158 8.43 0.00 44.07 3.86
1321 1624 1.075151 AGACGGAAGGGGATCCTCC 60.075 63.158 8.43 8.31 44.07 4.30
1322 1625 1.116536 GGAGACGGAAGGGGATCCTC 61.117 65.000 12.58 7.90 44.07 3.71
1324 1627 2.141448 GGGAGACGGAAGGGGATCC 61.141 68.421 1.92 1.92 36.05 3.36
1344 1647 4.082523 GTGCCACTAGCTGCCGGA 62.083 66.667 5.05 0.00 44.23 5.14
1365 1668 0.318120 GGATGGTGTTTTGGCTGGTG 59.682 55.000 0.00 0.00 0.00 4.17
1461 1775 3.391382 CGAGGAAGGAAGGCGGGT 61.391 66.667 0.00 0.00 0.00 5.28
1465 1779 2.436824 GGTGCGAGGAAGGAAGGC 60.437 66.667 0.00 0.00 0.00 4.35
1466 1780 0.391793 GAAGGTGCGAGGAAGGAAGG 60.392 60.000 0.00 0.00 0.00 3.46
1467 1781 0.321671 TGAAGGTGCGAGGAAGGAAG 59.678 55.000 0.00 0.00 0.00 3.46
1468 1782 0.034896 GTGAAGGTGCGAGGAAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
1469 1783 1.118965 TGTGAAGGTGCGAGGAAGGA 61.119 55.000 0.00 0.00 0.00 3.36
1470 1784 0.951040 GTGTGAAGGTGCGAGGAAGG 60.951 60.000 0.00 0.00 0.00 3.46
1471 1785 0.034059 AGTGTGAAGGTGCGAGGAAG 59.966 55.000 0.00 0.00 0.00 3.46
1472 1786 0.033504 GAGTGTGAAGGTGCGAGGAA 59.966 55.000 0.00 0.00 0.00 3.36
1502 1816 7.001099 AGGCAAAAAGTAGTACTAGTAGCAA 57.999 36.000 10.68 0.00 0.00 3.91
1503 1817 6.600882 AGGCAAAAAGTAGTACTAGTAGCA 57.399 37.500 10.68 0.00 0.00 3.49
1504 1818 5.742926 CGAGGCAAAAAGTAGTACTAGTAGC 59.257 44.000 10.68 11.74 0.00 3.58
1505 1819 6.264088 CCGAGGCAAAAAGTAGTACTAGTAG 58.736 44.000 10.68 0.00 0.00 2.57
1506 1820 5.393461 GCCGAGGCAAAAAGTAGTACTAGTA 60.393 44.000 10.68 0.00 41.49 1.82
1507 1821 4.620097 GCCGAGGCAAAAAGTAGTACTAGT 60.620 45.833 9.58 3.18 41.49 2.57
1508 1822 3.864003 GCCGAGGCAAAAAGTAGTACTAG 59.136 47.826 9.58 0.00 41.49 2.57
1509 1823 3.512724 AGCCGAGGCAAAAAGTAGTACTA 59.487 43.478 17.18 0.00 44.88 1.82
1510 1824 2.302157 AGCCGAGGCAAAAAGTAGTACT 59.698 45.455 17.18 0.00 44.88 2.73
1511 1825 2.671888 GAGCCGAGGCAAAAAGTAGTAC 59.328 50.000 17.18 0.00 44.88 2.73
1534 1848 5.449862 GCATCTTCTAGAGAGCGAGAAAAGA 60.450 44.000 0.00 0.00 37.93 2.52
1569 1929 6.016024 ACGGGCATGATACGTAGATACTTTTA 60.016 38.462 0.08 0.00 39.30 1.52
1570 1930 5.221382 ACGGGCATGATACGTAGATACTTTT 60.221 40.000 0.08 0.00 39.30 2.27
1571 1931 4.280174 ACGGGCATGATACGTAGATACTTT 59.720 41.667 0.08 0.00 39.30 2.66
1572 1932 3.825014 ACGGGCATGATACGTAGATACTT 59.175 43.478 0.08 0.00 39.30 2.24
1573 1933 3.418995 ACGGGCATGATACGTAGATACT 58.581 45.455 0.08 0.00 39.30 2.12
1581 1948 1.336877 CGTATGACGGGCATGATACG 58.663 55.000 6.59 4.82 38.08 3.06
1599 1966 1.837538 AACGCAAATCACACGGACCG 61.838 55.000 13.61 13.61 0.00 4.79
1601 1968 0.996727 GCAACGCAAATCACACGGAC 60.997 55.000 0.00 0.00 0.00 4.79
1604 1971 1.187704 CAAAGCAACGCAAATCACACG 59.812 47.619 0.00 0.00 0.00 4.49
1617 1984 0.387878 CGGCGGTTAATGCAAAGCAA 60.388 50.000 0.00 0.00 43.62 3.91
1632 1999 0.460987 AGAGAAGGCAGAATTCGGCG 60.461 55.000 21.71 0.00 37.94 6.46
1636 2003 1.561542 TGGGGAGAGAAGGCAGAATTC 59.438 52.381 0.00 0.00 0.00 2.17
1656 2031 4.587891 CCAGAAGGAATTTTCAGAGAGCT 58.412 43.478 0.00 0.00 36.89 4.09
1658 2033 3.693578 GGCCAGAAGGAATTTTCAGAGAG 59.306 47.826 0.00 0.00 36.89 3.20
1671 2046 1.601171 CAGTCCAGAGGCCAGAAGG 59.399 63.158 5.01 0.53 38.23 3.46
1672 2047 1.078567 GCAGTCCAGAGGCCAGAAG 60.079 63.158 5.01 0.00 0.00 2.85
1684 2059 2.674380 CACAAGGGCAGGCAGTCC 60.674 66.667 0.00 0.00 44.66 3.85
1686 2061 3.857309 GAGCACAAGGGCAGGCAGT 62.857 63.158 0.00 0.00 35.83 4.40
1687 2062 2.189191 TAGAGCACAAGGGCAGGCAG 62.189 60.000 0.00 0.00 35.83 4.85
1688 2063 1.778017 TTAGAGCACAAGGGCAGGCA 61.778 55.000 0.00 0.00 35.83 4.75
1689 2064 0.394899 ATTAGAGCACAAGGGCAGGC 60.395 55.000 0.00 0.00 35.83 4.85
1690 2065 2.134789 AATTAGAGCACAAGGGCAGG 57.865 50.000 0.00 0.00 35.83 4.85
1691 2066 3.507233 TCAAAATTAGAGCACAAGGGCAG 59.493 43.478 0.00 0.00 35.83 4.85
1704 2079 4.433615 TGCTCTAGCCGAGTCAAAATTAG 58.566 43.478 0.00 0.00 41.98 1.73
1729 2104 4.192429 TCATGTGATGTGTGAGTCGAAT 57.808 40.909 0.00 0.00 0.00 3.34
1753 2128 9.450807 CAAGAGACTTTTCGTTCATATTTTTGT 57.549 29.630 0.00 0.00 0.00 2.83
1754 2129 9.450807 ACAAGAGACTTTTCGTTCATATTTTTG 57.549 29.630 0.00 0.00 0.00 2.44
1759 2134 7.657761 AGACAACAAGAGACTTTTCGTTCATAT 59.342 33.333 0.00 0.00 0.00 1.78
1760 2135 6.984474 AGACAACAAGAGACTTTTCGTTCATA 59.016 34.615 0.00 0.00 0.00 2.15
1762 2137 5.175859 AGACAACAAGAGACTTTTCGTTCA 58.824 37.500 0.00 0.00 0.00 3.18
1763 2138 5.520649 AGAGACAACAAGAGACTTTTCGTTC 59.479 40.000 0.00 0.00 0.00 3.95
1765 2140 4.806247 CAGAGACAACAAGAGACTTTTCGT 59.194 41.667 0.00 0.00 0.00 3.85
1766 2141 4.806247 ACAGAGACAACAAGAGACTTTTCG 59.194 41.667 0.00 0.00 0.00 3.46
1767 2142 5.235401 GGACAGAGACAACAAGAGACTTTTC 59.765 44.000 0.00 0.00 0.00 2.29
1797 2172 2.048222 CAAGAGAAGGCGTGCGGA 60.048 61.111 0.00 0.00 0.00 5.54
1802 2177 4.537135 TTTCATAGTCAAGAGAAGGCGT 57.463 40.909 0.00 0.00 0.00 5.68
1804 2179 8.555361 GTTCATATTTCATAGTCAAGAGAAGGC 58.445 37.037 0.00 0.00 0.00 4.35
1823 2198 5.455056 AAAGTAGAGGCGATCGTTCATAT 57.545 39.130 17.81 0.00 0.00 1.78
1839 2214 7.711339 AGGACAAGACAAAGTAGTGAAAAGTAG 59.289 37.037 0.00 0.00 0.00 2.57
1849 2224 5.289675 CGAAGCATAGGACAAGACAAAGTAG 59.710 44.000 0.00 0.00 0.00 2.57
1854 2229 2.565391 TCCGAAGCATAGGACAAGACAA 59.435 45.455 0.00 0.00 0.00 3.18
1855 2230 2.176045 TCCGAAGCATAGGACAAGACA 58.824 47.619 0.00 0.00 0.00 3.41
1856 2231 2.961526 TCCGAAGCATAGGACAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
1857 2232 4.501571 GCTAATCCGAAGCATAGGACAAGA 60.502 45.833 0.00 0.00 39.66 3.02
1858 2233 3.743396 GCTAATCCGAAGCATAGGACAAG 59.257 47.826 0.00 0.00 39.66 3.16
1869 2244 2.004583 TTGTGGACGCTAATCCGAAG 57.995 50.000 0.00 0.00 42.24 3.79
1874 2249 3.119849 ACTGCAAATTGTGGACGCTAATC 60.120 43.478 0.00 0.00 0.00 1.75
1875 2250 2.819608 ACTGCAAATTGTGGACGCTAAT 59.180 40.909 0.00 0.00 0.00 1.73
1893 2288 5.569059 GCGACATGGAAATTCTTGTAAACTG 59.431 40.000 0.00 0.00 0.00 3.16
1942 2340 2.101415 GCCTTGATGGGTCATTTTAGGC 59.899 50.000 0.00 0.00 36.04 3.93
1946 2344 1.571955 GGGCCTTGATGGGTCATTTT 58.428 50.000 0.84 0.00 33.56 1.82
1967 2366 2.419574 CGGTGGTAATGAACAGGTAGGG 60.420 54.545 0.00 0.00 0.00 3.53
1968 2367 2.235402 ACGGTGGTAATGAACAGGTAGG 59.765 50.000 0.00 0.00 0.00 3.18
1969 2368 3.056393 TCACGGTGGTAATGAACAGGTAG 60.056 47.826 8.50 0.00 0.00 3.18
1978 2377 6.385843 TCAATGAAATTTCACGGTGGTAATG 58.614 36.000 22.71 10.46 40.49 1.90
1997 2396 7.600375 AGCATGTACGGTAATATTCTCTCAATG 59.400 37.037 0.00 0.00 0.00 2.82
1999 2398 7.050970 AGCATGTACGGTAATATTCTCTCAA 57.949 36.000 0.00 0.00 0.00 3.02
2014 2439 2.285256 GCGTCTTGATTGAGCATGTACG 60.285 50.000 0.00 0.00 0.00 3.67
2026 2451 3.214328 ACTTTGAAACAGGCGTCTTGAT 58.786 40.909 0.00 0.00 0.00 2.57
2030 2455 3.391049 GAGTACTTTGAAACAGGCGTCT 58.609 45.455 0.00 0.00 0.00 4.18
2033 2458 1.804748 GGGAGTACTTTGAAACAGGCG 59.195 52.381 0.00 0.00 0.00 5.52
2034 2459 3.075148 GAGGGAGTACTTTGAAACAGGC 58.925 50.000 0.00 0.00 0.00 4.85
2035 2460 3.676093 GGAGGGAGTACTTTGAAACAGG 58.324 50.000 0.00 0.00 0.00 4.00
2036 2461 3.244112 ACGGAGGGAGTACTTTGAAACAG 60.244 47.826 0.00 0.00 0.00 3.16
2037 2462 2.701951 ACGGAGGGAGTACTTTGAAACA 59.298 45.455 0.00 0.00 0.00 2.83
2038 2463 3.397849 ACGGAGGGAGTACTTTGAAAC 57.602 47.619 0.00 0.00 0.00 2.78
2039 2464 3.244318 GGAACGGAGGGAGTACTTTGAAA 60.244 47.826 0.00 0.00 0.00 2.69
2040 2465 2.301009 GGAACGGAGGGAGTACTTTGAA 59.699 50.000 0.00 0.00 0.00 2.69
2041 2466 1.897802 GGAACGGAGGGAGTACTTTGA 59.102 52.381 0.00 0.00 0.00 2.69
2042 2467 1.900486 AGGAACGGAGGGAGTACTTTG 59.100 52.381 0.00 0.00 0.00 2.77
2043 2468 2.322339 AGGAACGGAGGGAGTACTTT 57.678 50.000 0.00 0.00 0.00 2.66
2044 2469 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
2047 2472 4.763793 CGATATTTAGGAACGGAGGGAGTA 59.236 45.833 0.00 0.00 0.00 2.59
2051 2476 2.631545 ACCGATATTTAGGAACGGAGGG 59.368 50.000 0.00 0.00 45.31 4.30
2054 2479 5.361857 AGAAAGACCGATATTTAGGAACGGA 59.638 40.000 0.00 0.00 45.31 4.69
2056 2481 7.646314 TCTAGAAAGACCGATATTTAGGAACG 58.354 38.462 0.00 0.00 0.00 3.95
2069 2494 6.647067 ACTTGTTGAAATCTCTAGAAAGACCG 59.353 38.462 0.00 0.00 0.00 4.79
2070 2495 7.657761 TCACTTGTTGAAATCTCTAGAAAGACC 59.342 37.037 0.00 0.00 0.00 3.85
2072 2497 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2074 2499 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2075 2500 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2076 2501 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2077 2502 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2079 2504 8.037758 CCTATGTAGTCACTTGTTGAAATCTCT 58.962 37.037 0.00 0.00 35.39 3.10
2080 2505 8.035394 TCCTATGTAGTCACTTGTTGAAATCTC 58.965 37.037 0.00 0.00 35.39 2.75
2081 2506 7.907389 TCCTATGTAGTCACTTGTTGAAATCT 58.093 34.615 0.00 0.00 35.39 2.40
2082 2507 8.547967 TTCCTATGTAGTCACTTGTTGAAATC 57.452 34.615 0.00 0.00 35.39 2.17
2083 2508 7.119846 GCTTCCTATGTAGTCACTTGTTGAAAT 59.880 37.037 0.00 0.00 35.39 2.17
2084 2509 6.426937 GCTTCCTATGTAGTCACTTGTTGAAA 59.573 38.462 0.00 0.00 35.39 2.69
2085 2510 5.932303 GCTTCCTATGTAGTCACTTGTTGAA 59.068 40.000 0.00 0.00 35.39 2.69
2086 2511 5.011635 TGCTTCCTATGTAGTCACTTGTTGA 59.988 40.000 0.00 0.00 0.00 3.18
2087 2512 5.237815 TGCTTCCTATGTAGTCACTTGTTG 58.762 41.667 0.00 0.00 0.00 3.33
2088 2513 5.483685 TGCTTCCTATGTAGTCACTTGTT 57.516 39.130 0.00 0.00 0.00 2.83
2089 2514 5.483685 TTGCTTCCTATGTAGTCACTTGT 57.516 39.130 0.00 0.00 0.00 3.16
2090 2515 6.801539 TTTTGCTTCCTATGTAGTCACTTG 57.198 37.500 0.00 0.00 0.00 3.16
2091 2516 7.168219 TCATTTTGCTTCCTATGTAGTCACTT 58.832 34.615 0.00 0.00 0.00 3.16
2092 2517 6.711277 TCATTTTGCTTCCTATGTAGTCACT 58.289 36.000 0.00 0.00 0.00 3.41
2093 2518 6.595716 ACTCATTTTGCTTCCTATGTAGTCAC 59.404 38.462 0.00 0.00 0.00 3.67
2094 2519 6.595326 CACTCATTTTGCTTCCTATGTAGTCA 59.405 38.462 0.00 0.00 0.00 3.41
2095 2520 6.818644 TCACTCATTTTGCTTCCTATGTAGTC 59.181 38.462 0.00 0.00 0.00 2.59
2096 2521 6.711277 TCACTCATTTTGCTTCCTATGTAGT 58.289 36.000 0.00 0.00 0.00 2.73
2097 2522 7.615582 TTCACTCATTTTGCTTCCTATGTAG 57.384 36.000 0.00 0.00 0.00 2.74
2098 2523 8.049117 AGATTCACTCATTTTGCTTCCTATGTA 58.951 33.333 0.00 0.00 0.00 2.29
2099 2524 6.888632 AGATTCACTCATTTTGCTTCCTATGT 59.111 34.615 0.00 0.00 0.00 2.29
2100 2525 7.330900 AGATTCACTCATTTTGCTTCCTATG 57.669 36.000 0.00 0.00 0.00 2.23
2101 2526 8.049117 TGTAGATTCACTCATTTTGCTTCCTAT 58.951 33.333 0.00 0.00 0.00 2.57
2102 2527 7.334421 GTGTAGATTCACTCATTTTGCTTCCTA 59.666 37.037 0.00 0.00 35.68 2.94
2103 2528 6.150140 GTGTAGATTCACTCATTTTGCTTCCT 59.850 38.462 0.00 0.00 35.68 3.36
2104 2529 6.150140 AGTGTAGATTCACTCATTTTGCTTCC 59.850 38.462 0.00 0.00 44.07 3.46
2105 2530 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2135 2560 9.682465 ACTACATACGGATGTGTATAGACATAT 57.318 33.333 23.85 0.00 46.11 1.78
2136 2561 8.943002 CACTACATACGGATGTGTATAGACATA 58.057 37.037 23.85 0.93 46.11 2.29
2137 2562 7.094334 CCACTACATACGGATGTGTATAGACAT 60.094 40.741 23.85 14.92 46.11 3.06
2138 2563 6.206048 CCACTACATACGGATGTGTATAGACA 59.794 42.308 23.85 5.03 46.11 3.41
2139 2564 6.206243 ACCACTACATACGGATGTGTATAGAC 59.794 42.308 23.85 0.00 46.11 2.59
2140 2565 6.301486 ACCACTACATACGGATGTGTATAGA 58.699 40.000 23.85 0.57 46.11 1.98
2141 2566 6.430308 AGACCACTACATACGGATGTGTATAG 59.570 42.308 23.85 14.62 46.11 1.31
2142 2567 6.301486 AGACCACTACATACGGATGTGTATA 58.699 40.000 23.85 1.79 46.11 1.47
2143 2568 5.138276 AGACCACTACATACGGATGTGTAT 58.862 41.667 23.85 6.90 46.11 2.29
2144 2569 4.529897 AGACCACTACATACGGATGTGTA 58.470 43.478 23.85 3.01 46.11 2.90
2145 2570 3.362706 AGACCACTACATACGGATGTGT 58.637 45.455 23.85 15.58 46.11 3.72
2146 2571 5.707242 ATAGACCACTACATACGGATGTG 57.293 43.478 23.85 14.95 46.11 3.21
2148 2573 6.745116 TCAAATAGACCACTACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
2149 2574 6.971726 TCAAATAGACCACTACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
2150 2575 6.778834 TTCAAATAGACCACTACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
2151 2576 7.926555 AGATTTCAAATAGACCACTACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
2152 2577 8.873215 AGATTTCAAATAGACCACTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
2199 2624 9.435688 GCAAAAATGTTTTATACTCCCTTCATT 57.564 29.630 0.00 0.00 0.00 2.57
2200 2625 8.592809 TGCAAAAATGTTTTATACTCCCTTCAT 58.407 29.630 0.00 0.00 0.00 2.57
2201 2626 7.957002 TGCAAAAATGTTTTATACTCCCTTCA 58.043 30.769 0.00 0.00 0.00 3.02
2202 2627 8.088365 ACTGCAAAAATGTTTTATACTCCCTTC 58.912 33.333 0.00 0.00 0.00 3.46
2203 2628 7.962441 ACTGCAAAAATGTTTTATACTCCCTT 58.038 30.769 0.00 0.00 0.00 3.95
2204 2629 7.539034 ACTGCAAAAATGTTTTATACTCCCT 57.461 32.000 0.00 0.00 0.00 4.20
2205 2630 8.601845 AAACTGCAAAAATGTTTTATACTCCC 57.398 30.769 0.00 0.00 30.84 4.30
2241 2680 2.840651 CCCAGAATACACCCTCTGTTCT 59.159 50.000 0.00 0.00 37.89 3.01
2316 2928 5.302313 GGATACAGAGACCGAGGTTTAATCT 59.698 44.000 0.00 0.00 0.00 2.40
2318 2930 5.069251 CAGGATACAGAGACCGAGGTTTAAT 59.931 44.000 0.00 0.00 41.41 1.40
2320 2932 3.952323 CAGGATACAGAGACCGAGGTTTA 59.048 47.826 0.00 0.00 41.41 2.01
2325 2937 1.133761 TCCCAGGATACAGAGACCGAG 60.134 57.143 0.00 0.00 41.41 4.63
2328 2940 2.366916 CACATCCCAGGATACAGAGACC 59.633 54.545 0.00 0.00 41.41 3.85
2332 2944 1.486310 GCACACATCCCAGGATACAGA 59.514 52.381 0.00 0.00 41.41 3.41
2363 2975 9.229784 TGTCTACTCGTCGAATATTTTCATTAC 57.770 33.333 0.00 0.00 0.00 1.89
2374 2992 5.060569 CGATGTTTTTGTCTACTCGTCGAAT 59.939 40.000 0.00 0.00 0.00 3.34
2375 2993 4.380678 CGATGTTTTTGTCTACTCGTCGAA 59.619 41.667 0.00 0.00 0.00 3.71
2377 2995 3.479866 GCGATGTTTTTGTCTACTCGTCG 60.480 47.826 0.00 0.00 0.00 5.12
2422 3040 6.961360 AAGTGATACTAGCAGCATAGTACA 57.039 37.500 11.65 9.85 40.21 2.90
2423 3041 6.144724 GCAAAGTGATACTAGCAGCATAGTAC 59.855 42.308 11.65 5.27 40.21 2.73
2424 3042 6.040955 AGCAAAGTGATACTAGCAGCATAGTA 59.959 38.462 11.75 11.75 41.31 1.82
2425 3043 5.053145 GCAAAGTGATACTAGCAGCATAGT 58.947 41.667 0.00 2.57 39.35 2.12
2426 3044 5.177142 CAGCAAAGTGATACTAGCAGCATAG 59.823 44.000 0.00 0.00 33.47 2.23
2427 3045 5.052481 CAGCAAAGTGATACTAGCAGCATA 58.948 41.667 0.00 0.00 33.47 3.14
2428 3046 3.875727 CAGCAAAGTGATACTAGCAGCAT 59.124 43.478 0.00 0.00 33.47 3.79
2429 3047 3.264947 CAGCAAAGTGATACTAGCAGCA 58.735 45.455 0.00 0.00 33.47 4.41
2430 3048 3.265791 ACAGCAAAGTGATACTAGCAGC 58.734 45.455 8.40 0.00 33.47 5.25
2431 3049 5.410924 TGTACAGCAAAGTGATACTAGCAG 58.589 41.667 0.00 4.11 33.47 4.24
2432 3050 5.400066 TGTACAGCAAAGTGATACTAGCA 57.600 39.130 0.00 0.00 33.47 3.49
2433 3051 6.238211 CCAATGTACAGCAAAGTGATACTAGC 60.238 42.308 0.33 0.00 31.86 3.42
2444 3064 3.376859 CGGCTATTCCAATGTACAGCAAA 59.623 43.478 0.33 0.00 34.01 3.68
2485 3105 1.302366 GTGATGCGATCTCATGGCAA 58.698 50.000 2.18 0.00 46.85 4.52
2497 3117 0.578683 CCATCGTTAGCTGTGATGCG 59.421 55.000 15.35 8.14 38.50 4.73
2512 3132 7.398024 AGTTTATCTGCTGGATTATACCCATC 58.602 38.462 0.00 0.00 35.98 3.51
2514 3134 6.763715 AGTTTATCTGCTGGATTATACCCA 57.236 37.500 0.00 0.00 35.98 4.51
2533 3177 4.638421 TCGTTGGAGATTGTGACAAAGTTT 59.362 37.500 0.62 0.00 0.00 2.66
2535 3179 3.560068 GTCGTTGGAGATTGTGACAAAGT 59.440 43.478 0.62 0.00 0.00 2.66
2579 3223 7.179966 TCCTAGTTATCTTACTCCTGACACAA 58.820 38.462 0.00 0.00 0.00 3.33
2679 3527 3.489355 TGTGAGCCTGTGATTTCAATGT 58.511 40.909 0.00 0.00 0.00 2.71
2681 3529 2.490903 GCTGTGAGCCTGTGATTTCAAT 59.509 45.455 0.00 0.00 34.48 2.57
2694 3542 2.608752 CCAATCAAACAAGGCTGTGAGC 60.609 50.000 0.00 0.00 41.46 4.26
2695 3543 2.608752 GCCAATCAAACAAGGCTGTGAG 60.609 50.000 0.00 0.00 43.70 3.51
2696 3544 1.340889 GCCAATCAAACAAGGCTGTGA 59.659 47.619 0.00 0.00 43.70 3.58
2697 3545 1.787012 GCCAATCAAACAAGGCTGTG 58.213 50.000 0.00 0.00 43.70 3.66
2705 3553 8.899427 TTTGAATTGAATAAGCCAATCAAACA 57.101 26.923 0.00 0.00 36.72 2.83
2733 3581 6.127952 ACAACGGTAACACACTTGTTTATGTT 60.128 34.615 0.00 0.00 43.89 2.71
2891 3744 5.381757 TGTAGGTTAAATGGAGTGCTTTGT 58.618 37.500 0.00 0.00 0.00 2.83
2893 3746 6.969993 TTTGTAGGTTAAATGGAGTGCTTT 57.030 33.333 0.00 0.00 0.00 3.51
2907 3760 5.009310 GGGACGTCTTTGAATTTTGTAGGTT 59.991 40.000 16.46 0.00 0.00 3.50
3071 3924 8.311836 TCTACTATCAAAAAGTAGGAACCAGTG 58.688 37.037 9.68 0.00 44.33 3.66
3072 3925 8.431910 TCTACTATCAAAAAGTAGGAACCAGT 57.568 34.615 9.68 0.00 44.33 4.00
3134 3987 3.874392 GCTTGTTAGCCATGAACCATT 57.126 42.857 0.00 0.00 41.74 3.16
3205 4058 2.362503 ATCGGGAGCCAGTCGTCA 60.363 61.111 0.00 0.00 0.00 4.35
3362 4223 4.021925 GGAGGCGAGGCAACAGGT 62.022 66.667 0.00 0.00 41.41 4.00
3363 4224 3.710722 AGGAGGCGAGGCAACAGG 61.711 66.667 0.00 0.00 41.41 4.00
3379 4240 8.044309 TCCTAGACTAGACTATATTAGCAGCAG 58.956 40.741 11.27 0.00 0.00 4.24
3398 4259 9.578439 ACAAACAAACGTTATATACTCCTAGAC 57.422 33.333 0.00 0.00 0.00 2.59
3431 4402 1.678970 GGGCCCCTGTGCAAGTAAG 60.679 63.158 12.23 0.00 0.00 2.34
3434 4405 4.290622 CAGGGCCCCTGTGCAAGT 62.291 66.667 22.48 0.00 45.82 3.16
3630 4601 0.032267 TGTACACGATGTTCACGCCA 59.968 50.000 0.00 0.00 0.00 5.69
4177 5463 1.378382 CCATCATGTTGGCGGTGGA 60.378 57.895 9.85 0.00 0.00 4.02
4242 5528 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4243 5529 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4246 5532 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4247 5533 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4248 5534 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4249 5535 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4250 5536 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4251 5537 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4253 5539 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4254 5540 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4255 5541 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4256 5542 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4257 5543 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4258 5544 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4259 5545 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4260 5546 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4261 5547 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
4262 5548 2.477694 GGAATGTGTGTGTGTGTGTGTG 60.478 50.000 0.00 0.00 0.00 3.82
4263 5549 1.742831 GGAATGTGTGTGTGTGTGTGT 59.257 47.619 0.00 0.00 0.00 3.72
4264 5550 1.742268 TGGAATGTGTGTGTGTGTGTG 59.258 47.619 0.00 0.00 0.00 3.82
4266 5552 2.163211 TGTTGGAATGTGTGTGTGTGTG 59.837 45.455 0.00 0.00 0.00 3.82
4268 5554 3.500558 TTGTTGGAATGTGTGTGTGTG 57.499 42.857 0.00 0.00 0.00 3.82
4269 5555 4.402155 AGATTTGTTGGAATGTGTGTGTGT 59.598 37.500 0.00 0.00 0.00 3.72
4273 5559 6.183360 GCAAAAAGATTTGTTGGAATGTGTGT 60.183 34.615 3.55 0.00 46.19 3.72
4274 5560 6.037391 AGCAAAAAGATTTGTTGGAATGTGTG 59.963 34.615 3.55 0.00 46.19 3.82
4275 5561 6.114767 AGCAAAAAGATTTGTTGGAATGTGT 58.885 32.000 3.55 0.00 46.19 3.72
4324 5610 2.158856 TCAGGATTCAGGCATGTGCTAG 60.159 50.000 4.84 0.00 41.70 3.42
4326 5612 0.622136 TCAGGATTCAGGCATGTGCT 59.378 50.000 4.84 0.00 41.70 4.40
4327 5613 1.607628 GATCAGGATTCAGGCATGTGC 59.392 52.381 0.00 0.00 41.14 4.57
4329 5615 1.764723 TCGATCAGGATTCAGGCATGT 59.235 47.619 0.00 0.00 0.00 3.21
4330 5616 2.141517 GTCGATCAGGATTCAGGCATG 58.858 52.381 0.00 0.00 0.00 4.06
4410 5854 2.708325 AGGGAACTTGAGCTTCTTCACT 59.292 45.455 0.00 0.00 37.44 3.41
4487 5931 1.817357 CTTTTCGGGTGGTAAGGGAC 58.183 55.000 0.00 0.00 0.00 4.46
4551 6019 1.654137 GGTGAACGCTGCAAACGTG 60.654 57.895 14.43 0.00 44.30 4.49
4681 6149 2.290071 ACCGATTCCCGTGATCAACTTT 60.290 45.455 0.00 0.00 36.31 2.66
4682 6150 1.278127 ACCGATTCCCGTGATCAACTT 59.722 47.619 0.00 0.00 36.31 2.66
4693 6161 5.676331 GCAACTCTGAATTTTACCGATTCCC 60.676 44.000 0.00 0.00 33.56 3.97
4821 6292 8.642432 GGCATATATAACTAGAGATACATGGCA 58.358 37.037 19.12 0.00 35.86 4.92
4930 6407 1.209019 GACAGGATCATGAGGCACACT 59.791 52.381 15.42 0.00 0.00 3.55
4939 6416 0.863799 CGATTGGCGACAGGATCATG 59.136 55.000 5.68 5.68 44.54 3.07
5031 6508 2.682856 TCTTGCAGTTTTCACAGGACAC 59.317 45.455 0.00 0.00 0.00 3.67
5036 6513 5.624344 ATGATCTCTTGCAGTTTTCACAG 57.376 39.130 0.00 0.00 0.00 3.66
5067 6545 1.546476 AGCAAGAGAGTTCGTGGTAGG 59.454 52.381 0.00 0.00 40.81 3.18
5072 6550 1.220529 TGCAAGCAAGAGAGTTCGTG 58.779 50.000 0.00 0.00 36.11 4.35
5075 6553 2.880890 TCCTTTGCAAGCAAGAGAGTTC 59.119 45.455 7.60 0.00 37.24 3.01
5086 6564 5.874261 TGTTCCTTTCTTTTTCCTTTGCAAG 59.126 36.000 0.00 0.00 0.00 4.01
5087 6565 5.799213 TGTTCCTTTCTTTTTCCTTTGCAA 58.201 33.333 0.00 0.00 0.00 4.08
5089 6567 6.048509 TGATGTTCCTTTCTTTTTCCTTTGC 58.951 36.000 0.00 0.00 0.00 3.68
5090 6568 9.415544 CTATGATGTTCCTTTCTTTTTCCTTTG 57.584 33.333 0.00 0.00 0.00 2.77
5091 6569 9.147732 ACTATGATGTTCCTTTCTTTTTCCTTT 57.852 29.630 0.00 0.00 0.00 3.11
5094 6572 8.459635 GGTACTATGATGTTCCTTTCTTTTTCC 58.540 37.037 0.00 0.00 0.00 3.13
5124 6610 3.764237 AACGTCCCATCTGTAACAGTT 57.236 42.857 0.00 0.00 32.61 3.16
5143 6636 8.985315 AATTTTCTCTGACCATATGCATCTAA 57.015 30.769 0.19 0.00 0.00 2.10
5167 6660 5.129485 TCCCATTTGCTTTGACTAAACCAAA 59.871 36.000 0.00 0.00 36.39 3.28
5187 6680 4.474394 TGATTAACCACAAACACATCCCA 58.526 39.130 0.00 0.00 0.00 4.37
5191 6684 6.403866 ACACATGATTAACCACAAACACAT 57.596 33.333 0.00 0.00 0.00 3.21
5248 6743 6.380095 AGAGATTGTCGATTCTACAGTACC 57.620 41.667 0.00 0.00 0.00 3.34
5249 6744 8.690680 AAAAGAGATTGTCGATTCTACAGTAC 57.309 34.615 0.00 0.00 0.00 2.73
5258 6753 5.702670 TGAGCAGAAAAAGAGATTGTCGATT 59.297 36.000 0.00 0.00 0.00 3.34
5270 6765 4.210537 CCATGCAAGTTTGAGCAGAAAAAG 59.789 41.667 0.00 0.00 44.94 2.27
5319 6814 5.651387 AGAACAGTCGATTCTCTCATCAA 57.349 39.130 0.00 0.00 30.33 2.57
5320 6815 5.651387 AAGAACAGTCGATTCTCTCATCA 57.349 39.130 0.44 0.00 35.31 3.07
5360 6855 0.108774 GAAGGCAGTAGCATACCCCC 59.891 60.000 0.00 0.00 44.47 5.40
5361 6856 0.108774 GGAAGGCAGTAGCATACCCC 59.891 60.000 0.00 0.00 44.47 4.95
5402 6897 9.250246 CCATCTGTTTCTTTTAATTACCCCTAA 57.750 33.333 0.00 0.00 0.00 2.69
5403 6898 8.395605 ACCATCTGTTTCTTTTAATTACCCCTA 58.604 33.333 0.00 0.00 0.00 3.53
5404 6899 7.246027 ACCATCTGTTTCTTTTAATTACCCCT 58.754 34.615 0.00 0.00 0.00 4.79
5405 6900 7.476540 ACCATCTGTTTCTTTTAATTACCCC 57.523 36.000 0.00 0.00 0.00 4.95
5406 6901 8.364894 ACAACCATCTGTTTCTTTTAATTACCC 58.635 33.333 0.00 0.00 34.00 3.69
5407 6902 9.758651 AACAACCATCTGTTTCTTTTAATTACC 57.241 29.630 0.00 0.00 36.05 2.85
5414 6909 8.966868 TCTCTTAAACAACCATCTGTTTCTTTT 58.033 29.630 5.06 0.00 44.32 2.27
5415 6910 8.519799 TCTCTTAAACAACCATCTGTTTCTTT 57.480 30.769 5.06 0.00 44.32 2.52
5416 6911 8.406297 GTTCTCTTAAACAACCATCTGTTTCTT 58.594 33.333 5.06 0.00 44.32 2.52
5417 6912 7.556275 TGTTCTCTTAAACAACCATCTGTTTCT 59.444 33.333 5.06 0.00 44.32 2.52
5418 6913 7.703328 TGTTCTCTTAAACAACCATCTGTTTC 58.297 34.615 5.06 0.00 44.32 2.78
5420 6915 7.556275 TCTTGTTCTCTTAAACAACCATCTGTT 59.444 33.333 0.00 0.00 42.58 3.16
5421 6916 7.012421 GTCTTGTTCTCTTAAACAACCATCTGT 59.988 37.037 0.00 0.00 42.58 3.41
5422 6917 7.012327 TGTCTTGTTCTCTTAAACAACCATCTG 59.988 37.037 0.00 0.00 42.58 2.90
5423 6918 7.054124 TGTCTTGTTCTCTTAAACAACCATCT 58.946 34.615 0.00 0.00 42.58 2.90
5424 6919 7.259290 TGTCTTGTTCTCTTAAACAACCATC 57.741 36.000 0.00 0.00 42.58 3.51
5425 6920 7.122055 TGTTGTCTTGTTCTCTTAAACAACCAT 59.878 33.333 11.58 0.00 42.58 3.55
5426 6921 6.431543 TGTTGTCTTGTTCTCTTAAACAACCA 59.568 34.615 11.58 0.00 42.58 3.67
5431 6926 7.309920 TGGTTTGTTGTCTTGTTCTCTTAAAC 58.690 34.615 0.00 0.00 0.00 2.01
5486 6981 8.227119 CACGTGTTATGACTTATGAATCAACAA 58.773 33.333 7.58 0.00 0.00 2.83
5487 6982 7.600752 TCACGTGTTATGACTTATGAATCAACA 59.399 33.333 16.51 0.00 0.00 3.33
5488 6983 7.959733 TCACGTGTTATGACTTATGAATCAAC 58.040 34.615 16.51 0.00 0.00 3.18
5489 6984 8.541133 TTCACGTGTTATGACTTATGAATCAA 57.459 30.769 16.51 0.00 0.00 2.57
5490 6985 7.277760 CCTTCACGTGTTATGACTTATGAATCA 59.722 37.037 16.51 0.00 0.00 2.57
5491 6986 7.277981 ACCTTCACGTGTTATGACTTATGAATC 59.722 37.037 16.51 0.00 0.00 2.52
5492 6987 7.064609 CACCTTCACGTGTTATGACTTATGAAT 59.935 37.037 16.51 0.00 0.00 2.57
5493 6988 6.367695 CACCTTCACGTGTTATGACTTATGAA 59.632 38.462 16.51 0.00 0.00 2.57
5494 6989 5.867174 CACCTTCACGTGTTATGACTTATGA 59.133 40.000 16.51 0.00 0.00 2.15
5495 6990 5.867174 TCACCTTCACGTGTTATGACTTATG 59.133 40.000 16.51 2.31 35.18 1.90
5497 6992 5.456548 TCACCTTCACGTGTTATGACTTA 57.543 39.130 16.51 0.00 35.18 2.24
5498 6993 4.330944 TCACCTTCACGTGTTATGACTT 57.669 40.909 16.51 0.00 35.18 3.01
5499 6994 4.537135 ATCACCTTCACGTGTTATGACT 57.463 40.909 16.51 3.95 35.18 3.41
5500 6995 5.165676 TGTATCACCTTCACGTGTTATGAC 58.834 41.667 16.51 5.66 35.18 3.06
5508 9024 2.831685 TGCTTGTATCACCTTCACGT 57.168 45.000 0.00 0.00 0.00 4.49
5525 9041 1.135689 GTTGGATGTGAACCGTCATGC 60.136 52.381 0.00 0.00 35.80 4.06
5526 9042 1.468520 GGTTGGATGTGAACCGTCATG 59.531 52.381 0.00 0.00 35.80 3.07
5527 9043 1.351017 AGGTTGGATGTGAACCGTCAT 59.649 47.619 0.00 0.00 46.49 3.06
5528 9044 0.762418 AGGTTGGATGTGAACCGTCA 59.238 50.000 0.00 0.00 46.49 4.35
5557 9073 6.930722 CCTCCTTTTTAATTGTGTGCATTCTT 59.069 34.615 0.00 0.00 0.00 2.52
5560 9076 6.223120 GTCCTCCTTTTTAATTGTGTGCATT 58.777 36.000 0.00 0.00 0.00 3.56
5594 9110 4.392138 CGCTTTCGTCCTTCCTTTCTTTAT 59.608 41.667 0.00 0.00 0.00 1.40
5595 9111 3.744426 CGCTTTCGTCCTTCCTTTCTTTA 59.256 43.478 0.00 0.00 0.00 1.85
5598 9114 1.797025 CGCTTTCGTCCTTCCTTTCT 58.203 50.000 0.00 0.00 0.00 2.52
5611 9127 0.793861 TGTCGTGGCATTACGCTTTC 59.206 50.000 0.00 0.00 43.40 2.62
5617 9133 4.026804 CGATTACTCTTGTCGTGGCATTAC 60.027 45.833 0.00 0.00 0.00 1.89
5642 11002 2.859165 TCGGCTCTTCACCTTCATTT 57.141 45.000 0.00 0.00 0.00 2.32
5663 11023 3.059188 ACGCATAACAGTGTAGTGTTTGC 60.059 43.478 18.84 18.84 41.06 3.68
5720 11080 0.321671 GCAGTAGAGGAGCACCAACA 59.678 55.000 2.07 0.00 38.94 3.33
5726 11086 2.418910 GCCGAGCAGTAGAGGAGCA 61.419 63.158 0.00 0.00 0.00 4.26
5727 11087 2.415426 GCCGAGCAGTAGAGGAGC 59.585 66.667 0.00 0.00 0.00 4.70
5803 11163 2.505650 TTGGATTGGAAGGATTGCGA 57.494 45.000 0.00 0.00 40.42 5.10
5804 11164 2.954318 AGATTGGATTGGAAGGATTGCG 59.046 45.455 0.00 0.00 40.42 4.85
5805 11165 3.956199 TGAGATTGGATTGGAAGGATTGC 59.044 43.478 0.00 0.00 36.73 3.56
5807 11167 5.193325 AGACTGAGATTGGATTGGAAGGATT 59.807 40.000 0.00 0.00 0.00 3.01
5822 11182 3.387962 TCAATAGCCCCAAGACTGAGAT 58.612 45.455 0.00 0.00 0.00 2.75
5860 11220 1.882623 CGGGCTTTTTGCTTCTCTCTT 59.117 47.619 0.00 0.00 42.39 2.85
5865 11225 1.338020 CTTCACGGGCTTTTTGCTTCT 59.662 47.619 0.00 0.00 42.39 2.85
5866 11226 1.602920 CCTTCACGGGCTTTTTGCTTC 60.603 52.381 0.00 0.00 42.39 3.86
5867 11227 0.389025 CCTTCACGGGCTTTTTGCTT 59.611 50.000 0.00 0.00 42.39 3.91
5870 11230 2.545742 CCTTTCCTTCACGGGCTTTTTG 60.546 50.000 0.00 0.00 0.00 2.44
5872 11232 1.328279 CCTTTCCTTCACGGGCTTTT 58.672 50.000 0.00 0.00 0.00 2.27
5878 11241 3.057526 GGATTGAAACCTTTCCTTCACGG 60.058 47.826 0.00 0.00 36.36 4.94
5896 11259 2.023501 ACTCCAGCCTAGTCTGAGGATT 60.024 50.000 1.43 0.00 39.15 3.01
5907 11270 1.311403 CCCCTCAGACTCCAGCCTA 59.689 63.158 0.00 0.00 0.00 3.93
5968 11331 5.046304 ACCGAGGATCAAATCTTCTCTTCAA 60.046 40.000 0.00 0.00 33.63 2.69
5982 11345 2.466846 TGGAAGATTGACCGAGGATCA 58.533 47.619 0.00 0.00 33.17 2.92
5990 11353 1.546029 GGCCAAGTTGGAAGATTGACC 59.454 52.381 26.52 10.45 40.96 4.02
5992 11355 1.533625 CGGCCAAGTTGGAAGATTGA 58.466 50.000 26.52 0.00 40.96 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.