Multiple sequence alignment - TraesCS7B01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G212500 chr7B 100.000 5643 0 0 1 5643 388600653 388595011 0.000000e+00 10421
1 TraesCS7B01G212500 chr7B 87.597 387 48 0 3022 3408 388954610 388954224 3.100000e-122 449
2 TraesCS7B01G212500 chr7B 83.960 399 62 2 3509 3906 388954220 388953823 1.150000e-101 381
3 TraesCS7B01G212500 chr7B 86.957 161 21 0 2668 2828 388954878 388954718 1.250000e-41 182
4 TraesCS7B01G212500 chr7B 74.098 471 83 27 4020 4468 388953684 388953231 2.100000e-34 158
5 TraesCS7B01G212500 chr7B 87.023 131 17 0 2698 2828 63170254 63170384 1.270000e-31 148
6 TraesCS7B01G212500 chr7D 90.790 4050 165 77 1713 5643 392265934 392261974 0.000000e+00 5221
7 TraesCS7B01G212500 chr7D 89.273 1445 68 28 293 1692 392267397 392265995 0.000000e+00 1729
8 TraesCS7B01G212500 chr7D 87.597 387 48 0 3022 3408 392746506 392746120 3.100000e-122 449
9 TraesCS7B01G212500 chr7D 84.211 399 61 2 3509 3906 392746116 392745719 2.470000e-103 387
10 TraesCS7B01G212500 chr7D 82.105 285 51 0 3620 3904 104748591 104748307 1.570000e-60 244
11 TraesCS7B01G212500 chr7D 87.578 161 20 0 2668 2828 392746752 392746592 2.680000e-43 187
12 TraesCS7B01G212500 chr7D 74.034 466 86 22 4020 4470 392745623 392745178 2.100000e-34 158
13 TraesCS7B01G212500 chr7A 89.694 3299 178 54 265 3480 443967613 443964394 0.000000e+00 4060
14 TraesCS7B01G212500 chr7A 93.864 1043 36 9 3937 4955 443963751 443962713 0.000000e+00 1546
15 TraesCS7B01G212500 chr7A 97.403 462 12 0 3483 3944 443964363 443963902 0.000000e+00 787
16 TraesCS7B01G212500 chr7A 88.889 387 43 0 3022 3408 444793323 444792937 1.420000e-130 477
17 TraesCS7B01G212500 chr7A 93.863 277 7 4 5373 5643 443962333 443962061 5.260000e-110 409
18 TraesCS7B01G212500 chr7A 84.712 399 59 2 3509 3906 444792933 444792536 1.140000e-106 398
19 TraesCS7B01G212500 chr7A 87.578 161 20 0 2668 2828 444793566 444793406 2.680000e-43 187
20 TraesCS7B01G212500 chr7A 78.339 277 39 14 4204 4470 444792227 444791962 5.850000e-35 159
21 TraesCS7B01G212500 chr2B 84.856 383 58 0 3023 3405 784718509 784718127 2.470000e-103 387
22 TraesCS7B01G212500 chr2B 83.210 405 60 8 3506 3906 784717925 784717525 1.160000e-96 364
23 TraesCS7B01G212500 chr2B 82.888 187 27 5 2645 2828 784718798 784718614 4.520000e-36 163
24 TraesCS7B01G212500 chr2D 83.416 404 61 6 3506 3906 648636161 648635761 2.480000e-98 370
25 TraesCS7B01G212500 chr2D 80.925 173 29 4 2658 2828 648637010 648636840 3.550000e-27 134
26 TraesCS7B01G212500 chr1B 85.507 345 48 2 3062 3405 59634637 59634980 5.380000e-95 359
27 TraesCS7B01G212500 chr2A 82.963 405 59 10 3506 3905 775748271 775748670 1.930000e-94 357
28 TraesCS7B01G212500 chr2A 80.925 173 29 4 2658 2828 775747310 775747480 3.550000e-27 134
29 TraesCS7B01G212500 chr1D 84.971 346 48 4 3062 3405 40000466 40000123 1.160000e-91 348
30 TraesCS7B01G212500 chr1A 84.682 346 49 4 3062 3405 39636875 39636532 5.410000e-90 342
31 TraesCS7B01G212500 chr4B 86.735 98 10 3 1 95 85744267 85744364 7.730000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G212500 chr7B 388595011 388600653 5642 True 10421.000000 10421 100.000000 1 5643 1 chr7B.!!$R1 5642
1 TraesCS7B01G212500 chr7B 388953231 388954878 1647 True 292.500000 449 83.153000 2668 4468 4 chr7B.!!$R2 1800
2 TraesCS7B01G212500 chr7D 392261974 392267397 5423 True 3475.000000 5221 90.031500 293 5643 2 chr7D.!!$R2 5350
3 TraesCS7B01G212500 chr7D 392745178 392746752 1574 True 295.250000 449 83.355000 2668 4470 4 chr7D.!!$R3 1802
4 TraesCS7B01G212500 chr7A 443962061 443967613 5552 True 1700.500000 4060 93.706000 265 5643 4 chr7A.!!$R1 5378
5 TraesCS7B01G212500 chr7A 444791962 444793566 1604 True 305.250000 477 84.879500 2668 4470 4 chr7A.!!$R2 1802
6 TraesCS7B01G212500 chr2B 784717525 784718798 1273 True 304.666667 387 83.651333 2645 3906 3 chr2B.!!$R1 1261
7 TraesCS7B01G212500 chr2D 648635761 648637010 1249 True 252.000000 370 82.170500 2658 3906 2 chr2D.!!$R1 1248
8 TraesCS7B01G212500 chr2A 775747310 775748670 1360 False 245.500000 357 81.944000 2658 3905 2 chr2A.!!$F1 1247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.107643 GGCTGGGGATGCTCTAAGTC 59.892 60.0 0.00 0.0 0.00 3.01 F
233 234 0.107654 AAGTGGGCTGCCGACTATTC 60.108 55.0 32.18 9.2 41.61 1.75 F
238 239 0.108138 GGCTGCCGACTATTCACAGT 60.108 55.0 1.35 0.0 31.15 3.55 F
1276 1334 0.108329 GGGGAAGCGAAATCGACAGA 60.108 55.0 7.06 0.0 43.02 3.41 F
1920 2055 0.249073 ATAGCTCGCACTTGCCTACG 60.249 55.0 0.00 0.0 37.91 3.51 F
2963 3144 0.521735 GGGCAGTTTCCAAAGCTACG 59.478 55.0 0.00 0.0 0.00 3.51 F
2964 3145 0.521735 GGCAGTTTCCAAAGCTACGG 59.478 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1342 0.102120 TGTCCTTTTTGCGCCAACAG 59.898 50.000 4.18 2.02 0.00 3.16 R
1804 1935 0.108520 GGACCATACGACGGAAGCAA 60.109 55.000 0.00 0.00 0.00 3.91 R
1811 1942 0.245539 ACAAGGTGGACCATACGACG 59.754 55.000 0.00 0.00 38.89 5.12 R
2953 3134 1.234821 TTGCAAGTCCGTAGCTTTGG 58.765 50.000 0.00 0.00 0.00 3.28 R
3634 4028 0.543410 TGTGGCCGGAGTAGGAGAAA 60.543 55.000 5.05 0.00 0.00 2.52 R
3955 4349 1.137086 CCTAGCGCTGGTACAATGTCT 59.863 52.381 22.90 0.00 38.70 3.41 R
4795 5401 1.279846 GGACCCCTTCACGATTTACCA 59.720 52.381 0.00 0.00 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.482326 GGAACCAATTCGCCTCAGG 58.518 57.895 0.00 0.00 35.48 3.86
21 22 1.657751 GGAACCAATTCGCCTCAGGC 61.658 60.000 5.22 5.22 46.75 4.85
59 60 2.996734 CCCACAGGCGGCCATTTT 60.997 61.111 23.09 0.00 0.00 1.82
60 61 1.680651 CCCACAGGCGGCCATTTTA 60.681 57.895 23.09 0.00 0.00 1.52
61 62 1.510844 CCACAGGCGGCCATTTTAC 59.489 57.895 23.09 0.00 0.00 2.01
62 63 1.136565 CACAGGCGGCCATTTTACG 59.863 57.895 23.09 2.68 0.00 3.18
67 68 4.546296 CGGCCATTTTACGCGCCC 62.546 66.667 5.73 0.00 38.19 6.13
68 69 4.201679 GGCCATTTTACGCGCCCC 62.202 66.667 5.73 0.00 35.23 5.80
69 70 3.138128 GCCATTTTACGCGCCCCT 61.138 61.111 5.73 0.00 0.00 4.79
70 71 1.820481 GCCATTTTACGCGCCCCTA 60.820 57.895 5.73 0.00 0.00 3.53
71 72 1.378124 GCCATTTTACGCGCCCCTAA 61.378 55.000 5.73 0.00 0.00 2.69
72 73 0.661020 CCATTTTACGCGCCCCTAAG 59.339 55.000 5.73 0.00 0.00 2.18
73 74 0.661020 CATTTTACGCGCCCCTAAGG 59.339 55.000 5.73 0.00 39.47 2.69
92 93 4.431131 CCAACGGCTGGGGATGCT 62.431 66.667 0.00 0.00 42.17 3.79
93 94 2.825836 CAACGGCTGGGGATGCTC 60.826 66.667 0.00 0.00 0.00 4.26
94 95 3.011517 AACGGCTGGGGATGCTCT 61.012 61.111 0.00 0.00 0.00 4.09
95 96 1.689233 AACGGCTGGGGATGCTCTA 60.689 57.895 0.00 0.00 0.00 2.43
96 97 1.271840 AACGGCTGGGGATGCTCTAA 61.272 55.000 0.00 0.00 0.00 2.10
97 98 1.070445 CGGCTGGGGATGCTCTAAG 59.930 63.158 0.00 0.00 0.00 2.18
98 99 1.690219 CGGCTGGGGATGCTCTAAGT 61.690 60.000 0.00 0.00 0.00 2.24
99 100 0.107643 GGCTGGGGATGCTCTAAGTC 59.892 60.000 0.00 0.00 0.00 3.01
100 101 0.107643 GCTGGGGATGCTCTAAGTCC 59.892 60.000 0.00 0.00 0.00 3.85
101 102 1.500474 CTGGGGATGCTCTAAGTCCA 58.500 55.000 0.00 0.00 33.62 4.02
102 103 2.053244 CTGGGGATGCTCTAAGTCCAT 58.947 52.381 0.00 0.00 33.62 3.41
103 104 2.441001 CTGGGGATGCTCTAAGTCCATT 59.559 50.000 0.00 0.00 33.62 3.16
104 105 2.173356 TGGGGATGCTCTAAGTCCATTG 59.827 50.000 0.00 0.00 33.62 2.82
105 106 2.225467 GGGATGCTCTAAGTCCATTGC 58.775 52.381 0.00 0.00 33.62 3.56
106 107 2.225467 GGATGCTCTAAGTCCATTGCC 58.775 52.381 0.00 0.00 32.23 4.52
107 108 1.869767 GATGCTCTAAGTCCATTGCCG 59.130 52.381 0.00 0.00 0.00 5.69
108 109 0.901827 TGCTCTAAGTCCATTGCCGA 59.098 50.000 0.00 0.00 0.00 5.54
109 110 1.486310 TGCTCTAAGTCCATTGCCGAT 59.514 47.619 0.00 0.00 0.00 4.18
110 111 1.869767 GCTCTAAGTCCATTGCCGATG 59.130 52.381 0.00 0.00 35.42 3.84
111 112 1.869767 CTCTAAGTCCATTGCCGATGC 59.130 52.381 0.00 0.00 34.25 3.91
112 113 1.486310 TCTAAGTCCATTGCCGATGCT 59.514 47.619 0.00 0.00 38.71 3.79
113 114 2.698274 TCTAAGTCCATTGCCGATGCTA 59.302 45.455 0.00 0.00 38.71 3.49
114 115 1.668419 AAGTCCATTGCCGATGCTAC 58.332 50.000 0.00 0.00 38.71 3.58
115 116 0.179045 AGTCCATTGCCGATGCTACC 60.179 55.000 0.00 0.00 38.71 3.18
116 117 0.179045 GTCCATTGCCGATGCTACCT 60.179 55.000 0.00 0.00 38.71 3.08
117 118 0.179048 TCCATTGCCGATGCTACCTG 60.179 55.000 0.00 0.00 38.71 4.00
118 119 0.179048 CCATTGCCGATGCTACCTGA 60.179 55.000 0.00 0.00 38.71 3.86
119 120 1.667236 CATTGCCGATGCTACCTGAA 58.333 50.000 0.00 0.00 38.71 3.02
120 121 2.016318 CATTGCCGATGCTACCTGAAA 58.984 47.619 0.00 0.00 38.71 2.69
121 122 2.418368 TTGCCGATGCTACCTGAAAT 57.582 45.000 0.00 0.00 38.71 2.17
122 123 1.953559 TGCCGATGCTACCTGAAATC 58.046 50.000 0.00 0.00 38.71 2.17
123 124 1.486310 TGCCGATGCTACCTGAAATCT 59.514 47.619 0.00 0.00 38.71 2.40
124 125 2.092968 TGCCGATGCTACCTGAAATCTT 60.093 45.455 0.00 0.00 38.71 2.40
125 126 2.945668 GCCGATGCTACCTGAAATCTTT 59.054 45.455 0.00 0.00 33.53 2.52
126 127 3.378427 GCCGATGCTACCTGAAATCTTTT 59.622 43.478 0.00 0.00 33.53 2.27
127 128 4.142381 GCCGATGCTACCTGAAATCTTTTT 60.142 41.667 0.00 0.00 33.53 1.94
151 152 2.386661 CACCGATGCTACCTGAAACT 57.613 50.000 0.00 0.00 0.00 2.66
152 153 2.699954 CACCGATGCTACCTGAAACTT 58.300 47.619 0.00 0.00 0.00 2.66
153 154 3.074412 CACCGATGCTACCTGAAACTTT 58.926 45.455 0.00 0.00 0.00 2.66
154 155 3.074412 ACCGATGCTACCTGAAACTTTG 58.926 45.455 0.00 0.00 0.00 2.77
155 156 2.159517 CCGATGCTACCTGAAACTTTGC 60.160 50.000 0.00 0.00 0.00 3.68
156 157 2.483877 CGATGCTACCTGAAACTTTGCA 59.516 45.455 0.00 0.00 0.00 4.08
157 158 3.667960 CGATGCTACCTGAAACTTTGCAC 60.668 47.826 0.00 0.00 0.00 4.57
158 159 1.601903 TGCTACCTGAAACTTTGCACG 59.398 47.619 0.00 0.00 0.00 5.34
159 160 1.602377 GCTACCTGAAACTTTGCACGT 59.398 47.619 0.00 0.00 0.00 4.49
160 161 2.803956 GCTACCTGAAACTTTGCACGTA 59.196 45.455 0.00 0.00 0.00 3.57
161 162 3.120649 GCTACCTGAAACTTTGCACGTAG 60.121 47.826 0.00 3.07 31.28 3.51
163 164 4.062677 ACCTGAAACTTTGCACGTAGTA 57.937 40.909 0.00 0.00 41.61 1.82
164 165 3.805971 ACCTGAAACTTTGCACGTAGTAC 59.194 43.478 0.00 0.00 41.61 2.73
165 166 4.056050 CCTGAAACTTTGCACGTAGTACT 58.944 43.478 0.00 0.00 41.61 2.73
166 167 5.221303 ACCTGAAACTTTGCACGTAGTACTA 60.221 40.000 0.00 0.00 41.61 1.82
167 168 5.118203 CCTGAAACTTTGCACGTAGTACTAC 59.882 44.000 21.06 21.06 41.61 2.73
188 189 8.496872 ACTACGAATGTTTGTTTTAAAATCGG 57.503 30.769 17.33 7.32 32.50 4.18
189 190 6.205337 ACGAATGTTTGTTTTAAAATCGGC 57.795 33.333 17.33 2.20 32.50 5.54
190 191 5.980715 ACGAATGTTTGTTTTAAAATCGGCT 59.019 32.000 17.33 1.06 32.50 5.52
191 192 6.477360 ACGAATGTTTGTTTTAAAATCGGCTT 59.523 30.769 17.33 4.43 32.50 4.35
192 193 7.001347 CGAATGTTTGTTTTAAAATCGGCTTC 58.999 34.615 3.52 3.70 0.00 3.86
193 194 6.779115 ATGTTTGTTTTAAAATCGGCTTCC 57.221 33.333 3.52 0.00 0.00 3.46
194 195 5.661458 TGTTTGTTTTAAAATCGGCTTCCA 58.339 33.333 3.52 0.00 0.00 3.53
195 196 5.520649 TGTTTGTTTTAAAATCGGCTTCCAC 59.479 36.000 3.52 0.00 0.00 4.02
196 197 4.920640 TGTTTTAAAATCGGCTTCCACA 57.079 36.364 3.52 0.00 0.00 4.17
197 198 5.263968 TGTTTTAAAATCGGCTTCCACAA 57.736 34.783 3.52 0.00 0.00 3.33
198 199 5.848406 TGTTTTAAAATCGGCTTCCACAAT 58.152 33.333 3.52 0.00 0.00 2.71
199 200 6.982852 TGTTTTAAAATCGGCTTCCACAATA 58.017 32.000 3.52 0.00 0.00 1.90
200 201 7.607250 TGTTTTAAAATCGGCTTCCACAATAT 58.393 30.769 3.52 0.00 0.00 1.28
201 202 7.543868 TGTTTTAAAATCGGCTTCCACAATATG 59.456 33.333 3.52 0.00 0.00 1.78
202 203 3.715628 AAATCGGCTTCCACAATATGC 57.284 42.857 0.00 0.00 0.00 3.14
203 204 1.229428 ATCGGCTTCCACAATATGCG 58.771 50.000 0.00 0.00 0.00 4.73
204 205 0.107897 TCGGCTTCCACAATATGCGT 60.108 50.000 0.00 0.00 0.00 5.24
205 206 1.137282 TCGGCTTCCACAATATGCGTA 59.863 47.619 0.00 0.00 0.00 4.42
206 207 1.260561 CGGCTTCCACAATATGCGTAC 59.739 52.381 0.00 0.00 0.00 3.67
207 208 2.561569 GGCTTCCACAATATGCGTACT 58.438 47.619 0.00 0.00 0.00 2.73
208 209 2.287915 GGCTTCCACAATATGCGTACTG 59.712 50.000 0.00 0.00 0.00 2.74
209 210 2.287915 GCTTCCACAATATGCGTACTGG 59.712 50.000 0.00 0.19 0.00 4.00
210 211 3.792401 CTTCCACAATATGCGTACTGGA 58.208 45.455 0.00 2.52 0.00 3.86
211 212 3.897141 TCCACAATATGCGTACTGGAA 57.103 42.857 0.00 0.00 0.00 3.53
212 213 4.209307 TCCACAATATGCGTACTGGAAA 57.791 40.909 0.00 0.00 0.00 3.13
213 214 4.580868 TCCACAATATGCGTACTGGAAAA 58.419 39.130 0.00 0.00 0.00 2.29
214 215 5.004448 TCCACAATATGCGTACTGGAAAAA 58.996 37.500 0.00 0.00 0.00 1.94
228 229 3.443588 AAAAAGTGGGCTGCCGAC 58.556 55.556 24.21 24.21 32.29 4.79
229 230 1.152756 AAAAAGTGGGCTGCCGACT 60.153 52.632 27.85 27.85 44.26 4.18
230 231 0.109723 AAAAAGTGGGCTGCCGACTA 59.890 50.000 32.18 8.02 41.61 2.59
231 232 0.328258 AAAAGTGGGCTGCCGACTAT 59.672 50.000 32.18 22.36 41.61 2.12
232 233 0.328258 AAAGTGGGCTGCCGACTATT 59.672 50.000 32.18 24.09 41.61 1.73
233 234 0.107654 AAGTGGGCTGCCGACTATTC 60.108 55.000 32.18 9.20 41.61 1.75
234 235 1.220749 GTGGGCTGCCGACTATTCA 59.779 57.895 24.31 7.00 29.49 2.57
235 236 1.090052 GTGGGCTGCCGACTATTCAC 61.090 60.000 24.31 15.02 29.49 3.18
236 237 1.220749 GGGCTGCCGACTATTCACA 59.779 57.895 13.40 0.00 0.00 3.58
237 238 0.811616 GGGCTGCCGACTATTCACAG 60.812 60.000 13.40 0.00 0.00 3.66
238 239 0.108138 GGCTGCCGACTATTCACAGT 60.108 55.000 1.35 0.00 31.15 3.55
239 240 1.281899 GCTGCCGACTATTCACAGTC 58.718 55.000 0.00 0.00 41.33 3.51
240 241 1.404181 GCTGCCGACTATTCACAGTCA 60.404 52.381 4.33 0.00 44.34 3.41
241 242 2.930887 GCTGCCGACTATTCACAGTCAA 60.931 50.000 4.33 0.00 44.34 3.18
242 243 3.325870 CTGCCGACTATTCACAGTCAAA 58.674 45.455 4.33 0.00 44.34 2.69
243 244 3.064207 TGCCGACTATTCACAGTCAAAC 58.936 45.455 4.33 0.00 44.34 2.93
244 245 2.415512 GCCGACTATTCACAGTCAAACC 59.584 50.000 4.33 0.00 44.34 3.27
245 246 3.000727 CCGACTATTCACAGTCAAACCC 58.999 50.000 4.33 0.00 44.34 4.11
246 247 3.556213 CCGACTATTCACAGTCAAACCCA 60.556 47.826 4.33 0.00 44.34 4.51
247 248 4.253685 CGACTATTCACAGTCAAACCCAT 58.746 43.478 4.33 0.00 44.34 4.00
248 249 5.416083 CGACTATTCACAGTCAAACCCATA 58.584 41.667 4.33 0.00 44.34 2.74
249 250 5.872617 CGACTATTCACAGTCAAACCCATAA 59.127 40.000 4.33 0.00 44.34 1.90
250 251 6.370442 CGACTATTCACAGTCAAACCCATAAA 59.630 38.462 4.33 0.00 44.34 1.40
251 252 7.413000 CGACTATTCACAGTCAAACCCATAAAG 60.413 40.741 4.33 0.00 44.34 1.85
252 253 7.231467 ACTATTCACAGTCAAACCCATAAAGT 58.769 34.615 0.00 0.00 0.00 2.66
253 254 5.766150 TTCACAGTCAAACCCATAAAGTG 57.234 39.130 0.00 0.00 0.00 3.16
254 255 4.787551 TCACAGTCAAACCCATAAAGTGT 58.212 39.130 0.00 0.00 0.00 3.55
255 256 5.197451 TCACAGTCAAACCCATAAAGTGTT 58.803 37.500 0.00 0.00 0.00 3.32
256 257 5.298276 TCACAGTCAAACCCATAAAGTGTTC 59.702 40.000 0.00 0.00 0.00 3.18
257 258 4.274950 ACAGTCAAACCCATAAAGTGTTCG 59.725 41.667 0.00 0.00 0.00 3.95
258 259 3.252458 AGTCAAACCCATAAAGTGTTCGC 59.748 43.478 0.00 0.00 0.00 4.70
259 260 2.554893 TCAAACCCATAAAGTGTTCGCC 59.445 45.455 0.00 0.00 0.00 5.54
260 261 2.279935 AACCCATAAAGTGTTCGCCA 57.720 45.000 0.00 0.00 0.00 5.69
261 262 2.279935 ACCCATAAAGTGTTCGCCAA 57.720 45.000 0.00 0.00 0.00 4.52
262 263 2.588620 ACCCATAAAGTGTTCGCCAAA 58.411 42.857 0.00 0.00 0.00 3.28
263 264 2.959707 ACCCATAAAGTGTTCGCCAAAA 59.040 40.909 0.00 0.00 0.00 2.44
379 381 0.664761 CTTGGTGTGGCTGTCAACAG 59.335 55.000 5.77 5.77 46.40 3.16
580 591 2.202623 ATCGCAACCGTCGAGAGC 60.203 61.111 0.00 0.00 39.47 4.09
636 647 0.249155 GGAGGAACGAACGACACACA 60.249 55.000 0.14 0.00 0.00 3.72
729 745 3.009695 TCCACCCAACGATATTCCAGTTT 59.990 43.478 0.00 0.00 0.00 2.66
784 809 6.492429 AGGAAAACAAACTCATAACTAACCCC 59.508 38.462 0.00 0.00 0.00 4.95
817 842 0.960861 TCCTCGATCGCTCACAGTGT 60.961 55.000 11.09 0.00 0.00 3.55
828 853 2.103538 ACAGTGTATACGGCGCCG 59.896 61.111 44.88 44.88 46.03 6.46
939 970 3.835395 TCTTTCTCTCCACCTTCTCCTTC 59.165 47.826 0.00 0.00 0.00 3.46
946 977 1.070134 CCACCTTCTCCTTCGTGTGAA 59.930 52.381 0.00 0.00 0.00 3.18
1059 1094 1.886422 AGGTCAAATCTCTCCCCCTC 58.114 55.000 0.00 0.00 0.00 4.30
1060 1095 0.840617 GGTCAAATCTCTCCCCCTCC 59.159 60.000 0.00 0.00 0.00 4.30
1061 1096 0.840617 GTCAAATCTCTCCCCCTCCC 59.159 60.000 0.00 0.00 0.00 4.30
1081 1117 2.105477 CCCTCCTCTCTCTCTCTCTCTG 59.895 59.091 0.00 0.00 0.00 3.35
1083 1119 3.432749 CCTCCTCTCTCTCTCTCTCTGTG 60.433 56.522 0.00 0.00 0.00 3.66
1085 1121 3.055167 TCCTCTCTCTCTCTCTCTGTGTG 60.055 52.174 0.00 0.00 0.00 3.82
1088 1124 3.072330 TCTCTCTCTCTCTCTGTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
1115 1157 7.119116 TGCGTCTGTATGTTATGATCTGTTTTT 59.881 33.333 0.00 0.00 0.00 1.94
1161 1207 4.155826 GTCCACGAAACAATCCATTCATCA 59.844 41.667 0.00 0.00 0.00 3.07
1232 1290 7.503521 AAGAGAGAGATGAAACAAAAAGGTC 57.496 36.000 0.00 0.00 0.00 3.85
1250 1308 2.439245 GGGGGTTGTGGAGTTCCC 59.561 66.667 0.00 0.00 39.22 3.97
1276 1334 0.108329 GGGGAAGCGAAATCGACAGA 60.108 55.000 7.06 0.00 43.02 3.41
1277 1335 1.281899 GGGAAGCGAAATCGACAGAG 58.718 55.000 7.06 0.00 43.02 3.35
1278 1336 0.647925 GGAAGCGAAATCGACAGAGC 59.352 55.000 7.06 0.00 43.02 4.09
1280 1338 0.741221 AAGCGAAATCGACAGAGCCC 60.741 55.000 7.06 0.00 43.02 5.19
1281 1339 2.174319 GCGAAATCGACAGAGCCCC 61.174 63.158 7.06 0.00 43.02 5.80
1282 1340 1.218047 CGAAATCGACAGAGCCCCA 59.782 57.895 0.00 0.00 43.02 4.96
1283 1341 1.084370 CGAAATCGACAGAGCCCCAC 61.084 60.000 0.00 0.00 43.02 4.61
1284 1342 0.744771 GAAATCGACAGAGCCCCACC 60.745 60.000 0.00 0.00 0.00 4.61
1285 1343 1.201429 AAATCGACAGAGCCCCACCT 61.201 55.000 0.00 0.00 0.00 4.00
1286 1344 1.903877 AATCGACAGAGCCCCACCTG 61.904 60.000 0.00 0.00 36.53 4.00
1287 1345 3.314331 CGACAGAGCCCCACCTGT 61.314 66.667 0.00 0.00 45.37 4.00
1288 1346 2.883828 CGACAGAGCCCCACCTGTT 61.884 63.158 0.00 0.00 43.02 3.16
1289 1347 1.302832 GACAGAGCCCCACCTGTTG 60.303 63.158 0.00 0.00 43.02 3.33
1290 1348 2.034687 CAGAGCCCCACCTGTTGG 59.965 66.667 0.00 0.00 46.47 3.77
1291 1349 3.971702 AGAGCCCCACCTGTTGGC 61.972 66.667 0.00 0.00 45.37 4.52
1330 1388 6.163476 AGGAAAACGCTGTTTTCTTTCTTTT 58.837 32.000 28.74 14.18 38.21 2.27
1331 1389 6.310467 AGGAAAACGCTGTTTTCTTTCTTTTC 59.690 34.615 28.74 17.97 38.21 2.29
1392 1454 6.405176 GGTTCATCTTCTTCATGTGAAATCCC 60.405 42.308 0.00 0.00 33.07 3.85
1400 1462 6.306199 TCTTCATGTGAAATCCCTTTCTTGA 58.694 36.000 0.00 0.00 41.18 3.02
1401 1463 6.432162 TCTTCATGTGAAATCCCTTTCTTGAG 59.568 38.462 0.00 0.00 41.18 3.02
1402 1464 5.012239 TCATGTGAAATCCCTTTCTTGAGG 58.988 41.667 0.00 0.00 41.18 3.86
1403 1465 9.188271 CTTCATGTGAAATCCCTTTCTTGAGGG 62.188 44.444 3.50 3.50 44.38 4.30
1717 1822 7.322699 ACGTTGCGTTTCTTGTTTCAAATATAG 59.677 33.333 0.00 0.00 36.35 1.31
1811 1942 4.396478 GTCTCCTATCCTTTTGTTGCTTCC 59.604 45.833 0.00 0.00 0.00 3.46
1852 1983 6.615088 TGTACTTGGACTAACGAGTATGAAC 58.385 40.000 0.00 0.00 39.03 3.18
1908 2043 1.134401 TCCAAGGCCAGAAATAGCTCG 60.134 52.381 5.01 0.00 0.00 5.03
1920 2055 0.249073 ATAGCTCGCACTTGCCTACG 60.249 55.000 0.00 0.00 37.91 3.51
1921 2056 1.310216 TAGCTCGCACTTGCCTACGA 61.310 55.000 0.00 0.00 37.91 3.43
1924 2059 1.144969 CTCGCACTTGCCTACGAAAA 58.855 50.000 0.00 0.00 37.91 2.29
2041 2179 7.882791 TGCATATCCATATCTCGGTGTTAATTT 59.117 33.333 0.00 0.00 0.00 1.82
2110 2251 7.458409 ACATCTCATGCAAGAACTTATTTGT 57.542 32.000 0.00 0.00 0.00 2.83
2199 2341 4.736473 TCTGGTAATATCCTGTCGATGGA 58.264 43.478 11.64 11.64 38.06 3.41
2210 2352 3.599343 CTGTCGATGGAGGATTTTCACA 58.401 45.455 0.00 0.00 0.00 3.58
2237 2379 9.158233 AGAAATTGTGAAAATGGATGCTTTATG 57.842 29.630 0.00 0.00 0.00 1.90
2271 2418 6.061441 TCCGTATTCCAGATATGCAAACATT 58.939 36.000 0.00 0.00 37.74 2.71
2272 2419 6.545666 TCCGTATTCCAGATATGCAAACATTT 59.454 34.615 0.00 0.00 37.74 2.32
2278 2425 9.768662 ATTCCAGATATGCAAACATTTTATTCC 57.231 29.630 0.00 0.00 37.74 3.01
2365 2512 1.399440 CGTGAGGTGGCATTGATTGAG 59.601 52.381 0.00 0.00 0.00 3.02
2366 2513 1.133790 GTGAGGTGGCATTGATTGAGC 59.866 52.381 0.00 0.00 0.00 4.26
2394 2541 8.790718 GCATCTGATGATATATTTGTCTTTGGT 58.209 33.333 21.30 0.00 0.00 3.67
2435 2588 0.591659 GTCAACTGCCCGGAAGAAAC 59.408 55.000 0.73 0.00 0.00 2.78
2526 2679 9.263538 CATCAAAAATGAAAGAAATGACAGGAA 57.736 29.630 0.00 0.00 0.00 3.36
2531 2684 9.750125 AAAATGAAAGAAATGACAGGAAGTTAC 57.250 29.630 0.00 0.00 0.00 2.50
2532 2685 8.463930 AATGAAAGAAATGACAGGAAGTTACA 57.536 30.769 0.00 0.00 0.00 2.41
2854 3035 1.586422 CTACCGCCTTGACATCCATG 58.414 55.000 0.00 0.00 0.00 3.66
2857 3038 1.430632 CGCCTTGACATCCATGCAC 59.569 57.895 0.00 0.00 0.00 4.57
2911 3092 2.097142 GCTGTGACTGGCAATCTGAATC 59.903 50.000 0.00 0.00 0.00 2.52
2912 3093 3.340928 CTGTGACTGGCAATCTGAATCA 58.659 45.455 0.00 0.00 0.00 2.57
2953 3134 2.281484 TCACAGCCGGGCAGTTTC 60.281 61.111 23.09 0.00 0.00 2.78
2963 3144 0.521735 GGGCAGTTTCCAAAGCTACG 59.478 55.000 0.00 0.00 0.00 3.51
2964 3145 0.521735 GGCAGTTTCCAAAGCTACGG 59.478 55.000 0.00 0.00 0.00 4.02
2982 3163 2.679837 ACGGACTTGCAATGACATGATC 59.320 45.455 0.00 0.00 0.00 2.92
3375 3563 2.160417 GCCAAACTTCAACTCCATCTCG 59.840 50.000 0.00 0.00 0.00 4.04
3616 4010 0.549469 AGGTGTTCGGTTTCTTGGGT 59.451 50.000 0.00 0.00 0.00 4.51
3946 4340 6.790285 TTTCGTTCAGTTACTTTGGATACC 57.210 37.500 0.00 0.00 0.00 2.73
3947 4341 5.733620 TCGTTCAGTTACTTTGGATACCT 57.266 39.130 0.00 0.00 0.00 3.08
3949 4343 7.230849 TCGTTCAGTTACTTTGGATACCTAA 57.769 36.000 0.00 0.00 0.00 2.69
3951 4345 8.149647 TCGTTCAGTTACTTTGGATACCTAAAA 58.850 33.333 0.00 0.00 0.00 1.52
3954 4348 9.856162 TTCAGTTACTTTGGATACCTAAAACTT 57.144 29.630 0.00 0.00 0.00 2.66
3969 4520 6.653740 ACCTAAAACTTAGACATTGTACCAGC 59.346 38.462 0.00 0.00 0.00 4.85
4041 4592 1.231221 TTTACGCGATGCCAGTGTTT 58.769 45.000 15.93 0.00 33.96 2.83
4361 4942 2.094286 ACATTCAGAGCTTCTCGTGAGG 60.094 50.000 0.00 0.00 35.36 3.86
4509 5101 6.326323 TCCAAAGCTTTTATCCCTTTCAAACT 59.674 34.615 9.53 0.00 0.00 2.66
4512 5104 9.710900 CAAAGCTTTTATCCCTTTCAAACTATT 57.289 29.630 9.53 0.00 0.00 1.73
4707 5313 7.998141 TGCGGTTTTTATTTTATTTTCTGTCG 58.002 30.769 0.00 0.00 0.00 4.35
4795 5401 1.456287 GAGGAGGGCTGTGTTTGGT 59.544 57.895 0.00 0.00 0.00 3.67
4914 5521 6.238211 GCGCAAGGATTCATATATACCATGAC 60.238 42.308 0.30 0.00 32.58 3.06
4916 5523 7.334171 CGCAAGGATTCATATATACCATGACAA 59.666 37.037 0.00 0.00 32.23 3.18
4917 5524 8.671921 GCAAGGATTCATATATACCATGACAAG 58.328 37.037 0.00 0.00 32.23 3.16
4935 5542 9.409312 CATGACAAGTATCAAATTAAGTGCAAA 57.591 29.630 0.00 0.00 30.82 3.68
4936 5543 9.630098 ATGACAAGTATCAAATTAAGTGCAAAG 57.370 29.630 0.00 0.00 30.82 2.77
4937 5544 8.845227 TGACAAGTATCAAATTAAGTGCAAAGA 58.155 29.630 0.00 0.00 0.00 2.52
4938 5545 9.846248 GACAAGTATCAAATTAAGTGCAAAGAT 57.154 29.630 0.00 0.00 0.00 2.40
4940 5547 9.294030 CAAGTATCAAATTAAGTGCAAAGATCC 57.706 33.333 0.00 0.00 0.00 3.36
4941 5548 8.579850 AGTATCAAATTAAGTGCAAAGATCCA 57.420 30.769 0.00 0.00 0.00 3.41
4942 5549 9.193806 AGTATCAAATTAAGTGCAAAGATCCAT 57.806 29.630 0.00 0.00 0.00 3.41
4945 5552 7.471721 TCAAATTAAGTGCAAAGATCCATACG 58.528 34.615 0.00 0.00 0.00 3.06
4949 5556 2.420022 AGTGCAAAGATCCATACGTTGC 59.580 45.455 0.00 0.00 46.68 4.17
4950 5557 2.091152 GCAAAGATCCATACGTTGCG 57.909 50.000 0.00 0.00 41.01 4.85
4951 5558 1.663643 GCAAAGATCCATACGTTGCGA 59.336 47.619 0.00 0.00 41.01 5.10
4952 5559 2.287915 GCAAAGATCCATACGTTGCGAT 59.712 45.455 0.00 0.00 41.01 4.58
4954 5561 4.274069 CAAAGATCCATACGTTGCGATTG 58.726 43.478 0.00 0.00 0.00 2.67
4955 5562 3.179443 AGATCCATACGTTGCGATTGT 57.821 42.857 0.00 0.00 0.00 2.71
4957 5564 3.555956 AGATCCATACGTTGCGATTGTTC 59.444 43.478 0.00 0.00 0.00 3.18
4958 5565 2.967362 TCCATACGTTGCGATTGTTCT 58.033 42.857 0.00 0.00 0.00 3.01
4959 5566 3.331150 TCCATACGTTGCGATTGTTCTT 58.669 40.909 0.00 0.00 0.00 2.52
4960 5567 3.124466 TCCATACGTTGCGATTGTTCTTG 59.876 43.478 0.00 0.00 0.00 3.02
4961 5568 3.124466 CCATACGTTGCGATTGTTCTTGA 59.876 43.478 0.00 0.00 0.00 3.02
4979 5586 8.843262 TGTTCTTGAATAGATTATTCCTGCATG 58.157 33.333 6.41 0.00 43.00 4.06
5002 5609 8.801913 CATGTCTGTGTTCTTTTTCTTTCTTTC 58.198 33.333 0.00 0.00 0.00 2.62
5003 5610 8.110860 TGTCTGTGTTCTTTTTCTTTCTTTCT 57.889 30.769 0.00 0.00 0.00 2.52
5004 5611 8.576442 TGTCTGTGTTCTTTTTCTTTCTTTCTT 58.424 29.630 0.00 0.00 0.00 2.52
5005 5612 9.411801 GTCTGTGTTCTTTTTCTTTCTTTCTTT 57.588 29.630 0.00 0.00 0.00 2.52
5006 5613 9.626045 TCTGTGTTCTTTTTCTTTCTTTCTTTC 57.374 29.630 0.00 0.00 0.00 2.62
5007 5614 9.631452 CTGTGTTCTTTTTCTTTCTTTCTTTCT 57.369 29.630 0.00 0.00 0.00 2.52
5008 5615 9.981114 TGTGTTCTTTTTCTTTCTTTCTTTCTT 57.019 25.926 0.00 0.00 0.00 2.52
5093 5712 2.554032 GCCTTTACACATGCTGTTCTGT 59.446 45.455 6.30 0.00 33.91 3.41
5095 5714 3.058016 CCTTTACACATGCTGTTCTGTGG 60.058 47.826 7.50 1.17 45.53 4.17
5153 5773 2.989422 AATCAACCTAAACGCAGCAC 57.011 45.000 0.00 0.00 0.00 4.40
5180 5800 2.758130 AGTCAGGGAAGATCCTTCCTC 58.242 52.381 21.05 13.27 38.61 3.71
5184 5804 3.521126 TCAGGGAAGATCCTTCCTCAAAG 59.479 47.826 21.05 9.89 38.61 2.77
5190 5810 6.071672 GGGAAGATCCTTCCTCAAAGAAAAAG 60.072 42.308 21.05 0.00 37.12 2.27
5191 5811 6.717084 GGAAGATCCTTCCTCAAAGAAAAAGA 59.283 38.462 16.27 0.00 37.12 2.52
5192 5812 7.231519 GGAAGATCCTTCCTCAAAGAAAAAGAA 59.768 37.037 16.27 0.00 37.12 2.52
5193 5813 8.539117 AAGATCCTTCCTCAAAGAAAAAGAAA 57.461 30.769 0.00 0.00 37.12 2.52
5194 5814 8.539117 AGATCCTTCCTCAAAGAAAAAGAAAA 57.461 30.769 0.00 0.00 37.12 2.29
5195 5815 8.981659 AGATCCTTCCTCAAAGAAAAAGAAAAA 58.018 29.630 0.00 0.00 37.12 1.94
5287 5907 1.304713 AGCGAACGTCCCCTAGGAA 60.305 57.895 11.48 0.00 46.38 3.36
5294 5914 2.598686 CGTCCCCTAGGAAGTTTAGC 57.401 55.000 11.48 0.00 46.38 3.09
5295 5915 1.829222 CGTCCCCTAGGAAGTTTAGCA 59.171 52.381 11.48 0.00 46.38 3.49
5325 6020 1.750193 CAGGATTTGCCGCCTCTTAA 58.250 50.000 0.00 0.00 43.43 1.85
5330 6025 1.681538 TTTGCCGCCTCTTAACAACA 58.318 45.000 0.00 0.00 0.00 3.33
5331 6026 1.904287 TTGCCGCCTCTTAACAACAT 58.096 45.000 0.00 0.00 0.00 2.71
5332 6027 1.904287 TGCCGCCTCTTAACAACATT 58.096 45.000 0.00 0.00 0.00 2.71
5334 6029 2.745281 TGCCGCCTCTTAACAACATTAC 59.255 45.455 0.00 0.00 0.00 1.89
5335 6030 2.096980 GCCGCCTCTTAACAACATTACC 59.903 50.000 0.00 0.00 0.00 2.85
5336 6031 3.340034 CCGCCTCTTAACAACATTACCA 58.660 45.455 0.00 0.00 0.00 3.25
5337 6032 3.754323 CCGCCTCTTAACAACATTACCAA 59.246 43.478 0.00 0.00 0.00 3.67
5338 6033 4.398044 CCGCCTCTTAACAACATTACCAAT 59.602 41.667 0.00 0.00 0.00 3.16
5339 6034 5.587043 CCGCCTCTTAACAACATTACCAATA 59.413 40.000 0.00 0.00 0.00 1.90
5340 6035 6.262273 CCGCCTCTTAACAACATTACCAATAT 59.738 38.462 0.00 0.00 0.00 1.28
5359 6054 9.430623 ACCAATATAATAAATAAATTTGCCGCC 57.569 29.630 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.322456 CTGAGGCGAATTGGTTCCCA 60.322 55.000 0.00 0.00 31.12 4.37
1 2 1.032114 CCTGAGGCGAATTGGTTCCC 61.032 60.000 0.00 0.00 0.00 3.97
2 3 1.657751 GCCTGAGGCGAATTGGTTCC 61.658 60.000 8.16 0.00 39.62 3.62
3 4 1.803289 GCCTGAGGCGAATTGGTTC 59.197 57.895 8.16 0.00 39.62 3.62
4 5 4.002797 GCCTGAGGCGAATTGGTT 57.997 55.556 8.16 0.00 39.62 3.67
42 43 1.680651 TAAAATGGCCGCCTGTGGG 60.681 57.895 11.61 0.00 0.00 4.61
43 44 1.510844 GTAAAATGGCCGCCTGTGG 59.489 57.895 11.61 0.00 0.00 4.17
44 45 1.136565 CGTAAAATGGCCGCCTGTG 59.863 57.895 11.61 0.00 0.00 3.66
45 46 2.696759 GCGTAAAATGGCCGCCTGT 61.697 57.895 11.61 0.00 41.50 4.00
46 47 2.102161 GCGTAAAATGGCCGCCTG 59.898 61.111 11.61 0.00 41.50 4.85
47 48 3.505184 CGCGTAAAATGGCCGCCT 61.505 61.111 11.61 0.00 44.29 5.52
50 51 4.546296 GGGCGCGTAAAATGGCCG 62.546 66.667 8.43 0.00 46.50 6.13
51 52 4.201679 GGGGCGCGTAAAATGGCC 62.202 66.667 8.43 0.00 46.84 5.36
52 53 1.378124 TTAGGGGCGCGTAAAATGGC 61.378 55.000 12.84 0.00 0.00 4.40
53 54 0.661020 CTTAGGGGCGCGTAAAATGG 59.339 55.000 15.51 2.42 0.00 3.16
54 55 0.661020 CCTTAGGGGCGCGTAAAATG 59.339 55.000 15.51 5.86 0.00 2.32
55 56 3.089788 CCTTAGGGGCGCGTAAAAT 57.910 52.632 15.51 0.00 0.00 1.82
56 57 4.621832 CCTTAGGGGCGCGTAAAA 57.378 55.556 15.51 0.00 0.00 1.52
76 77 1.971505 TAGAGCATCCCCAGCCGTTG 61.972 60.000 0.00 0.00 33.66 4.10
77 78 1.271840 TTAGAGCATCCCCAGCCGTT 61.272 55.000 0.00 0.00 33.66 4.44
78 79 1.689233 TTAGAGCATCCCCAGCCGT 60.689 57.895 0.00 0.00 33.66 5.68
79 80 1.070445 CTTAGAGCATCCCCAGCCG 59.930 63.158 0.00 0.00 33.66 5.52
80 81 0.107643 GACTTAGAGCATCCCCAGCC 59.892 60.000 0.00 0.00 33.66 4.85
81 82 0.107643 GGACTTAGAGCATCCCCAGC 59.892 60.000 0.00 0.00 33.66 4.85
82 83 1.500474 TGGACTTAGAGCATCCCCAG 58.500 55.000 0.00 0.00 33.66 4.45
83 84 2.173356 CAATGGACTTAGAGCATCCCCA 59.827 50.000 0.00 0.00 33.66 4.96
84 85 2.856222 CAATGGACTTAGAGCATCCCC 58.144 52.381 0.00 0.00 33.66 4.81
85 86 2.225467 GCAATGGACTTAGAGCATCCC 58.775 52.381 0.00 0.00 33.66 3.85
86 87 2.225467 GGCAATGGACTTAGAGCATCC 58.775 52.381 0.00 0.00 33.66 3.51
87 88 1.869767 CGGCAATGGACTTAGAGCATC 59.130 52.381 0.00 0.00 0.00 3.91
88 89 1.486310 TCGGCAATGGACTTAGAGCAT 59.514 47.619 0.00 0.00 0.00 3.79
89 90 0.901827 TCGGCAATGGACTTAGAGCA 59.098 50.000 0.00 0.00 0.00 4.26
90 91 1.869767 CATCGGCAATGGACTTAGAGC 59.130 52.381 0.00 0.00 0.00 4.09
91 92 1.869767 GCATCGGCAATGGACTTAGAG 59.130 52.381 1.09 0.00 40.72 2.43
92 93 1.486310 AGCATCGGCAATGGACTTAGA 59.514 47.619 1.09 0.00 44.61 2.10
93 94 1.959042 AGCATCGGCAATGGACTTAG 58.041 50.000 1.09 0.00 44.61 2.18
94 95 2.484770 GGTAGCATCGGCAATGGACTTA 60.485 50.000 1.09 0.00 44.61 2.24
95 96 1.668419 GTAGCATCGGCAATGGACTT 58.332 50.000 1.09 0.00 44.61 3.01
96 97 0.179045 GGTAGCATCGGCAATGGACT 60.179 55.000 1.09 0.00 44.61 3.85
97 98 0.179045 AGGTAGCATCGGCAATGGAC 60.179 55.000 0.00 0.00 44.61 4.02
98 99 0.179048 CAGGTAGCATCGGCAATGGA 60.179 55.000 0.00 0.00 44.61 3.41
99 100 0.179048 TCAGGTAGCATCGGCAATGG 60.179 55.000 0.00 0.00 44.61 3.16
100 101 1.667236 TTCAGGTAGCATCGGCAATG 58.333 50.000 0.00 0.00 44.61 2.82
101 102 2.418368 TTTCAGGTAGCATCGGCAAT 57.582 45.000 0.00 0.00 44.61 3.56
102 103 2.092968 AGATTTCAGGTAGCATCGGCAA 60.093 45.455 0.00 0.00 44.61 4.52
103 104 1.486310 AGATTTCAGGTAGCATCGGCA 59.514 47.619 0.00 0.00 44.61 5.69
104 105 2.246719 AGATTTCAGGTAGCATCGGC 57.753 50.000 0.00 0.00 41.61 5.54
105 106 5.567138 AAAAAGATTTCAGGTAGCATCGG 57.433 39.130 0.00 0.00 0.00 4.18
132 133 2.386661 AGTTTCAGGTAGCATCGGTG 57.613 50.000 0.00 0.00 0.00 4.94
133 134 3.074412 CAAAGTTTCAGGTAGCATCGGT 58.926 45.455 0.00 0.00 0.00 4.69
134 135 2.159517 GCAAAGTTTCAGGTAGCATCGG 60.160 50.000 0.00 0.00 0.00 4.18
135 136 2.483877 TGCAAAGTTTCAGGTAGCATCG 59.516 45.455 0.00 0.00 0.00 3.84
136 137 3.667960 CGTGCAAAGTTTCAGGTAGCATC 60.668 47.826 0.00 0.00 32.75 3.91
137 138 2.226437 CGTGCAAAGTTTCAGGTAGCAT 59.774 45.455 0.00 0.00 32.75 3.79
138 139 1.601903 CGTGCAAAGTTTCAGGTAGCA 59.398 47.619 0.00 0.00 0.00 3.49
139 140 1.602377 ACGTGCAAAGTTTCAGGTAGC 59.398 47.619 9.92 0.59 30.64 3.58
140 141 4.647291 CTACGTGCAAAGTTTCAGGTAG 57.353 45.455 20.56 20.56 41.85 3.18
141 142 4.062677 ACTACGTGCAAAGTTTCAGGTA 57.937 40.909 0.00 14.30 33.91 3.08
142 143 2.914059 ACTACGTGCAAAGTTTCAGGT 58.086 42.857 0.00 13.80 35.74 4.00
143 144 4.056050 AGTACTACGTGCAAAGTTTCAGG 58.944 43.478 0.00 0.00 0.00 3.86
144 145 6.137227 GTAGTACTACGTGCAAAGTTTCAG 57.863 41.667 16.96 0.00 0.00 3.02
162 163 9.596677 CCGATTTTAAAACAAACATTCGTAGTA 57.403 29.630 1.97 0.00 0.00 1.82
163 164 7.113825 GCCGATTTTAAAACAAACATTCGTAGT 59.886 33.333 1.97 0.00 0.00 2.73
164 165 7.325097 AGCCGATTTTAAAACAAACATTCGTAG 59.675 33.333 1.97 0.00 0.00 3.51
165 166 7.140048 AGCCGATTTTAAAACAAACATTCGTA 58.860 30.769 1.97 0.00 0.00 3.43
166 167 5.980715 AGCCGATTTTAAAACAAACATTCGT 59.019 32.000 1.97 0.00 0.00 3.85
167 168 6.446659 AGCCGATTTTAAAACAAACATTCG 57.553 33.333 1.97 6.81 0.00 3.34
168 169 7.042389 TGGAAGCCGATTTTAAAACAAACATTC 60.042 33.333 1.97 4.37 0.00 2.67
169 170 6.763610 TGGAAGCCGATTTTAAAACAAACATT 59.236 30.769 1.97 0.00 0.00 2.71
170 171 6.201997 GTGGAAGCCGATTTTAAAACAAACAT 59.798 34.615 1.97 0.00 0.00 2.71
171 172 5.520649 GTGGAAGCCGATTTTAAAACAAACA 59.479 36.000 1.97 0.00 0.00 2.83
172 173 5.520649 TGTGGAAGCCGATTTTAAAACAAAC 59.479 36.000 1.97 0.00 0.00 2.93
173 174 5.661458 TGTGGAAGCCGATTTTAAAACAAA 58.339 33.333 1.97 0.00 0.00 2.83
174 175 5.263968 TGTGGAAGCCGATTTTAAAACAA 57.736 34.783 1.97 0.00 0.00 2.83
175 176 4.920640 TGTGGAAGCCGATTTTAAAACA 57.079 36.364 1.97 0.00 0.00 2.83
176 177 7.464045 GCATATTGTGGAAGCCGATTTTAAAAC 60.464 37.037 1.97 0.00 0.00 2.43
177 178 6.533367 GCATATTGTGGAAGCCGATTTTAAAA 59.467 34.615 2.51 2.51 0.00 1.52
178 179 6.039616 GCATATTGTGGAAGCCGATTTTAAA 58.960 36.000 0.00 0.00 0.00 1.52
179 180 5.587289 GCATATTGTGGAAGCCGATTTTAA 58.413 37.500 0.00 0.00 0.00 1.52
180 181 4.260990 CGCATATTGTGGAAGCCGATTTTA 60.261 41.667 0.00 0.00 0.00 1.52
181 182 3.489059 CGCATATTGTGGAAGCCGATTTT 60.489 43.478 0.00 0.00 0.00 1.82
182 183 2.033299 CGCATATTGTGGAAGCCGATTT 59.967 45.455 0.00 0.00 0.00 2.17
183 184 1.603802 CGCATATTGTGGAAGCCGATT 59.396 47.619 0.00 0.00 0.00 3.34
184 185 1.229428 CGCATATTGTGGAAGCCGAT 58.771 50.000 0.00 0.00 0.00 4.18
185 186 0.107897 ACGCATATTGTGGAAGCCGA 60.108 50.000 0.00 0.00 30.87 5.54
186 187 1.260561 GTACGCATATTGTGGAAGCCG 59.739 52.381 0.00 0.00 30.87 5.52
187 188 2.287915 CAGTACGCATATTGTGGAAGCC 59.712 50.000 0.00 0.00 30.87 4.35
188 189 2.287915 CCAGTACGCATATTGTGGAAGC 59.712 50.000 0.00 0.00 30.87 3.86
189 190 3.792401 TCCAGTACGCATATTGTGGAAG 58.208 45.455 0.00 0.00 31.08 3.46
190 191 3.897141 TCCAGTACGCATATTGTGGAA 57.103 42.857 0.00 0.00 31.08 3.53
191 192 3.897141 TTCCAGTACGCATATTGTGGA 57.103 42.857 0.00 0.00 32.17 4.02
192 193 4.955925 TTTTCCAGTACGCATATTGTGG 57.044 40.909 0.00 0.00 30.87 4.17
211 212 0.109723 TAGTCGGCAGCCCACTTTTT 59.890 50.000 17.78 0.00 0.00 1.94
212 213 0.328258 ATAGTCGGCAGCCCACTTTT 59.672 50.000 17.78 2.80 0.00 2.27
213 214 0.328258 AATAGTCGGCAGCCCACTTT 59.672 50.000 17.78 6.68 0.00 2.66
214 215 0.107654 GAATAGTCGGCAGCCCACTT 60.108 55.000 17.78 0.00 0.00 3.16
215 216 1.264749 TGAATAGTCGGCAGCCCACT 61.265 55.000 16.74 16.74 0.00 4.00
216 217 1.090052 GTGAATAGTCGGCAGCCCAC 61.090 60.000 5.63 2.62 0.00 4.61
217 218 1.220749 GTGAATAGTCGGCAGCCCA 59.779 57.895 5.63 0.00 0.00 5.36
218 219 0.811616 CTGTGAATAGTCGGCAGCCC 60.812 60.000 5.63 0.00 0.00 5.19
219 220 0.108138 ACTGTGAATAGTCGGCAGCC 60.108 55.000 0.00 0.00 34.55 4.85
220 221 1.281899 GACTGTGAATAGTCGGCAGC 58.718 55.000 12.44 0.00 37.88 5.25
226 227 7.390718 ACTTTATGGGTTTGACTGTGAATAGTC 59.609 37.037 0.61 0.61 45.71 2.59
227 228 7.174946 CACTTTATGGGTTTGACTGTGAATAGT 59.825 37.037 0.00 0.00 0.00 2.12
228 229 7.174946 ACACTTTATGGGTTTGACTGTGAATAG 59.825 37.037 0.00 0.00 0.00 1.73
229 230 7.001674 ACACTTTATGGGTTTGACTGTGAATA 58.998 34.615 0.00 0.00 0.00 1.75
230 231 5.833131 ACACTTTATGGGTTTGACTGTGAAT 59.167 36.000 0.00 0.00 0.00 2.57
231 232 5.197451 ACACTTTATGGGTTTGACTGTGAA 58.803 37.500 0.00 0.00 0.00 3.18
232 233 4.787551 ACACTTTATGGGTTTGACTGTGA 58.212 39.130 0.00 0.00 0.00 3.58
233 234 5.514274 AACACTTTATGGGTTTGACTGTG 57.486 39.130 0.00 0.00 39.70 3.66
234 235 4.274950 CGAACACTTTATGGGTTTGACTGT 59.725 41.667 0.00 0.00 44.35 3.55
235 236 4.783242 CGAACACTTTATGGGTTTGACTG 58.217 43.478 0.00 0.00 44.35 3.51
236 237 3.252458 GCGAACACTTTATGGGTTTGACT 59.748 43.478 4.86 0.00 44.35 3.41
237 238 3.561503 GCGAACACTTTATGGGTTTGAC 58.438 45.455 4.86 0.00 44.35 3.18
238 239 2.554893 GGCGAACACTTTATGGGTTTGA 59.445 45.455 4.86 0.00 44.35 2.69
239 240 2.294791 TGGCGAACACTTTATGGGTTTG 59.705 45.455 0.00 0.00 43.32 2.93
240 241 2.588620 TGGCGAACACTTTATGGGTTT 58.411 42.857 0.00 0.00 43.32 3.27
241 242 2.279935 TGGCGAACACTTTATGGGTT 57.720 45.000 0.00 0.00 46.45 4.11
242 243 2.279935 TTGGCGAACACTTTATGGGT 57.720 45.000 0.00 0.00 0.00 4.51
243 244 3.651803 TTTTGGCGAACACTTTATGGG 57.348 42.857 0.00 0.00 0.00 4.00
263 264 7.045126 TCCAATCGAACACTTTATGGTTTTT 57.955 32.000 0.00 0.00 0.00 1.94
267 268 4.906618 ACTCCAATCGAACACTTTATGGT 58.093 39.130 0.00 0.00 0.00 3.55
279 280 4.024387 CGAAAAGGAAACAACTCCAATCGA 60.024 41.667 0.00 0.00 38.39 3.59
281 282 5.212934 GTCGAAAAGGAAACAACTCCAATC 58.787 41.667 0.00 0.00 38.02 2.67
283 284 3.064271 CGTCGAAAAGGAAACAACTCCAA 59.936 43.478 0.00 0.00 38.02 3.53
472 483 1.664016 CCAAGCTTGTGCACGTGAATC 60.664 52.381 24.35 8.88 42.74 2.52
473 484 0.311790 CCAAGCTTGTGCACGTGAAT 59.688 50.000 24.35 0.00 42.74 2.57
580 591 2.582498 GTTCGTCCGATCCTGCCG 60.582 66.667 0.00 0.00 0.00 5.69
617 628 0.249155 TGTGTGTCGTTCGTTCCTCC 60.249 55.000 0.00 0.00 0.00 4.30
732 748 5.269991 TCTGTAGCCTAGCCTAGAGAAAAA 58.730 41.667 5.22 0.00 35.52 1.94
737 753 4.093472 TCTTCTGTAGCCTAGCCTAGAG 57.907 50.000 0.00 0.00 31.81 2.43
739 755 3.572255 CCTTCTTCTGTAGCCTAGCCTAG 59.428 52.174 0.00 0.00 0.00 3.02
741 757 2.023888 TCCTTCTTCTGTAGCCTAGCCT 60.024 50.000 0.00 0.00 0.00 4.58
742 758 2.389715 TCCTTCTTCTGTAGCCTAGCC 58.610 52.381 0.00 0.00 0.00 3.93
784 809 3.825833 GAGGAGCACGTATCCCGCG 62.826 68.421 13.86 0.00 41.42 6.46
835 860 1.753368 GAGGGAGATTCAGGCGGAGG 61.753 65.000 0.00 0.00 0.00 4.30
836 861 0.758685 AGAGGGAGATTCAGGCGGAG 60.759 60.000 0.00 0.00 0.00 4.63
837 862 0.556258 TAGAGGGAGATTCAGGCGGA 59.444 55.000 0.00 0.00 0.00 5.54
939 970 1.429021 CAATGGCCGGATTCACACG 59.571 57.895 5.05 0.00 0.00 4.49
946 977 1.076777 CCTTCACCAATGGCCGGAT 60.077 57.895 5.05 0.00 0.00 4.18
1059 1094 1.421646 GAGAGAGAGAGAGAGGAGGGG 59.578 61.905 0.00 0.00 0.00 4.79
1060 1095 2.105477 CAGAGAGAGAGAGAGAGGAGGG 59.895 59.091 0.00 0.00 0.00 4.30
1061 1096 2.774234 ACAGAGAGAGAGAGAGAGGAGG 59.226 54.545 0.00 0.00 0.00 4.30
1081 1117 1.864711 ACATACAGACGCAACACACAC 59.135 47.619 0.00 0.00 0.00 3.82
1083 1119 4.387559 TCATAACATACAGACGCAACACAC 59.612 41.667 0.00 0.00 0.00 3.82
1085 1121 5.520288 AGATCATAACATACAGACGCAACAC 59.480 40.000 0.00 0.00 0.00 3.32
1088 1124 5.660460 ACAGATCATAACATACAGACGCAA 58.340 37.500 0.00 0.00 0.00 4.85
1115 1157 4.225984 GCAGAAACATAACATTGCGAACA 58.774 39.130 0.00 0.00 0.00 3.18
1138 1180 4.155826 TGATGAATGGATTGTTTCGTGGAC 59.844 41.667 0.00 0.00 0.00 4.02
1161 1207 8.562892 CAGATACAAGAAACAGAGTTTGAACAT 58.437 33.333 0.00 0.00 0.00 2.71
1232 1290 2.033602 GGAACTCCACAACCCCCG 59.966 66.667 0.00 0.00 35.64 5.73
1250 1308 0.243636 ATTTCGCTTCCCCGCTTTTG 59.756 50.000 0.00 0.00 0.00 2.44
1262 1320 1.153549 GGGCTCTGTCGATTTCGCT 60.154 57.895 0.00 0.00 39.60 4.93
1281 1339 0.875474 CCTTTTTGCGCCAACAGGTG 60.875 55.000 16.26 0.00 35.99 4.00
1282 1340 1.040339 TCCTTTTTGCGCCAACAGGT 61.040 50.000 21.78 0.00 30.27 4.00
1283 1341 0.597377 GTCCTTTTTGCGCCAACAGG 60.597 55.000 17.95 17.95 0.00 4.00
1284 1342 0.102120 TGTCCTTTTTGCGCCAACAG 59.898 50.000 4.18 2.02 0.00 3.16
1285 1343 0.532573 TTGTCCTTTTTGCGCCAACA 59.467 45.000 4.18 0.00 0.00 3.33
1286 1344 1.646189 TTTGTCCTTTTTGCGCCAAC 58.354 45.000 4.18 0.00 0.00 3.77
1287 1345 2.275318 CTTTTGTCCTTTTTGCGCCAA 58.725 42.857 4.18 0.00 0.00 4.52
1288 1346 1.472376 CCTTTTGTCCTTTTTGCGCCA 60.472 47.619 4.18 0.00 0.00 5.69
1289 1347 1.202475 TCCTTTTGTCCTTTTTGCGCC 60.202 47.619 4.18 0.00 0.00 6.53
1290 1348 2.217429 TCCTTTTGTCCTTTTTGCGC 57.783 45.000 0.00 0.00 0.00 6.09
1291 1349 4.491763 CGTTTTCCTTTTGTCCTTTTTGCG 60.492 41.667 0.00 0.00 0.00 4.85
1292 1350 4.726591 GCGTTTTCCTTTTGTCCTTTTTGC 60.727 41.667 0.00 0.00 0.00 3.68
1293 1351 4.629634 AGCGTTTTCCTTTTGTCCTTTTTG 59.370 37.500 0.00 0.00 0.00 2.44
1330 1388 0.456221 GAAGAGAATCCTCCACGCGA 59.544 55.000 15.93 0.00 40.30 5.87
1331 1389 0.457851 AGAAGAGAATCCTCCACGCG 59.542 55.000 3.53 3.53 40.30 6.01
1392 1454 0.915364 CTCCCCTCCCCTCAAGAAAG 59.085 60.000 0.00 0.00 0.00 2.62
1794 1925 2.739913 CGACGGAAGCAACAAAAGGATA 59.260 45.455 0.00 0.00 0.00 2.59
1798 1929 3.479006 CATACGACGGAAGCAACAAAAG 58.521 45.455 0.00 0.00 0.00 2.27
1804 1935 0.108520 GGACCATACGACGGAAGCAA 60.109 55.000 0.00 0.00 0.00 3.91
1811 1942 0.245539 ACAAGGTGGACCATACGACG 59.754 55.000 0.00 0.00 38.89 5.12
1929 2064 7.232737 TGGAGAGTTTAAAGAGTGTGATCTGTA 59.767 37.037 0.00 0.00 0.00 2.74
2041 2179 4.898320 AGCATAATCAATCGCATGGTAGA 58.102 39.130 0.00 0.00 0.00 2.59
2083 2221 9.282247 CAAATAAGTTCTTGCATGAGATGTAAC 57.718 33.333 0.00 0.00 31.55 2.50
2124 2265 2.959516 GCTAAGCGCCTTTCCATTTTT 58.040 42.857 2.29 0.00 0.00 1.94
2125 2266 2.654749 GCTAAGCGCCTTTCCATTTT 57.345 45.000 2.29 0.00 0.00 1.82
2210 2352 9.729281 ATAAAGCATCCATTTTCACAATTTCTT 57.271 25.926 0.00 0.00 0.00 2.52
2237 2379 6.986904 ATCTGGAATACGGAAGTTCTTTTC 57.013 37.500 2.25 1.80 46.40 2.29
2271 2418 6.954487 TGATACTGCTAGTCTCGGAATAAA 57.046 37.500 0.00 0.00 0.00 1.40
2272 2419 6.570571 GCATGATACTGCTAGTCTCGGAATAA 60.571 42.308 0.00 0.00 39.12 1.40
2277 2424 2.294512 TGCATGATACTGCTAGTCTCGG 59.705 50.000 0.00 0.00 42.75 4.63
2278 2425 3.632855 TGCATGATACTGCTAGTCTCG 57.367 47.619 0.00 0.00 42.75 4.04
2365 2512 7.612668 AGACAAATATATCATCAGATGCTGC 57.387 36.000 5.41 0.00 35.67 5.25
2366 2513 9.827411 CAAAGACAAATATATCATCAGATGCTG 57.173 33.333 5.41 0.00 35.67 4.41
2394 2541 1.696884 TGTCACATGGCCAAGTAGTCA 59.303 47.619 14.30 10.20 0.00 3.41
2435 2588 4.720649 TTTCAGAGGTAGAGTGATTCCG 57.279 45.455 0.00 0.00 0.00 4.30
2569 2722 5.363868 TCACACAATAAGAGCTAGTATGCCT 59.636 40.000 0.00 0.00 0.00 4.75
2665 2821 2.660572 GAGCAGTCCTCTCATCCTGTA 58.339 52.381 0.00 0.00 37.60 2.74
2854 3035 1.312815 GGAGCATATGGTTCCAGTGC 58.687 55.000 9.14 18.07 45.59 4.40
2862 3043 2.776536 AGCAGAAAGAGGAGCATATGGT 59.223 45.455 7.23 7.23 0.00 3.55
2953 3134 1.234821 TTGCAAGTCCGTAGCTTTGG 58.765 50.000 0.00 0.00 0.00 3.28
2963 3144 3.018856 TGGATCATGTCATTGCAAGTCC 58.981 45.455 4.94 3.11 0.00 3.85
2964 3145 4.707030 TTGGATCATGTCATTGCAAGTC 57.293 40.909 4.94 0.00 0.00 3.01
3443 3631 5.874810 GGATTTGCTACAGTGAGTACATGAA 59.125 40.000 0.00 0.00 0.00 2.57
3634 4028 0.543410 TGTGGCCGGAGTAGGAGAAA 60.543 55.000 5.05 0.00 0.00 2.52
3946 4340 6.672357 GCGCTGGTACAATGTCTAAGTTTTAG 60.672 42.308 0.00 0.00 38.70 1.85
3947 4341 5.121142 GCGCTGGTACAATGTCTAAGTTTTA 59.879 40.000 0.00 0.00 38.70 1.52
3949 4343 3.435671 GCGCTGGTACAATGTCTAAGTTT 59.564 43.478 0.00 0.00 38.70 2.66
3951 4345 2.233922 AGCGCTGGTACAATGTCTAAGT 59.766 45.455 10.39 0.00 38.70 2.24
3954 4348 2.361119 CCTAGCGCTGGTACAATGTCTA 59.639 50.000 22.90 0.00 38.70 2.59
3955 4349 1.137086 CCTAGCGCTGGTACAATGTCT 59.863 52.381 22.90 0.00 38.70 3.41
3969 4520 3.001431 CCGTCAGATATATCGTCCTAGCG 59.999 52.174 7.08 6.51 0.00 4.26
4041 4592 3.588955 CAGAAACGTCTCCATCATGTCA 58.411 45.455 0.00 0.00 28.78 3.58
4134 4685 4.046938 TGAGATGAGATTAGTCAACGGC 57.953 45.455 0.00 0.00 0.00 5.68
4361 4942 5.296780 CCATGACAGTTACATATGGTCCAAC 59.703 44.000 7.80 5.78 34.88 3.77
4512 5104 6.383726 CCCAAAAGGAAAATCAGGATGGAATA 59.616 38.462 0.00 0.00 38.24 1.75
4515 5107 4.095946 CCCAAAAGGAAAATCAGGATGGA 58.904 43.478 0.00 0.00 38.24 3.41
4691 5297 9.737427 TTCTTTGCAACGACAGAAAATAAAATA 57.263 25.926 4.93 0.00 0.00 1.40
4692 5298 8.641499 TTCTTTGCAACGACAGAAAATAAAAT 57.359 26.923 4.93 0.00 0.00 1.82
4707 5313 4.202151 ACCATGGTCTTTCTTCTTTGCAAC 60.202 41.667 13.00 0.00 0.00 4.17
4795 5401 1.279846 GGACCCCTTCACGATTTACCA 59.720 52.381 0.00 0.00 0.00 3.25
4833 5440 3.684305 CGAGTACATGCATGAAAACTCCA 59.316 43.478 31.84 12.15 34.88 3.86
4882 5489 9.542462 GTATATATGAATCCTTGCGCCTATTTA 57.458 33.333 4.18 0.00 0.00 1.40
4914 5521 9.294030 GGATCTTTGCACTTAATTTGATACTTG 57.706 33.333 0.00 0.00 0.00 3.16
4916 5523 8.579850 TGGATCTTTGCACTTAATTTGATACT 57.420 30.769 0.00 0.00 0.00 2.12
4935 5542 3.179443 ACAATCGCAACGTATGGATCT 57.821 42.857 0.00 0.00 0.00 2.75
4936 5543 3.555956 AGAACAATCGCAACGTATGGATC 59.444 43.478 0.00 0.00 0.00 3.36
4937 5544 3.531538 AGAACAATCGCAACGTATGGAT 58.468 40.909 0.00 0.00 0.00 3.41
4938 5545 2.967362 AGAACAATCGCAACGTATGGA 58.033 42.857 0.00 0.00 0.00 3.41
4940 5547 4.320667 TCAAGAACAATCGCAACGTATG 57.679 40.909 0.00 0.00 0.00 2.39
4941 5548 5.545658 ATTCAAGAACAATCGCAACGTAT 57.454 34.783 0.00 0.00 0.00 3.06
4942 5549 5.865013 TCTATTCAAGAACAATCGCAACGTA 59.135 36.000 0.00 0.00 0.00 3.57
4943 5550 3.896648 ATTCAAGAACAATCGCAACGT 57.103 38.095 0.00 0.00 0.00 3.99
4944 5551 5.203358 TCTATTCAAGAACAATCGCAACG 57.797 39.130 0.00 0.00 0.00 4.10
4945 5552 9.722056 AATAATCTATTCAAGAACAATCGCAAC 57.278 29.630 0.00 0.00 37.89 4.17
4950 5557 9.890352 GCAGGAATAATCTATTCAAGAACAATC 57.110 33.333 8.30 0.00 44.92 2.67
4951 5558 9.412460 TGCAGGAATAATCTATTCAAGAACAAT 57.588 29.630 8.30 0.00 44.92 2.71
4952 5559 8.806429 TGCAGGAATAATCTATTCAAGAACAA 57.194 30.769 8.30 0.00 44.92 2.83
4954 5561 8.844244 ACATGCAGGAATAATCTATTCAAGAAC 58.156 33.333 4.84 0.00 44.92 3.01
4955 5562 8.985315 ACATGCAGGAATAATCTATTCAAGAA 57.015 30.769 4.84 0.00 44.92 2.52
4957 5564 8.504815 CAGACATGCAGGAATAATCTATTCAAG 58.495 37.037 4.84 2.31 44.92 3.02
4958 5565 7.994911 ACAGACATGCAGGAATAATCTATTCAA 59.005 33.333 4.84 0.00 44.92 2.69
4959 5566 7.443272 CACAGACATGCAGGAATAATCTATTCA 59.557 37.037 4.84 0.00 44.92 2.57
4960 5567 7.443575 ACACAGACATGCAGGAATAATCTATTC 59.556 37.037 4.84 0.00 42.94 1.75
4961 5568 7.285566 ACACAGACATGCAGGAATAATCTATT 58.714 34.615 4.84 0.00 0.00 1.73
4979 5586 8.972262 AAGAAAGAAAGAAAAAGAACACAGAC 57.028 30.769 0.00 0.00 0.00 3.51
5153 5773 3.643792 AGGATCTTCCCTGACTTATTCCG 59.356 47.826 0.00 0.00 37.19 4.30
5158 5778 4.264850 TGAGGAAGGATCTTCCCTGACTTA 60.265 45.833 19.60 0.00 37.19 2.24
5198 5818 9.198837 ACTTTTTCGAGCAAGTTTTTCTTTTTA 57.801 25.926 5.67 0.00 33.63 1.52
5199 5819 8.083462 ACTTTTTCGAGCAAGTTTTTCTTTTT 57.917 26.923 5.67 0.00 33.63 1.94
5200 5820 7.383843 TGACTTTTTCGAGCAAGTTTTTCTTTT 59.616 29.630 11.44 0.00 33.22 2.27
5201 5821 6.866248 TGACTTTTTCGAGCAAGTTTTTCTTT 59.134 30.769 11.44 0.00 33.22 2.52
5202 5822 6.386654 TGACTTTTTCGAGCAAGTTTTTCTT 58.613 32.000 11.44 0.00 33.22 2.52
5203 5823 5.949735 TGACTTTTTCGAGCAAGTTTTTCT 58.050 33.333 11.44 0.00 33.22 2.52
5204 5824 5.230097 CCTGACTTTTTCGAGCAAGTTTTTC 59.770 40.000 11.44 2.06 33.22 2.29
5205 5825 5.102313 CCTGACTTTTTCGAGCAAGTTTTT 58.898 37.500 11.44 0.00 33.22 1.94
5213 5833 2.767505 TCTTCCCTGACTTTTTCGAGC 58.232 47.619 0.00 0.00 0.00 5.03
5217 5837 5.308825 TCAGTGATCTTCCCTGACTTTTTC 58.691 41.667 0.00 0.00 30.58 2.29
5256 5876 5.333513 GGACGTTCGCTGATCCTATTATAG 58.666 45.833 0.00 0.00 0.00 1.31
5276 5896 3.994931 TTGCTAAACTTCCTAGGGGAC 57.005 47.619 9.46 0.00 42.05 4.46
5334 6029 9.651913 AGGCGGCAAATTTATTTATTATATTGG 57.348 29.630 13.08 0.00 0.00 3.16
5339 6034 9.260002 CAAAGAGGCGGCAAATTTATTTATTAT 57.740 29.630 13.08 0.00 0.00 1.28
5340 6035 7.708752 CCAAAGAGGCGGCAAATTTATTTATTA 59.291 33.333 13.08 0.00 0.00 0.98
5343 6038 5.046950 ACCAAAGAGGCGGCAAATTTATTTA 60.047 36.000 13.08 0.00 43.14 1.40
5347 6042 2.029470 CACCAAAGAGGCGGCAAATTTA 60.029 45.455 13.08 0.00 43.14 1.40
5348 6043 1.047801 ACCAAAGAGGCGGCAAATTT 58.952 45.000 13.08 5.98 43.14 1.82
5349 6044 0.318120 CACCAAAGAGGCGGCAAATT 59.682 50.000 13.08 0.00 43.14 1.82
5351 6046 2.199652 CCACCAAAGAGGCGGCAAA 61.200 57.895 13.08 0.00 43.14 3.68
5354 6049 2.747855 CTCCACCAAAGAGGCGGC 60.748 66.667 0.00 0.00 39.61 6.53
5356 6051 1.266989 GTTTTCTCCACCAAAGAGGCG 59.733 52.381 0.00 0.00 43.14 5.52
5357 6052 2.306847 TGTTTTCTCCACCAAAGAGGC 58.693 47.619 0.00 0.00 43.14 4.70
5358 6053 6.648879 TTATTGTTTTCTCCACCAAAGAGG 57.351 37.500 0.00 0.00 45.67 3.69
5534 6250 6.314648 CACTTGCATCTCTCAGCATTACTTTA 59.685 38.462 0.00 0.00 40.94 1.85
5535 6251 5.123502 CACTTGCATCTCTCAGCATTACTTT 59.876 40.000 0.00 0.00 40.94 2.66
5536 6252 4.634883 CACTTGCATCTCTCAGCATTACTT 59.365 41.667 0.00 0.00 40.94 2.24
5537 6253 4.190001 CACTTGCATCTCTCAGCATTACT 58.810 43.478 0.00 0.00 40.94 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.