Multiple sequence alignment - TraesCS7B01G212200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G212200 chr7B 100.000 5113 0 0 1 5113 388168532 388173644 0.000000e+00 9443.0
1 TraesCS7B01G212200 chr7D 92.736 3703 187 41 121 3791 391579447 391583099 0.000000e+00 5273.0
2 TraesCS7B01G212200 chr7D 92.094 721 33 8 3885 4602 391583098 391583797 0.000000e+00 994.0
3 TraesCS7B01G212200 chr7D 92.565 269 15 2 4603 4866 391583861 391584129 1.040000e-101 381.0
4 TraesCS7B01G212200 chr7D 92.045 88 7 0 2 89 500775473 500775560 1.930000e-24 124.0
5 TraesCS7B01G212200 chr7D 96.923 65 2 0 5049 5113 391584484 391584548 5.410000e-20 110.0
6 TraesCS7B01G212200 chr7A 95.268 1754 78 4 1978 3731 443392570 443394318 0.000000e+00 2774.0
7 TraesCS7B01G212200 chr7A 92.072 1955 95 26 121 2051 443390653 443392571 0.000000e+00 2697.0
8 TraesCS7B01G212200 chr7A 92.561 699 41 6 3915 4602 443394320 443395018 0.000000e+00 992.0
9 TraesCS7B01G212200 chr7A 93.450 229 14 1 4641 4868 443395356 443395584 6.340000e-89 339.0
10 TraesCS7B01G212200 chr1A 88.462 130 14 1 4984 5113 73316840 73316712 6.850000e-34 156.0
11 TraesCS7B01G212200 chr3B 85.315 143 18 3 4972 5113 254941511 254941371 1.480000e-30 145.0
12 TraesCS7B01G212200 chr3B 91.011 89 8 0 1 89 501986630 501986718 2.500000e-23 121.0
13 TraesCS7B01G212200 chr3B 100.000 40 0 0 5074 5113 501973871 501973832 1.970000e-09 75.0
14 TraesCS7B01G212200 chr5D 92.708 96 7 0 3788 3883 134782108 134782203 6.900000e-29 139.0
15 TraesCS7B01G212200 chr5D 88.288 111 11 2 3780 3889 369429234 369429125 1.160000e-26 132.0
16 TraesCS7B01G212200 chr5B 91.919 99 8 0 3789 3887 316712702 316712604 6.900000e-29 139.0
17 TraesCS7B01G212200 chr3A 91.089 101 9 0 3783 3883 444462760 444462660 2.480000e-28 137.0
18 TraesCS7B01G212200 chr3A 97.500 40 1 0 5074 5113 507759227 507759188 9.190000e-08 69.4
19 TraesCS7B01G212200 chr1B 91.176 102 7 2 3783 3883 572529352 572529452 2.480000e-28 137.0
20 TraesCS7B01G212200 chr1B 91.011 89 6 1 1 89 586282276 586282190 8.990000e-23 119.0
21 TraesCS7B01G212200 chr1B 88.608 79 9 0 4797 4875 457468498 457468576 4.210000e-16 97.1
22 TraesCS7B01G212200 chr2D 89.623 106 11 0 3790 3895 445894980 445894875 8.930000e-28 135.0
23 TraesCS7B01G212200 chr2D 84.828 145 11 6 4972 5113 649143501 649143637 8.930000e-28 135.0
24 TraesCS7B01G212200 chr2D 92.857 84 6 0 2 85 387193711 387193794 6.950000e-24 122.0
25 TraesCS7B01G212200 chr3D 85.385 130 15 2 4984 5113 175544564 175544439 1.160000e-26 132.0
26 TraesCS7B01G212200 chr3D 91.011 89 8 0 1 89 32623504 32623416 2.500000e-23 121.0
27 TraesCS7B01G212200 chr3D 100.000 40 0 0 5074 5113 386293290 386293251 1.970000e-09 75.0
28 TraesCS7B01G212200 chr2B 93.258 89 6 0 1 89 249200180 249200268 1.160000e-26 132.0
29 TraesCS7B01G212200 chr2B 87.500 112 14 0 3776 3887 7566736 7566847 4.150000e-26 130.0
30 TraesCS7B01G212200 chr1D 88.288 111 12 1 3788 3898 420554540 420554649 1.160000e-26 132.0
31 TraesCS7B01G212200 chr6B 87.500 112 14 0 3778 3889 684940290 684940401 4.150000e-26 130.0
32 TraesCS7B01G212200 chr6A 93.103 87 6 0 2 88 539868119 539868033 1.490000e-25 128.0
33 TraesCS7B01G212200 chr5A 92.135 89 7 0 1 89 3436925 3437013 5.370000e-25 126.0
34 TraesCS7B01G212200 chr4A 92.941 85 6 0 1 85 651625870 651625954 1.930000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G212200 chr7B 388168532 388173644 5112 False 9443.0 9443 100.00000 1 5113 1 chr7B.!!$F1 5112
1 TraesCS7B01G212200 chr7D 391579447 391584548 5101 False 1689.5 5273 93.57950 121 5113 4 chr7D.!!$F2 4992
2 TraesCS7B01G212200 chr7A 443390653 443395584 4931 False 1700.5 2774 93.33775 121 4868 4 chr7A.!!$F1 4747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 756 0.109319 GCGGCTAACCCACAACAATG 60.109 55.000 0.00 0.0 0.00 2.82 F
1227 1241 0.762418 TTCTTGCCGGGAACTGAAGA 59.238 50.000 3.37 0.0 36.31 2.87 F
1708 1736 0.464036 TGAGGTAGGCTGTTATGGCG 59.536 55.000 0.00 0.0 37.59 5.69 F
2324 2428 0.476338 TGCCCTGTTTAGTTCAGCCA 59.524 50.000 0.00 0.0 0.00 4.75 F
3576 3680 1.337167 GGGTTTTCCTGCTGCAATGTC 60.337 52.381 3.02 0.0 40.46 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1718 0.464452 ACGCCATAACAGCCTACCTC 59.536 55.0 0.00 0.0 0.00 3.85 R
2399 2503 1.317613 GGTGCACATGTCCTTGTCAA 58.682 50.0 20.43 0.0 0.00 3.18 R
3576 3680 2.846039 ACTACAAGCGGTCGTAGATG 57.154 50.0 18.97 0.0 40.67 2.90 R
3871 3975 0.757512 GGTTCTATTCCCTCCGTCCC 59.242 60.0 0.00 0.0 0.00 4.46 R
5025 5717 0.182299 CTTCCCCCATCTTGAGCTCC 59.818 60.0 12.15 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.883142 AGTCTTTTTAGAGATTTCACTATGGAG 57.117 33.333 0.00 0.00 0.00 3.86
35 36 9.660180 GTCTTTTTAGAGATTTCACTATGGAGT 57.340 33.333 0.00 0.00 35.80 3.85
42 43 7.877003 AGAGATTTCACTATGGAGTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
43 44 7.720074 AGAGATTTCACTATGGAGTACATACGA 59.280 37.037 0.00 0.00 41.03 3.43
44 45 8.234136 AGATTTCACTATGGAGTACATACGAA 57.766 34.615 0.00 0.00 41.03 3.85
45 46 8.861086 AGATTTCACTATGGAGTACATACGAAT 58.139 33.333 0.00 0.00 41.03 3.34
46 47 8.818141 ATTTCACTATGGAGTACATACGAATG 57.182 34.615 0.00 0.00 41.03 2.67
48 49 8.454570 TTCACTATGGAGTACATACGAATGTA 57.545 34.615 0.00 0.00 45.66 2.29
116 117 9.881529 GACTTATAGAGTATTTAGGAACAGACG 57.118 37.037 0.00 0.00 39.19 4.18
117 118 8.848182 ACTTATAGAGTATTTAGGAACAGACGG 58.152 37.037 0.00 0.00 36.65 4.79
118 119 8.985315 TTATAGAGTATTTAGGAACAGACGGA 57.015 34.615 0.00 0.00 0.00 4.69
119 120 5.838531 AGAGTATTTAGGAACAGACGGAG 57.161 43.478 0.00 0.00 0.00 4.63
138 139 7.657023 ACGGAGTAGAACTTTAATAGGACAT 57.343 36.000 0.00 0.00 41.94 3.06
139 140 7.490000 ACGGAGTAGAACTTTAATAGGACATG 58.510 38.462 0.00 0.00 41.94 3.21
140 141 6.421202 CGGAGTAGAACTTTAATAGGACATGC 59.579 42.308 0.00 0.00 0.00 4.06
160 161 2.489971 CAACAACTTACCGGCTTCTCA 58.510 47.619 0.00 0.00 0.00 3.27
214 215 1.283613 TGCGGGATGTGAGGGTTAATT 59.716 47.619 0.00 0.00 0.00 1.40
318 319 3.749609 TCACGAGACTTGAACGATACTGA 59.250 43.478 0.00 0.00 0.00 3.41
322 323 4.731000 CGAGACTTGAACGATACTGACATC 59.269 45.833 0.00 0.00 0.00 3.06
338 339 4.289342 TGACATCAACGCAAAAATCACAG 58.711 39.130 0.00 0.00 0.00 3.66
340 341 2.859526 TCAACGCAAAAATCACAGCA 57.140 40.000 0.00 0.00 0.00 4.41
341 342 3.156511 TCAACGCAAAAATCACAGCAA 57.843 38.095 0.00 0.00 0.00 3.91
360 361 4.097437 AGCAATAAGATAACTGTCGACGGA 59.903 41.667 30.55 9.94 0.00 4.69
371 372 3.869747 TCGACGGAAATTCGACACA 57.130 47.368 0.00 0.00 40.51 3.72
375 376 0.947180 ACGGAAATTCGACACACCGG 60.947 55.000 19.19 0.00 43.76 5.28
379 380 1.868498 GAAATTCGACACACCGGTCAA 59.132 47.619 2.59 0.00 37.66 3.18
380 381 1.223187 AATTCGACACACCGGTCAAC 58.777 50.000 2.59 0.00 37.66 3.18
398 399 5.051307 GGTCAACAAATTAGGCAACGAAAAC 60.051 40.000 0.00 0.00 46.39 2.43
422 423 3.708544 CGGCCCCCTACGAAACCA 61.709 66.667 0.00 0.00 0.00 3.67
443 444 6.062095 ACCATAATTCCCTTCGAATCGAAAT 58.938 36.000 18.99 6.98 45.23 2.17
449 450 5.734855 TCCCTTCGAATCGAAATCAATTC 57.265 39.130 18.99 0.00 45.23 2.17
455 456 3.242413 CGAATCGAAATCAATTCTGCCGT 60.242 43.478 0.00 0.00 35.79 5.68
456 457 3.680642 ATCGAAATCAATTCTGCCGTG 57.319 42.857 0.00 0.00 35.79 4.94
484 485 2.302157 GTCCCCGGATCTAAAATCGGAT 59.698 50.000 0.73 0.00 44.69 4.18
500 501 4.271816 ATAGAGTCCGCGCGGCTG 62.272 66.667 42.78 21.39 34.68 4.85
516 517 1.145759 GCTGACGATGCGAAATCCGA 61.146 55.000 0.00 0.00 41.76 4.55
517 518 1.491670 CTGACGATGCGAAATCCGAT 58.508 50.000 0.00 0.00 41.76 4.18
546 547 1.785208 AGCCGATCTAGGGTTAGGGTA 59.215 52.381 0.00 0.00 39.23 3.69
547 548 2.178544 AGCCGATCTAGGGTTAGGGTAA 59.821 50.000 0.00 0.00 39.23 2.85
548 549 2.561858 GCCGATCTAGGGTTAGGGTAAG 59.438 54.545 0.00 0.00 0.00 2.34
553 554 4.533001 TCTAGGGTTAGGGTAAGGAGAC 57.467 50.000 0.00 0.00 0.00 3.36
654 656 0.987848 GCGCGATAACGAGAGACGAG 60.988 60.000 12.10 0.00 45.77 4.18
662 667 0.177141 ACGAGAGACGAGGAGAGAGG 59.823 60.000 0.00 0.00 45.77 3.69
722 727 1.388547 TTTCTTCGCAGTGCCAGTTT 58.611 45.000 10.11 0.00 0.00 2.66
723 728 2.248280 TTCTTCGCAGTGCCAGTTTA 57.752 45.000 10.11 0.00 0.00 2.01
725 730 2.778299 TCTTCGCAGTGCCAGTTTATT 58.222 42.857 10.11 0.00 0.00 1.40
726 731 3.932822 TCTTCGCAGTGCCAGTTTATTA 58.067 40.909 10.11 0.00 0.00 0.98
742 748 1.901654 ATTACGTGGCGGCTAACCCA 61.902 55.000 11.43 0.00 0.00 4.51
747 753 2.281900 GGCGGCTAACCCACAACA 60.282 61.111 0.00 0.00 0.00 3.33
748 754 1.899534 GGCGGCTAACCCACAACAA 60.900 57.895 0.00 0.00 0.00 2.83
750 756 0.109319 GCGGCTAACCCACAACAATG 60.109 55.000 0.00 0.00 0.00 2.82
840 851 0.834612 TAATCCATCCCGGCTCGTTT 59.165 50.000 0.00 0.00 33.14 3.60
1185 1199 9.116067 TCTGTATTTTATTGAGGATTTTACGGG 57.884 33.333 0.00 0.00 0.00 5.28
1201 1215 3.680842 GGGTGGACGCGATAAATCT 57.319 52.632 15.93 0.00 0.00 2.40
1227 1241 0.762418 TTCTTGCCGGGAACTGAAGA 59.238 50.000 3.37 0.00 36.31 2.87
1301 1318 3.249189 AGGGGCCGCTGACTTCAA 61.249 61.111 23.51 0.00 0.00 2.69
1350 1367 2.368439 GCTGAAATGGGCTACATGACA 58.632 47.619 0.00 0.00 40.44 3.58
1391 1408 3.834532 TGCACTTGCTGAACCTGTGTTC 61.835 50.000 2.33 0.00 43.88 3.18
1525 1543 3.087370 GGACTTCTTGGCCAAGGTTAT 57.913 47.619 38.60 24.34 45.54 1.89
1528 1546 2.170166 CTTCTTGGCCAAGGTTATGCA 58.830 47.619 38.60 19.59 38.88 3.96
1529 1547 1.838112 TCTTGGCCAAGGTTATGCAG 58.162 50.000 38.60 16.54 38.88 4.41
1533 1551 1.256812 GGCCAAGGTTATGCAGTGTT 58.743 50.000 0.00 0.00 0.00 3.32
1543 1561 7.054491 AGGTTATGCAGTGTTTTGAAGATTT 57.946 32.000 0.00 0.00 0.00 2.17
1544 1562 6.925165 AGGTTATGCAGTGTTTTGAAGATTTG 59.075 34.615 0.00 0.00 0.00 2.32
1545 1563 6.922957 GGTTATGCAGTGTTTTGAAGATTTGA 59.077 34.615 0.00 0.00 0.00 2.69
1690 1718 2.494059 GGGTCACATATGGATCGGTTG 58.506 52.381 7.80 0.00 0.00 3.77
1708 1736 0.464036 TGAGGTAGGCTGTTATGGCG 59.536 55.000 0.00 0.00 37.59 5.69
1718 1746 1.265095 CTGTTATGGCGTGCATGGATC 59.735 52.381 8.27 0.00 0.00 3.36
1743 1771 8.112822 TCCTGATTTTTCATAATTGGGACACTA 58.887 33.333 0.00 0.00 39.29 2.74
1758 1786 7.305813 TGGGACACTAACAAGTTACAAGATA 57.694 36.000 0.00 0.00 0.00 1.98
1763 1791 6.145048 ACACTAACAAGTTACAAGATACGCAC 59.855 38.462 0.00 0.00 0.00 5.34
1770 1798 5.416083 AGTTACAAGATACGCACTGCATTA 58.584 37.500 1.11 0.00 0.00 1.90
1776 1804 4.369182 AGATACGCACTGCATTAGTTACC 58.631 43.478 1.11 0.00 37.60 2.85
1853 1885 7.025520 AGCATATCCTATAGAAGGCATTGTT 57.974 36.000 0.00 0.00 46.10 2.83
1854 1886 6.883217 AGCATATCCTATAGAAGGCATTGTTG 59.117 38.462 0.00 0.00 46.10 3.33
1858 1890 4.473196 TCCTATAGAAGGCATTGTTGGTCA 59.527 41.667 0.00 0.00 46.10 4.02
1879 1911 2.584492 AAGGTACGGTGCGGTTATAC 57.416 50.000 0.00 0.00 0.00 1.47
1880 1912 0.746659 AGGTACGGTGCGGTTATACC 59.253 55.000 0.00 0.00 36.35 2.73
1881 1913 0.746659 GGTACGGTGCGGTTATACCT 59.253 55.000 0.00 0.00 35.66 3.08
1882 1914 1.136891 GGTACGGTGCGGTTATACCTT 59.863 52.381 0.00 0.00 35.66 3.50
1883 1915 2.360801 GGTACGGTGCGGTTATACCTTA 59.639 50.000 0.00 0.00 35.66 2.69
1884 1916 3.005791 GGTACGGTGCGGTTATACCTTAT 59.994 47.826 0.00 0.00 35.66 1.73
1885 1917 3.102052 ACGGTGCGGTTATACCTTATG 57.898 47.619 0.00 0.00 35.66 1.90
1886 1918 2.694628 ACGGTGCGGTTATACCTTATGA 59.305 45.455 0.00 0.00 35.66 2.15
1887 1919 3.132646 ACGGTGCGGTTATACCTTATGAA 59.867 43.478 0.00 0.00 35.66 2.57
1888 1920 3.739300 CGGTGCGGTTATACCTTATGAAG 59.261 47.826 0.00 0.00 35.66 3.02
1889 1921 4.500205 CGGTGCGGTTATACCTTATGAAGA 60.500 45.833 0.00 0.00 35.66 2.87
1890 1922 5.548406 GGTGCGGTTATACCTTATGAAGAT 58.452 41.667 0.00 0.00 35.66 2.40
1891 1923 6.570957 CGGTGCGGTTATACCTTATGAAGATA 60.571 42.308 0.00 0.00 35.66 1.98
1892 1924 7.156673 GGTGCGGTTATACCTTATGAAGATAA 58.843 38.462 0.00 0.00 35.66 1.75
1893 1925 7.331193 GGTGCGGTTATACCTTATGAAGATAAG 59.669 40.741 0.00 0.00 40.57 1.73
1894 1926 8.086522 GTGCGGTTATACCTTATGAAGATAAGA 58.913 37.037 0.00 0.00 42.66 2.10
1895 1927 8.086522 TGCGGTTATACCTTATGAAGATAAGAC 58.913 37.037 0.00 0.00 42.66 3.01
1896 1928 8.305317 GCGGTTATACCTTATGAAGATAAGACT 58.695 37.037 0.00 0.00 42.66 3.24
1973 2005 5.805728 TGAAACCATCTAAGTCCTTTCCTC 58.194 41.667 0.00 0.00 0.00 3.71
2018 2122 8.715191 ATGATCTTCTTCATTACTTGTCTCAC 57.285 34.615 0.00 0.00 32.38 3.51
2057 2161 9.159254 TGTCAGGTATCAAAGGATATCAAGTAT 57.841 33.333 4.83 0.00 39.21 2.12
2181 2285 7.555087 TCTTGGTTCACTTGATTTTTGTGATT 58.445 30.769 0.00 0.00 39.92 2.57
2209 2313 7.064490 ACGTTATGAAAATGGCAAATTCATTCC 59.936 33.333 26.04 18.50 42.23 3.01
2225 2329 8.482852 AATTCATTCCCTTTATTACCCATGAG 57.517 34.615 0.00 0.00 0.00 2.90
2244 2348 5.094429 TGAGTGTCGTCATGAAAATGTTG 57.906 39.130 0.00 0.00 0.00 3.33
2261 2365 8.504812 AAAATGTTGCTGGACAATTTTAACTT 57.495 26.923 0.00 0.00 41.27 2.66
2293 2397 3.620966 GCATGATAAGCAGGTCTATCCCC 60.621 52.174 0.00 0.00 36.75 4.81
2324 2428 0.476338 TGCCCTGTTTAGTTCAGCCA 59.524 50.000 0.00 0.00 0.00 4.75
2350 2454 7.032580 TCTCCATGTTTATGCGTTTAATTTGG 58.967 34.615 0.00 0.00 32.79 3.28
2376 2480 7.989947 ACCAAGGACCAATACTCTTATTCTA 57.010 36.000 0.00 0.00 0.00 2.10
2388 2492 6.633325 ACTCTTATTCTATATGGGCAGCAT 57.367 37.500 0.00 0.00 0.00 3.79
2389 2493 6.413052 ACTCTTATTCTATATGGGCAGCATG 58.587 40.000 0.00 0.00 40.87 4.06
2580 2684 8.893219 TGATCTTAACACATTCCTAGCTATTG 57.107 34.615 0.00 0.00 0.00 1.90
2597 2701 6.857777 GCTATTGCTGATCTATTCACTGTT 57.142 37.500 0.00 0.00 36.03 3.16
2617 2721 9.462174 CACTGTTATGTTTTTATGCTTTTCAGA 57.538 29.630 0.00 0.00 0.00 3.27
2759 2863 5.182190 TGCATTTGAAATTTCTGCATGCATT 59.818 32.000 29.16 12.38 38.46 3.56
2814 2918 6.051179 ACACCATCCTCCTAGTTAAAAGTC 57.949 41.667 0.00 0.00 0.00 3.01
2819 2923 5.007385 TCCTCCTAGTTAAAAGTCGATGC 57.993 43.478 0.00 0.00 0.00 3.91
2913 3017 6.648879 TGCCCTTATTAAGTATTGAATGCC 57.351 37.500 2.88 0.00 0.00 4.40
2915 3019 6.265196 TGCCCTTATTAAGTATTGAATGCCAG 59.735 38.462 2.88 0.00 0.00 4.85
2942 3046 6.918067 TTACCTCTCTGAATCTCTTCAACA 57.082 37.500 0.00 0.00 40.78 3.33
2975 3079 3.460857 AAATGCTCGTATGTCTCCCTC 57.539 47.619 0.00 0.00 0.00 4.30
2984 3088 1.755179 ATGTCTCCCTCGCCAATTTG 58.245 50.000 0.00 0.00 0.00 2.32
3065 3169 7.098477 CCAAAGTTCAAATGCATCTATTTGGA 58.902 34.615 21.87 9.27 44.32 3.53
3111 3215 8.131731 GGATGTTTATTCCTTGACTAGAAATGC 58.868 37.037 0.00 0.00 0.00 3.56
3517 3621 2.842462 TGCGTCCCTGGTCAGTGT 60.842 61.111 0.00 0.00 0.00 3.55
3541 3645 6.513806 TGTTATCTTACACAATGCATTGCT 57.486 33.333 33.94 23.06 41.38 3.91
3576 3680 1.337167 GGGTTTTCCTGCTGCAATGTC 60.337 52.381 3.02 0.00 40.46 3.06
3598 3702 3.207474 TCTACGACCGCTTGTAGTTTC 57.793 47.619 5.27 0.00 39.25 2.78
3600 3704 1.779569 ACGACCGCTTGTAGTTTCTG 58.220 50.000 0.00 0.00 27.00 3.02
3782 3886 2.235650 AGTGTGTGTAGATGCATCAGCT 59.764 45.455 27.81 10.67 42.74 4.24
3791 3895 7.814587 TGTGTAGATGCATCAGCTATATTGTAC 59.185 37.037 27.81 16.51 42.74 2.90
3792 3896 8.031864 GTGTAGATGCATCAGCTATATTGTACT 58.968 37.037 27.81 5.10 42.74 2.73
3793 3897 8.246871 TGTAGATGCATCAGCTATATTGTACTC 58.753 37.037 27.81 0.00 42.74 2.59
3794 3898 6.638610 AGATGCATCAGCTATATTGTACTCC 58.361 40.000 27.81 0.00 42.74 3.85
3795 3899 5.152623 TGCATCAGCTATATTGTACTCCC 57.847 43.478 0.00 0.00 42.74 4.30
3796 3900 4.020218 TGCATCAGCTATATTGTACTCCCC 60.020 45.833 0.00 0.00 42.74 4.81
3797 3901 4.624125 GCATCAGCTATATTGTACTCCCCC 60.624 50.000 0.00 0.00 37.91 5.40
3813 3917 2.651382 CCCCCGTCCTAAAATAAGGG 57.349 55.000 0.00 0.00 37.24 3.95
3814 3918 1.848388 CCCCCGTCCTAAAATAAGGGT 59.152 52.381 0.00 0.00 37.24 4.34
3815 3919 2.158711 CCCCCGTCCTAAAATAAGGGTC 60.159 54.545 0.00 0.00 37.24 4.46
3816 3920 2.775960 CCCCGTCCTAAAATAAGGGTCT 59.224 50.000 0.00 0.00 37.24 3.85
3817 3921 3.181457 CCCCGTCCTAAAATAAGGGTCTC 60.181 52.174 0.00 0.00 37.24 3.36
3818 3922 3.453353 CCCGTCCTAAAATAAGGGTCTCA 59.547 47.826 0.00 0.00 37.24 3.27
3819 3923 4.080751 CCCGTCCTAAAATAAGGGTCTCAA 60.081 45.833 0.00 0.00 37.24 3.02
3820 3924 4.874396 CCGTCCTAAAATAAGGGTCTCAAC 59.126 45.833 0.00 0.00 37.24 3.18
3821 3925 4.874396 CGTCCTAAAATAAGGGTCTCAACC 59.126 45.833 0.00 0.00 45.65 3.77
3822 3926 5.338137 CGTCCTAAAATAAGGGTCTCAACCT 60.338 44.000 0.00 0.00 45.66 3.50
3832 3936 6.511017 AAGGGTCTCAACCTTAGTAAAACT 57.489 37.500 0.00 0.00 46.14 2.66
3833 3937 6.511017 AGGGTCTCAACCTTAGTAAAACTT 57.489 37.500 0.00 0.00 45.66 2.66
3834 3938 6.907961 AGGGTCTCAACCTTAGTAAAACTTT 58.092 36.000 0.00 0.00 45.66 2.66
3835 3939 6.771267 AGGGTCTCAACCTTAGTAAAACTTTG 59.229 38.462 0.00 0.00 45.66 2.77
3836 3940 6.544931 GGGTCTCAACCTTAGTAAAACTTTGT 59.455 38.462 0.00 0.00 45.66 2.83
3837 3941 7.716560 GGGTCTCAACCTTAGTAAAACTTTGTA 59.283 37.037 0.00 0.00 45.66 2.41
3838 3942 8.554528 GGTCTCAACCTTAGTAAAACTTTGTAC 58.445 37.037 0.00 0.00 42.80 2.90
3839 3943 9.322773 GTCTCAACCTTAGTAAAACTTTGTACT 57.677 33.333 0.00 0.00 34.89 2.73
3872 3976 9.965824 AACATAAAGTTGAGACACTTATTTTGG 57.034 29.630 0.00 0.00 39.49 3.28
3873 3977 8.576442 ACATAAAGTTGAGACACTTATTTTGGG 58.424 33.333 0.00 0.00 35.87 4.12
3874 3978 8.792633 CATAAAGTTGAGACACTTATTTTGGGA 58.207 33.333 0.00 0.00 35.87 4.37
3875 3979 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3876 3980 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3877 3981 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3878 3982 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3879 3983 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3880 3984 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3881 3985 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3882 3986 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3883 3987 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
3884 3988 3.268595 ACTTATTTTGGGACGGAGGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
3885 3989 4.475747 ACTTATTTTGGGACGGAGGGAATA 59.524 41.667 0.00 0.00 0.00 1.75
3893 3997 3.236896 GGACGGAGGGAATAGAACCATA 58.763 50.000 0.00 0.00 0.00 2.74
3950 4054 0.586319 AGCGTTCCATGTCAACAACG 59.414 50.000 9.00 9.00 43.52 4.10
4180 4290 1.600916 GACGAGGTGGGCAGCTTTT 60.601 57.895 0.00 0.00 39.57 2.27
4184 4294 1.075301 AGGTGGGCAGCTTTTGGTT 60.075 52.632 0.00 0.00 35.28 3.67
4185 4295 0.690744 AGGTGGGCAGCTTTTGGTTT 60.691 50.000 0.00 0.00 35.28 3.27
4194 4306 2.689983 CAGCTTTTGGTTTGACTCCACT 59.310 45.455 0.00 0.00 34.45 4.00
4243 4355 2.018544 CCAAGACGCGGACACAAAA 58.981 52.632 12.47 0.00 0.00 2.44
4248 4360 2.994849 AGACGCGGACACAAAATTTTC 58.005 42.857 12.47 0.00 0.00 2.29
4296 4408 3.073798 TGAGGTAGAGAATTTTGGGTGCA 59.926 43.478 0.00 0.00 0.00 4.57
4338 4450 2.024414 GGAACTCACTGTGCAAAAGGT 58.976 47.619 2.12 0.00 0.00 3.50
4439 4551 5.163447 CGTATGAAGACTGATGGGTCCTTTA 60.163 44.000 0.00 0.00 36.95 1.85
4441 4553 5.165961 TGAAGACTGATGGGTCCTTTAAG 57.834 43.478 0.00 0.00 36.95 1.85
4442 4554 3.636153 AGACTGATGGGTCCTTTAAGC 57.364 47.619 0.00 0.00 36.95 3.09
4473 4586 3.574396 TGAGGTTTGTTTTGGTGTTGTCA 59.426 39.130 0.00 0.00 0.00 3.58
4489 4602 1.535028 TGTCAGCAAACATGGCTTACG 59.465 47.619 0.00 0.00 40.23 3.18
4491 4604 1.535028 TCAGCAAACATGGCTTACGTG 59.465 47.619 0.00 0.00 40.23 4.49
4504 4618 2.159324 GCTTACGTGTACTGTACTCCCC 60.159 54.545 17.98 4.08 0.00 4.81
4544 4659 7.834881 TCAAGTTCTAGGTTTCTCTAAGTCA 57.165 36.000 0.00 0.00 0.00 3.41
4546 4661 8.701895 TCAAGTTCTAGGTTTCTCTAAGTCAAA 58.298 33.333 0.00 0.00 0.00 2.69
4585 4700 4.463186 TCAAGTCTACTGAAGTTCTAGGCC 59.537 45.833 4.17 0.00 0.00 5.19
4606 4790 5.451520 GGCCTGTCATAATTGAGTACGTACT 60.452 44.000 27.71 27.71 39.71 2.73
4614 4798 5.840940 AATTGAGTACGTACTTGCTTGTC 57.159 39.130 27.96 14.57 36.50 3.18
4642 5056 3.177228 AGTCTGGTCTAGAAATGTGGCT 58.823 45.455 0.00 0.00 37.12 4.75
4651 5065 2.522185 AGAAATGTGGCTGCACATCTT 58.478 42.857 14.83 11.91 44.19 2.40
4658 5072 4.081406 TGTGGCTGCACATCTTTAAATCT 58.919 39.130 0.50 0.00 0.00 2.40
4678 5092 2.722629 CTGAAGCTGCACAAAATTCGTG 59.277 45.455 1.02 4.06 37.43 4.35
4779 5193 2.158449 CAGTTTTCCAGCGCTCACTAAG 59.842 50.000 7.13 0.00 0.00 2.18
4927 5619 1.737236 GGGCGCCCAAAAATCAATTTC 59.263 47.619 40.73 7.27 35.81 2.17
4930 5622 2.810852 GCGCCCAAAAATCAATTTCCAA 59.189 40.909 0.00 0.00 0.00 3.53
4935 5627 5.221204 GCCCAAAAATCAATTTCCAAAGCAA 60.221 36.000 0.00 0.00 0.00 3.91
4941 5633 9.612066 AAAAATCAATTTCCAAAGCAAGTAAGA 57.388 25.926 0.00 0.00 0.00 2.10
4943 5635 6.707440 TCAATTTCCAAAGCAAGTAAGACA 57.293 33.333 0.00 0.00 0.00 3.41
4944 5636 7.288810 TCAATTTCCAAAGCAAGTAAGACAT 57.711 32.000 0.00 0.00 0.00 3.06
4945 5637 7.147312 TCAATTTCCAAAGCAAGTAAGACATG 58.853 34.615 0.00 0.00 0.00 3.21
4946 5638 6.655078 ATTTCCAAAGCAAGTAAGACATGT 57.345 33.333 0.00 0.00 0.00 3.21
4947 5639 7.759489 ATTTCCAAAGCAAGTAAGACATGTA 57.241 32.000 0.00 0.00 0.00 2.29
4948 5640 6.554334 TTCCAAAGCAAGTAAGACATGTAC 57.446 37.500 0.00 0.00 0.00 2.90
4949 5641 5.616270 TCCAAAGCAAGTAAGACATGTACA 58.384 37.500 0.00 0.00 0.00 2.90
4950 5642 6.058833 TCCAAAGCAAGTAAGACATGTACAA 58.941 36.000 0.00 0.00 0.00 2.41
4951 5643 6.204688 TCCAAAGCAAGTAAGACATGTACAAG 59.795 38.462 0.00 0.00 0.00 3.16
4952 5644 5.613358 AAGCAAGTAAGACATGTACAAGC 57.387 39.130 0.00 2.19 0.00 4.01
4953 5645 4.003648 AGCAAGTAAGACATGTACAAGCC 58.996 43.478 0.00 0.00 0.00 4.35
4954 5646 4.003648 GCAAGTAAGACATGTACAAGCCT 58.996 43.478 0.00 0.00 0.00 4.58
4955 5647 4.455877 GCAAGTAAGACATGTACAAGCCTT 59.544 41.667 0.00 1.72 0.00 4.35
4956 5648 5.048713 GCAAGTAAGACATGTACAAGCCTTT 60.049 40.000 4.98 0.00 0.00 3.11
4957 5649 6.515035 GCAAGTAAGACATGTACAAGCCTTTT 60.515 38.462 4.98 0.00 0.00 2.27
4958 5650 7.425606 CAAGTAAGACATGTACAAGCCTTTTT 58.574 34.615 4.98 0.00 0.00 1.94
4982 5674 4.864704 TTTTGAGGGAAAAGGCATGTAC 57.135 40.909 0.00 0.00 0.00 2.90
4983 5675 3.517296 TTGAGGGAAAAGGCATGTACA 57.483 42.857 0.00 0.00 0.00 2.90
4984 5676 3.517296 TGAGGGAAAAGGCATGTACAA 57.483 42.857 0.00 0.00 0.00 2.41
4985 5677 3.420893 TGAGGGAAAAGGCATGTACAAG 58.579 45.455 0.00 0.00 0.00 3.16
4986 5678 2.164422 GAGGGAAAAGGCATGTACAAGC 59.836 50.000 14.57 14.57 0.00 4.01
4997 5689 5.499139 GCATGTACAAGCCTAAAATAGCA 57.501 39.130 12.00 0.00 0.00 3.49
4998 5690 5.890334 GCATGTACAAGCCTAAAATAGCAA 58.110 37.500 12.00 0.00 0.00 3.91
4999 5691 5.973565 GCATGTACAAGCCTAAAATAGCAAG 59.026 40.000 12.00 0.00 0.00 4.01
5000 5692 5.560966 TGTACAAGCCTAAAATAGCAAGC 57.439 39.130 0.00 0.00 0.00 4.01
5001 5693 5.007034 TGTACAAGCCTAAAATAGCAAGCA 58.993 37.500 0.00 0.00 0.00 3.91
5002 5694 5.652014 TGTACAAGCCTAAAATAGCAAGCAT 59.348 36.000 0.00 0.00 0.00 3.79
5003 5695 6.826231 TGTACAAGCCTAAAATAGCAAGCATA 59.174 34.615 0.00 0.00 0.00 3.14
5004 5696 6.966534 ACAAGCCTAAAATAGCAAGCATAT 57.033 33.333 0.00 0.00 0.00 1.78
5005 5697 7.352079 ACAAGCCTAAAATAGCAAGCATATT 57.648 32.000 0.00 0.00 0.00 1.28
5006 5698 7.205297 ACAAGCCTAAAATAGCAAGCATATTG 58.795 34.615 0.00 0.00 0.00 1.90
5007 5699 6.336842 AGCCTAAAATAGCAAGCATATTGG 57.663 37.500 0.00 0.00 0.00 3.16
5008 5700 5.244626 AGCCTAAAATAGCAAGCATATTGGG 59.755 40.000 0.00 0.00 0.00 4.12
5009 5701 5.567423 GCCTAAAATAGCAAGCATATTGGGG 60.567 44.000 0.00 2.14 0.00 4.96
5010 5702 5.774690 CCTAAAATAGCAAGCATATTGGGGA 59.225 40.000 0.00 0.00 0.00 4.81
5011 5703 6.267471 CCTAAAATAGCAAGCATATTGGGGAA 59.733 38.462 0.00 0.00 0.00 3.97
5012 5704 5.796424 AAATAGCAAGCATATTGGGGAAG 57.204 39.130 0.00 0.00 0.00 3.46
5013 5705 2.077687 AGCAAGCATATTGGGGAAGG 57.922 50.000 0.00 0.00 0.00 3.46
5014 5706 1.570501 AGCAAGCATATTGGGGAAGGA 59.429 47.619 0.00 0.00 0.00 3.36
5015 5707 1.959282 GCAAGCATATTGGGGAAGGAG 59.041 52.381 0.00 0.00 0.00 3.69
5016 5708 2.423373 GCAAGCATATTGGGGAAGGAGA 60.423 50.000 0.00 0.00 0.00 3.71
5017 5709 3.484407 CAAGCATATTGGGGAAGGAGAG 58.516 50.000 0.00 0.00 0.00 3.20
5018 5710 3.066208 AGCATATTGGGGAAGGAGAGA 57.934 47.619 0.00 0.00 0.00 3.10
5019 5711 2.708325 AGCATATTGGGGAAGGAGAGAC 59.292 50.000 0.00 0.00 0.00 3.36
5020 5712 2.548920 GCATATTGGGGAAGGAGAGACG 60.549 54.545 0.00 0.00 0.00 4.18
5021 5713 2.840640 TATTGGGGAAGGAGAGACGA 57.159 50.000 0.00 0.00 0.00 4.20
5022 5714 2.182516 ATTGGGGAAGGAGAGACGAT 57.817 50.000 0.00 0.00 0.00 3.73
5023 5715 1.195115 TTGGGGAAGGAGAGACGATG 58.805 55.000 0.00 0.00 0.00 3.84
5024 5716 0.335019 TGGGGAAGGAGAGACGATGA 59.665 55.000 0.00 0.00 0.00 2.92
5025 5717 1.036707 GGGGAAGGAGAGACGATGAG 58.963 60.000 0.00 0.00 0.00 2.90
5026 5718 1.036707 GGGAAGGAGAGACGATGAGG 58.963 60.000 0.00 0.00 0.00 3.86
5027 5719 1.410365 GGGAAGGAGAGACGATGAGGA 60.410 57.143 0.00 0.00 0.00 3.71
5028 5720 1.953686 GGAAGGAGAGACGATGAGGAG 59.046 57.143 0.00 0.00 0.00 3.69
5029 5721 1.336755 GAAGGAGAGACGATGAGGAGC 59.663 57.143 0.00 0.00 0.00 4.70
5030 5722 0.550914 AGGAGAGACGATGAGGAGCT 59.449 55.000 0.00 0.00 0.00 4.09
5031 5723 0.951558 GGAGAGACGATGAGGAGCTC 59.048 60.000 4.71 4.71 0.00 4.09
5032 5724 1.674359 GAGAGACGATGAGGAGCTCA 58.326 55.000 17.19 0.00 44.99 4.26
5033 5725 2.020720 GAGAGACGATGAGGAGCTCAA 58.979 52.381 17.19 0.14 44.04 3.02
5034 5726 2.023673 AGAGACGATGAGGAGCTCAAG 58.976 52.381 17.19 2.10 44.04 3.02
5035 5727 2.020720 GAGACGATGAGGAGCTCAAGA 58.979 52.381 17.19 0.00 44.04 3.02
5036 5728 2.622942 GAGACGATGAGGAGCTCAAGAT 59.377 50.000 17.19 3.03 44.04 2.40
5037 5729 2.361757 AGACGATGAGGAGCTCAAGATG 59.638 50.000 17.19 2.82 44.04 2.90
5038 5730 1.411977 ACGATGAGGAGCTCAAGATGG 59.588 52.381 17.19 7.24 44.04 3.51
5039 5731 1.270199 CGATGAGGAGCTCAAGATGGG 60.270 57.143 17.19 0.00 44.04 4.00
5040 5732 1.072015 GATGAGGAGCTCAAGATGGGG 59.928 57.143 17.19 0.00 44.04 4.96
5041 5733 0.984961 TGAGGAGCTCAAGATGGGGG 60.985 60.000 17.19 0.00 37.57 5.40
5042 5734 0.692419 GAGGAGCTCAAGATGGGGGA 60.692 60.000 17.19 0.00 0.00 4.81
5043 5735 0.253347 AGGAGCTCAAGATGGGGGAA 60.253 55.000 17.19 0.00 0.00 3.97
5044 5736 0.182299 GGAGCTCAAGATGGGGGAAG 59.818 60.000 17.19 0.00 0.00 3.46
5045 5737 0.182299 GAGCTCAAGATGGGGGAAGG 59.818 60.000 9.40 0.00 0.00 3.46
5046 5738 0.253347 AGCTCAAGATGGGGGAAGGA 60.253 55.000 0.00 0.00 0.00 3.36
5047 5739 0.182299 GCTCAAGATGGGGGAAGGAG 59.818 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.883142 CTCCATAGTGAAATCTCTAAAAAGACT 57.117 33.333 0.00 0.00 0.00 3.24
9 10 9.660180 ACTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 33.57 3.01
16 17 9.000486 CGTATGTACTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
17 18 7.720074 TCGTATGTACTCCATAGTGAAATCTCT 59.280 37.037 0.00 0.00 36.71 3.10
18 19 7.872881 TCGTATGTACTCCATAGTGAAATCTC 58.127 38.462 0.00 0.00 36.71 2.75
19 20 7.818997 TCGTATGTACTCCATAGTGAAATCT 57.181 36.000 0.00 0.00 36.71 2.40
20 21 8.916654 CATTCGTATGTACTCCATAGTGAAATC 58.083 37.037 0.00 0.00 36.71 2.17
21 22 8.421784 ACATTCGTATGTACTCCATAGTGAAAT 58.578 33.333 5.81 0.00 43.12 2.17
22 23 7.778083 ACATTCGTATGTACTCCATAGTGAAA 58.222 34.615 5.81 0.00 43.12 2.69
23 24 7.342769 ACATTCGTATGTACTCCATAGTGAA 57.657 36.000 5.81 0.00 43.12 3.18
24 25 6.954487 ACATTCGTATGTACTCCATAGTGA 57.046 37.500 5.81 0.00 43.12 3.41
30 31 9.729281 TGTCTATATACATTCGTATGTACTCCA 57.271 33.333 15.94 6.05 46.91 3.86
90 91 9.881529 CGTCTGTTCCTAAATACTCTATAAGTC 57.118 37.037 0.00 0.00 39.55 3.01
91 92 8.848182 CCGTCTGTTCCTAAATACTCTATAAGT 58.152 37.037 0.00 0.00 42.33 2.24
92 93 9.064706 TCCGTCTGTTCCTAAATACTCTATAAG 57.935 37.037 0.00 0.00 0.00 1.73
93 94 8.985315 TCCGTCTGTTCCTAAATACTCTATAA 57.015 34.615 0.00 0.00 0.00 0.98
94 95 8.216423 ACTCCGTCTGTTCCTAAATACTCTATA 58.784 37.037 0.00 0.00 0.00 1.31
95 96 7.061688 ACTCCGTCTGTTCCTAAATACTCTAT 58.938 38.462 0.00 0.00 0.00 1.98
96 97 6.421485 ACTCCGTCTGTTCCTAAATACTCTA 58.579 40.000 0.00 0.00 0.00 2.43
97 98 5.262804 ACTCCGTCTGTTCCTAAATACTCT 58.737 41.667 0.00 0.00 0.00 3.24
98 99 5.579564 ACTCCGTCTGTTCCTAAATACTC 57.420 43.478 0.00 0.00 0.00 2.59
99 100 6.421485 TCTACTCCGTCTGTTCCTAAATACT 58.579 40.000 0.00 0.00 0.00 2.12
100 101 6.690194 TCTACTCCGTCTGTTCCTAAATAC 57.310 41.667 0.00 0.00 0.00 1.89
101 102 6.888632 AGTTCTACTCCGTCTGTTCCTAAATA 59.111 38.462 0.00 0.00 0.00 1.40
102 103 5.715753 AGTTCTACTCCGTCTGTTCCTAAAT 59.284 40.000 0.00 0.00 0.00 1.40
103 104 5.075493 AGTTCTACTCCGTCTGTTCCTAAA 58.925 41.667 0.00 0.00 0.00 1.85
104 105 4.660168 AGTTCTACTCCGTCTGTTCCTAA 58.340 43.478 0.00 0.00 0.00 2.69
105 106 4.298103 AGTTCTACTCCGTCTGTTCCTA 57.702 45.455 0.00 0.00 0.00 2.94
106 107 3.157750 AGTTCTACTCCGTCTGTTCCT 57.842 47.619 0.00 0.00 0.00 3.36
107 108 3.938289 AAGTTCTACTCCGTCTGTTCC 57.062 47.619 0.00 0.00 0.00 3.62
108 109 7.701501 CCTATTAAAGTTCTACTCCGTCTGTTC 59.298 40.741 0.00 0.00 0.00 3.18
109 110 7.395489 TCCTATTAAAGTTCTACTCCGTCTGTT 59.605 37.037 0.00 0.00 0.00 3.16
110 111 6.888632 TCCTATTAAAGTTCTACTCCGTCTGT 59.111 38.462 0.00 0.00 0.00 3.41
111 112 7.148120 TGTCCTATTAAAGTTCTACTCCGTCTG 60.148 40.741 0.00 0.00 0.00 3.51
112 113 6.888632 TGTCCTATTAAAGTTCTACTCCGTCT 59.111 38.462 0.00 0.00 0.00 4.18
113 114 7.093322 TGTCCTATTAAAGTTCTACTCCGTC 57.907 40.000 0.00 0.00 0.00 4.79
114 115 7.490000 CATGTCCTATTAAAGTTCTACTCCGT 58.510 38.462 0.00 0.00 0.00 4.69
115 116 6.421202 GCATGTCCTATTAAAGTTCTACTCCG 59.579 42.308 0.00 0.00 0.00 4.63
116 117 7.272978 TGCATGTCCTATTAAAGTTCTACTCC 58.727 38.462 0.00 0.00 0.00 3.85
117 118 8.604890 GTTGCATGTCCTATTAAAGTTCTACTC 58.395 37.037 0.00 0.00 0.00 2.59
118 119 8.100791 TGTTGCATGTCCTATTAAAGTTCTACT 58.899 33.333 0.00 0.00 0.00 2.57
119 120 8.263940 TGTTGCATGTCCTATTAAAGTTCTAC 57.736 34.615 0.00 0.00 0.00 2.59
125 126 7.968405 GGTAAGTTGTTGCATGTCCTATTAAAG 59.032 37.037 0.00 0.00 0.00 1.85
135 136 0.596082 GCCGGTAAGTTGTTGCATGT 59.404 50.000 1.90 0.00 0.00 3.21
138 139 0.948678 GAAGCCGGTAAGTTGTTGCA 59.051 50.000 1.90 0.00 0.00 4.08
139 140 1.197036 GAGAAGCCGGTAAGTTGTTGC 59.803 52.381 1.90 0.00 0.00 4.17
140 141 2.480419 CTGAGAAGCCGGTAAGTTGTTG 59.520 50.000 1.90 0.00 0.00 3.33
160 161 0.469917 CCCCATGGTATCTCAACGCT 59.530 55.000 11.73 0.00 0.00 5.07
214 215 0.883153 TCGACGAGGATGGAAACGAA 59.117 50.000 0.00 0.00 0.00 3.85
318 319 3.052036 GCTGTGATTTTTGCGTTGATGT 58.948 40.909 0.00 0.00 0.00 3.06
322 323 5.401972 TCTTATTGCTGTGATTTTTGCGTTG 59.598 36.000 0.00 0.00 0.00 4.10
338 339 4.357142 TCCGTCGACAGTTATCTTATTGC 58.643 43.478 17.16 0.00 0.00 3.56
340 341 7.043590 CGAATTTCCGTCGACAGTTATCTTATT 60.044 37.037 17.16 2.34 41.02 1.40
341 342 6.417044 CGAATTTCCGTCGACAGTTATCTTAT 59.583 38.462 17.16 0.00 41.02 1.73
360 361 1.600485 GTTGACCGGTGTGTCGAATTT 59.400 47.619 14.63 0.00 38.11 1.82
371 372 2.279935 TGCCTAATTTGTTGACCGGT 57.720 45.000 6.92 6.92 0.00 5.28
375 376 5.051307 GGTTTTCGTTGCCTAATTTGTTGAC 60.051 40.000 0.00 0.00 0.00 3.18
379 380 3.243941 GGGGTTTTCGTTGCCTAATTTGT 60.244 43.478 0.00 0.00 0.00 2.83
380 381 3.322369 GGGGTTTTCGTTGCCTAATTTG 58.678 45.455 0.00 0.00 0.00 2.32
409 410 3.137728 AGGGAATTATGGTTTCGTAGGGG 59.862 47.826 0.00 0.00 0.00 4.79
413 414 5.341872 TCGAAGGGAATTATGGTTTCGTA 57.658 39.130 4.65 0.00 38.68 3.43
414 415 4.210724 TCGAAGGGAATTATGGTTTCGT 57.789 40.909 4.65 0.00 38.68 3.85
422 423 7.801716 TTGATTTCGATTCGAAGGGAATTAT 57.198 32.000 19.69 9.99 46.43 1.28
443 444 3.876914 GACATATTCCACGGCAGAATTGA 59.123 43.478 0.00 0.00 35.59 2.57
456 457 4.903045 TTTAGATCCGGGGACATATTCC 57.097 45.455 0.00 0.00 45.00 3.01
498 499 1.453524 GATCGGATTTCGCATCGTCAG 59.546 52.381 0.00 0.00 39.05 3.51
500 501 0.784778 GGATCGGATTTCGCATCGTC 59.215 55.000 0.00 0.00 39.05 4.20
527 528 2.299326 TACCCTAACCCTAGATCGGC 57.701 55.000 0.00 0.00 0.00 5.54
532 533 3.117738 CGTCTCCTTACCCTAACCCTAGA 60.118 52.174 0.00 0.00 0.00 2.43
533 534 3.117738 TCGTCTCCTTACCCTAACCCTAG 60.118 52.174 0.00 0.00 0.00 3.02
546 547 1.096416 GGTGAGTCGATCGTCTCCTT 58.904 55.000 30.37 5.82 31.09 3.36
547 548 0.253610 AGGTGAGTCGATCGTCTCCT 59.746 55.000 30.37 24.36 32.88 3.69
548 549 0.378962 CAGGTGAGTCGATCGTCTCC 59.621 60.000 30.37 22.90 31.09 3.71
553 554 0.863538 CGCTTCAGGTGAGTCGATCG 60.864 60.000 9.36 9.36 0.00 3.69
638 640 2.471818 TCTCCTCGTCTCTCGTTATCG 58.528 52.381 0.00 0.00 40.80 2.92
654 656 2.579738 GTGCGTTCCCCTCTCTCC 59.420 66.667 0.00 0.00 0.00 3.71
698 703 0.951558 GGCACTGCGAAGAAAAGGAA 59.048 50.000 0.00 0.00 0.00 3.36
700 705 0.239347 CTGGCACTGCGAAGAAAAGG 59.761 55.000 0.00 0.00 0.00 3.11
701 706 0.947244 ACTGGCACTGCGAAGAAAAG 59.053 50.000 0.00 0.00 0.00 2.27
712 717 2.081462 GCCACGTAATAAACTGGCACT 58.919 47.619 4.68 0.00 44.86 4.40
722 727 0.104671 GGGTTAGCCGCCACGTAATA 59.895 55.000 0.00 0.00 34.97 0.98
723 728 1.153309 GGGTTAGCCGCCACGTAAT 60.153 57.895 0.00 0.00 34.97 1.89
725 730 2.996153 TGGGTTAGCCGCCACGTA 60.996 61.111 0.00 0.00 34.97 3.57
726 731 4.692475 GTGGGTTAGCCGCCACGT 62.692 66.667 2.10 0.00 34.97 4.49
742 748 2.806745 CGAGTCTGACCCACATTGTTGT 60.807 50.000 3.76 0.00 36.15 3.32
747 753 1.276421 CTTCCGAGTCTGACCCACATT 59.724 52.381 3.76 0.00 0.00 2.71
748 754 0.898320 CTTCCGAGTCTGACCCACAT 59.102 55.000 3.76 0.00 0.00 3.21
750 756 1.079750 GCTTCCGAGTCTGACCCAC 60.080 63.158 3.76 0.00 0.00 4.61
1185 1199 7.908601 AGAATTAAAAAGATTTATCGCGTCCAC 59.091 33.333 5.77 0.00 31.33 4.02
1201 1215 4.585162 TCAGTTCCCGGCAAGAATTAAAAA 59.415 37.500 0.00 0.00 0.00 1.94
1301 1318 3.206964 TCATAAGAGCTCTCATCGTCGT 58.793 45.455 18.55 0.49 0.00 4.34
1391 1408 2.102925 ACCCCAAACAGCACAAAATCAG 59.897 45.455 0.00 0.00 0.00 2.90
1525 1543 5.125257 TCACTCAAATCTTCAAAACACTGCA 59.875 36.000 0.00 0.00 0.00 4.41
1528 1546 9.090692 CAAAATCACTCAAATCTTCAAAACACT 57.909 29.630 0.00 0.00 0.00 3.55
1529 1547 8.330302 CCAAAATCACTCAAATCTTCAAAACAC 58.670 33.333 0.00 0.00 0.00 3.32
1533 1551 6.819284 AGCCAAAATCACTCAAATCTTCAAA 58.181 32.000 0.00 0.00 0.00 2.69
1543 1561 1.001487 CGTGCAAGCCAAAATCACTCA 60.001 47.619 0.00 0.00 0.00 3.41
1544 1562 1.689959 CGTGCAAGCCAAAATCACTC 58.310 50.000 0.00 0.00 0.00 3.51
1545 1563 0.318955 GCGTGCAAGCCAAAATCACT 60.319 50.000 14.16 0.00 0.00 3.41
1690 1718 0.464452 ACGCCATAACAGCCTACCTC 59.536 55.000 0.00 0.00 0.00 3.85
1708 1736 4.724074 TGAAAAATCAGGATCCATGCAC 57.276 40.909 15.82 0.00 0.00 4.57
1718 1746 7.174107 AGTGTCCCAATTATGAAAAATCAGG 57.826 36.000 0.00 0.00 0.00 3.86
1743 1771 4.084013 GCAGTGCGTATCTTGTAACTTGTT 60.084 41.667 0.00 0.00 0.00 2.83
1758 1786 2.465860 TGGTAACTAATGCAGTGCGT 57.534 45.000 11.20 7.46 37.63 5.24
1763 1791 9.494271 AACATCTACATATGGTAACTAATGCAG 57.506 33.333 7.80 0.00 34.12 4.41
1853 1885 0.881159 CGCACCGTACCTTTTGACCA 60.881 55.000 0.00 0.00 0.00 4.02
1854 1886 1.571215 CCGCACCGTACCTTTTGACC 61.571 60.000 0.00 0.00 0.00 4.02
1858 1890 2.477845 ATAACCGCACCGTACCTTTT 57.522 45.000 0.00 0.00 0.00 2.27
1998 2102 9.482627 AAGTAAGTGAGACAAGTAATGAAGAAG 57.517 33.333 0.00 0.00 0.00 2.85
2057 2161 4.458989 GGAACTATTGGTTGATTGTCAGCA 59.541 41.667 0.00 0.00 38.41 4.41
2156 2260 6.522625 TCACAAAAATCAAGTGAACCAAGA 57.477 33.333 0.00 0.00 39.15 3.02
2157 2261 7.492020 TGAATCACAAAAATCAAGTGAACCAAG 59.508 33.333 0.00 0.00 44.47 3.61
2158 2262 7.277539 GTGAATCACAAAAATCAAGTGAACCAA 59.722 33.333 8.74 0.00 44.47 3.67
2159 2263 6.756074 GTGAATCACAAAAATCAAGTGAACCA 59.244 34.615 8.74 0.00 44.47 3.67
2181 2285 6.450545 TGAATTTGCCATTTTCATAACGTGA 58.549 32.000 0.00 0.00 34.25 4.35
2209 2313 4.766375 ACGACACTCATGGGTAATAAAGG 58.234 43.478 0.00 0.00 0.00 3.11
2225 2329 3.665409 CAGCAACATTTTCATGACGACAC 59.335 43.478 0.00 0.00 34.11 3.67
2244 2348 6.447162 ACTTGCTAAGTTAAAATTGTCCAGC 58.553 36.000 0.00 0.00 39.04 4.85
2261 2365 4.124970 CTGCTTATCATGCTGACTTGCTA 58.875 43.478 0.00 0.00 0.00 3.49
2285 2389 1.344953 ATGCACGCTTGGGGGATAGA 61.345 55.000 0.00 0.00 0.00 1.98
2293 2397 3.376078 AGGGCAATGCACGCTTGG 61.376 61.111 7.79 0.00 36.86 3.61
2324 2428 7.706179 CCAAATTAAACGCATAAACATGGAGAT 59.294 33.333 0.00 0.00 0.00 2.75
2350 2454 7.793036 AGAATAAGAGTATTGGTCCTTGGTAC 58.207 38.462 0.00 0.00 29.69 3.34
2399 2503 1.317613 GGTGCACATGTCCTTGTCAA 58.682 50.000 20.43 0.00 0.00 3.18
2595 2699 9.899226 AGACTCTGAAAAGCATAAAAACATAAC 57.101 29.630 0.00 0.00 0.00 1.89
2617 2721 7.304497 AGTCACAATAACCAGAAAGTAGACT 57.696 36.000 0.00 0.00 0.00 3.24
2814 2918 4.056050 ACTTTTAGGCTAATACGGCATCG 58.944 43.478 7.96 0.00 43.02 3.84
2819 2923 4.809426 CACCAGACTTTTAGGCTAATACGG 59.191 45.833 7.96 6.05 26.27 4.02
2915 3019 7.118496 TGAAGAGATTCAGAGAGGTAATTCC 57.882 40.000 0.00 0.00 0.00 3.01
2921 3025 5.815233 TTGTTGAAGAGATTCAGAGAGGT 57.185 39.130 0.00 0.00 31.87 3.85
2942 3046 7.387948 ACATACGAGCATTTAGACAAAGACTTT 59.612 33.333 0.00 0.00 0.00 2.66
2975 3079 3.057174 TGTTAGGCCTTAACAAATTGGCG 60.057 43.478 12.58 0.00 46.50 5.69
3089 3193 8.897752 AGATGCATTTCTAGTCAAGGAATAAAC 58.102 33.333 0.00 0.00 31.01 2.01
3295 3399 8.358148 GTGCTAATTATAGGCTAGTAAGTGACA 58.642 37.037 0.00 0.43 0.00 3.58
3392 3496 2.869233 GCAGAAAGCACCAGAAAACA 57.131 45.000 0.00 0.00 44.79 2.83
3517 3621 6.807720 CAGCAATGCATTGTGTAAGATAACAA 59.192 34.615 33.67 0.00 40.36 2.83
3541 3645 5.010282 GGAAAACCCAAGAAGAATCTAGCA 58.990 41.667 0.00 0.00 33.77 3.49
3576 3680 2.846039 ACTACAAGCGGTCGTAGATG 57.154 50.000 18.97 0.00 40.67 2.90
3598 3702 6.925165 AGAATAGTCAACCAAAATGCAAACAG 59.075 34.615 0.00 0.00 0.00 3.16
3600 3704 6.701400 ACAGAATAGTCAACCAAAATGCAAAC 59.299 34.615 0.00 0.00 0.00 2.93
3752 3856 5.299028 TGCATCTACACACACTTCACATTTT 59.701 36.000 0.00 0.00 0.00 1.82
3794 3898 1.848388 ACCCTTATTTTAGGACGGGGG 59.152 52.381 0.00 0.00 37.50 5.40
3795 3899 2.775960 AGACCCTTATTTTAGGACGGGG 59.224 50.000 0.00 0.00 37.50 5.73
3796 3900 3.453353 TGAGACCCTTATTTTAGGACGGG 59.547 47.826 0.00 0.00 37.50 5.28
3797 3901 4.748277 TGAGACCCTTATTTTAGGACGG 57.252 45.455 0.00 0.00 37.50 4.79
3798 3902 4.874396 GGTTGAGACCCTTATTTTAGGACG 59.126 45.833 0.00 0.00 40.25 4.79
3812 3916 7.563888 ACAAAGTTTTACTAAGGTTGAGACC 57.436 36.000 0.00 0.00 46.92 3.85
3813 3917 9.322773 AGTACAAAGTTTTACTAAGGTTGAGAC 57.677 33.333 0.00 0.00 0.00 3.36
3846 3950 9.965824 CCAAAATAAGTGTCTCAACTTTATGTT 57.034 29.630 0.00 0.00 40.77 2.71
3847 3951 8.576442 CCCAAAATAAGTGTCTCAACTTTATGT 58.424 33.333 0.00 0.00 40.77 2.29
3848 3952 8.792633 TCCCAAAATAAGTGTCTCAACTTTATG 58.207 33.333 0.00 0.00 40.77 1.90
3849 3953 8.793592 GTCCCAAAATAAGTGTCTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
3850 3954 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
3851 3955 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3852 3956 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3853 3957 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3854 3958 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3855 3959 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3856 3960 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3857 3961 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3858 3962 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3859 3963 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3860 3964 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3861 3965 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3862 3966 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
3863 3967 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
3864 3968 4.722781 TCTATTCCCTCCGTCCCAAAATAA 59.277 41.667 0.00 0.00 0.00 1.40
3865 3969 4.300345 TCTATTCCCTCCGTCCCAAAATA 58.700 43.478 0.00 0.00 0.00 1.40
3866 3970 3.120108 TCTATTCCCTCCGTCCCAAAAT 58.880 45.455 0.00 0.00 0.00 1.82
3867 3971 2.553464 TCTATTCCCTCCGTCCCAAAA 58.447 47.619 0.00 0.00 0.00 2.44
3868 3972 2.237893 GTTCTATTCCCTCCGTCCCAAA 59.762 50.000 0.00 0.00 0.00 3.28
3869 3973 1.835531 GTTCTATTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
3870 3974 1.492764 GTTCTATTCCCTCCGTCCCA 58.507 55.000 0.00 0.00 0.00 4.37
3871 3975 0.757512 GGTTCTATTCCCTCCGTCCC 59.242 60.000 0.00 0.00 0.00 4.46
3872 3976 1.492764 TGGTTCTATTCCCTCCGTCC 58.507 55.000 0.00 0.00 0.00 4.79
3873 3977 3.896272 ACTATGGTTCTATTCCCTCCGTC 59.104 47.826 0.00 0.00 0.00 4.79
3874 3978 3.641906 CACTATGGTTCTATTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
3875 3979 3.895656 TCACTATGGTTCTATTCCCTCCG 59.104 47.826 0.00 0.00 0.00 4.63
3876 3980 5.782845 AGATCACTATGGTTCTATTCCCTCC 59.217 44.000 0.00 0.00 0.00 4.30
3877 3981 6.268847 ACAGATCACTATGGTTCTATTCCCTC 59.731 42.308 0.00 0.00 0.00 4.30
3878 3982 6.042552 CACAGATCACTATGGTTCTATTCCCT 59.957 42.308 0.00 0.00 0.00 4.20
3879 3983 6.042093 TCACAGATCACTATGGTTCTATTCCC 59.958 42.308 0.00 0.00 0.00 3.97
3880 3984 7.055667 TCACAGATCACTATGGTTCTATTCC 57.944 40.000 0.00 0.00 0.00 3.01
3881 3985 7.721402 ACTCACAGATCACTATGGTTCTATTC 58.279 38.462 0.00 0.00 0.00 1.75
3882 3986 7.667575 ACTCACAGATCACTATGGTTCTATT 57.332 36.000 0.00 0.00 0.00 1.73
3883 3987 7.343057 TCAACTCACAGATCACTATGGTTCTAT 59.657 37.037 0.00 0.00 0.00 1.98
3884 3988 6.663523 TCAACTCACAGATCACTATGGTTCTA 59.336 38.462 0.00 0.00 0.00 2.10
3885 3989 5.481824 TCAACTCACAGATCACTATGGTTCT 59.518 40.000 0.00 0.00 0.00 3.01
3893 3997 2.366590 TGTGCTCAACTCACAGATCACT 59.633 45.455 0.00 0.00 39.29 3.41
3950 4054 3.209410 AGTTAATCTAGCCAGCATGCAC 58.791 45.455 21.98 8.95 31.97 4.57
4114 4224 6.351456 GCCAGGATATAATTCCTCCAGTACTC 60.351 46.154 0.00 0.00 44.54 2.59
4180 4290 2.917933 CACAAGAGTGGAGTCAAACCA 58.082 47.619 0.00 0.00 42.13 3.67
4194 4306 4.415881 AATGTGACACCACTACACAAGA 57.584 40.909 2.45 0.00 45.34 3.02
4243 4355 8.046294 TGGCACAAGTACGTATATTTGAAAAT 57.954 30.769 18.33 0.00 33.41 1.82
4248 4360 4.331443 TGCTGGCACAAGTACGTATATTTG 59.669 41.667 0.00 7.17 38.70 2.32
4296 4408 5.051816 CCACAATTGTTCAAACAGAAGCAT 58.948 37.500 8.77 0.00 40.50 3.79
4338 4450 4.771577 ACAAAATATGTTCACCAGCCATCA 59.228 37.500 0.00 0.00 40.06 3.07
4441 4553 1.251251 ACAAACCTCAAGCAGATGGC 58.749 50.000 0.00 0.00 45.30 4.40
4442 4554 4.053295 CAAAACAAACCTCAAGCAGATGG 58.947 43.478 0.00 0.00 0.00 3.51
4444 4556 3.706086 ACCAAAACAAACCTCAAGCAGAT 59.294 39.130 0.00 0.00 0.00 2.90
4446 4558 3.189285 CACCAAAACAAACCTCAAGCAG 58.811 45.455 0.00 0.00 0.00 4.24
4453 4566 3.616317 GCTGACAACACCAAAACAAACCT 60.616 43.478 0.00 0.00 0.00 3.50
4473 4586 1.604604 ACACGTAAGCCATGTTTGCT 58.395 45.000 0.00 0.00 45.62 3.91
4504 4618 9.860898 CTAGAACTTGAATTAATTTGGAAAGGG 57.139 33.333 1.43 0.00 0.00 3.95
4521 4635 8.766151 GTTTGACTTAGAGAAACCTAGAACTTG 58.234 37.037 0.00 0.00 0.00 3.16
4562 4677 4.463186 GGCCTAGAACTTCAGTAGACTTGA 59.537 45.833 0.00 0.00 0.00 3.02
4585 4700 6.752351 AGCAAGTACGTACTCAATTATGACAG 59.248 38.462 27.51 7.88 34.99 3.51
4614 4798 1.669604 TCTAGACCAGACTAGCTGCG 58.330 55.000 0.00 0.00 43.50 5.18
4642 5056 5.620654 GCAGCTTCAGATTTAAAGATGTGCA 60.621 40.000 16.68 0.00 40.20 4.57
4651 5065 6.363088 CGAATTTTGTGCAGCTTCAGATTTAA 59.637 34.615 0.00 0.00 0.00 1.52
4658 5072 2.730069 CACGAATTTTGTGCAGCTTCA 58.270 42.857 3.87 0.00 0.00 3.02
4712 5126 6.064060 TGGACATTGACTGTTTCATCTTTCT 58.936 36.000 0.00 0.00 38.54 2.52
4720 5134 3.425359 CGATGCTGGACATTGACTGTTTC 60.425 47.826 0.00 0.00 42.12 2.78
4779 5193 7.489160 ACACCTTGGTTAAGAATGAACTTTTC 58.511 34.615 0.00 0.00 35.92 2.29
4870 5285 2.285154 CGACATCCGTACGAAAGGC 58.715 57.895 18.76 6.71 0.00 4.35
4885 5575 2.181021 CTGTCCTGCCCGTACGAC 59.819 66.667 18.76 9.15 0.00 4.34
4894 5584 2.747855 CGCCCTTTCCTGTCCTGC 60.748 66.667 0.00 0.00 0.00 4.85
4927 5619 5.940192 TGTACATGTCTTACTTGCTTTGG 57.060 39.130 0.00 0.00 0.00 3.28
4930 5622 4.455877 GGCTTGTACATGTCTTACTTGCTT 59.544 41.667 0.00 0.00 0.00 3.91
4960 5652 4.651503 TGTACATGCCTTTTCCCTCAAAAA 59.348 37.500 0.00 0.00 33.40 1.94
4961 5653 4.219115 TGTACATGCCTTTTCCCTCAAAA 58.781 39.130 0.00 0.00 32.77 2.44
4962 5654 3.838565 TGTACATGCCTTTTCCCTCAAA 58.161 40.909 0.00 0.00 0.00 2.69
4963 5655 3.517296 TGTACATGCCTTTTCCCTCAA 57.483 42.857 0.00 0.00 0.00 3.02
4964 5656 3.420893 CTTGTACATGCCTTTTCCCTCA 58.579 45.455 0.00 0.00 0.00 3.86
4965 5657 2.164422 GCTTGTACATGCCTTTTCCCTC 59.836 50.000 20.17 0.00 0.00 4.30
4966 5658 2.171003 GCTTGTACATGCCTTTTCCCT 58.829 47.619 20.17 0.00 0.00 4.20
4967 5659 1.204704 GGCTTGTACATGCCTTTTCCC 59.795 52.381 34.23 14.41 45.21 3.97
4968 5660 2.654749 GGCTTGTACATGCCTTTTCC 57.345 50.000 34.23 15.00 45.21 3.13
4975 5667 5.499139 TGCTATTTTAGGCTTGTACATGC 57.501 39.130 22.10 22.10 0.00 4.06
4976 5668 5.973565 GCTTGCTATTTTAGGCTTGTACATG 59.026 40.000 0.00 0.00 0.00 3.21
4977 5669 5.652014 TGCTTGCTATTTTAGGCTTGTACAT 59.348 36.000 0.00 0.00 0.00 2.29
4978 5670 5.007034 TGCTTGCTATTTTAGGCTTGTACA 58.993 37.500 0.00 0.00 0.00 2.90
4979 5671 5.560966 TGCTTGCTATTTTAGGCTTGTAC 57.439 39.130 0.00 0.00 0.00 2.90
4980 5672 8.352201 CAATATGCTTGCTATTTTAGGCTTGTA 58.648 33.333 0.00 0.00 0.00 2.41
4981 5673 6.966534 ATATGCTTGCTATTTTAGGCTTGT 57.033 33.333 0.00 0.00 0.00 3.16
4982 5674 6.643770 CCAATATGCTTGCTATTTTAGGCTTG 59.356 38.462 0.00 0.00 0.00 4.01
4983 5675 6.239402 CCCAATATGCTTGCTATTTTAGGCTT 60.239 38.462 0.00 0.00 0.00 4.35
4984 5676 5.244626 CCCAATATGCTTGCTATTTTAGGCT 59.755 40.000 0.00 0.00 0.00 4.58
4985 5677 5.473039 CCCAATATGCTTGCTATTTTAGGC 58.527 41.667 0.00 0.00 0.00 3.93
4986 5678 5.774690 TCCCCAATATGCTTGCTATTTTAGG 59.225 40.000 0.00 0.00 0.00 2.69
4987 5679 6.899393 TCCCCAATATGCTTGCTATTTTAG 57.101 37.500 0.00 0.00 0.00 1.85
4988 5680 6.267471 CCTTCCCCAATATGCTTGCTATTTTA 59.733 38.462 0.00 0.00 0.00 1.52
4989 5681 5.070847 CCTTCCCCAATATGCTTGCTATTTT 59.929 40.000 0.00 0.00 0.00 1.82
4990 5682 4.590222 CCTTCCCCAATATGCTTGCTATTT 59.410 41.667 0.00 0.00 0.00 1.40
4991 5683 4.140947 TCCTTCCCCAATATGCTTGCTATT 60.141 41.667 0.00 0.00 0.00 1.73
4992 5684 3.398967 TCCTTCCCCAATATGCTTGCTAT 59.601 43.478 0.00 0.00 0.00 2.97
4993 5685 2.782925 TCCTTCCCCAATATGCTTGCTA 59.217 45.455 0.00 0.00 0.00 3.49
4994 5686 1.570501 TCCTTCCCCAATATGCTTGCT 59.429 47.619 0.00 0.00 0.00 3.91
4995 5687 1.959282 CTCCTTCCCCAATATGCTTGC 59.041 52.381 0.00 0.00 0.00 4.01
4996 5688 3.137176 TCTCTCCTTCCCCAATATGCTTG 59.863 47.826 0.00 0.00 0.00 4.01
4997 5689 3.137360 GTCTCTCCTTCCCCAATATGCTT 59.863 47.826 0.00 0.00 0.00 3.91
4998 5690 2.708325 GTCTCTCCTTCCCCAATATGCT 59.292 50.000 0.00 0.00 0.00 3.79
4999 5691 2.548920 CGTCTCTCCTTCCCCAATATGC 60.549 54.545 0.00 0.00 0.00 3.14
5000 5692 2.965831 TCGTCTCTCCTTCCCCAATATG 59.034 50.000 0.00 0.00 0.00 1.78
5001 5693 3.330126 TCGTCTCTCCTTCCCCAATAT 57.670 47.619 0.00 0.00 0.00 1.28
5002 5694 2.840640 TCGTCTCTCCTTCCCCAATA 57.159 50.000 0.00 0.00 0.00 1.90
5003 5695 1.765314 CATCGTCTCTCCTTCCCCAAT 59.235 52.381 0.00 0.00 0.00 3.16
5004 5696 1.195115 CATCGTCTCTCCTTCCCCAA 58.805 55.000 0.00 0.00 0.00 4.12
5005 5697 0.335019 TCATCGTCTCTCCTTCCCCA 59.665 55.000 0.00 0.00 0.00 4.96
5006 5698 1.036707 CTCATCGTCTCTCCTTCCCC 58.963 60.000 0.00 0.00 0.00 4.81
5007 5699 1.036707 CCTCATCGTCTCTCCTTCCC 58.963 60.000 0.00 0.00 0.00 3.97
5008 5700 1.953686 CTCCTCATCGTCTCTCCTTCC 59.046 57.143 0.00 0.00 0.00 3.46
5009 5701 1.336755 GCTCCTCATCGTCTCTCCTTC 59.663 57.143 0.00 0.00 0.00 3.46
5010 5702 1.064017 AGCTCCTCATCGTCTCTCCTT 60.064 52.381 0.00 0.00 0.00 3.36
5011 5703 0.550914 AGCTCCTCATCGTCTCTCCT 59.449 55.000 0.00 0.00 0.00 3.69
5012 5704 0.951558 GAGCTCCTCATCGTCTCTCC 59.048 60.000 0.87 0.00 0.00 3.71
5013 5705 1.674359 TGAGCTCCTCATCGTCTCTC 58.326 55.000 12.15 0.00 35.39 3.20
5014 5706 2.023673 CTTGAGCTCCTCATCGTCTCT 58.976 52.381 12.15 0.00 40.39 3.10
5015 5707 2.020720 TCTTGAGCTCCTCATCGTCTC 58.979 52.381 12.15 0.00 40.39 3.36
5016 5708 2.136298 TCTTGAGCTCCTCATCGTCT 57.864 50.000 12.15 0.00 40.39 4.18
5017 5709 2.545532 CCATCTTGAGCTCCTCATCGTC 60.546 54.545 12.15 0.00 40.39 4.20
5018 5710 1.411977 CCATCTTGAGCTCCTCATCGT 59.588 52.381 12.15 0.00 40.39 3.73
5019 5711 1.270199 CCCATCTTGAGCTCCTCATCG 60.270 57.143 12.15 0.00 40.39 3.84
5020 5712 1.072015 CCCCATCTTGAGCTCCTCATC 59.928 57.143 12.15 0.00 40.39 2.92
5021 5713 1.138568 CCCCATCTTGAGCTCCTCAT 58.861 55.000 12.15 0.00 40.39 2.90
5022 5714 0.984961 CCCCCATCTTGAGCTCCTCA 60.985 60.000 12.15 0.00 38.87 3.86
5023 5715 0.692419 TCCCCCATCTTGAGCTCCTC 60.692 60.000 12.15 0.00 0.00 3.71
5024 5716 0.253347 TTCCCCCATCTTGAGCTCCT 60.253 55.000 12.15 0.00 0.00 3.69
5025 5717 0.182299 CTTCCCCCATCTTGAGCTCC 59.818 60.000 12.15 0.00 0.00 4.70
5026 5718 0.182299 CCTTCCCCCATCTTGAGCTC 59.818 60.000 6.82 6.82 0.00 4.09
5027 5719 0.253347 TCCTTCCCCCATCTTGAGCT 60.253 55.000 0.00 0.00 0.00 4.09
5028 5720 0.182299 CTCCTTCCCCCATCTTGAGC 59.818 60.000 0.00 0.00 0.00 4.26
5029 5721 1.885049 TCTCCTTCCCCCATCTTGAG 58.115 55.000 0.00 0.00 0.00 3.02
5030 5722 2.200081 CTTCTCCTTCCCCCATCTTGA 58.800 52.381 0.00 0.00 0.00 3.02
5031 5723 2.200081 TCTTCTCCTTCCCCCATCTTG 58.800 52.381 0.00 0.00 0.00 3.02
5032 5724 2.668850 TCTTCTCCTTCCCCCATCTT 57.331 50.000 0.00 0.00 0.00 2.40
5033 5725 2.668850 TTCTTCTCCTTCCCCCATCT 57.331 50.000 0.00 0.00 0.00 2.90
5034 5726 2.685224 GCTTTCTTCTCCTTCCCCCATC 60.685 54.545 0.00 0.00 0.00 3.51
5035 5727 1.286257 GCTTTCTTCTCCTTCCCCCAT 59.714 52.381 0.00 0.00 0.00 4.00
5036 5728 0.698818 GCTTTCTTCTCCTTCCCCCA 59.301 55.000 0.00 0.00 0.00 4.96
5037 5729 0.995803 AGCTTTCTTCTCCTTCCCCC 59.004 55.000 0.00 0.00 0.00 5.40
5038 5730 1.340502 CCAGCTTTCTTCTCCTTCCCC 60.341 57.143 0.00 0.00 0.00 4.81
5039 5731 1.952839 GCCAGCTTTCTTCTCCTTCCC 60.953 57.143 0.00 0.00 0.00 3.97
5040 5732 1.271597 TGCCAGCTTTCTTCTCCTTCC 60.272 52.381 0.00 0.00 0.00 3.46
5041 5733 2.083002 CTGCCAGCTTTCTTCTCCTTC 58.917 52.381 0.00 0.00 0.00 3.46
5042 5734 1.885790 GCTGCCAGCTTTCTTCTCCTT 60.886 52.381 10.04 0.00 38.45 3.36
5043 5735 0.322366 GCTGCCAGCTTTCTTCTCCT 60.322 55.000 10.04 0.00 38.45 3.69
5044 5736 1.642952 CGCTGCCAGCTTTCTTCTCC 61.643 60.000 15.80 0.00 39.60 3.71
5045 5737 0.671781 TCGCTGCCAGCTTTCTTCTC 60.672 55.000 15.80 0.00 39.60 2.87
5046 5738 0.952984 GTCGCTGCCAGCTTTCTTCT 60.953 55.000 15.80 0.00 39.60 2.85
5047 5739 1.499502 GTCGCTGCCAGCTTTCTTC 59.500 57.895 15.80 0.00 39.60 2.87
5072 5764 1.204113 CCTGGTGGCTTCTCTTCCCT 61.204 60.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.