Multiple sequence alignment - TraesCS7B01G211900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G211900 chr7B 100.000 4120 0 0 853 4972 387674637 387670518 0.000000e+00 7609.0
1 TraesCS7B01G211900 chr7B 100.000 482 0 0 1 482 387675489 387675008 0.000000e+00 891.0
2 TraesCS7B01G211900 chr7B 92.917 480 31 3 1 479 644200967 644201444 0.000000e+00 695.0
3 TraesCS7B01G211900 chr7B 92.531 482 35 1 1 482 695345151 695344671 0.000000e+00 689.0
4 TraesCS7B01G211900 chr7B 90.456 482 45 1 1 482 153565688 153565208 7.020000e-178 634.0
5 TraesCS7B01G211900 chr7A 96.361 3188 75 19 855 4012 442980770 442977594 0.000000e+00 5206.0
6 TraesCS7B01G211900 chr7A 96.076 892 31 3 4083 4972 442977455 442976566 0.000000e+00 1450.0
7 TraesCS7B01G211900 chr7D 97.201 2465 49 7 1563 4012 390932380 390929921 0.000000e+00 4152.0
8 TraesCS7B01G211900 chr7D 97.741 664 13 2 855 1518 390933049 390932388 0.000000e+00 1142.0
9 TraesCS7B01G211900 chr7D 92.022 539 40 2 4083 4618 390929692 390929154 0.000000e+00 754.0
10 TraesCS7B01G211900 chr6B 96.881 481 14 1 2 482 706125734 706125255 0.000000e+00 804.0
11 TraesCS7B01G211900 chr6B 93.333 480 31 1 1 480 578488776 578489254 0.000000e+00 708.0
12 TraesCS7B01G211900 chr6B 91.494 482 39 2 1 482 716154151 716154630 0.000000e+00 662.0
13 TraesCS7B01G211900 chr5B 90.890 483 41 3 1 482 326902222 326902702 0.000000e+00 645.0
14 TraesCS7B01G211900 chr5B 90.871 482 43 1 1 482 355605308 355604828 0.000000e+00 645.0
15 TraesCS7B01G211900 chr4B 90.476 483 44 2 1 482 647654732 647655213 1.950000e-178 636.0
16 TraesCS7B01G211900 chr6D 89.744 78 6 2 4701 4777 70559160 70559236 1.140000e-16 99.0
17 TraesCS7B01G211900 chr4D 83.544 79 12 1 4698 4776 55351555 55351632 6.900000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G211900 chr7B 387670518 387675489 4971 True 4250 7609 100.000000 1 4972 2 chr7B.!!$R3 4971
1 TraesCS7B01G211900 chr7A 442976566 442980770 4204 True 3328 5206 96.218500 855 4972 2 chr7A.!!$R1 4117
2 TraesCS7B01G211900 chr7D 390929154 390933049 3895 True 2016 4152 95.654667 855 4618 3 chr7D.!!$R1 3763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.035458 AACAAGACGAAGCAGAGGGG 59.965 55.000 0.0 0.0 0.0 4.79 F
209 210 0.036306 GACGAAGCAGAGGGGGAAAA 59.964 55.000 0.0 0.0 0.0 2.29 F
459 460 0.250513 ATGGCGAAGGAGAGGACAAC 59.749 55.000 0.0 0.0 0.0 3.32 F
461 462 0.390472 GGCGAAGGAGAGGACAACAG 60.390 60.000 0.0 0.0 0.0 3.16 F
2205 2222 0.400213 AAGTGGGACGAATTGCCTCA 59.600 50.000 0.0 0.0 36.4 3.86 F
2736 2753 0.603065 GATGGGTGGTGGCAAAGAAC 59.397 55.000 0.0 0.0 0.0 3.01 F
3430 3461 1.067846 TCTTGATTCACGGTCTGTCGG 60.068 52.381 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1138 1146 0.614979 TTGGAAGAGGAGGAGACGGG 60.615 60.000 0.00 0.00 0.00 5.28 R
1611 1627 1.065926 CATAACAGGGCAGTGCTGAGA 60.066 52.381 16.11 0.62 0.00 3.27 R
2265 2282 1.297819 CAGCAACGCATATGCACCG 60.298 57.895 26.52 14.49 46.22 4.94 R
2451 2468 4.633126 CGGGATATGAGCCAATATCAGTTG 59.367 45.833 14.82 0.00 40.07 3.16 R
3527 3558 0.108945 GCTTTGGCATTGGAGACAGC 60.109 55.000 0.00 0.00 39.20 4.40 R
3605 3636 0.606604 GGTGCTTCTCGGTAGTTCCA 59.393 55.000 0.00 0.00 35.57 3.53 R
4811 5032 0.179032 TACACAACCACAGCCCACAG 60.179 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.893601 GGGCCTCCGCGAGCTTAC 62.894 72.222 8.23 0.00 35.02 2.34
50 51 4.893601 GGCCTCCGCGAGCTTACC 62.894 72.222 8.23 0.00 35.02 2.85
51 52 4.143333 GCCTCCGCGAGCTTACCA 62.143 66.667 8.23 0.00 0.00 3.25
52 53 2.815308 CCTCCGCGAGCTTACCAT 59.185 61.111 8.23 0.00 0.00 3.55
53 54 1.300233 CCTCCGCGAGCTTACCATC 60.300 63.158 8.23 0.00 0.00 3.51
54 55 1.658717 CTCCGCGAGCTTACCATCG 60.659 63.158 8.23 0.00 41.79 3.84
55 56 2.060004 CTCCGCGAGCTTACCATCGA 62.060 60.000 8.23 0.00 41.40 3.59
56 57 1.658717 CCGCGAGCTTACCATCGAG 60.659 63.158 8.23 0.00 41.40 4.04
57 58 1.355563 CGCGAGCTTACCATCGAGA 59.644 57.895 0.00 0.00 40.55 4.04
58 59 0.248498 CGCGAGCTTACCATCGAGAA 60.248 55.000 0.00 0.00 40.55 2.87
59 60 1.201343 GCGAGCTTACCATCGAGAAC 58.799 55.000 0.00 0.00 41.40 3.01
60 61 1.841450 CGAGCTTACCATCGAGAACC 58.159 55.000 0.00 0.00 41.40 3.62
61 62 1.405821 CGAGCTTACCATCGAGAACCT 59.594 52.381 0.00 0.00 41.40 3.50
62 63 2.541999 CGAGCTTACCATCGAGAACCTC 60.542 54.545 0.00 0.00 41.40 3.85
63 64 2.427453 GAGCTTACCATCGAGAACCTCA 59.573 50.000 0.00 0.00 0.00 3.86
64 65 2.166664 AGCTTACCATCGAGAACCTCAC 59.833 50.000 0.00 0.00 0.00 3.51
65 66 2.798680 CTTACCATCGAGAACCTCACG 58.201 52.381 0.00 0.00 0.00 4.35
66 67 2.118313 TACCATCGAGAACCTCACGA 57.882 50.000 0.00 0.00 43.00 4.35
67 68 0.811915 ACCATCGAGAACCTCACGAG 59.188 55.000 0.00 0.00 42.21 4.18
68 69 0.526524 CCATCGAGAACCTCACGAGC 60.527 60.000 0.00 0.00 42.21 5.03
69 70 0.453793 CATCGAGAACCTCACGAGCT 59.546 55.000 0.00 0.00 42.21 4.09
70 71 0.736053 ATCGAGAACCTCACGAGCTC 59.264 55.000 2.73 2.73 42.21 4.09
71 72 0.321741 TCGAGAACCTCACGAGCTCT 60.322 55.000 12.85 0.00 34.75 4.09
72 73 0.179176 CGAGAACCTCACGAGCTCTG 60.179 60.000 12.85 9.32 32.24 3.35
73 74 1.169577 GAGAACCTCACGAGCTCTGA 58.830 55.000 12.85 13.01 0.00 3.27
74 75 1.748493 GAGAACCTCACGAGCTCTGAT 59.252 52.381 12.85 0.33 0.00 2.90
75 76 1.476085 AGAACCTCACGAGCTCTGATG 59.524 52.381 12.85 13.01 0.00 3.07
76 77 0.534412 AACCTCACGAGCTCTGATGG 59.466 55.000 12.85 16.82 0.00 3.51
77 78 1.227205 CCTCACGAGCTCTGATGGC 60.227 63.158 12.85 0.00 0.00 4.40
78 79 1.227205 CTCACGAGCTCTGATGGCC 60.227 63.158 12.85 0.00 0.00 5.36
79 80 2.584418 CACGAGCTCTGATGGCCG 60.584 66.667 12.85 0.00 0.00 6.13
80 81 4.521062 ACGAGCTCTGATGGCCGC 62.521 66.667 12.85 0.00 0.00 6.53
82 83 4.212913 GAGCTCTGATGGCCGCGA 62.213 66.667 8.23 0.00 0.00 5.87
83 84 3.512223 GAGCTCTGATGGCCGCGAT 62.512 63.158 8.23 0.00 0.00 4.58
84 85 3.040763 GCTCTGATGGCCGCGATC 61.041 66.667 8.23 8.34 0.00 3.69
85 86 2.733301 CTCTGATGGCCGCGATCT 59.267 61.111 8.23 0.00 0.00 2.75
86 87 1.664017 CTCTGATGGCCGCGATCTG 60.664 63.158 8.23 14.55 0.00 2.90
87 88 2.664185 CTGATGGCCGCGATCTGG 60.664 66.667 8.23 5.91 0.00 3.86
88 89 4.240103 TGATGGCCGCGATCTGGG 62.240 66.667 8.23 0.00 0.00 4.45
94 95 2.587194 CCGCGATCTGGGCAAGAG 60.587 66.667 8.23 0.00 38.67 2.85
95 96 2.587194 CGCGATCTGGGCAAGAGG 60.587 66.667 0.00 0.00 38.67 3.69
96 97 2.203126 GCGATCTGGGCAAGAGGG 60.203 66.667 0.00 0.00 38.67 4.30
97 98 2.507944 CGATCTGGGCAAGAGGGG 59.492 66.667 0.00 0.00 38.67 4.79
98 99 2.922234 GATCTGGGCAAGAGGGGG 59.078 66.667 0.00 0.00 38.67 5.40
99 100 1.694169 GATCTGGGCAAGAGGGGGA 60.694 63.158 0.00 0.00 38.67 4.81
100 101 1.988982 GATCTGGGCAAGAGGGGGAC 61.989 65.000 0.00 0.00 38.67 4.46
114 115 3.801620 GGACCAACTTCCCCTCGA 58.198 61.111 0.00 0.00 0.00 4.04
115 116 2.063774 GGACCAACTTCCCCTCGAA 58.936 57.895 0.00 0.00 0.00 3.71
116 117 0.399075 GGACCAACTTCCCCTCGAAA 59.601 55.000 0.00 0.00 0.00 3.46
117 118 1.202842 GGACCAACTTCCCCTCGAAAA 60.203 52.381 0.00 0.00 0.00 2.29
118 119 2.578786 GACCAACTTCCCCTCGAAAAA 58.421 47.619 0.00 0.00 0.00 1.94
119 120 3.154710 GACCAACTTCCCCTCGAAAAAT 58.845 45.455 0.00 0.00 0.00 1.82
120 121 2.890945 ACCAACTTCCCCTCGAAAAATG 59.109 45.455 0.00 0.00 0.00 2.32
121 122 3.153919 CCAACTTCCCCTCGAAAAATGA 58.846 45.455 0.00 0.00 0.00 2.57
122 123 3.763897 CCAACTTCCCCTCGAAAAATGAT 59.236 43.478 0.00 0.00 0.00 2.45
123 124 4.142381 CCAACTTCCCCTCGAAAAATGATC 60.142 45.833 0.00 0.00 0.00 2.92
124 125 3.270877 ACTTCCCCTCGAAAAATGATCG 58.729 45.455 0.00 0.00 41.53 3.69
125 126 1.663695 TCCCCTCGAAAAATGATCGC 58.336 50.000 0.00 0.00 40.04 4.58
126 127 0.304705 CCCCTCGAAAAATGATCGCG 59.695 55.000 0.00 0.00 40.04 5.87
127 128 0.304705 CCCTCGAAAAATGATCGCGG 59.695 55.000 6.13 0.00 43.08 6.46
128 129 1.286501 CCTCGAAAAATGATCGCGGA 58.713 50.000 6.13 0.00 45.53 5.54
129 130 1.258982 CCTCGAAAAATGATCGCGGAG 59.741 52.381 6.13 0.00 45.53 4.63
130 131 1.927174 CTCGAAAAATGATCGCGGAGT 59.073 47.619 6.13 0.00 40.04 3.85
131 132 1.924524 TCGAAAAATGATCGCGGAGTC 59.075 47.619 6.13 2.96 40.04 3.36
132 133 1.331161 CGAAAAATGATCGCGGAGTCG 60.331 52.381 6.13 0.89 39.81 4.18
133 134 1.004927 GAAAAATGATCGCGGAGTCGG 60.005 52.381 6.13 0.00 36.79 4.79
134 135 0.174845 AAAATGATCGCGGAGTCGGA 59.825 50.000 6.13 0.00 36.79 4.55
135 136 0.249073 AAATGATCGCGGAGTCGGAG 60.249 55.000 6.13 0.00 36.79 4.63
136 137 2.076622 AATGATCGCGGAGTCGGAGG 62.077 60.000 6.13 0.00 36.79 4.30
137 138 4.632458 GATCGCGGAGTCGGAGGC 62.632 72.222 6.13 0.00 36.79 4.70
142 143 3.382832 CGGAGTCGGAGGCCACTT 61.383 66.667 5.01 0.00 0.00 3.16
143 144 2.943978 CGGAGTCGGAGGCCACTTT 61.944 63.158 5.01 0.00 0.00 2.66
144 145 1.376037 GGAGTCGGAGGCCACTTTG 60.376 63.158 5.01 0.00 0.00 2.77
145 146 1.671742 GAGTCGGAGGCCACTTTGA 59.328 57.895 5.01 0.00 0.00 2.69
146 147 0.670854 GAGTCGGAGGCCACTTTGAC 60.671 60.000 5.01 8.97 33.71 3.18
147 148 2.027625 GTCGGAGGCCACTTTGACG 61.028 63.158 5.01 0.00 0.00 4.35
148 149 2.204461 TCGGAGGCCACTTTGACGA 61.204 57.895 5.01 0.00 0.00 4.20
149 150 1.738099 CGGAGGCCACTTTGACGAG 60.738 63.158 5.01 0.00 0.00 4.18
150 151 1.376037 GGAGGCCACTTTGACGAGG 60.376 63.158 5.01 0.00 0.00 4.63
151 152 1.371558 GAGGCCACTTTGACGAGGT 59.628 57.895 5.01 0.00 0.00 3.85
152 153 0.951040 GAGGCCACTTTGACGAGGTG 60.951 60.000 5.01 0.00 0.00 4.00
154 155 3.655481 CCACTTTGACGAGGTGGC 58.345 61.111 10.85 0.00 42.91 5.01
155 156 1.966451 CCACTTTGACGAGGTGGCC 60.966 63.158 10.85 0.00 42.91 5.36
156 157 1.966451 CACTTTGACGAGGTGGCCC 60.966 63.158 0.00 0.00 0.00 5.80
157 158 2.429930 CTTTGACGAGGTGGCCCA 59.570 61.111 0.00 0.00 0.00 5.36
158 159 1.672356 CTTTGACGAGGTGGCCCAG 60.672 63.158 0.00 0.00 0.00 4.45
159 160 3.842925 TTTGACGAGGTGGCCCAGC 62.843 63.158 4.32 4.32 0.00 4.85
167 168 4.314440 GTGGCCCAGCGACACAGA 62.314 66.667 0.00 0.00 37.24 3.41
168 169 4.314440 TGGCCCAGCGACACAGAC 62.314 66.667 0.00 0.00 0.00 3.51
169 170 4.008933 GGCCCAGCGACACAGACT 62.009 66.667 0.00 0.00 0.00 3.24
170 171 2.433318 GCCCAGCGACACAGACTC 60.433 66.667 0.00 0.00 0.00 3.36
171 172 3.051210 CCCAGCGACACAGACTCA 58.949 61.111 0.00 0.00 0.00 3.41
172 173 1.367471 CCCAGCGACACAGACTCAA 59.633 57.895 0.00 0.00 0.00 3.02
173 174 0.668706 CCCAGCGACACAGACTCAAG 60.669 60.000 0.00 0.00 0.00 3.02
174 175 1.287730 CCAGCGACACAGACTCAAGC 61.288 60.000 0.00 0.00 0.00 4.01
175 176 1.372251 AGCGACACAGACTCAAGCG 60.372 57.895 0.00 0.00 0.00 4.68
176 177 3.004734 GCGACACAGACTCAAGCGC 62.005 63.158 0.00 0.00 36.12 5.92
177 178 1.661509 CGACACAGACTCAAGCGCA 60.662 57.895 11.47 0.00 0.00 6.09
178 179 1.612469 CGACACAGACTCAAGCGCAG 61.612 60.000 11.47 0.00 0.00 5.18
179 180 0.319040 GACACAGACTCAAGCGCAGA 60.319 55.000 11.47 6.24 0.00 4.26
180 181 0.319383 ACACAGACTCAAGCGCAGAG 60.319 55.000 23.16 23.16 39.04 3.35
181 182 0.038801 CACAGACTCAAGCGCAGAGA 60.039 55.000 29.11 14.91 36.91 3.10
182 183 0.676184 ACAGACTCAAGCGCAGAGAA 59.324 50.000 29.11 2.75 36.91 2.87
183 184 1.069204 ACAGACTCAAGCGCAGAGAAA 59.931 47.619 29.11 1.39 36.91 2.52
184 185 2.138320 CAGACTCAAGCGCAGAGAAAA 58.862 47.619 29.11 0.38 36.91 2.29
185 186 2.545526 CAGACTCAAGCGCAGAGAAAAA 59.454 45.455 29.11 0.00 36.91 1.94
202 203 3.971032 AAAAACAAGACGAAGCAGAGG 57.029 42.857 0.00 0.00 0.00 3.69
203 204 1.884235 AAACAAGACGAAGCAGAGGG 58.116 50.000 0.00 0.00 0.00 4.30
204 205 0.035458 AACAAGACGAAGCAGAGGGG 59.965 55.000 0.00 0.00 0.00 4.79
205 206 1.078848 CAAGACGAAGCAGAGGGGG 60.079 63.158 0.00 0.00 0.00 5.40
206 207 1.229209 AAGACGAAGCAGAGGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
207 208 0.836400 AAGACGAAGCAGAGGGGGAA 60.836 55.000 0.00 0.00 0.00 3.97
208 209 0.836400 AGACGAAGCAGAGGGGGAAA 60.836 55.000 0.00 0.00 0.00 3.13
209 210 0.036306 GACGAAGCAGAGGGGGAAAA 59.964 55.000 0.00 0.00 0.00 2.29
210 211 0.698818 ACGAAGCAGAGGGGGAAAAT 59.301 50.000 0.00 0.00 0.00 1.82
211 212 1.098050 CGAAGCAGAGGGGGAAAATG 58.902 55.000 0.00 0.00 0.00 2.32
212 213 1.478631 GAAGCAGAGGGGGAAAATGG 58.521 55.000 0.00 0.00 0.00 3.16
213 214 1.005924 GAAGCAGAGGGGGAAAATGGA 59.994 52.381 0.00 0.00 0.00 3.41
214 215 0.627986 AGCAGAGGGGGAAAATGGAG 59.372 55.000 0.00 0.00 0.00 3.86
215 216 0.396278 GCAGAGGGGGAAAATGGAGG 60.396 60.000 0.00 0.00 0.00 4.30
216 217 0.259938 CAGAGGGGGAAAATGGAGGG 59.740 60.000 0.00 0.00 0.00 4.30
217 218 1.075970 GAGGGGGAAAATGGAGGGC 60.076 63.158 0.00 0.00 0.00 5.19
218 219 2.442087 GGGGGAAAATGGAGGGCG 60.442 66.667 0.00 0.00 0.00 6.13
219 220 3.147595 GGGGAAAATGGAGGGCGC 61.148 66.667 0.00 0.00 0.00 6.53
220 221 2.362375 GGGAAAATGGAGGGCGCA 60.362 61.111 10.83 0.00 0.00 6.09
221 222 2.710902 GGGAAAATGGAGGGCGCAC 61.711 63.158 10.83 5.15 0.00 5.34
222 223 2.710902 GGAAAATGGAGGGCGCACC 61.711 63.158 5.73 10.41 40.67 5.01
234 235 2.281761 CGCACCTGGCTCCAAGTT 60.282 61.111 0.00 0.00 41.67 2.66
235 236 1.003839 CGCACCTGGCTCCAAGTTA 60.004 57.895 0.00 0.00 41.67 2.24
236 237 1.298859 CGCACCTGGCTCCAAGTTAC 61.299 60.000 0.00 0.00 41.67 2.50
237 238 1.298859 GCACCTGGCTCCAAGTTACG 61.299 60.000 0.00 0.00 40.25 3.18
238 239 0.673644 CACCTGGCTCCAAGTTACGG 60.674 60.000 0.00 0.00 0.00 4.02
239 240 1.078426 CCTGGCTCCAAGTTACGGG 60.078 63.158 0.00 0.00 0.00 5.28
240 241 1.745489 CTGGCTCCAAGTTACGGGC 60.745 63.158 0.00 0.00 0.00 6.13
241 242 2.818274 GGCTCCAAGTTACGGGCG 60.818 66.667 0.00 0.00 0.00 6.13
242 243 2.818274 GCTCCAAGTTACGGGCGG 60.818 66.667 0.00 0.00 0.00 6.13
243 244 2.818274 CTCCAAGTTACGGGCGGC 60.818 66.667 0.00 0.00 0.00 6.53
244 245 4.397832 TCCAAGTTACGGGCGGCC 62.398 66.667 20.04 20.04 0.00 6.13
299 300 4.106925 GGCTGCCCTCAGGGTGAG 62.107 72.222 12.83 9.16 46.51 3.51
300 301 4.792804 GCTGCCCTCAGGGTGAGC 62.793 72.222 17.61 17.61 46.51 4.26
301 302 3.324930 CTGCCCTCAGGGTGAGCA 61.325 66.667 12.83 1.25 46.51 4.26
302 303 3.324930 TGCCCTCAGGGTGAGCAG 61.325 66.667 12.83 0.00 46.51 4.24
303 304 4.792804 GCCCTCAGGGTGAGCAGC 62.793 72.222 12.83 0.00 46.51 5.25
304 305 3.324930 CCCTCAGGGTGAGCAGCA 61.325 66.667 0.00 0.00 42.98 4.41
305 306 2.677289 CCCTCAGGGTGAGCAGCAT 61.677 63.158 0.00 0.00 42.98 3.79
306 307 1.153208 CCTCAGGGTGAGCAGCATC 60.153 63.158 0.00 0.00 42.98 3.91
319 320 2.894387 GCATCCAGCCGAGCACTC 60.894 66.667 0.00 0.00 37.23 3.51
320 321 2.202987 CATCCAGCCGAGCACTCC 60.203 66.667 0.00 0.00 0.00 3.85
321 322 3.842923 ATCCAGCCGAGCACTCCG 61.843 66.667 0.00 0.00 0.00 4.63
329 330 4.899239 GAGCACTCCGGCGGGATG 62.899 72.222 27.98 24.08 42.83 3.51
343 344 4.489771 GATGCCACCACCGGGGAG 62.490 72.222 4.41 1.79 41.15 4.30
351 352 4.753662 CACCGGGGAGGAGGACGA 62.754 72.222 6.32 0.00 45.00 4.20
352 353 4.755507 ACCGGGGAGGAGGACGAC 62.756 72.222 6.32 0.00 45.00 4.34
355 356 4.437587 GGGGAGGAGGACGACCGA 62.438 72.222 0.00 0.00 41.83 4.69
356 357 3.139469 GGGAGGAGGACGACCGAC 61.139 72.222 0.00 0.00 41.83 4.79
357 358 2.045143 GGAGGAGGACGACCGACT 60.045 66.667 0.00 0.47 41.83 4.18
358 359 2.408241 GGAGGAGGACGACCGACTG 61.408 68.421 7.95 0.00 41.83 3.51
359 360 3.053849 GAGGAGGACGACCGACTGC 62.054 68.421 7.95 0.00 41.83 4.40
360 361 4.477975 GGAGGACGACCGACTGCG 62.478 72.222 0.00 0.00 41.83 5.18
361 362 3.429141 GAGGACGACCGACTGCGA 61.429 66.667 0.00 0.00 41.83 5.10
362 363 3.664223 GAGGACGACCGACTGCGAC 62.664 68.421 0.00 0.00 41.83 5.19
369 370 3.129502 CCGACTGCGACGGGAGTA 61.130 66.667 10.40 0.00 45.69 2.59
370 371 2.403987 CGACTGCGACGGGAGTAG 59.596 66.667 0.00 0.00 45.69 2.57
371 372 2.799371 GACTGCGACGGGAGTAGG 59.201 66.667 0.00 0.00 45.69 3.18
372 373 3.412879 GACTGCGACGGGAGTAGGC 62.413 68.421 0.00 0.00 45.69 3.93
418 419 1.729881 GCCAAAGGCGTGATGATCC 59.270 57.895 0.00 0.00 39.62 3.36
419 420 2.016961 CCAAAGGCGTGATGATCCG 58.983 57.895 0.00 0.00 0.00 4.18
420 421 0.461870 CCAAAGGCGTGATGATCCGA 60.462 55.000 7.36 0.00 0.00 4.55
421 422 0.933097 CAAAGGCGTGATGATCCGAG 59.067 55.000 7.36 0.00 0.00 4.63
422 423 0.811616 AAAGGCGTGATGATCCGAGC 60.812 55.000 7.36 2.18 0.00 5.03
423 424 2.650813 AAGGCGTGATGATCCGAGCC 62.651 60.000 12.84 12.84 44.45 4.70
424 425 3.032609 GCGTGATGATCCGAGCCG 61.033 66.667 7.36 0.00 0.00 5.52
425 426 3.032609 CGTGATGATCCGAGCCGC 61.033 66.667 0.00 0.00 0.00 6.53
426 427 2.663188 GTGATGATCCGAGCCGCC 60.663 66.667 0.00 0.00 0.00 6.13
427 428 3.928779 TGATGATCCGAGCCGCCC 61.929 66.667 0.00 0.00 0.00 6.13
428 429 4.688966 GATGATCCGAGCCGCCCC 62.689 72.222 0.00 0.00 0.00 5.80
442 443 3.099170 CCCCCACCCCAGGAGATG 61.099 72.222 0.00 0.00 0.00 2.90
450 451 3.634202 CCAGGAGATGGCGAAGGA 58.366 61.111 0.00 0.00 43.83 3.36
451 452 1.445095 CCAGGAGATGGCGAAGGAG 59.555 63.158 0.00 0.00 43.83 3.69
452 453 1.045350 CCAGGAGATGGCGAAGGAGA 61.045 60.000 0.00 0.00 43.83 3.71
453 454 0.388659 CAGGAGATGGCGAAGGAGAG 59.611 60.000 0.00 0.00 0.00 3.20
454 455 0.758685 AGGAGATGGCGAAGGAGAGG 60.759 60.000 0.00 0.00 0.00 3.69
455 456 0.757188 GGAGATGGCGAAGGAGAGGA 60.757 60.000 0.00 0.00 0.00 3.71
456 457 0.387565 GAGATGGCGAAGGAGAGGAC 59.612 60.000 0.00 0.00 0.00 3.85
457 458 0.324738 AGATGGCGAAGGAGAGGACA 60.325 55.000 0.00 0.00 0.00 4.02
458 459 0.537188 GATGGCGAAGGAGAGGACAA 59.463 55.000 0.00 0.00 0.00 3.18
459 460 0.250513 ATGGCGAAGGAGAGGACAAC 59.749 55.000 0.00 0.00 0.00 3.32
460 461 1.118965 TGGCGAAGGAGAGGACAACA 61.119 55.000 0.00 0.00 0.00 3.33
461 462 0.390472 GGCGAAGGAGAGGACAACAG 60.390 60.000 0.00 0.00 0.00 3.16
462 463 0.603569 GCGAAGGAGAGGACAACAGA 59.396 55.000 0.00 0.00 0.00 3.41
463 464 1.670380 GCGAAGGAGAGGACAACAGAC 60.670 57.143 0.00 0.00 0.00 3.51
464 465 1.067495 CGAAGGAGAGGACAACAGACC 60.067 57.143 0.00 0.00 0.00 3.85
465 466 1.276705 GAAGGAGAGGACAACAGACCC 59.723 57.143 0.00 0.00 0.00 4.46
466 467 0.900647 AGGAGAGGACAACAGACCCG 60.901 60.000 0.00 0.00 0.00 5.28
467 468 1.592223 GAGAGGACAACAGACCCGG 59.408 63.158 0.00 0.00 0.00 5.73
468 469 2.047179 GAGGACAACAGACCCGGC 60.047 66.667 0.00 0.00 0.00 6.13
469 470 3.607370 GAGGACAACAGACCCGGCC 62.607 68.421 0.00 0.00 0.00 6.13
470 471 4.717313 GGACAACAGACCCGGCCC 62.717 72.222 0.00 0.00 0.00 5.80
471 472 3.948719 GACAACAGACCCGGCCCA 61.949 66.667 0.00 0.00 0.00 5.36
472 473 3.901797 GACAACAGACCCGGCCCAG 62.902 68.421 0.00 0.00 0.00 4.45
1168 1176 1.134965 CCTCTTCCAAGACGGTAGCTG 60.135 57.143 0.00 0.00 32.27 4.24
1179 1187 4.463043 GTAGCTGACCACCCTCCT 57.537 61.111 0.00 0.00 0.00 3.69
1180 1188 2.685202 GTAGCTGACCACCCTCCTT 58.315 57.895 0.00 0.00 0.00 3.36
1526 1536 2.158726 TGCCTCGTTGTTCCTTAACCTT 60.159 45.455 0.00 0.00 34.49 3.50
1528 1538 3.317149 GCCTCGTTGTTCCTTAACCTTTT 59.683 43.478 0.00 0.00 34.49 2.27
1611 1627 2.045340 AGCCGCCGCTGGTAAATT 60.045 55.556 0.00 0.00 46.19 1.82
1738 1754 7.698836 TTACGAAGGACTGTTAACAACTTAC 57.301 36.000 10.03 7.77 0.00 2.34
2049 2066 2.091885 ACACATGGACTGGAAGGTTTGT 60.092 45.455 0.00 0.00 39.30 2.83
2205 2222 0.400213 AAGTGGGACGAATTGCCTCA 59.600 50.000 0.00 0.00 36.40 3.86
2252 2269 8.562892 CATTTCAGCCTATAATTACCTGTTCAG 58.437 37.037 0.00 0.00 0.00 3.02
2265 2282 8.779354 ATTACCTGTTCAGTAGACTCAAAATC 57.221 34.615 0.00 0.00 0.00 2.17
2450 2467 6.601217 TGTAATTTAGTGCCATGCTAATGTCA 59.399 34.615 0.00 0.00 31.27 3.58
2451 2468 4.963276 TTTAGTGCCATGCTAATGTCAC 57.037 40.909 0.00 0.00 41.87 3.67
2462 2479 7.136772 CCATGCTAATGTCACAACTGATATTG 58.863 38.462 3.67 0.00 38.36 1.90
2681 2698 5.709966 TCTATAACATGCTGTAGGTATGCG 58.290 41.667 0.00 0.00 40.86 4.73
2736 2753 0.603065 GATGGGTGGTGGCAAAGAAC 59.397 55.000 0.00 0.00 0.00 3.01
2764 2781 4.101585 CCATGAACCTGGATTAGAGCACTA 59.898 45.833 0.00 0.00 38.69 2.74
3430 3461 1.067846 TCTTGATTCACGGTCTGTCGG 60.068 52.381 0.00 0.00 0.00 4.79
3527 3558 5.125097 AGACAATGAAGCTAAATGGAAGCAG 59.875 40.000 0.00 0.00 42.62 4.24
3691 3722 5.355596 TGATTTGGAAACATTGGTGTGTTC 58.644 37.500 0.00 0.00 41.22 3.18
3692 3723 5.128499 TGATTTGGAAACATTGGTGTGTTCT 59.872 36.000 0.00 0.00 41.22 3.01
3693 3724 6.322456 TGATTTGGAAACATTGGTGTGTTCTA 59.678 34.615 0.00 0.00 41.22 2.10
3791 3822 7.176690 ACATTACTAAGTGGCTTAACATTTGCT 59.823 33.333 0.00 0.00 0.00 3.91
3852 3884 0.035439 TTTCCGGATCAAGACAGCCC 60.035 55.000 4.15 0.00 0.00 5.19
3945 3977 5.823045 ACTCCTAAGAAAGTTGTTGGTTCTG 59.177 40.000 0.00 0.00 32.03 3.02
3971 4003 3.047796 GAGAACGAAACTGCACGTCTAA 58.952 45.455 0.22 0.00 41.87 2.10
4012 4045 8.354011 CAGAGGTTTCTGTATATTCTTAACCG 57.646 38.462 0.00 0.00 44.74 4.44
4013 4046 7.438459 CAGAGGTTTCTGTATATTCTTAACCGG 59.562 40.741 0.00 0.00 44.74 5.28
4020 4237 7.149973 TCTGTATATTCTTAACCGGTATGTGC 58.850 38.462 8.00 0.00 0.00 4.57
4022 4239 6.926826 TGTATATTCTTAACCGGTATGTGCTG 59.073 38.462 8.00 0.00 0.00 4.41
4023 4240 3.965379 TTCTTAACCGGTATGTGCTGA 57.035 42.857 8.00 0.00 0.00 4.26
4025 4242 1.924524 CTTAACCGGTATGTGCTGACG 59.075 52.381 8.00 0.00 0.00 4.35
4050 4267 1.335496 CGAGCAGCTAGAGTTCCTACC 59.665 57.143 0.00 0.00 0.00 3.18
4055 4272 3.556999 CAGCTAGAGTTCCTACCAGCTA 58.443 50.000 0.00 0.00 28.83 3.32
4056 4273 3.316868 CAGCTAGAGTTCCTACCAGCTAC 59.683 52.174 0.00 0.00 28.83 3.58
4057 4274 3.203487 AGCTAGAGTTCCTACCAGCTACT 59.797 47.826 0.00 0.00 28.30 2.57
4058 4275 3.955551 GCTAGAGTTCCTACCAGCTACTT 59.044 47.826 0.00 0.00 0.00 2.24
4059 4276 4.403113 GCTAGAGTTCCTACCAGCTACTTT 59.597 45.833 0.00 0.00 0.00 2.66
4060 4277 5.105269 GCTAGAGTTCCTACCAGCTACTTTT 60.105 44.000 0.00 0.00 0.00 2.27
4061 4278 5.408880 AGAGTTCCTACCAGCTACTTTTC 57.591 43.478 0.00 0.00 0.00 2.29
4062 4279 5.088026 AGAGTTCCTACCAGCTACTTTTCT 58.912 41.667 0.00 0.00 0.00 2.52
4063 4280 5.186215 AGAGTTCCTACCAGCTACTTTTCTC 59.814 44.000 0.00 0.00 0.00 2.87
4064 4281 4.082136 AGTTCCTACCAGCTACTTTTCTCG 60.082 45.833 0.00 0.00 0.00 4.04
4065 4282 3.428532 TCCTACCAGCTACTTTTCTCGT 58.571 45.455 0.00 0.00 0.00 4.18
4066 4283 3.192844 TCCTACCAGCTACTTTTCTCGTG 59.807 47.826 0.00 0.00 0.00 4.35
4067 4284 3.056749 CCTACCAGCTACTTTTCTCGTGT 60.057 47.826 0.00 0.00 0.00 4.49
4068 4285 4.157289 CCTACCAGCTACTTTTCTCGTGTA 59.843 45.833 0.00 0.00 0.00 2.90
4069 4286 4.803098 ACCAGCTACTTTTCTCGTGTAT 57.197 40.909 0.00 0.00 0.00 2.29
4070 4287 5.148651 ACCAGCTACTTTTCTCGTGTATT 57.851 39.130 0.00 0.00 0.00 1.89
4071 4288 5.548406 ACCAGCTACTTTTCTCGTGTATTT 58.452 37.500 0.00 0.00 0.00 1.40
4072 4289 5.638234 ACCAGCTACTTTTCTCGTGTATTTC 59.362 40.000 0.00 0.00 0.00 2.17
4073 4290 5.063564 CCAGCTACTTTTCTCGTGTATTTCC 59.936 44.000 0.00 0.00 0.00 3.13
4074 4291 5.869888 CAGCTACTTTTCTCGTGTATTTCCT 59.130 40.000 0.00 0.00 0.00 3.36
4075 4292 6.369065 CAGCTACTTTTCTCGTGTATTTCCTT 59.631 38.462 0.00 0.00 0.00 3.36
4076 4293 6.935208 AGCTACTTTTCTCGTGTATTTCCTTT 59.065 34.615 0.00 0.00 0.00 3.11
4077 4294 7.015877 GCTACTTTTCTCGTGTATTTCCTTTG 58.984 38.462 0.00 0.00 0.00 2.77
4078 4295 5.758924 ACTTTTCTCGTGTATTTCCTTTGC 58.241 37.500 0.00 0.00 0.00 3.68
4079 4296 4.759516 TTTCTCGTGTATTTCCTTTGCC 57.240 40.909 0.00 0.00 0.00 4.52
4080 4297 3.695830 TCTCGTGTATTTCCTTTGCCT 57.304 42.857 0.00 0.00 0.00 4.75
4081 4298 4.811969 TCTCGTGTATTTCCTTTGCCTA 57.188 40.909 0.00 0.00 0.00 3.93
4105 4322 4.082571 ACTTGTATTCTGCTTCACCATTGC 60.083 41.667 0.00 0.00 0.00 3.56
4116 4333 4.094294 GCTTCACCATTGCGAATACTGTAA 59.906 41.667 0.00 0.00 0.00 2.41
4225 4442 3.370527 GCCCTATGCAGAAGTTCCTTGTA 60.371 47.826 0.00 0.00 40.77 2.41
4419 4637 0.237235 GCAACAATCTTGCCGTTCGA 59.763 50.000 0.00 0.00 39.38 3.71
4459 4677 5.539955 AGCAACTTTTGTGGAGGATATGTTT 59.460 36.000 0.00 0.00 0.00 2.83
4510 4728 9.812347 ATGGATGAAAGCTATTATATGACCAAA 57.188 29.630 0.00 0.00 0.00 3.28
4563 4781 3.575805 TGAATTTGCTTCTCCCCTTTGT 58.424 40.909 0.00 0.00 34.75 2.83
4601 4821 6.367421 TGTAAACGTTATGATGCACTTTGAC 58.633 36.000 0.00 0.00 0.00 3.18
4638 4858 1.665679 CACCGATTTGAATAGCACGCT 59.334 47.619 0.00 0.00 0.00 5.07
4667 4887 2.902486 TCTGACTTCTGAGCAATGTCCT 59.098 45.455 0.00 0.00 0.00 3.85
4708 4928 8.256605 GTGTACAATCATCCTCTATAGCATGAT 58.743 37.037 0.00 12.47 37.54 2.45
4739 4959 3.437049 GCTATAGCGGATTTTAAGGGCTG 59.563 47.826 9.40 0.00 35.28 4.85
4750 4970 2.122783 TAAGGGCTGCGCTATTTTGT 57.877 45.000 19.99 5.63 0.00 2.83
4811 5032 5.356751 TCCATTACTGTTGTTCATACATGGC 59.643 40.000 0.00 0.00 33.44 4.40
4827 5048 2.519302 GCTGTGGGCTGTGGTTGT 60.519 61.111 0.00 0.00 38.06 3.32
4857 5078 8.574251 TTGCCTTTAACAATTGAGATAGCTAA 57.426 30.769 13.59 3.12 0.00 3.09
4913 5134 7.019774 TCATCTTTTGCTGATATTTTCCTCG 57.980 36.000 0.00 0.00 0.00 4.63
4916 5137 5.357878 TCTTTTGCTGATATTTTCCTCGCAT 59.642 36.000 0.00 0.00 0.00 4.73
4925 5146 0.881118 TTTCCTCGCATGTTTGCCTC 59.119 50.000 0.00 0.00 46.57 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.893601 GTAAGCTCGCGGAGGCCC 62.894 72.222 6.13 0.00 35.02 5.80
33 34 4.893601 GGTAAGCTCGCGGAGGCC 62.894 72.222 6.13 0.00 35.02 5.19
34 35 3.447025 ATGGTAAGCTCGCGGAGGC 62.447 63.158 6.13 8.97 0.00 4.70
35 36 1.300233 GATGGTAAGCTCGCGGAGG 60.300 63.158 6.13 0.00 0.00 4.30
36 37 1.658717 CGATGGTAAGCTCGCGGAG 60.659 63.158 6.13 3.47 0.00 4.63
37 38 2.060004 CTCGATGGTAAGCTCGCGGA 62.060 60.000 6.13 0.00 34.94 5.54
38 39 1.658717 CTCGATGGTAAGCTCGCGG 60.659 63.158 6.13 0.00 34.94 6.46
39 40 0.248498 TTCTCGATGGTAAGCTCGCG 60.248 55.000 0.00 0.00 34.94 5.87
40 41 1.201343 GTTCTCGATGGTAAGCTCGC 58.799 55.000 0.00 0.00 34.94 5.03
41 42 1.405821 AGGTTCTCGATGGTAAGCTCG 59.594 52.381 0.00 0.00 36.25 5.03
42 43 2.427453 TGAGGTTCTCGATGGTAAGCTC 59.573 50.000 16.10 16.10 44.22 4.09
43 44 2.166664 GTGAGGTTCTCGATGGTAAGCT 59.833 50.000 0.00 0.00 32.35 3.74
44 45 2.541556 GTGAGGTTCTCGATGGTAAGC 58.458 52.381 0.00 0.00 32.35 3.09
45 46 2.422479 TCGTGAGGTTCTCGATGGTAAG 59.578 50.000 0.00 0.00 37.45 2.34
46 47 2.422479 CTCGTGAGGTTCTCGATGGTAA 59.578 50.000 4.06 0.00 40.81 2.85
47 48 2.014857 CTCGTGAGGTTCTCGATGGTA 58.985 52.381 4.06 0.00 40.81 3.25
48 49 0.811915 CTCGTGAGGTTCTCGATGGT 59.188 55.000 4.06 0.00 40.81 3.55
49 50 0.526524 GCTCGTGAGGTTCTCGATGG 60.527 60.000 4.06 0.00 40.81 3.51
50 51 0.453793 AGCTCGTGAGGTTCTCGATG 59.546 55.000 4.06 1.47 40.81 3.84
51 52 0.736053 GAGCTCGTGAGGTTCTCGAT 59.264 55.000 0.00 0.00 40.81 3.59
52 53 0.321741 AGAGCTCGTGAGGTTCTCGA 60.322 55.000 8.37 3.65 39.62 4.04
53 54 0.179176 CAGAGCTCGTGAGGTTCTCG 60.179 60.000 8.37 0.00 39.57 4.04
54 55 1.169577 TCAGAGCTCGTGAGGTTCTC 58.830 55.000 8.37 0.00 39.57 2.87
55 56 1.476085 CATCAGAGCTCGTGAGGTTCT 59.524 52.381 17.15 0.00 39.57 3.01
56 57 1.470632 CCATCAGAGCTCGTGAGGTTC 60.471 57.143 19.34 0.00 39.57 3.62
57 58 0.534412 CCATCAGAGCTCGTGAGGTT 59.466 55.000 19.34 5.15 39.57 3.50
58 59 1.954362 GCCATCAGAGCTCGTGAGGT 61.954 60.000 19.34 0.40 42.58 3.85
59 60 1.227205 GCCATCAGAGCTCGTGAGG 60.227 63.158 17.15 16.63 0.00 3.86
60 61 1.227205 GGCCATCAGAGCTCGTGAG 60.227 63.158 17.15 6.99 0.00 3.51
61 62 2.895680 GGCCATCAGAGCTCGTGA 59.104 61.111 8.37 12.64 0.00 4.35
62 63 2.584418 CGGCCATCAGAGCTCGTG 60.584 66.667 8.37 8.81 0.00 4.35
63 64 4.521062 GCGGCCATCAGAGCTCGT 62.521 66.667 8.37 0.00 0.00 4.18
65 66 3.512223 ATCGCGGCCATCAGAGCTC 62.512 63.158 6.13 5.27 0.00 4.09
66 67 3.512223 GATCGCGGCCATCAGAGCT 62.512 63.158 6.13 0.00 0.00 4.09
67 68 3.040763 GATCGCGGCCATCAGAGC 61.041 66.667 6.13 0.00 0.00 4.09
68 69 1.664017 CAGATCGCGGCCATCAGAG 60.664 63.158 6.13 0.00 0.00 3.35
69 70 2.418777 CAGATCGCGGCCATCAGA 59.581 61.111 6.13 0.00 0.00 3.27
70 71 2.664185 CCAGATCGCGGCCATCAG 60.664 66.667 6.13 1.81 0.00 2.90
71 72 4.240103 CCCAGATCGCGGCCATCA 62.240 66.667 6.13 0.00 0.00 3.07
76 77 4.838152 TCTTGCCCAGATCGCGGC 62.838 66.667 16.70 16.70 45.92 6.53
77 78 2.587194 CTCTTGCCCAGATCGCGG 60.587 66.667 6.13 0.00 0.00 6.46
78 79 2.587194 CCTCTTGCCCAGATCGCG 60.587 66.667 0.00 0.00 0.00 5.87
79 80 2.203126 CCCTCTTGCCCAGATCGC 60.203 66.667 0.00 0.00 0.00 4.58
80 81 2.507944 CCCCTCTTGCCCAGATCG 59.492 66.667 0.00 0.00 0.00 3.69
81 82 1.694169 TCCCCCTCTTGCCCAGATC 60.694 63.158 0.00 0.00 0.00 2.75
82 83 2.003548 GTCCCCCTCTTGCCCAGAT 61.004 63.158 0.00 0.00 0.00 2.90
83 84 2.610859 GTCCCCCTCTTGCCCAGA 60.611 66.667 0.00 0.00 0.00 3.86
84 85 3.732849 GGTCCCCCTCTTGCCCAG 61.733 72.222 0.00 0.00 0.00 4.45
85 86 4.608514 TGGTCCCCCTCTTGCCCA 62.609 66.667 0.00 0.00 0.00 5.36
86 87 3.264845 TTGGTCCCCCTCTTGCCC 61.265 66.667 0.00 0.00 0.00 5.36
87 88 2.035783 GTTGGTCCCCCTCTTGCC 59.964 66.667 0.00 0.00 0.00 4.52
88 89 0.609406 GAAGTTGGTCCCCCTCTTGC 60.609 60.000 0.00 0.00 0.00 4.01
89 90 0.038310 GGAAGTTGGTCCCCCTCTTG 59.962 60.000 0.00 0.00 0.00 3.02
90 91 2.476081 GGAAGTTGGTCCCCCTCTT 58.524 57.895 0.00 0.00 0.00 2.85
91 92 4.252493 GGAAGTTGGTCCCCCTCT 57.748 61.111 0.00 0.00 0.00 3.69
97 98 0.399075 TTTCGAGGGGAAGTTGGTCC 59.601 55.000 0.00 0.00 35.70 4.46
98 99 2.265589 TTTTCGAGGGGAAGTTGGTC 57.734 50.000 0.00 0.00 35.70 4.02
99 100 2.740506 TTTTTCGAGGGGAAGTTGGT 57.259 45.000 0.00 0.00 35.70 3.67
100 101 3.153919 TCATTTTTCGAGGGGAAGTTGG 58.846 45.455 0.00 0.00 35.70 3.77
101 102 4.437390 CGATCATTTTTCGAGGGGAAGTTG 60.437 45.833 0.00 0.00 38.88 3.16
102 103 3.689649 CGATCATTTTTCGAGGGGAAGTT 59.310 43.478 0.00 0.00 38.88 2.66
103 104 3.270877 CGATCATTTTTCGAGGGGAAGT 58.729 45.455 0.00 0.00 38.88 3.01
104 105 2.032178 GCGATCATTTTTCGAGGGGAAG 59.968 50.000 0.00 0.00 38.88 3.46
105 106 2.014128 GCGATCATTTTTCGAGGGGAA 58.986 47.619 0.00 0.00 38.88 3.97
106 107 1.663695 GCGATCATTTTTCGAGGGGA 58.336 50.000 0.00 0.00 38.88 4.81
107 108 0.304705 CGCGATCATTTTTCGAGGGG 59.695 55.000 0.00 0.00 38.88 4.79
108 109 3.806257 CGCGATCATTTTTCGAGGG 57.194 52.632 0.00 0.00 38.88 4.30
110 111 1.927174 ACTCCGCGATCATTTTTCGAG 59.073 47.619 8.23 3.65 38.88 4.04
111 112 1.924524 GACTCCGCGATCATTTTTCGA 59.075 47.619 8.23 0.00 38.88 3.71
112 113 1.331161 CGACTCCGCGATCATTTTTCG 60.331 52.381 8.23 0.00 39.55 3.46
113 114 1.004927 CCGACTCCGCGATCATTTTTC 60.005 52.381 8.23 0.00 0.00 2.29
114 115 1.006832 CCGACTCCGCGATCATTTTT 58.993 50.000 8.23 0.00 0.00 1.94
115 116 0.174845 TCCGACTCCGCGATCATTTT 59.825 50.000 8.23 0.00 0.00 1.82
116 117 0.249073 CTCCGACTCCGCGATCATTT 60.249 55.000 8.23 0.00 0.00 2.32
117 118 1.360551 CTCCGACTCCGCGATCATT 59.639 57.895 8.23 0.00 0.00 2.57
118 119 2.556459 CCTCCGACTCCGCGATCAT 61.556 63.158 8.23 0.00 0.00 2.45
119 120 3.209812 CCTCCGACTCCGCGATCA 61.210 66.667 8.23 0.00 0.00 2.92
120 121 4.632458 GCCTCCGACTCCGCGATC 62.632 72.222 8.23 0.52 0.00 3.69
125 126 2.943978 AAAGTGGCCTCCGACTCCG 61.944 63.158 3.32 0.00 0.00 4.63
126 127 1.376037 CAAAGTGGCCTCCGACTCC 60.376 63.158 3.32 0.00 0.00 3.85
127 128 0.670854 GTCAAAGTGGCCTCCGACTC 60.671 60.000 3.32 0.00 0.00 3.36
128 129 1.371558 GTCAAAGTGGCCTCCGACT 59.628 57.895 3.32 0.00 0.00 4.18
129 130 2.027625 CGTCAAAGTGGCCTCCGAC 61.028 63.158 3.32 6.92 0.00 4.79
130 131 2.154798 CTCGTCAAAGTGGCCTCCGA 62.155 60.000 3.32 3.54 0.00 4.55
131 132 1.738099 CTCGTCAAAGTGGCCTCCG 60.738 63.158 3.32 0.00 0.00 4.63
132 133 1.376037 CCTCGTCAAAGTGGCCTCC 60.376 63.158 3.32 0.00 0.00 4.30
133 134 0.951040 CACCTCGTCAAAGTGGCCTC 60.951 60.000 3.32 0.00 0.00 4.70
134 135 1.071471 CACCTCGTCAAAGTGGCCT 59.929 57.895 3.32 0.00 0.00 5.19
135 136 1.966451 CCACCTCGTCAAAGTGGCC 60.966 63.158 0.00 0.00 44.21 5.36
136 137 3.655481 CCACCTCGTCAAAGTGGC 58.345 61.111 0.00 0.00 44.21 5.01
138 139 1.966451 GGGCCACCTCGTCAAAGTG 60.966 63.158 4.39 0.00 0.00 3.16
139 140 2.397413 CTGGGCCACCTCGTCAAAGT 62.397 60.000 0.00 0.00 37.76 2.66
140 141 1.672356 CTGGGCCACCTCGTCAAAG 60.672 63.158 0.00 0.00 37.76 2.77
141 142 2.429930 CTGGGCCACCTCGTCAAA 59.570 61.111 0.00 0.00 37.76 2.69
142 143 4.329545 GCTGGGCCACCTCGTCAA 62.330 66.667 0.00 0.00 37.76 3.18
150 151 4.314440 TCTGTGTCGCTGGGCCAC 62.314 66.667 0.00 0.00 0.00 5.01
151 152 4.314440 GTCTGTGTCGCTGGGCCA 62.314 66.667 5.85 5.85 0.00 5.36
152 153 3.941657 GAGTCTGTGTCGCTGGGCC 62.942 68.421 0.00 0.00 0.00 5.80
153 154 2.433318 GAGTCTGTGTCGCTGGGC 60.433 66.667 0.00 0.00 0.00 5.36
154 155 0.668706 CTTGAGTCTGTGTCGCTGGG 60.669 60.000 0.00 0.00 0.00 4.45
155 156 1.287730 GCTTGAGTCTGTGTCGCTGG 61.288 60.000 0.00 0.00 0.00 4.85
156 157 1.612469 CGCTTGAGTCTGTGTCGCTG 61.612 60.000 0.00 0.00 0.00 5.18
157 158 1.372251 CGCTTGAGTCTGTGTCGCT 60.372 57.895 0.00 0.00 0.00 4.93
158 159 3.004734 GCGCTTGAGTCTGTGTCGC 62.005 63.158 0.00 0.00 0.00 5.19
159 160 1.612469 CTGCGCTTGAGTCTGTGTCG 61.612 60.000 9.73 0.00 0.00 4.35
160 161 0.319040 TCTGCGCTTGAGTCTGTGTC 60.319 55.000 9.73 0.00 0.00 3.67
161 162 0.319383 CTCTGCGCTTGAGTCTGTGT 60.319 55.000 9.73 0.00 0.00 3.72
162 163 0.038801 TCTCTGCGCTTGAGTCTGTG 60.039 55.000 23.05 5.49 33.59 3.66
163 164 0.676184 TTCTCTGCGCTTGAGTCTGT 59.324 50.000 23.05 0.00 33.59 3.41
164 165 1.788258 TTTCTCTGCGCTTGAGTCTG 58.212 50.000 23.05 6.34 33.59 3.51
165 166 2.533266 TTTTCTCTGCGCTTGAGTCT 57.467 45.000 23.05 0.00 33.59 3.24
182 183 2.618709 CCCTCTGCTTCGTCTTGTTTTT 59.381 45.455 0.00 0.00 0.00 1.94
183 184 2.222027 CCCTCTGCTTCGTCTTGTTTT 58.778 47.619 0.00 0.00 0.00 2.43
184 185 1.543429 CCCCTCTGCTTCGTCTTGTTT 60.543 52.381 0.00 0.00 0.00 2.83
185 186 0.035458 CCCCTCTGCTTCGTCTTGTT 59.965 55.000 0.00 0.00 0.00 2.83
186 187 1.674057 CCCCTCTGCTTCGTCTTGT 59.326 57.895 0.00 0.00 0.00 3.16
187 188 1.078848 CCCCCTCTGCTTCGTCTTG 60.079 63.158 0.00 0.00 0.00 3.02
188 189 0.836400 TTCCCCCTCTGCTTCGTCTT 60.836 55.000 0.00 0.00 0.00 3.01
189 190 0.836400 TTTCCCCCTCTGCTTCGTCT 60.836 55.000 0.00 0.00 0.00 4.18
190 191 0.036306 TTTTCCCCCTCTGCTTCGTC 59.964 55.000 0.00 0.00 0.00 4.20
191 192 0.698818 ATTTTCCCCCTCTGCTTCGT 59.301 50.000 0.00 0.00 0.00 3.85
192 193 1.098050 CATTTTCCCCCTCTGCTTCG 58.902 55.000 0.00 0.00 0.00 3.79
193 194 1.005924 TCCATTTTCCCCCTCTGCTTC 59.994 52.381 0.00 0.00 0.00 3.86
194 195 1.006400 CTCCATTTTCCCCCTCTGCTT 59.994 52.381 0.00 0.00 0.00 3.91
195 196 0.627986 CTCCATTTTCCCCCTCTGCT 59.372 55.000 0.00 0.00 0.00 4.24
196 197 0.396278 CCTCCATTTTCCCCCTCTGC 60.396 60.000 0.00 0.00 0.00 4.26
197 198 0.259938 CCCTCCATTTTCCCCCTCTG 59.740 60.000 0.00 0.00 0.00 3.35
198 199 1.584717 GCCCTCCATTTTCCCCCTCT 61.585 60.000 0.00 0.00 0.00 3.69
199 200 1.075970 GCCCTCCATTTTCCCCCTC 60.076 63.158 0.00 0.00 0.00 4.30
200 201 2.996330 CGCCCTCCATTTTCCCCCT 61.996 63.158 0.00 0.00 0.00 4.79
201 202 2.442087 CGCCCTCCATTTTCCCCC 60.442 66.667 0.00 0.00 0.00 5.40
202 203 3.147595 GCGCCCTCCATTTTCCCC 61.148 66.667 0.00 0.00 0.00 4.81
203 204 2.362375 TGCGCCCTCCATTTTCCC 60.362 61.111 4.18 0.00 0.00 3.97
204 205 2.710902 GGTGCGCCCTCCATTTTCC 61.711 63.158 4.45 0.00 0.00 3.13
205 206 1.678970 AGGTGCGCCCTCCATTTTC 60.679 57.895 14.07 0.00 40.71 2.29
206 207 1.978617 CAGGTGCGCCCTCCATTTT 60.979 57.895 14.07 0.00 43.86 1.82
207 208 2.361610 CAGGTGCGCCCTCCATTT 60.362 61.111 14.07 0.00 43.86 2.32
208 209 4.431131 CCAGGTGCGCCCTCCATT 62.431 66.667 14.07 0.00 43.86 3.16
218 219 1.298859 CGTAACTTGGAGCCAGGTGC 61.299 60.000 4.96 1.53 36.37 5.01
219 220 0.673644 CCGTAACTTGGAGCCAGGTG 60.674 60.000 4.96 0.00 36.37 4.00
220 221 1.677552 CCGTAACTTGGAGCCAGGT 59.322 57.895 0.00 0.00 37.88 4.00
221 222 1.078426 CCCGTAACTTGGAGCCAGG 60.078 63.158 0.00 0.00 0.00 4.45
222 223 1.745489 GCCCGTAACTTGGAGCCAG 60.745 63.158 0.00 0.00 0.00 4.85
223 224 2.349755 GCCCGTAACTTGGAGCCA 59.650 61.111 0.00 0.00 0.00 4.75
224 225 2.818274 CGCCCGTAACTTGGAGCC 60.818 66.667 0.00 0.00 0.00 4.70
225 226 2.818274 CCGCCCGTAACTTGGAGC 60.818 66.667 0.00 0.00 0.00 4.70
226 227 2.818274 GCCGCCCGTAACTTGGAG 60.818 66.667 0.00 0.00 0.00 3.86
227 228 4.397832 GGCCGCCCGTAACTTGGA 62.398 66.667 0.00 0.00 0.00 3.53
288 289 1.153208 GATGCTGCTCACCCTGAGG 60.153 63.158 0.00 0.00 44.43 3.86
289 290 1.153208 GGATGCTGCTCACCCTGAG 60.153 63.158 0.00 0.00 46.90 3.35
290 291 1.907222 CTGGATGCTGCTCACCCTGA 61.907 60.000 0.00 0.00 0.00 3.86
291 292 1.451567 CTGGATGCTGCTCACCCTG 60.452 63.158 0.00 0.00 0.00 4.45
292 293 2.996395 CTGGATGCTGCTCACCCT 59.004 61.111 0.00 0.00 0.00 4.34
293 294 2.827642 GCTGGATGCTGCTCACCC 60.828 66.667 8.86 0.00 38.95 4.61
294 295 2.827642 GGCTGGATGCTGCTCACC 60.828 66.667 15.34 2.39 42.39 4.02
295 296 3.200593 CGGCTGGATGCTGCTCAC 61.201 66.667 15.34 0.00 41.61 3.51
301 302 3.382803 GAGTGCTCGGCTGGATGCT 62.383 63.158 0.00 0.00 42.39 3.79
302 303 2.894387 GAGTGCTCGGCTGGATGC 60.894 66.667 0.00 0.00 41.94 3.91
303 304 2.202987 GGAGTGCTCGGCTGGATG 60.203 66.667 0.00 0.00 0.00 3.51
304 305 3.842923 CGGAGTGCTCGGCTGGAT 61.843 66.667 0.00 0.00 0.00 3.41
312 313 4.899239 CATCCCGCCGGAGTGCTC 62.899 72.222 5.05 0.00 43.12 4.26
326 327 4.489771 CTCCCCGGTGGTGGCATC 62.490 72.222 0.00 0.00 34.77 3.91
331 332 4.715130 TCCTCCTCCCCGGTGGTG 62.715 72.222 0.00 2.23 45.01 4.17
332 333 4.716977 GTCCTCCTCCCCGGTGGT 62.717 72.222 0.00 0.00 45.01 4.16
334 335 4.753662 TCGTCCTCCTCCCCGGTG 62.754 72.222 0.00 0.00 0.00 4.94
335 336 4.755507 GTCGTCCTCCTCCCCGGT 62.756 72.222 0.00 0.00 0.00 5.28
338 339 4.437587 TCGGTCGTCCTCCTCCCC 62.438 72.222 0.00 0.00 0.00 4.81
339 340 3.139469 GTCGGTCGTCCTCCTCCC 61.139 72.222 0.00 0.00 0.00 4.30
340 341 2.045143 AGTCGGTCGTCCTCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
341 342 3.053849 GCAGTCGGTCGTCCTCCTC 62.054 68.421 0.00 0.00 0.00 3.71
342 343 3.063084 GCAGTCGGTCGTCCTCCT 61.063 66.667 0.00 0.00 0.00 3.69
343 344 4.477975 CGCAGTCGGTCGTCCTCC 62.478 72.222 0.00 0.00 0.00 4.30
344 345 3.429141 TCGCAGTCGGTCGTCCTC 61.429 66.667 0.00 0.00 36.13 3.71
345 346 3.735029 GTCGCAGTCGGTCGTCCT 61.735 66.667 0.00 0.00 36.13 3.85
353 354 2.403987 CTACTCCCGTCGCAGTCG 59.596 66.667 0.00 0.00 39.05 4.18
354 355 2.799371 CCTACTCCCGTCGCAGTC 59.201 66.667 0.00 0.00 0.00 3.51
355 356 3.450115 GCCTACTCCCGTCGCAGT 61.450 66.667 1.27 1.27 0.00 4.40
356 357 4.554363 CGCCTACTCCCGTCGCAG 62.554 72.222 0.00 0.00 0.00 5.18
400 401 1.729881 GGATCATCACGCCTTTGGC 59.270 57.895 0.00 0.00 46.75 4.52
401 402 0.461870 TCGGATCATCACGCCTTTGG 60.462 55.000 0.00 0.00 0.00 3.28
402 403 0.933097 CTCGGATCATCACGCCTTTG 59.067 55.000 0.00 0.00 0.00 2.77
403 404 0.811616 GCTCGGATCATCACGCCTTT 60.812 55.000 0.00 0.00 0.00 3.11
404 405 1.227380 GCTCGGATCATCACGCCTT 60.227 57.895 0.00 0.00 0.00 4.35
405 406 2.419198 GCTCGGATCATCACGCCT 59.581 61.111 0.00 0.00 0.00 5.52
406 407 2.663188 GGCTCGGATCATCACGCC 60.663 66.667 0.00 0.00 0.00 5.68
407 408 3.032609 CGGCTCGGATCATCACGC 61.033 66.667 0.00 0.00 0.00 5.34
408 409 3.032609 GCGGCTCGGATCATCACG 61.033 66.667 0.00 0.00 0.00 4.35
409 410 2.663188 GGCGGCTCGGATCATCAC 60.663 66.667 0.00 0.00 0.00 3.06
410 411 3.928779 GGGCGGCTCGGATCATCA 61.929 66.667 9.56 0.00 0.00 3.07
411 412 4.688966 GGGGCGGCTCGGATCATC 62.689 72.222 9.56 0.00 0.00 2.92
425 426 3.099170 CATCTCCTGGGGTGGGGG 61.099 72.222 0.00 0.00 0.00 5.40
426 427 3.099170 CCATCTCCTGGGGTGGGG 61.099 72.222 7.16 0.00 41.82 4.96
427 428 3.813724 GCCATCTCCTGGGGTGGG 61.814 72.222 14.46 9.01 46.06 4.61
432 433 2.037620 CTCCTTCGCCATCTCCTGGG 62.038 65.000 0.00 0.00 46.06 4.45
434 435 0.388659 CTCTCCTTCGCCATCTCCTG 59.611 60.000 0.00 0.00 0.00 3.86
435 436 0.758685 CCTCTCCTTCGCCATCTCCT 60.759 60.000 0.00 0.00 0.00 3.69
436 437 0.757188 TCCTCTCCTTCGCCATCTCC 60.757 60.000 0.00 0.00 0.00 3.71
437 438 0.387565 GTCCTCTCCTTCGCCATCTC 59.612 60.000 0.00 0.00 0.00 2.75
438 439 0.324738 TGTCCTCTCCTTCGCCATCT 60.325 55.000 0.00 0.00 0.00 2.90
439 440 0.537188 TTGTCCTCTCCTTCGCCATC 59.463 55.000 0.00 0.00 0.00 3.51
440 441 0.250513 GTTGTCCTCTCCTTCGCCAT 59.749 55.000 0.00 0.00 0.00 4.40
441 442 1.118965 TGTTGTCCTCTCCTTCGCCA 61.119 55.000 0.00 0.00 0.00 5.69
442 443 0.390472 CTGTTGTCCTCTCCTTCGCC 60.390 60.000 0.00 0.00 0.00 5.54
443 444 0.603569 TCTGTTGTCCTCTCCTTCGC 59.396 55.000 0.00 0.00 0.00 4.70
444 445 1.067495 GGTCTGTTGTCCTCTCCTTCG 60.067 57.143 0.00 0.00 0.00 3.79
445 446 1.276705 GGGTCTGTTGTCCTCTCCTTC 59.723 57.143 0.00 0.00 0.00 3.46
446 447 1.353091 GGGTCTGTTGTCCTCTCCTT 58.647 55.000 0.00 0.00 0.00 3.36
447 448 0.900647 CGGGTCTGTTGTCCTCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
448 449 1.592223 CGGGTCTGTTGTCCTCTCC 59.408 63.158 0.00 0.00 0.00 3.71
449 450 1.592223 CCGGGTCTGTTGTCCTCTC 59.408 63.158 0.00 0.00 0.00 3.20
450 451 2.584391 GCCGGGTCTGTTGTCCTCT 61.584 63.158 2.18 0.00 0.00 3.69
451 452 2.047179 GCCGGGTCTGTTGTCCTC 60.047 66.667 2.18 0.00 0.00 3.71
452 453 3.637273 GGCCGGGTCTGTTGTCCT 61.637 66.667 2.18 0.00 0.00 3.85
453 454 4.717313 GGGCCGGGTCTGTTGTCC 62.717 72.222 2.18 0.00 0.00 4.02
454 455 3.901797 CTGGGCCGGGTCTGTTGTC 62.902 68.421 3.77 0.00 0.00 3.18
455 456 3.953775 CTGGGCCGGGTCTGTTGT 61.954 66.667 3.77 0.00 0.00 3.32
852 853 4.323477 TGAGCCCCACGGTTTCGG 62.323 66.667 0.00 0.00 41.39 4.30
853 854 3.047877 GTGAGCCCCACGGTTTCG 61.048 66.667 0.00 0.00 43.02 3.46
854 855 2.671963 GGTGAGCCCCACGGTTTC 60.672 66.667 1.41 0.00 46.62 2.78
1138 1146 0.614979 TTGGAAGAGGAGGAGACGGG 60.615 60.000 0.00 0.00 0.00 5.28
1168 1176 2.840753 TTGGGCAAGGAGGGTGGTC 61.841 63.158 0.00 0.00 0.00 4.02
1325 1335 1.444553 CGGCAGGTCTGAGAACGTC 60.445 63.158 1.65 0.00 0.00 4.34
1534 1544 8.582657 AGTGTGAAATCCTACTCGCTATATAT 57.417 34.615 0.00 0.00 0.00 0.86
1611 1627 1.065926 CATAACAGGGCAGTGCTGAGA 60.066 52.381 16.11 0.62 0.00 3.27
1776 1792 5.835113 AGCAGTTTTCAGCAAAAGTCTAA 57.165 34.783 0.00 0.00 33.55 2.10
1844 1860 8.641499 TGTAAACTTGTGATTCAAATCCAAAC 57.359 30.769 0.48 1.91 35.48 2.93
2049 2066 6.436847 TGAATTTGACATCTTCTTGGGCATAA 59.563 34.615 0.00 0.00 0.00 1.90
2252 2269 5.559035 GCATATGCACCGATTTTGAGTCTAC 60.559 44.000 22.84 0.00 41.59 2.59
2265 2282 1.297819 CAGCAACGCATATGCACCG 60.298 57.895 26.52 14.49 46.22 4.94
2450 2467 5.564550 GGGATATGAGCCAATATCAGTTGT 58.435 41.667 14.82 0.00 40.07 3.32
2451 2468 4.633126 CGGGATATGAGCCAATATCAGTTG 59.367 45.833 14.82 0.00 40.07 3.16
2462 2479 1.040646 TGACTCACGGGATATGAGCC 58.959 55.000 0.00 0.00 46.33 4.70
2681 2698 0.523519 GCCAAAGTTGAGTAGCTGGC 59.476 55.000 0.00 0.00 42.28 4.85
2736 2753 0.680921 AATCCAGGTTCATGGCGGTG 60.681 55.000 0.00 0.00 40.41 4.94
2764 2781 0.990374 ATCCTTCACAGCAAGGCTCT 59.010 50.000 0.00 0.00 42.63 4.09
3527 3558 0.108945 GCTTTGGCATTGGAGACAGC 60.109 55.000 0.00 0.00 39.20 4.40
3605 3636 0.606604 GGTGCTTCTCGGTAGTTCCA 59.393 55.000 0.00 0.00 35.57 3.53
3769 3800 6.001460 ACAGCAAATGTTAAGCCACTTAGTA 58.999 36.000 0.00 0.00 39.96 1.82
3852 3884 1.417890 CCCATCCCAGTAACCAGCTAG 59.582 57.143 0.00 0.00 0.00 3.42
3945 3977 1.003866 GTGCAGTTTCGTTCTCCACAC 60.004 52.381 0.00 0.00 0.00 3.82
4012 4045 2.063266 TCGAAAACGTCAGCACATACC 58.937 47.619 0.00 0.00 0.00 2.73
4013 4046 2.472397 GCTCGAAAACGTCAGCACATAC 60.472 50.000 0.00 0.00 33.27 2.39
4020 4237 1.651138 CTAGCTGCTCGAAAACGTCAG 59.349 52.381 4.91 0.00 0.00 3.51
4022 4239 1.914700 CTCTAGCTGCTCGAAAACGTC 59.085 52.381 4.91 0.00 0.00 4.34
4023 4240 1.269998 ACTCTAGCTGCTCGAAAACGT 59.730 47.619 4.91 0.00 0.00 3.99
4025 4242 2.668945 GGAACTCTAGCTGCTCGAAAAC 59.331 50.000 4.91 0.00 0.00 2.43
4050 4267 5.869888 AGGAAATACACGAGAAAAGTAGCTG 59.130 40.000 0.00 0.00 0.00 4.24
4055 4272 5.278315 GGCAAAGGAAATACACGAGAAAAGT 60.278 40.000 0.00 0.00 0.00 2.66
4056 4273 5.048713 AGGCAAAGGAAATACACGAGAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
4057 4274 4.825085 AGGCAAAGGAAATACACGAGAAAA 59.175 37.500 0.00 0.00 0.00 2.29
4058 4275 4.394729 AGGCAAAGGAAATACACGAGAAA 58.605 39.130 0.00 0.00 0.00 2.52
4059 4276 4.015872 AGGCAAAGGAAATACACGAGAA 57.984 40.909 0.00 0.00 0.00 2.87
4060 4277 3.695830 AGGCAAAGGAAATACACGAGA 57.304 42.857 0.00 0.00 0.00 4.04
4061 4278 4.935808 AGTTAGGCAAAGGAAATACACGAG 59.064 41.667 0.00 0.00 0.00 4.18
4062 4279 4.901868 AGTTAGGCAAAGGAAATACACGA 58.098 39.130 0.00 0.00 0.00 4.35
4063 4280 5.048991 ACAAGTTAGGCAAAGGAAATACACG 60.049 40.000 0.00 0.00 0.00 4.49
4064 4281 6.327279 ACAAGTTAGGCAAAGGAAATACAC 57.673 37.500 0.00 0.00 0.00 2.90
4065 4282 8.644374 AATACAAGTTAGGCAAAGGAAATACA 57.356 30.769 0.00 0.00 0.00 2.29
4066 4283 8.957466 AGAATACAAGTTAGGCAAAGGAAATAC 58.043 33.333 0.00 0.00 0.00 1.89
4067 4284 8.956426 CAGAATACAAGTTAGGCAAAGGAAATA 58.044 33.333 0.00 0.00 0.00 1.40
4068 4285 7.577616 GCAGAATACAAGTTAGGCAAAGGAAAT 60.578 37.037 0.00 0.00 0.00 2.17
4069 4286 6.294508 GCAGAATACAAGTTAGGCAAAGGAAA 60.295 38.462 0.00 0.00 0.00 3.13
4070 4287 5.183140 GCAGAATACAAGTTAGGCAAAGGAA 59.817 40.000 0.00 0.00 0.00 3.36
4071 4288 4.700213 GCAGAATACAAGTTAGGCAAAGGA 59.300 41.667 0.00 0.00 0.00 3.36
4072 4289 4.702131 AGCAGAATACAAGTTAGGCAAAGG 59.298 41.667 0.00 0.00 0.00 3.11
4073 4290 5.886960 AGCAGAATACAAGTTAGGCAAAG 57.113 39.130 0.00 0.00 0.00 2.77
4074 4291 5.767665 TGAAGCAGAATACAAGTTAGGCAAA 59.232 36.000 0.00 0.00 0.00 3.68
4075 4292 5.181245 GTGAAGCAGAATACAAGTTAGGCAA 59.819 40.000 0.00 0.00 0.00 4.52
4076 4293 4.695455 GTGAAGCAGAATACAAGTTAGGCA 59.305 41.667 0.00 0.00 0.00 4.75
4077 4294 4.095036 GGTGAAGCAGAATACAAGTTAGGC 59.905 45.833 0.00 0.00 0.00 3.93
4078 4295 5.245531 TGGTGAAGCAGAATACAAGTTAGG 58.754 41.667 0.00 0.00 0.00 2.69
4079 4296 6.992063 ATGGTGAAGCAGAATACAAGTTAG 57.008 37.500 0.00 0.00 0.00 2.34
4080 4297 6.349280 GCAATGGTGAAGCAGAATACAAGTTA 60.349 38.462 0.00 0.00 0.00 2.24
4081 4298 5.565439 GCAATGGTGAAGCAGAATACAAGTT 60.565 40.000 0.00 0.00 0.00 2.66
4144 4361 6.976934 TTGAAGCCAGTTTCCTAGAAATTT 57.023 33.333 0.00 0.00 0.00 1.82
4159 4376 1.619827 CCTCTGCCAAATTTGAAGCCA 59.380 47.619 19.86 9.54 0.00 4.75
4225 4442 7.241628 TGGAGACAGGTACACATATATGATCT 58.758 38.462 19.63 0.00 35.01 2.75
4328 4546 3.815809 TCCAATTCCAAACGTGAGAACT 58.184 40.909 0.00 0.00 0.00 3.01
4419 4637 9.167311 CAAAAGTTGCTAGTTGATAACCTCTAT 57.833 33.333 0.00 0.00 0.00 1.98
4601 4821 2.745152 CGGTGGCCTTGAGGTATTTAGG 60.745 54.545 3.32 0.00 37.57 2.69
4638 4858 3.694566 TGCTCAGAAGTCAGAACGCTATA 59.305 43.478 0.00 0.00 0.00 1.31
4811 5032 0.179032 TACACAACCACAGCCCACAG 60.179 55.000 0.00 0.00 0.00 3.66
4827 5048 7.759489 ATCTCAATTGTTAAAGGCAAGTACA 57.241 32.000 5.13 0.00 0.00 2.90
4857 5078 6.991938 TCAATAGCAAATTGTAAAAGGCAGT 58.008 32.000 10.51 0.00 0.00 4.40
4893 5114 4.985413 TGCGAGGAAAATATCAGCAAAAG 58.015 39.130 0.00 0.00 33.58 2.27
4913 5134 0.874390 TTGTCTCGAGGCAAACATGC 59.126 50.000 29.16 1.70 0.00 4.06
4916 5137 5.935206 TGTAATAATTGTCTCGAGGCAAACA 59.065 36.000 33.79 27.98 0.00 2.83
4925 5146 9.546909 GCCATATCAATTGTAATAATTGTCTCG 57.453 33.333 5.13 0.00 38.44 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.