Multiple sequence alignment - TraesCS7B01G211800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G211800 chr7B 100.000 4497 0 0 1 4497 387649571 387645075 0.000000e+00 8305
1 TraesCS7B01G211800 chr7B 91.223 319 25 3 326 644 165567756 165567441 8.940000e-117 431
2 TraesCS7B01G211800 chr7B 91.781 146 10 1 1 144 387668452 387668307 7.630000e-48 202
3 TraesCS7B01G211800 chr7D 93.899 3901 162 33 641 4495 390911431 390907561 0.000000e+00 5816
4 TraesCS7B01G211800 chr7D 90.972 144 13 0 1 144 556544889 556545032 1.280000e-45 195
5 TraesCS7B01G211800 chr7D 90.411 146 13 1 1 145 13826216 13826361 1.650000e-44 191
6 TraesCS7B01G211800 chr7A 92.978 3717 141 39 876 4497 442955193 442951502 0.000000e+00 5308
7 TraesCS7B01G211800 chr7A 89.516 248 10 8 641 883 442955454 442955218 2.630000e-77 300
8 TraesCS7B01G211800 chr5A 94.872 312 15 1 325 635 618669900 618669589 1.880000e-133 486
9 TraesCS7B01G211800 chr5A 91.167 317 26 2 328 643 601168896 601169211 3.210000e-116 429
10 TraesCS7B01G211800 chr5B 92.971 313 20 2 326 637 496093525 496093836 5.300000e-124 455
11 TraesCS7B01G211800 chr5B 92.466 146 10 1 1 146 606826098 606825954 1.640000e-49 207
12 TraesCS7B01G211800 chr5B 92.361 144 11 0 1 144 594275890 594275747 5.900000e-49 206
13 TraesCS7B01G211800 chr1B 92.903 310 21 1 328 637 678849285 678849593 2.470000e-122 449
14 TraesCS7B01G211800 chr6B 92.332 313 20 4 328 637 511571749 511571438 4.130000e-120 442
15 TraesCS7B01G211800 chr6B 91.096 146 9 1 3 144 688195520 688195375 1.280000e-45 195
16 TraesCS7B01G211800 chr1A 92.508 307 22 1 330 635 212015818 212016124 5.340000e-119 438
17 TraesCS7B01G211800 chr3A 92.484 306 22 1 330 635 20552994 20552690 1.920000e-118 436
18 TraesCS7B01G211800 chr2B 91.987 312 23 2 325 635 470786053 470786363 1.920000e-118 436
19 TraesCS7B01G211800 chr3B 91.781 146 10 2 1 144 789496085 789496230 7.630000e-48 202
20 TraesCS7B01G211800 chr3B 89.796 147 14 1 1 147 231985166 231985021 2.140000e-43 187
21 TraesCS7B01G211800 chr4D 90.345 145 13 1 1 144 5925042 5924898 5.940000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G211800 chr7B 387645075 387649571 4496 True 8305 8305 100.000 1 4497 1 chr7B.!!$R2 4496
1 TraesCS7B01G211800 chr7D 390907561 390911431 3870 True 5816 5816 93.899 641 4495 1 chr7D.!!$R1 3854
2 TraesCS7B01G211800 chr7A 442951502 442955454 3952 True 2804 5308 91.247 641 4497 2 chr7A.!!$R1 3856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.0 15.95 0.0 44.36 1.90 F
372 373 0.109723 TCGGTGGGACTTTTGAAGGG 59.890 55.0 0.00 0.0 0.00 3.95 F
739 741 0.109781 CACACGCAAATCGAAAGGGG 60.110 55.0 0.00 0.0 41.67 4.79 F
1572 1641 0.389817 TTCCATGACTTGCGGACGAG 60.390 55.0 0.00 0.0 0.00 4.18 F
3446 3560 0.880278 GTTCGTGCTCAGCAAGACCA 60.880 55.0 15.47 0.0 45.42 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1762 2.134789 AGAAATTCATCCGGCTGCTT 57.865 45.000 0.00 0.0 0.00 3.91 R
2193 2290 3.179830 CAGTCCTAGTCACGGAATTTCG 58.820 50.000 4.10 4.1 31.13 3.46 R
2565 2663 1.534595 GAGTTGCAGGTGCTCTTTCAG 59.465 52.381 3.18 0.0 42.66 3.02 R
3493 3607 0.313672 TTGCGCCAAACTCCATTCAC 59.686 50.000 4.18 0.0 0.00 3.18 R
4336 4497 0.696501 TCCAAAACCTGGGGAGCTAC 59.303 55.000 0.00 0.0 46.44 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.584733 GGATTTGGTCCTGCCTTATCT 57.415 47.619 0.00 0.00 44.16 1.98
48 49 3.903467 GGATTTGGTCCTGCCTTATCTT 58.097 45.455 0.00 0.00 44.16 2.40
49 50 3.633986 GGATTTGGTCCTGCCTTATCTTG 59.366 47.826 0.00 0.00 44.16 3.02
50 51 3.806949 TTTGGTCCTGCCTTATCTTGT 57.193 42.857 0.00 0.00 38.35 3.16
51 52 4.919774 TTTGGTCCTGCCTTATCTTGTA 57.080 40.909 0.00 0.00 38.35 2.41
52 53 3.906720 TGGTCCTGCCTTATCTTGTAC 57.093 47.619 0.00 0.00 38.35 2.90
53 54 3.450904 TGGTCCTGCCTTATCTTGTACT 58.549 45.455 0.00 0.00 38.35 2.73
54 55 3.844211 TGGTCCTGCCTTATCTTGTACTT 59.156 43.478 0.00 0.00 38.35 2.24
55 56 4.081087 TGGTCCTGCCTTATCTTGTACTTC 60.081 45.833 0.00 0.00 38.35 3.01
56 57 4.081087 GGTCCTGCCTTATCTTGTACTTCA 60.081 45.833 0.00 0.00 0.00 3.02
57 58 5.488341 GTCCTGCCTTATCTTGTACTTCAA 58.512 41.667 0.00 0.00 34.61 2.69
58 59 9.630391 TGGTCCTGCCTTATCTTGTACTTCAAG 62.630 44.444 0.00 1.71 44.85 3.02
67 68 4.918810 CTTGTACTTCAAGTTGGCCTTT 57.081 40.909 3.32 0.00 45.89 3.11
68 69 4.610945 CTTGTACTTCAAGTTGGCCTTTG 58.389 43.478 3.32 6.59 45.89 2.77
69 70 3.626930 TGTACTTCAAGTTGGCCTTTGT 58.373 40.909 3.32 0.00 0.00 2.83
70 71 4.783055 TGTACTTCAAGTTGGCCTTTGTA 58.217 39.130 3.32 0.00 0.00 2.41
71 72 4.577283 TGTACTTCAAGTTGGCCTTTGTAC 59.423 41.667 3.32 6.82 35.06 2.90
72 73 3.898482 ACTTCAAGTTGGCCTTTGTACT 58.102 40.909 3.32 0.00 0.00 2.73
73 74 3.883489 ACTTCAAGTTGGCCTTTGTACTC 59.117 43.478 3.32 0.00 0.00 2.59
74 75 2.858745 TCAAGTTGGCCTTTGTACTCC 58.141 47.619 3.32 0.00 0.00 3.85
75 76 2.441750 TCAAGTTGGCCTTTGTACTCCT 59.558 45.455 3.32 0.00 0.00 3.69
76 77 3.649023 TCAAGTTGGCCTTTGTACTCCTA 59.351 43.478 3.32 0.00 0.00 2.94
77 78 3.697619 AGTTGGCCTTTGTACTCCTAC 57.302 47.619 3.32 0.00 0.00 3.18
78 79 2.976882 AGTTGGCCTTTGTACTCCTACA 59.023 45.455 3.32 0.00 0.00 2.74
79 80 3.587506 AGTTGGCCTTTGTACTCCTACAT 59.412 43.478 3.32 0.00 32.70 2.29
80 81 4.781087 AGTTGGCCTTTGTACTCCTACATA 59.219 41.667 3.32 0.00 32.70 2.29
81 82 5.428783 AGTTGGCCTTTGTACTCCTACATAT 59.571 40.000 3.32 0.00 32.70 1.78
82 83 6.614087 AGTTGGCCTTTGTACTCCTACATATA 59.386 38.462 3.32 0.00 32.70 0.86
83 84 7.292591 AGTTGGCCTTTGTACTCCTACATATAT 59.707 37.037 3.32 0.00 32.70 0.86
84 85 7.004555 TGGCCTTTGTACTCCTACATATATG 57.995 40.000 11.29 11.29 32.70 1.78
85 86 5.875359 GGCCTTTGTACTCCTACATATATGC 59.125 44.000 12.79 0.00 32.70 3.14
86 87 5.875359 GCCTTTGTACTCCTACATATATGCC 59.125 44.000 12.79 0.00 32.70 4.40
87 88 6.407202 CCTTTGTACTCCTACATATATGCCC 58.593 44.000 12.79 0.00 32.70 5.36
88 89 6.013725 CCTTTGTACTCCTACATATATGCCCA 60.014 42.308 12.79 0.00 32.70 5.36
89 90 5.995565 TGTACTCCTACATATATGCCCAC 57.004 43.478 12.79 2.71 0.00 4.61
90 91 4.461431 TGTACTCCTACATATATGCCCACG 59.539 45.833 12.79 2.04 0.00 4.94
91 92 3.774734 ACTCCTACATATATGCCCACGA 58.225 45.455 12.79 1.32 0.00 4.35
92 93 3.764434 ACTCCTACATATATGCCCACGAG 59.236 47.826 12.79 11.93 0.00 4.18
93 94 3.096852 TCCTACATATATGCCCACGAGG 58.903 50.000 12.79 9.56 39.47 4.63
102 103 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
103 104 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
104 105 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
105 106 1.475751 CCCACGAGGCTCAAGCAATAT 60.476 52.381 15.95 0.00 44.36 1.28
106 107 2.224281 CCCACGAGGCTCAAGCAATATA 60.224 50.000 15.95 0.00 44.36 0.86
107 108 3.557898 CCCACGAGGCTCAAGCAATATAT 60.558 47.826 15.95 0.00 44.36 0.86
108 109 3.681897 CCACGAGGCTCAAGCAATATATC 59.318 47.826 15.95 0.00 44.36 1.63
109 110 4.309933 CACGAGGCTCAAGCAATATATCA 58.690 43.478 15.95 0.00 44.36 2.15
110 111 4.751600 CACGAGGCTCAAGCAATATATCAA 59.248 41.667 15.95 0.00 44.36 2.57
111 112 4.752101 ACGAGGCTCAAGCAATATATCAAC 59.248 41.667 15.95 0.00 44.36 3.18
112 113 4.993584 CGAGGCTCAAGCAATATATCAACT 59.006 41.667 15.95 0.00 44.36 3.16
113 114 6.159293 CGAGGCTCAAGCAATATATCAACTA 58.841 40.000 15.95 0.00 44.36 2.24
114 115 6.815641 CGAGGCTCAAGCAATATATCAACTAT 59.184 38.462 15.95 0.00 44.36 2.12
115 116 7.332926 CGAGGCTCAAGCAATATATCAACTATT 59.667 37.037 15.95 0.00 44.36 1.73
116 117 8.558973 AGGCTCAAGCAATATATCAACTATTC 57.441 34.615 4.13 0.00 44.36 1.75
117 118 7.609532 AGGCTCAAGCAATATATCAACTATTCC 59.390 37.037 4.13 0.00 44.36 3.01
118 119 7.391554 GGCTCAAGCAATATATCAACTATTCCA 59.608 37.037 4.13 0.00 44.36 3.53
119 120 8.233190 GCTCAAGCAATATATCAACTATTCCAC 58.767 37.037 0.00 0.00 41.59 4.02
120 121 8.621532 TCAAGCAATATATCAACTATTCCACC 57.378 34.615 0.00 0.00 0.00 4.61
121 122 8.217111 TCAAGCAATATATCAACTATTCCACCA 58.783 33.333 0.00 0.00 0.00 4.17
122 123 8.849168 CAAGCAATATATCAACTATTCCACCAA 58.151 33.333 0.00 0.00 0.00 3.67
123 124 8.995027 AGCAATATATCAACTATTCCACCAAA 57.005 30.769 0.00 0.00 0.00 3.28
124 125 9.420118 AGCAATATATCAACTATTCCACCAAAA 57.580 29.630 0.00 0.00 0.00 2.44
130 131 9.927081 ATATCAACTATTCCACCAAAAATCTCT 57.073 29.630 0.00 0.00 0.00 3.10
131 132 7.687941 TCAACTATTCCACCAAAAATCTCTC 57.312 36.000 0.00 0.00 0.00 3.20
132 133 7.461749 TCAACTATTCCACCAAAAATCTCTCT 58.538 34.615 0.00 0.00 0.00 3.10
133 134 7.607991 TCAACTATTCCACCAAAAATCTCTCTC 59.392 37.037 0.00 0.00 0.00 3.20
134 135 6.418946 ACTATTCCACCAAAAATCTCTCTCC 58.581 40.000 0.00 0.00 0.00 3.71
135 136 3.721087 TCCACCAAAAATCTCTCTCCC 57.279 47.619 0.00 0.00 0.00 4.30
136 137 3.260205 TCCACCAAAAATCTCTCTCCCT 58.740 45.455 0.00 0.00 0.00 4.20
137 138 3.657727 TCCACCAAAAATCTCTCTCCCTT 59.342 43.478 0.00 0.00 0.00 3.95
138 139 4.013050 CCACCAAAAATCTCTCTCCCTTC 58.987 47.826 0.00 0.00 0.00 3.46
139 140 4.263683 CCACCAAAAATCTCTCTCCCTTCT 60.264 45.833 0.00 0.00 0.00 2.85
140 141 5.045578 CCACCAAAAATCTCTCTCCCTTCTA 60.046 44.000 0.00 0.00 0.00 2.10
141 142 6.476378 CACCAAAAATCTCTCTCCCTTCTAA 58.524 40.000 0.00 0.00 0.00 2.10
142 143 6.372937 CACCAAAAATCTCTCTCCCTTCTAAC 59.627 42.308 0.00 0.00 0.00 2.34
143 144 6.044404 ACCAAAAATCTCTCTCCCTTCTAACA 59.956 38.462 0.00 0.00 0.00 2.41
144 145 6.597280 CCAAAAATCTCTCTCCCTTCTAACAG 59.403 42.308 0.00 0.00 0.00 3.16
145 146 6.943899 AAAATCTCTCTCCCTTCTAACAGT 57.056 37.500 0.00 0.00 0.00 3.55
146 147 6.943899 AAATCTCTCTCCCTTCTAACAGTT 57.056 37.500 0.00 0.00 0.00 3.16
147 148 6.943899 AATCTCTCTCCCTTCTAACAGTTT 57.056 37.500 0.00 0.00 0.00 2.66
148 149 8.437274 AAATCTCTCTCCCTTCTAACAGTTTA 57.563 34.615 0.00 0.00 0.00 2.01
149 150 7.654022 ATCTCTCTCCCTTCTAACAGTTTAG 57.346 40.000 0.00 0.00 36.73 1.85
150 151 6.791371 TCTCTCTCCCTTCTAACAGTTTAGA 58.209 40.000 0.00 0.00 41.72 2.10
151 152 7.415086 TCTCTCTCCCTTCTAACAGTTTAGAT 58.585 38.462 0.00 0.00 42.71 1.98
152 153 7.558444 TCTCTCTCCCTTCTAACAGTTTAGATC 59.442 40.741 0.00 0.00 42.71 2.75
153 154 7.182760 TCTCTCCCTTCTAACAGTTTAGATCA 58.817 38.462 0.00 0.00 42.71 2.92
154 155 7.122948 TCTCTCCCTTCTAACAGTTTAGATCAC 59.877 40.741 0.00 0.00 42.71 3.06
155 156 5.962433 TCCCTTCTAACAGTTTAGATCACG 58.038 41.667 0.00 0.00 42.71 4.35
156 157 5.105473 TCCCTTCTAACAGTTTAGATCACGG 60.105 44.000 0.00 0.00 42.71 4.94
157 158 5.105473 CCCTTCTAACAGTTTAGATCACGGA 60.105 44.000 0.00 0.00 42.71 4.69
158 159 5.805994 CCTTCTAACAGTTTAGATCACGGAC 59.194 44.000 0.00 0.00 42.71 4.79
159 160 5.970317 TCTAACAGTTTAGATCACGGACA 57.030 39.130 0.00 0.00 39.08 4.02
160 161 5.706916 TCTAACAGTTTAGATCACGGACAC 58.293 41.667 0.00 0.00 39.08 3.67
161 162 4.602340 AACAGTTTAGATCACGGACACT 57.398 40.909 0.00 0.00 0.00 3.55
162 163 5.717078 AACAGTTTAGATCACGGACACTA 57.283 39.130 0.00 0.00 0.00 2.74
163 164 5.916661 ACAGTTTAGATCACGGACACTAT 57.083 39.130 0.00 0.00 0.00 2.12
164 165 5.651530 ACAGTTTAGATCACGGACACTATG 58.348 41.667 0.00 0.00 0.00 2.23
165 166 5.417894 ACAGTTTAGATCACGGACACTATGA 59.582 40.000 0.00 0.00 0.00 2.15
166 167 6.096987 ACAGTTTAGATCACGGACACTATGAT 59.903 38.462 0.00 0.00 35.77 2.45
167 168 6.638873 CAGTTTAGATCACGGACACTATGATC 59.361 42.308 5.50 5.50 46.04 2.92
172 173 6.751514 GATCACGGACACTATGATCTAGAT 57.248 41.667 4.47 4.47 43.55 1.98
173 174 5.948992 TCACGGACACTATGATCTAGATG 57.051 43.478 10.74 0.00 0.00 2.90
174 175 5.621193 TCACGGACACTATGATCTAGATGA 58.379 41.667 10.74 1.00 0.00 2.92
175 176 6.241645 TCACGGACACTATGATCTAGATGAT 58.758 40.000 10.74 10.17 38.27 2.45
190 191 8.971032 ATCTAGATGATCTTTATGGAGGAAGT 57.029 34.615 3.89 0.00 0.00 3.01
192 193 9.527157 TCTAGATGATCTTTATGGAGGAAGTAG 57.473 37.037 0.00 0.00 0.00 2.57
193 194 9.308000 CTAGATGATCTTTATGGAGGAAGTAGT 57.692 37.037 0.00 0.00 0.00 2.73
194 195 8.560124 AGATGATCTTTATGGAGGAAGTAGTT 57.440 34.615 0.00 0.00 0.00 2.24
195 196 8.997734 AGATGATCTTTATGGAGGAAGTAGTTT 58.002 33.333 0.00 0.00 0.00 2.66
196 197 9.620259 GATGATCTTTATGGAGGAAGTAGTTTT 57.380 33.333 0.00 0.00 0.00 2.43
197 198 9.620259 ATGATCTTTATGGAGGAAGTAGTTTTC 57.380 33.333 0.00 0.00 0.00 2.29
198 199 8.602424 TGATCTTTATGGAGGAAGTAGTTTTCA 58.398 33.333 0.00 0.00 0.00 2.69
199 200 9.620259 GATCTTTATGGAGGAAGTAGTTTTCAT 57.380 33.333 0.00 0.00 0.00 2.57
202 203 8.732746 TTTATGGAGGAAGTAGTTTTCATAGC 57.267 34.615 0.00 0.00 0.00 2.97
203 204 5.755409 TGGAGGAAGTAGTTTTCATAGCA 57.245 39.130 0.00 0.00 0.00 3.49
204 205 6.313519 TGGAGGAAGTAGTTTTCATAGCAT 57.686 37.500 0.00 0.00 0.00 3.79
205 206 7.432148 TGGAGGAAGTAGTTTTCATAGCATA 57.568 36.000 0.00 0.00 0.00 3.14
206 207 7.272978 TGGAGGAAGTAGTTTTCATAGCATAC 58.727 38.462 0.00 0.00 0.00 2.39
207 208 7.125811 TGGAGGAAGTAGTTTTCATAGCATACT 59.874 37.037 0.00 0.00 0.00 2.12
208 209 8.639761 GGAGGAAGTAGTTTTCATAGCATACTA 58.360 37.037 0.00 0.00 0.00 1.82
267 268 7.703058 AAATTTGATCCAAATACGAAGGAGT 57.297 32.000 5.48 0.00 42.32 3.85
268 269 6.927294 ATTTGATCCAAATACGAAGGAGTC 57.073 37.500 3.36 0.00 41.50 3.36
269 270 5.677319 TTGATCCAAATACGAAGGAGTCT 57.323 39.130 0.00 0.00 34.40 3.24
270 271 6.785337 TTGATCCAAATACGAAGGAGTCTA 57.215 37.500 0.00 0.00 34.40 2.59
271 272 6.785337 TGATCCAAATACGAAGGAGTCTAA 57.215 37.500 0.00 0.00 34.40 2.10
272 273 7.361457 TGATCCAAATACGAAGGAGTCTAAT 57.639 36.000 0.00 0.00 34.40 1.73
273 274 8.473358 TGATCCAAATACGAAGGAGTCTAATA 57.527 34.615 0.00 0.00 34.40 0.98
274 275 8.920174 TGATCCAAATACGAAGGAGTCTAATAA 58.080 33.333 0.00 0.00 34.40 1.40
275 276 9.760077 GATCCAAATACGAAGGAGTCTAATAAA 57.240 33.333 0.00 0.00 34.40 1.40
276 277 8.937634 TCCAAATACGAAGGAGTCTAATAAAC 57.062 34.615 0.00 0.00 0.00 2.01
277 278 7.983484 TCCAAATACGAAGGAGTCTAATAAACC 59.017 37.037 0.00 0.00 0.00 3.27
278 279 7.226128 CCAAATACGAAGGAGTCTAATAAACCC 59.774 40.741 0.00 0.00 0.00 4.11
279 280 4.382345 ACGAAGGAGTCTAATAAACCCG 57.618 45.455 0.00 0.00 0.00 5.28
280 281 3.131755 ACGAAGGAGTCTAATAAACCCGG 59.868 47.826 0.00 0.00 0.00 5.73
281 282 3.492137 CGAAGGAGTCTAATAAACCCGGG 60.492 52.174 22.25 22.25 0.00 5.73
282 283 1.767088 AGGAGTCTAATAAACCCGGGC 59.233 52.381 24.08 0.00 0.00 6.13
283 284 1.539712 GGAGTCTAATAAACCCGGGCG 60.540 57.143 24.08 0.00 0.00 6.13
284 285 0.466963 AGTCTAATAAACCCGGGCGG 59.533 55.000 24.08 0.00 37.81 6.13
285 286 1.146707 TCTAATAAACCCGGGCGGC 59.853 57.895 24.08 0.00 33.26 6.53
286 287 2.203042 TAATAAACCCGGGCGGCG 60.203 61.111 24.08 0.51 33.26 6.46
287 288 2.647680 CTAATAAACCCGGGCGGCGA 62.648 60.000 24.08 1.18 33.26 5.54
288 289 2.249413 TAATAAACCCGGGCGGCGAA 62.249 55.000 24.08 0.00 33.26 4.70
289 290 3.625348 ATAAACCCGGGCGGCGAAA 62.625 57.895 24.08 0.00 33.26 3.46
293 294 4.540735 CCCGGGCGGCGAAAGTAT 62.541 66.667 12.98 0.00 0.00 2.12
294 295 2.418356 CCGGGCGGCGAAAGTATA 59.582 61.111 12.98 0.00 0.00 1.47
295 296 1.227321 CCGGGCGGCGAAAGTATAA 60.227 57.895 12.98 0.00 0.00 0.98
296 297 0.601841 CCGGGCGGCGAAAGTATAAT 60.602 55.000 12.98 0.00 0.00 1.28
297 298 0.511221 CGGGCGGCGAAAGTATAATG 59.489 55.000 12.98 0.00 0.00 1.90
298 299 1.589803 GGGCGGCGAAAGTATAATGT 58.410 50.000 12.98 0.00 0.00 2.71
299 300 2.758009 GGGCGGCGAAAGTATAATGTA 58.242 47.619 12.98 0.00 0.00 2.29
300 301 3.132925 GGGCGGCGAAAGTATAATGTAA 58.867 45.455 12.98 0.00 0.00 2.41
301 302 3.560896 GGGCGGCGAAAGTATAATGTAAA 59.439 43.478 12.98 0.00 0.00 2.01
302 303 4.035441 GGGCGGCGAAAGTATAATGTAAAA 59.965 41.667 12.98 0.00 0.00 1.52
303 304 5.448904 GGGCGGCGAAAGTATAATGTAAAAA 60.449 40.000 12.98 0.00 0.00 1.94
325 326 7.923414 AAAAAGATGCGTATTCCTCTAAGTT 57.077 32.000 0.00 0.00 0.00 2.66
326 327 7.923414 AAAAGATGCGTATTCCTCTAAGTTT 57.077 32.000 0.00 0.00 0.00 2.66
327 328 7.923414 AAAGATGCGTATTCCTCTAAGTTTT 57.077 32.000 0.00 0.00 0.00 2.43
328 329 7.923414 AAGATGCGTATTCCTCTAAGTTTTT 57.077 32.000 0.00 0.00 0.00 1.94
329 330 9.444600 AAAGATGCGTATTCCTCTAAGTTTTTA 57.555 29.630 0.00 0.00 0.00 1.52
330 331 8.649973 AGATGCGTATTCCTCTAAGTTTTTAG 57.350 34.615 0.00 0.00 38.09 1.85
331 332 7.711339 AGATGCGTATTCCTCTAAGTTTTTAGG 59.289 37.037 0.00 0.00 37.47 2.69
332 333 6.110707 TGCGTATTCCTCTAAGTTTTTAGGG 58.889 40.000 0.00 0.00 37.16 3.53
333 334 5.007430 GCGTATTCCTCTAAGTTTTTAGGGC 59.993 44.000 0.00 0.00 36.26 5.19
334 335 6.346896 CGTATTCCTCTAAGTTTTTAGGGCT 58.653 40.000 0.00 0.00 36.26 5.19
335 336 6.479331 CGTATTCCTCTAAGTTTTTAGGGCTC 59.521 42.308 0.00 0.00 36.26 4.70
336 337 4.838904 TCCTCTAAGTTTTTAGGGCTCC 57.161 45.455 0.00 0.00 36.26 4.70
337 338 4.436079 TCCTCTAAGTTTTTAGGGCTCCT 58.564 43.478 0.00 0.00 36.26 3.69
338 339 4.850386 TCCTCTAAGTTTTTAGGGCTCCTT 59.150 41.667 0.00 0.00 36.26 3.36
339 340 5.312443 TCCTCTAAGTTTTTAGGGCTCCTTT 59.688 40.000 0.00 0.00 36.26 3.11
340 341 5.416013 CCTCTAAGTTTTTAGGGCTCCTTTG 59.584 44.000 0.00 0.00 36.26 2.77
341 342 6.195600 TCTAAGTTTTTAGGGCTCCTTTGA 57.804 37.500 0.00 0.00 37.47 2.69
342 343 6.790319 TCTAAGTTTTTAGGGCTCCTTTGAT 58.210 36.000 0.00 0.00 37.47 2.57
343 344 7.238710 TCTAAGTTTTTAGGGCTCCTTTGATT 58.761 34.615 0.00 0.00 37.47 2.57
344 345 5.984695 AGTTTTTAGGGCTCCTTTGATTC 57.015 39.130 0.00 0.00 34.61 2.52
345 346 5.393866 AGTTTTTAGGGCTCCTTTGATTCA 58.606 37.500 0.00 0.00 34.61 2.57
346 347 5.838521 AGTTTTTAGGGCTCCTTTGATTCAA 59.161 36.000 0.00 0.00 34.61 2.69
347 348 6.326323 AGTTTTTAGGGCTCCTTTGATTCAAA 59.674 34.615 11.19 11.19 34.61 2.69
359 360 4.782019 TTGATTCAAAGGAATTCGGTGG 57.218 40.909 0.00 0.00 43.69 4.61
360 361 3.088532 TGATTCAAAGGAATTCGGTGGG 58.911 45.455 0.00 0.00 43.69 4.61
361 362 2.961531 TTCAAAGGAATTCGGTGGGA 57.038 45.000 0.00 0.00 0.00 4.37
362 363 2.194201 TCAAAGGAATTCGGTGGGAC 57.806 50.000 0.00 0.00 0.00 4.46
363 364 1.702957 TCAAAGGAATTCGGTGGGACT 59.297 47.619 0.00 0.00 0.00 3.85
364 365 2.107552 TCAAAGGAATTCGGTGGGACTT 59.892 45.455 0.00 0.00 0.00 3.01
365 366 2.890945 CAAAGGAATTCGGTGGGACTTT 59.109 45.455 0.00 0.00 0.00 2.66
366 367 2.971901 AGGAATTCGGTGGGACTTTT 57.028 45.000 0.00 0.00 0.00 2.27
367 368 2.514803 AGGAATTCGGTGGGACTTTTG 58.485 47.619 0.00 0.00 0.00 2.44
368 369 2.107552 AGGAATTCGGTGGGACTTTTGA 59.892 45.455 0.00 0.00 0.00 2.69
369 370 2.888414 GGAATTCGGTGGGACTTTTGAA 59.112 45.455 0.00 0.00 0.00 2.69
370 371 3.057526 GGAATTCGGTGGGACTTTTGAAG 60.058 47.826 0.00 0.00 0.00 3.02
371 372 1.975660 TTCGGTGGGACTTTTGAAGG 58.024 50.000 0.00 0.00 0.00 3.46
372 373 0.109723 TCGGTGGGACTTTTGAAGGG 59.890 55.000 0.00 0.00 0.00 3.95
373 374 0.179001 CGGTGGGACTTTTGAAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
374 375 1.752788 CGGTGGGACTTTTGAAGGGTT 60.753 52.381 0.00 0.00 0.00 4.11
375 376 1.686587 GGTGGGACTTTTGAAGGGTTG 59.313 52.381 0.00 0.00 0.00 3.77
376 377 2.661718 GTGGGACTTTTGAAGGGTTGA 58.338 47.619 0.00 0.00 0.00 3.18
377 378 3.028130 GTGGGACTTTTGAAGGGTTGAA 58.972 45.455 0.00 0.00 0.00 2.69
378 379 3.449377 GTGGGACTTTTGAAGGGTTGAAA 59.551 43.478 0.00 0.00 0.00 2.69
379 380 4.100963 GTGGGACTTTTGAAGGGTTGAAAT 59.899 41.667 0.00 0.00 0.00 2.17
380 381 4.343814 TGGGACTTTTGAAGGGTTGAAATC 59.656 41.667 0.00 0.00 0.00 2.17
381 382 4.262463 GGGACTTTTGAAGGGTTGAAATCC 60.262 45.833 0.00 0.00 0.00 3.01
382 383 4.588951 GGACTTTTGAAGGGTTGAAATCCT 59.411 41.667 0.00 0.00 34.29 3.24
383 384 5.773176 GGACTTTTGAAGGGTTGAAATCCTA 59.227 40.000 0.00 0.00 32.21 2.94
384 385 6.266786 GGACTTTTGAAGGGTTGAAATCCTAA 59.733 38.462 0.00 0.00 32.21 2.69
385 386 7.290110 ACTTTTGAAGGGTTGAAATCCTAAG 57.710 36.000 0.00 0.00 32.21 2.18
386 387 6.267699 ACTTTTGAAGGGTTGAAATCCTAAGG 59.732 38.462 0.00 0.00 32.21 2.69
387 388 5.592587 TTGAAGGGTTGAAATCCTAAGGA 57.407 39.130 0.00 0.00 35.55 3.36
388 389 5.796502 TGAAGGGTTGAAATCCTAAGGAT 57.203 39.130 0.00 0.00 45.46 3.24
414 415 8.568732 TTTTTCCTACATTTGTCGTTTGATTC 57.431 30.769 0.00 0.00 0.00 2.52
415 416 6.869315 TTCCTACATTTGTCGTTTGATTCA 57.131 33.333 0.00 0.00 0.00 2.57
416 417 6.236017 TCCTACATTTGTCGTTTGATTCAC 57.764 37.500 0.00 0.00 0.00 3.18
417 418 5.760743 TCCTACATTTGTCGTTTGATTCACA 59.239 36.000 0.00 0.00 0.00 3.58
418 419 6.073276 TCCTACATTTGTCGTTTGATTCACAG 60.073 38.462 0.00 0.00 0.00 3.66
419 420 4.858935 ACATTTGTCGTTTGATTCACAGG 58.141 39.130 0.00 0.00 0.00 4.00
420 421 4.578516 ACATTTGTCGTTTGATTCACAGGA 59.421 37.500 0.00 0.00 0.00 3.86
421 422 5.241506 ACATTTGTCGTTTGATTCACAGGAT 59.758 36.000 0.00 0.00 0.00 3.24
422 423 5.766150 TTTGTCGTTTGATTCACAGGATT 57.234 34.783 0.00 0.00 0.00 3.01
423 424 4.747540 TGTCGTTTGATTCACAGGATTG 57.252 40.909 0.00 0.00 0.00 2.67
424 425 4.384940 TGTCGTTTGATTCACAGGATTGA 58.615 39.130 0.00 0.00 0.00 2.57
425 426 4.819088 TGTCGTTTGATTCACAGGATTGAA 59.181 37.500 0.00 0.00 39.79 2.69
426 427 5.147162 GTCGTTTGATTCACAGGATTGAAC 58.853 41.667 0.00 0.00 38.31 3.18
427 428 4.215399 TCGTTTGATTCACAGGATTGAACC 59.785 41.667 0.00 0.00 38.31 3.62
428 429 4.615912 CGTTTGATTCACAGGATTGAACCC 60.616 45.833 0.00 0.00 38.31 4.11
429 430 4.387026 TTGATTCACAGGATTGAACCCT 57.613 40.909 0.00 0.00 38.31 4.34
430 431 5.512942 TTGATTCACAGGATTGAACCCTA 57.487 39.130 0.00 0.00 38.31 3.53
431 432 5.715439 TGATTCACAGGATTGAACCCTAT 57.285 39.130 0.00 0.00 38.31 2.57
432 433 6.823286 TGATTCACAGGATTGAACCCTATA 57.177 37.500 0.00 0.00 38.31 1.31
433 434 6.830912 TGATTCACAGGATTGAACCCTATAG 58.169 40.000 0.00 0.00 38.31 1.31
434 435 6.615316 TGATTCACAGGATTGAACCCTATAGA 59.385 38.462 0.00 0.00 38.31 1.98
435 436 6.884472 TTCACAGGATTGAACCCTATAGAA 57.116 37.500 0.00 0.00 30.29 2.10
436 437 7.451731 TTCACAGGATTGAACCCTATAGAAT 57.548 36.000 0.00 0.00 30.29 2.40
437 438 7.451731 TCACAGGATTGAACCCTATAGAATT 57.548 36.000 0.00 0.00 31.64 2.17
438 439 7.872138 TCACAGGATTGAACCCTATAGAATTT 58.128 34.615 0.00 0.00 31.64 1.82
439 440 8.336235 TCACAGGATTGAACCCTATAGAATTTT 58.664 33.333 0.00 0.00 31.64 1.82
440 441 8.971073 CACAGGATTGAACCCTATAGAATTTTT 58.029 33.333 0.00 0.00 31.64 1.94
491 492 8.964476 TTCATTGAAAATCTAGTATCCACTCC 57.036 34.615 0.00 0.00 36.14 3.85
492 493 8.089625 TCATTGAAAATCTAGTATCCACTCCA 57.910 34.615 0.00 0.00 36.14 3.86
493 494 8.548025 TCATTGAAAATCTAGTATCCACTCCAA 58.452 33.333 0.00 0.00 36.14 3.53
494 495 8.616076 CATTGAAAATCTAGTATCCACTCCAAC 58.384 37.037 0.00 0.00 36.14 3.77
495 496 6.650120 TGAAAATCTAGTATCCACTCCAACC 58.350 40.000 0.00 0.00 36.14 3.77
496 497 6.443849 TGAAAATCTAGTATCCACTCCAACCT 59.556 38.462 0.00 0.00 36.14 3.50
497 498 6.487299 AAATCTAGTATCCACTCCAACCTC 57.513 41.667 0.00 0.00 36.14 3.85
498 499 4.883021 TCTAGTATCCACTCCAACCTCT 57.117 45.455 0.00 0.00 36.14 3.69
499 500 5.208294 TCTAGTATCCACTCCAACCTCTT 57.792 43.478 0.00 0.00 36.14 2.85
500 501 5.590818 TCTAGTATCCACTCCAACCTCTTT 58.409 41.667 0.00 0.00 36.14 2.52
501 502 6.023603 TCTAGTATCCACTCCAACCTCTTTT 58.976 40.000 0.00 0.00 36.14 2.27
502 503 5.584551 AGTATCCACTCCAACCTCTTTTT 57.415 39.130 0.00 0.00 0.00 1.94
522 523 6.709018 TTTTTCAATTCCTTCGTTTCTCCT 57.291 33.333 0.00 0.00 0.00 3.69
523 524 5.689383 TTTCAATTCCTTCGTTTCTCCTG 57.311 39.130 0.00 0.00 0.00 3.86
524 525 4.351874 TCAATTCCTTCGTTTCTCCTGT 57.648 40.909 0.00 0.00 0.00 4.00
525 526 5.477607 TCAATTCCTTCGTTTCTCCTGTA 57.522 39.130 0.00 0.00 0.00 2.74
526 527 5.479306 TCAATTCCTTCGTTTCTCCTGTAG 58.521 41.667 0.00 0.00 0.00 2.74
527 528 3.314541 TTCCTTCGTTTCTCCTGTAGC 57.685 47.619 0.00 0.00 0.00 3.58
528 529 2.244695 TCCTTCGTTTCTCCTGTAGCA 58.755 47.619 0.00 0.00 0.00 3.49
529 530 2.832129 TCCTTCGTTTCTCCTGTAGCAT 59.168 45.455 0.00 0.00 0.00 3.79
530 531 3.119101 TCCTTCGTTTCTCCTGTAGCATC 60.119 47.826 0.00 0.00 0.00 3.91
531 532 3.368427 CCTTCGTTTCTCCTGTAGCATCA 60.368 47.826 0.00 0.00 0.00 3.07
532 533 3.953712 TCGTTTCTCCTGTAGCATCAA 57.046 42.857 0.00 0.00 0.00 2.57
533 534 4.265904 TCGTTTCTCCTGTAGCATCAAA 57.734 40.909 0.00 0.00 0.00 2.69
534 535 3.994392 TCGTTTCTCCTGTAGCATCAAAC 59.006 43.478 0.00 0.00 0.00 2.93
535 536 3.745975 CGTTTCTCCTGTAGCATCAAACA 59.254 43.478 0.00 0.00 0.00 2.83
536 537 4.377431 CGTTTCTCCTGTAGCATCAAACAC 60.377 45.833 0.00 0.00 0.00 3.32
537 538 4.623932 TTCTCCTGTAGCATCAAACACT 57.376 40.909 0.00 0.00 0.00 3.55
538 539 4.193826 TCTCCTGTAGCATCAAACACTC 57.806 45.455 0.00 0.00 0.00 3.51
539 540 3.834813 TCTCCTGTAGCATCAAACACTCT 59.165 43.478 0.00 0.00 0.00 3.24
540 541 5.016831 TCTCCTGTAGCATCAAACACTCTA 58.983 41.667 0.00 0.00 0.00 2.43
541 542 5.658634 TCTCCTGTAGCATCAAACACTCTAT 59.341 40.000 0.00 0.00 0.00 1.98
542 543 5.664457 TCCTGTAGCATCAAACACTCTATG 58.336 41.667 0.00 0.00 0.00 2.23
543 544 4.272018 CCTGTAGCATCAAACACTCTATGC 59.728 45.833 0.00 0.00 43.97 3.14
549 550 6.857777 GCATCAAACACTCTATGCTAATCT 57.142 37.500 0.00 0.00 41.16 2.40
550 551 7.256756 GCATCAAACACTCTATGCTAATCTT 57.743 36.000 0.00 0.00 41.16 2.40
551 552 8.370493 GCATCAAACACTCTATGCTAATCTTA 57.630 34.615 0.00 0.00 41.16 2.10
552 553 8.997323 GCATCAAACACTCTATGCTAATCTTAT 58.003 33.333 0.00 0.00 41.16 1.73
566 567 8.262601 TGCTAATCTTATAGGATTCAAGTGGA 57.737 34.615 12.92 0.63 37.20 4.02
567 568 8.150945 TGCTAATCTTATAGGATTCAAGTGGAC 58.849 37.037 12.92 0.00 37.20 4.02
568 569 8.150945 GCTAATCTTATAGGATTCAAGTGGACA 58.849 37.037 12.92 0.00 37.20 4.02
570 571 8.915057 AATCTTATAGGATTCAAGTGGACATG 57.085 34.615 4.32 0.00 31.08 3.21
571 572 6.291377 TCTTATAGGATTCAAGTGGACATGC 58.709 40.000 0.00 0.00 0.00 4.06
572 573 2.134789 AGGATTCAAGTGGACATGCC 57.865 50.000 0.00 0.00 37.10 4.40
573 574 1.355381 AGGATTCAAGTGGACATGCCA 59.645 47.619 4.93 4.93 46.96 4.92
582 583 1.838112 TGGACATGCCACTCAAATCC 58.162 50.000 4.93 0.00 43.33 3.01
583 584 1.355381 TGGACATGCCACTCAAATCCT 59.645 47.619 4.93 0.00 43.33 3.24
584 585 1.747355 GGACATGCCACTCAAATCCTG 59.253 52.381 0.00 0.00 36.34 3.86
585 586 2.440409 GACATGCCACTCAAATCCTGT 58.560 47.619 0.00 0.00 0.00 4.00
586 587 3.609853 GACATGCCACTCAAATCCTGTA 58.390 45.455 0.00 0.00 0.00 2.74
587 588 4.202441 GACATGCCACTCAAATCCTGTAT 58.798 43.478 0.00 0.00 0.00 2.29
588 589 4.603131 ACATGCCACTCAAATCCTGTATT 58.397 39.130 0.00 0.00 0.00 1.89
589 590 5.018809 ACATGCCACTCAAATCCTGTATTT 58.981 37.500 0.00 0.00 38.36 1.40
590 591 5.126061 ACATGCCACTCAAATCCTGTATTTC 59.874 40.000 0.00 0.00 35.54 2.17
591 592 4.016444 TGCCACTCAAATCCTGTATTTCC 58.984 43.478 0.00 0.00 35.54 3.13
592 593 4.263905 TGCCACTCAAATCCTGTATTTCCT 60.264 41.667 0.00 0.00 35.54 3.36
593 594 4.336713 GCCACTCAAATCCTGTATTTCCTC 59.663 45.833 0.00 0.00 35.54 3.71
594 595 5.749462 CCACTCAAATCCTGTATTTCCTCT 58.251 41.667 0.00 0.00 35.54 3.69
595 596 6.632672 GCCACTCAAATCCTGTATTTCCTCTA 60.633 42.308 0.00 0.00 35.54 2.43
596 597 7.512992 CCACTCAAATCCTGTATTTCCTCTAT 58.487 38.462 0.00 0.00 35.54 1.98
597 598 7.995488 CCACTCAAATCCTGTATTTCCTCTATT 59.005 37.037 0.00 0.00 35.54 1.73
598 599 9.401058 CACTCAAATCCTGTATTTCCTCTATTT 57.599 33.333 0.00 0.00 35.54 1.40
599 600 9.620259 ACTCAAATCCTGTATTTCCTCTATTTC 57.380 33.333 0.00 0.00 35.54 2.17
600 601 8.980481 TCAAATCCTGTATTTCCTCTATTTCC 57.020 34.615 0.00 0.00 35.54 3.13
601 602 8.556589 TCAAATCCTGTATTTCCTCTATTTCCA 58.443 33.333 0.00 0.00 35.54 3.53
602 603 9.359653 CAAATCCTGTATTTCCTCTATTTCCAT 57.640 33.333 0.00 0.00 35.54 3.41
603 604 8.930846 AATCCTGTATTTCCTCTATTTCCATG 57.069 34.615 0.00 0.00 0.00 3.66
604 605 7.451731 TCCTGTATTTCCTCTATTTCCATGT 57.548 36.000 0.00 0.00 0.00 3.21
605 606 7.872138 TCCTGTATTTCCTCTATTTCCATGTT 58.128 34.615 0.00 0.00 0.00 2.71
606 607 8.336235 TCCTGTATTTCCTCTATTTCCATGTTT 58.664 33.333 0.00 0.00 0.00 2.83
607 608 8.971073 CCTGTATTTCCTCTATTTCCATGTTTT 58.029 33.333 0.00 0.00 0.00 2.43
608 609 9.793252 CTGTATTTCCTCTATTTCCATGTTTTG 57.207 33.333 0.00 0.00 0.00 2.44
609 610 9.527157 TGTATTTCCTCTATTTCCATGTTTTGA 57.473 29.630 0.00 0.00 0.00 2.69
614 615 9.927668 TTCCTCTATTTCCATGTTTTGAAAATC 57.072 29.630 0.00 0.00 34.43 2.17
615 616 8.531146 TCCTCTATTTCCATGTTTTGAAAATCC 58.469 33.333 0.00 0.00 34.43 3.01
616 617 8.534496 CCTCTATTTCCATGTTTTGAAAATCCT 58.466 33.333 0.00 0.00 34.43 3.24
617 618 9.362539 CTCTATTTCCATGTTTTGAAAATCCTG 57.637 33.333 0.00 0.00 34.43 3.86
618 619 6.806388 ATTTCCATGTTTTGAAAATCCTGC 57.194 33.333 0.00 0.00 34.43 4.85
619 620 4.952071 TCCATGTTTTGAAAATCCTGCA 57.048 36.364 0.00 0.00 0.00 4.41
620 621 5.287674 TCCATGTTTTGAAAATCCTGCAA 57.712 34.783 0.00 0.00 0.00 4.08
621 622 5.678583 TCCATGTTTTGAAAATCCTGCAAA 58.321 33.333 0.00 0.00 0.00 3.68
622 623 6.297582 TCCATGTTTTGAAAATCCTGCAAAT 58.702 32.000 0.00 0.00 32.27 2.32
623 624 6.427547 TCCATGTTTTGAAAATCCTGCAAATC 59.572 34.615 0.00 0.00 32.27 2.17
624 625 6.205076 CCATGTTTTGAAAATCCTGCAAATCA 59.795 34.615 0.00 0.00 36.35 2.57
625 626 7.255173 CCATGTTTTGAAAATCCTGCAAATCAA 60.255 33.333 0.00 0.00 35.86 2.57
626 627 7.621428 TGTTTTGAAAATCCTGCAAATCAAA 57.379 28.000 0.00 0.00 35.63 2.69
627 628 7.695820 TGTTTTGAAAATCCTGCAAATCAAAG 58.304 30.769 0.00 0.00 37.86 2.77
628 629 7.551974 TGTTTTGAAAATCCTGCAAATCAAAGA 59.448 29.630 0.00 0.00 37.86 2.52
629 630 7.718272 TTTGAAAATCCTGCAAATCAAAGAG 57.282 32.000 0.00 0.00 33.32 2.85
630 631 5.786311 TGAAAATCCTGCAAATCAAAGAGG 58.214 37.500 0.00 0.00 0.00 3.69
631 632 4.813750 AAATCCTGCAAATCAAAGAGGG 57.186 40.909 0.00 0.00 0.00 4.30
632 633 1.549203 TCCTGCAAATCAAAGAGGGC 58.451 50.000 0.00 0.00 0.00 5.19
633 634 0.533951 CCTGCAAATCAAAGAGGGCC 59.466 55.000 0.00 0.00 0.00 5.80
634 635 1.553706 CTGCAAATCAAAGAGGGCCT 58.446 50.000 5.25 5.25 0.00 5.19
635 636 1.897802 CTGCAAATCAAAGAGGGCCTT 59.102 47.619 7.89 0.00 36.47 4.35
636 637 3.091545 CTGCAAATCAAAGAGGGCCTTA 58.908 45.455 7.89 0.00 34.00 2.69
637 638 3.505386 TGCAAATCAAAGAGGGCCTTAA 58.495 40.909 7.89 0.00 34.00 1.85
638 639 4.095946 TGCAAATCAAAGAGGGCCTTAAT 58.904 39.130 7.89 0.00 34.00 1.40
639 640 4.160252 TGCAAATCAAAGAGGGCCTTAATC 59.840 41.667 7.89 0.00 34.00 1.75
671 672 0.984230 TTCGATTTGCCTCCCTGTCT 59.016 50.000 0.00 0.00 0.00 3.41
738 740 0.871722 TCACACGCAAATCGAAAGGG 59.128 50.000 0.00 0.00 41.67 3.95
739 741 0.109781 CACACGCAAATCGAAAGGGG 60.110 55.000 0.00 0.00 41.67 4.79
795 798 1.301716 CCACGTGTCCCTGACCTTG 60.302 63.158 15.65 0.00 0.00 3.61
823 827 1.226547 CACGCAACACCACAACACC 60.227 57.895 0.00 0.00 0.00 4.16
870 881 2.203788 TCCCTCGCCACTCCAACT 60.204 61.111 0.00 0.00 0.00 3.16
872 883 2.286523 CCCTCGCCACTCCAACTCT 61.287 63.158 0.00 0.00 0.00 3.24
896 947 3.338250 ACCGACATGTGGGCCCAT 61.338 61.111 31.45 12.72 30.95 4.00
899 950 1.378382 CGACATGTGGGCCCATCAA 60.378 57.895 31.45 17.85 0.00 2.57
900 951 1.656818 CGACATGTGGGCCCATCAAC 61.657 60.000 31.45 16.27 0.00 3.18
1079 1148 2.660064 CCCCGTCACTAAGCAGGCT 61.660 63.158 0.00 0.00 0.00 4.58
1081 1150 1.293498 CCGTCACTAAGCAGGCTGT 59.707 57.895 17.16 0.00 0.00 4.40
1113 1182 2.525629 TCGGAGAACCACCTGGCA 60.526 61.111 0.00 0.00 39.32 4.92
1470 1539 0.613853 TCCTCTTCGTTGACCCGGAT 60.614 55.000 0.73 0.00 0.00 4.18
1572 1641 0.389817 TTCCATGACTTGCGGACGAG 60.390 55.000 0.00 0.00 0.00 4.18
1631 1703 3.181466 GGGATTTTTGTGTGAGCTTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
1632 1704 4.038642 GGGATTTTTGTGTGAGCTTTGGTA 59.961 41.667 0.00 0.00 0.00 3.25
1690 1762 4.654915 TGTCTGGATTCATCTTCAAAGCA 58.345 39.130 0.00 0.00 0.00 3.91
1843 1915 1.393539 CGTTGTGCGTGGATTTAGGAG 59.606 52.381 0.00 0.00 35.54 3.69
1951 2034 3.769844 GACTGAAACCTCCTGTCTGGATA 59.230 47.826 0.00 0.00 45.16 2.59
2129 2226 1.674221 GCAGGTTTGTGTTTGTGCCAA 60.674 47.619 0.00 0.00 0.00 4.52
2134 2231 3.438434 GGTTTGTGTTTGTGCCAAATGTT 59.562 39.130 4.07 0.00 31.44 2.71
2139 2236 4.153117 TGTGTTTGTGCCAAATGTTTGTTC 59.847 37.500 4.92 0.00 36.45 3.18
2279 2377 5.741510 TGTCATTCGATTTTTGTGTTGACAC 59.258 36.000 7.31 7.31 46.59 3.67
2453 2551 5.989551 TCATGTCATGGATGTATTTGACG 57.010 39.130 12.90 0.00 41.02 4.35
2565 2663 2.674357 GACGCGGATCCTCTAGTCTATC 59.326 54.545 12.47 0.00 0.00 2.08
2714 2812 1.923356 ACGGGCCAATCAATTTCACT 58.077 45.000 4.39 0.00 0.00 3.41
2785 2883 3.375299 ACATCATAAACTTCGCCTTCTGC 59.625 43.478 0.00 0.00 0.00 4.26
2880 2994 2.956333 AGGCCTTGTCCTTTGTTTACAC 59.044 45.455 0.00 0.00 30.82 2.90
2976 3090 9.301897 ACATGCTCTAGTGATTCTACATATGTA 57.698 33.333 14.75 14.75 0.00 2.29
2985 3099 4.330944 TTCTACATATGTAAGCACCCCG 57.669 45.455 16.17 3.06 0.00 5.73
3018 3132 1.133809 ACCTAGTGCCCTTTCCAGCA 61.134 55.000 0.00 0.00 36.44 4.41
3028 3142 3.055891 GCCCTTTCCAGCACATATGTTTT 60.056 43.478 5.37 0.00 0.00 2.43
3038 3152 6.750501 CCAGCACATATGTTTTTGAGAGATTG 59.249 38.462 5.37 0.00 0.00 2.67
3106 3220 5.091431 GCAATTCTCATAACACAGCTCAAC 58.909 41.667 0.00 0.00 0.00 3.18
3186 3300 6.644775 TGCTTCGTTTAAATTTTGCATTGAC 58.355 32.000 0.00 0.00 0.00 3.18
3193 3307 7.907563 CGTTTAAATTTTGCATTGACAAACCTT 59.092 29.630 0.00 5.69 39.18 3.50
3209 3323 7.039313 ACAAACCTTACTTTAAAGCTTCCTG 57.961 36.000 15.24 6.89 0.00 3.86
3220 3334 1.767759 AGCTTCCTGCAAGTTGTGTT 58.232 45.000 4.48 0.00 45.94 3.32
3277 3391 7.310361 GTGCATGCACAATTATTTTGTTTTG 57.690 32.000 39.12 0.00 45.53 2.44
3278 3392 6.911511 GTGCATGCACAATTATTTTGTTTTGT 59.088 30.769 39.12 0.00 45.53 2.83
3282 3396 8.956014 CATGCACAATTATTTTGTTTTGTTTCC 58.044 29.630 0.00 0.00 30.23 3.13
3312 3426 7.255491 TGCTCATGCATTTTATTCTACTCTG 57.745 36.000 0.00 0.00 45.31 3.35
3446 3560 0.880278 GTTCGTGCTCAGCAAGACCA 60.880 55.000 15.47 0.00 45.42 4.02
3467 3581 1.134694 GTGATCCCAGCGAAAACGC 59.865 57.895 6.50 6.50 0.00 4.84
3493 3607 4.062293 TCAACAGTTACATGAGTTTCCCG 58.938 43.478 0.00 0.00 0.00 5.14
3543 3657 3.915437 TCCGATTTTGGTTTGAAGAGC 57.085 42.857 0.00 0.00 0.00 4.09
3581 3695 4.322198 CGTAGTAGGGTTTGTACACCACAT 60.322 45.833 0.00 0.00 38.79 3.21
3592 3706 0.108585 ACACCACATTGGCGAAGACT 59.891 50.000 0.00 0.00 42.67 3.24
3600 3714 4.373116 GGCGAAGACTGGTGCCGA 62.373 66.667 0.00 0.00 37.81 5.54
3685 3806 2.040278 TCTTGATGTCCCTGTTTGGAGG 59.960 50.000 0.00 0.00 38.35 4.30
3715 3836 0.804989 GGGGCAATGTCTCTTGAACG 59.195 55.000 0.00 0.00 0.00 3.95
3784 3905 3.624861 CCTTTGATCACTGGACTGTATGC 59.375 47.826 7.25 0.00 0.00 3.14
3826 3948 4.079970 TGTTGTGTACAGTTTTTGGACCA 58.920 39.130 0.00 0.00 40.16 4.02
3894 4039 8.958506 GTATTACCACTTGATATCTACGAGGAT 58.041 37.037 3.98 0.00 0.00 3.24
3895 4040 5.713792 ACCACTTGATATCTACGAGGATG 57.286 43.478 3.98 0.00 0.00 3.51
3931 4090 0.956633 ACTGGATTGTGTTGCTGCAG 59.043 50.000 10.11 10.11 34.85 4.41
4010 4171 1.960689 TGAAGCAAACTTTAGGGGCAC 59.039 47.619 0.00 0.00 35.82 5.01
4255 4416 5.508153 CGTAGCATCTTACTACAGGCAGAAT 60.508 44.000 0.00 0.00 40.03 2.40
4289 4450 6.146021 GGTCATTAAAAATCACAAGTTGGCAG 59.854 38.462 7.96 0.00 0.00 4.85
4325 4486 3.182182 TCGAAATCAGCAAGAGATCACG 58.818 45.455 0.00 0.00 0.00 4.35
4336 4497 4.615949 CAAGAGATCACGACCCTAAGATG 58.384 47.826 0.00 0.00 0.00 2.90
4341 4502 3.014304 TCACGACCCTAAGATGTAGCT 57.986 47.619 0.00 0.00 0.00 3.32
4377 4538 0.761187 TCAGGCTCTTGTGCTTCAGT 59.239 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.482175 GGACCAAATCCTAGTCTATCATATACT 57.518 37.037 0.00 0.00 45.22 2.12
28 29 4.273318 ACAAGATAAGGCAGGACCAAATC 58.727 43.478 0.00 0.00 43.14 2.17
29 30 4.322057 ACAAGATAAGGCAGGACCAAAT 57.678 40.909 0.00 0.00 43.14 2.32
30 31 3.806949 ACAAGATAAGGCAGGACCAAA 57.193 42.857 0.00 0.00 43.14 3.28
31 32 3.844211 AGTACAAGATAAGGCAGGACCAA 59.156 43.478 0.00 0.00 43.14 3.67
32 33 3.450904 AGTACAAGATAAGGCAGGACCA 58.549 45.455 0.00 0.00 43.14 4.02
33 34 4.081087 TGAAGTACAAGATAAGGCAGGACC 60.081 45.833 0.00 0.00 39.61 4.46
34 35 5.086104 TGAAGTACAAGATAAGGCAGGAC 57.914 43.478 0.00 0.00 0.00 3.85
35 36 5.755409 TTGAAGTACAAGATAAGGCAGGA 57.245 39.130 0.00 0.00 34.20 3.86
47 48 4.020543 ACAAAGGCCAACTTGAAGTACAA 58.979 39.130 16.54 0.00 39.96 2.41
48 49 3.626930 ACAAAGGCCAACTTGAAGTACA 58.373 40.909 16.54 0.00 39.96 2.90
49 50 4.820173 AGTACAAAGGCCAACTTGAAGTAC 59.180 41.667 16.54 11.38 39.96 2.73
50 51 5.043737 AGTACAAAGGCCAACTTGAAGTA 57.956 39.130 16.54 1.12 39.96 2.24
51 52 3.883489 GAGTACAAAGGCCAACTTGAAGT 59.117 43.478 16.54 0.00 39.96 3.01
52 53 3.253432 GGAGTACAAAGGCCAACTTGAAG 59.747 47.826 16.54 0.00 39.96 3.02
53 54 3.117663 AGGAGTACAAAGGCCAACTTGAA 60.118 43.478 16.54 0.00 39.96 2.69
54 55 2.441750 AGGAGTACAAAGGCCAACTTGA 59.558 45.455 16.54 1.37 39.96 3.02
55 56 2.863809 AGGAGTACAAAGGCCAACTTG 58.136 47.619 5.01 8.17 39.96 3.16
56 57 3.393278 TGTAGGAGTACAAAGGCCAACTT 59.607 43.478 5.01 0.00 42.52 2.66
57 58 2.976882 TGTAGGAGTACAAAGGCCAACT 59.023 45.455 5.01 0.00 36.15 3.16
58 59 3.412237 TGTAGGAGTACAAAGGCCAAC 57.588 47.619 5.01 0.00 36.15 3.77
59 60 5.968676 ATATGTAGGAGTACAAAGGCCAA 57.031 39.130 5.01 0.00 42.54 4.52
60 61 6.520061 GCATATATGTAGGAGTACAAAGGCCA 60.520 42.308 14.14 0.00 42.54 5.36
61 62 5.875359 GCATATATGTAGGAGTACAAAGGCC 59.125 44.000 14.14 0.00 42.54 5.19
62 63 5.875359 GGCATATATGTAGGAGTACAAAGGC 59.125 44.000 14.14 0.00 42.54 4.35
63 64 6.013725 TGGGCATATATGTAGGAGTACAAAGG 60.014 42.308 14.14 0.00 42.54 3.11
64 65 6.874134 GTGGGCATATATGTAGGAGTACAAAG 59.126 42.308 14.14 0.00 42.54 2.77
65 66 6.517697 CGTGGGCATATATGTAGGAGTACAAA 60.518 42.308 14.14 0.00 42.54 2.83
66 67 5.047590 CGTGGGCATATATGTAGGAGTACAA 60.048 44.000 14.14 0.00 42.54 2.41
67 68 4.461431 CGTGGGCATATATGTAGGAGTACA 59.539 45.833 14.14 0.51 43.43 2.90
68 69 4.703575 TCGTGGGCATATATGTAGGAGTAC 59.296 45.833 14.14 4.16 0.00 2.73
69 70 4.925836 TCGTGGGCATATATGTAGGAGTA 58.074 43.478 14.14 0.00 0.00 2.59
70 71 3.764434 CTCGTGGGCATATATGTAGGAGT 59.236 47.826 14.14 0.00 0.00 3.85
71 72 3.131223 CCTCGTGGGCATATATGTAGGAG 59.869 52.174 14.14 17.13 0.00 3.69
72 73 3.096852 CCTCGTGGGCATATATGTAGGA 58.903 50.000 14.14 10.45 0.00 2.94
73 74 3.526931 CCTCGTGGGCATATATGTAGG 57.473 52.381 14.14 7.89 0.00 3.18
85 86 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
86 87 1.959042 ATATTGCTTGAGCCTCGTGG 58.041 50.000 0.00 0.00 41.18 4.94
87 88 4.309933 TGATATATTGCTTGAGCCTCGTG 58.690 43.478 0.00 0.00 41.18 4.35
88 89 4.607293 TGATATATTGCTTGAGCCTCGT 57.393 40.909 0.00 0.00 41.18 4.18
89 90 4.993584 AGTTGATATATTGCTTGAGCCTCG 59.006 41.667 0.00 0.00 41.18 4.63
90 91 8.558973 AATAGTTGATATATTGCTTGAGCCTC 57.441 34.615 0.00 0.00 41.18 4.70
91 92 7.609532 GGAATAGTTGATATATTGCTTGAGCCT 59.390 37.037 0.00 0.00 41.18 4.58
92 93 7.391554 TGGAATAGTTGATATATTGCTTGAGCC 59.608 37.037 0.00 0.00 41.18 4.70
93 94 8.233190 GTGGAATAGTTGATATATTGCTTGAGC 58.767 37.037 0.00 0.00 42.50 4.26
94 95 8.725148 GGTGGAATAGTTGATATATTGCTTGAG 58.275 37.037 0.00 0.00 33.53 3.02
95 96 8.217111 TGGTGGAATAGTTGATATATTGCTTGA 58.783 33.333 0.00 0.00 33.53 3.02
96 97 8.394971 TGGTGGAATAGTTGATATATTGCTTG 57.605 34.615 0.00 0.00 33.53 4.01
97 98 8.995027 TTGGTGGAATAGTTGATATATTGCTT 57.005 30.769 0.00 0.00 33.53 3.91
98 99 8.995027 TTTGGTGGAATAGTTGATATATTGCT 57.005 30.769 0.00 0.00 33.53 3.91
104 105 9.927081 AGAGATTTTTGGTGGAATAGTTGATAT 57.073 29.630 0.00 0.00 0.00 1.63
105 106 9.396022 GAGAGATTTTTGGTGGAATAGTTGATA 57.604 33.333 0.00 0.00 0.00 2.15
106 107 8.112183 AGAGAGATTTTTGGTGGAATAGTTGAT 58.888 33.333 0.00 0.00 0.00 2.57
107 108 7.461749 AGAGAGATTTTTGGTGGAATAGTTGA 58.538 34.615 0.00 0.00 0.00 3.18
108 109 7.148171 GGAGAGAGATTTTTGGTGGAATAGTTG 60.148 40.741 0.00 0.00 0.00 3.16
109 110 6.887002 GGAGAGAGATTTTTGGTGGAATAGTT 59.113 38.462 0.00 0.00 0.00 2.24
110 111 6.418946 GGAGAGAGATTTTTGGTGGAATAGT 58.581 40.000 0.00 0.00 0.00 2.12
111 112 5.825151 GGGAGAGAGATTTTTGGTGGAATAG 59.175 44.000 0.00 0.00 0.00 1.73
112 113 5.492524 AGGGAGAGAGATTTTTGGTGGAATA 59.507 40.000 0.00 0.00 0.00 1.75
113 114 4.293368 AGGGAGAGAGATTTTTGGTGGAAT 59.707 41.667 0.00 0.00 0.00 3.01
114 115 3.657727 AGGGAGAGAGATTTTTGGTGGAA 59.342 43.478 0.00 0.00 0.00 3.53
115 116 3.260205 AGGGAGAGAGATTTTTGGTGGA 58.740 45.455 0.00 0.00 0.00 4.02
116 117 3.728385 AGGGAGAGAGATTTTTGGTGG 57.272 47.619 0.00 0.00 0.00 4.61
117 118 4.916183 AGAAGGGAGAGAGATTTTTGGTG 58.084 43.478 0.00 0.00 0.00 4.17
118 119 6.044404 TGTTAGAAGGGAGAGAGATTTTTGGT 59.956 38.462 0.00 0.00 0.00 3.67
119 120 6.476378 TGTTAGAAGGGAGAGAGATTTTTGG 58.524 40.000 0.00 0.00 0.00 3.28
120 121 7.164803 ACTGTTAGAAGGGAGAGAGATTTTTG 58.835 38.462 0.00 0.00 0.00 2.44
121 122 7.323052 ACTGTTAGAAGGGAGAGAGATTTTT 57.677 36.000 0.00 0.00 0.00 1.94
122 123 6.943899 ACTGTTAGAAGGGAGAGAGATTTT 57.056 37.500 0.00 0.00 0.00 1.82
123 124 6.943899 AACTGTTAGAAGGGAGAGAGATTT 57.056 37.500 0.00 0.00 0.00 2.17
124 125 6.943899 AAACTGTTAGAAGGGAGAGAGATT 57.056 37.500 0.00 0.00 0.00 2.40
125 126 7.415086 TCTAAACTGTTAGAAGGGAGAGAGAT 58.585 38.462 0.00 0.00 42.24 2.75
126 127 6.791371 TCTAAACTGTTAGAAGGGAGAGAGA 58.209 40.000 0.00 0.00 42.24 3.10
127 128 7.340743 TGATCTAAACTGTTAGAAGGGAGAGAG 59.659 40.741 0.00 0.00 46.83 3.20
128 129 7.122948 GTGATCTAAACTGTTAGAAGGGAGAGA 59.877 40.741 0.00 0.00 46.83 3.10
129 130 7.262048 GTGATCTAAACTGTTAGAAGGGAGAG 58.738 42.308 0.00 0.00 46.83 3.20
130 131 6.127703 CGTGATCTAAACTGTTAGAAGGGAGA 60.128 42.308 0.00 0.00 46.83 3.71
131 132 6.037098 CGTGATCTAAACTGTTAGAAGGGAG 58.963 44.000 0.00 0.00 46.83 4.30
132 133 5.105473 CCGTGATCTAAACTGTTAGAAGGGA 60.105 44.000 0.00 0.00 46.83 4.20
133 134 5.105473 TCCGTGATCTAAACTGTTAGAAGGG 60.105 44.000 0.00 1.75 46.83 3.95
134 135 5.805994 GTCCGTGATCTAAACTGTTAGAAGG 59.194 44.000 0.00 3.42 46.83 3.46
135 136 6.308282 GTGTCCGTGATCTAAACTGTTAGAAG 59.692 42.308 0.00 0.00 46.83 2.85
136 137 6.015688 AGTGTCCGTGATCTAAACTGTTAGAA 60.016 38.462 0.00 0.00 46.83 2.10
138 139 5.710984 AGTGTCCGTGATCTAAACTGTTAG 58.289 41.667 0.00 0.00 38.50 2.34
139 140 5.717078 AGTGTCCGTGATCTAAACTGTTA 57.283 39.130 0.00 0.00 0.00 2.41
140 141 4.602340 AGTGTCCGTGATCTAAACTGTT 57.398 40.909 0.00 0.00 0.00 3.16
141 142 5.417894 TCATAGTGTCCGTGATCTAAACTGT 59.582 40.000 0.00 0.00 0.00 3.55
142 143 5.891451 TCATAGTGTCCGTGATCTAAACTG 58.109 41.667 0.00 0.00 0.00 3.16
143 144 6.716934 ATCATAGTGTCCGTGATCTAAACT 57.283 37.500 0.00 0.00 0.00 2.66
144 145 6.994868 GATCATAGTGTCCGTGATCTAAAC 57.005 41.667 7.20 0.00 42.98 2.01
149 150 6.372937 TCATCTAGATCATAGTGTCCGTGATC 59.627 42.308 1.03 6.50 45.33 2.92
150 151 6.241645 TCATCTAGATCATAGTGTCCGTGAT 58.758 40.000 1.03 0.00 35.42 3.06
151 152 5.621193 TCATCTAGATCATAGTGTCCGTGA 58.379 41.667 1.03 0.00 0.00 4.35
152 153 5.948992 TCATCTAGATCATAGTGTCCGTG 57.051 43.478 1.03 0.00 0.00 4.94
165 166 8.971032 ACTTCCTCCATAAAGATCATCTAGAT 57.029 34.615 0.00 0.00 40.48 1.98
166 167 9.527157 CTACTTCCTCCATAAAGATCATCTAGA 57.473 37.037 0.00 0.00 0.00 2.43
167 168 9.308000 ACTACTTCCTCCATAAAGATCATCTAG 57.692 37.037 0.00 0.00 0.00 2.43
168 169 9.661954 AACTACTTCCTCCATAAAGATCATCTA 57.338 33.333 0.00 0.00 0.00 1.98
169 170 8.560124 AACTACTTCCTCCATAAAGATCATCT 57.440 34.615 0.00 0.00 0.00 2.90
170 171 9.620259 AAAACTACTTCCTCCATAAAGATCATC 57.380 33.333 0.00 0.00 0.00 2.92
171 172 9.620259 GAAAACTACTTCCTCCATAAAGATCAT 57.380 33.333 0.00 0.00 0.00 2.45
172 173 8.602424 TGAAAACTACTTCCTCCATAAAGATCA 58.398 33.333 0.00 0.00 0.00 2.92
173 174 9.620259 ATGAAAACTACTTCCTCCATAAAGATC 57.380 33.333 0.00 0.00 0.00 2.75
176 177 8.831550 GCTATGAAAACTACTTCCTCCATAAAG 58.168 37.037 0.00 0.00 0.00 1.85
177 178 8.325787 TGCTATGAAAACTACTTCCTCCATAAA 58.674 33.333 0.00 0.00 0.00 1.40
178 179 7.857456 TGCTATGAAAACTACTTCCTCCATAA 58.143 34.615 0.00 0.00 0.00 1.90
179 180 7.432148 TGCTATGAAAACTACTTCCTCCATA 57.568 36.000 0.00 0.00 0.00 2.74
180 181 6.313519 TGCTATGAAAACTACTTCCTCCAT 57.686 37.500 0.00 0.00 0.00 3.41
181 182 5.755409 TGCTATGAAAACTACTTCCTCCA 57.245 39.130 0.00 0.00 0.00 3.86
182 183 7.501844 AGTATGCTATGAAAACTACTTCCTCC 58.498 38.462 0.00 0.00 0.00 4.30
241 242 9.238368 ACTCCTTCGTATTTGGATCAAATTTAA 57.762 29.630 10.55 3.94 40.60 1.52
242 243 8.801882 ACTCCTTCGTATTTGGATCAAATTTA 57.198 30.769 10.55 0.00 40.60 1.40
243 244 7.611855 AGACTCCTTCGTATTTGGATCAAATTT 59.388 33.333 10.55 0.00 40.60 1.82
244 245 7.112779 AGACTCCTTCGTATTTGGATCAAATT 58.887 34.615 10.55 0.00 40.60 1.82
245 246 6.653989 AGACTCCTTCGTATTTGGATCAAAT 58.346 36.000 10.21 10.21 44.74 2.32
246 247 6.049955 AGACTCCTTCGTATTTGGATCAAA 57.950 37.500 0.00 0.00 37.75 2.69
247 248 5.677319 AGACTCCTTCGTATTTGGATCAA 57.323 39.130 0.00 0.00 0.00 2.57
248 249 6.785337 TTAGACTCCTTCGTATTTGGATCA 57.215 37.500 0.00 0.00 0.00 2.92
249 250 9.760077 TTTATTAGACTCCTTCGTATTTGGATC 57.240 33.333 0.00 0.00 0.00 3.36
250 251 9.543783 GTTTATTAGACTCCTTCGTATTTGGAT 57.456 33.333 0.00 0.00 0.00 3.41
251 252 7.983484 GGTTTATTAGACTCCTTCGTATTTGGA 59.017 37.037 0.00 0.00 0.00 3.53
252 253 7.226128 GGGTTTATTAGACTCCTTCGTATTTGG 59.774 40.741 0.00 0.00 0.00 3.28
253 254 7.042925 CGGGTTTATTAGACTCCTTCGTATTTG 60.043 40.741 0.00 0.00 0.00 2.32
254 255 6.982724 CGGGTTTATTAGACTCCTTCGTATTT 59.017 38.462 0.00 0.00 0.00 1.40
255 256 6.462067 CCGGGTTTATTAGACTCCTTCGTATT 60.462 42.308 0.00 0.00 0.00 1.89
256 257 5.010415 CCGGGTTTATTAGACTCCTTCGTAT 59.990 44.000 0.00 0.00 0.00 3.06
257 258 4.339247 CCGGGTTTATTAGACTCCTTCGTA 59.661 45.833 0.00 0.00 0.00 3.43
258 259 3.131755 CCGGGTTTATTAGACTCCTTCGT 59.868 47.826 0.00 0.00 0.00 3.85
259 260 3.492137 CCCGGGTTTATTAGACTCCTTCG 60.492 52.174 14.18 0.00 0.00 3.79
260 261 3.743584 GCCCGGGTTTATTAGACTCCTTC 60.744 52.174 24.63 0.00 0.00 3.46
261 262 2.172082 GCCCGGGTTTATTAGACTCCTT 59.828 50.000 24.63 0.00 0.00 3.36
262 263 1.767088 GCCCGGGTTTATTAGACTCCT 59.233 52.381 24.63 0.00 0.00 3.69
263 264 1.539712 CGCCCGGGTTTATTAGACTCC 60.540 57.143 24.63 0.00 0.00 3.85
264 265 1.539712 CCGCCCGGGTTTATTAGACTC 60.540 57.143 24.63 0.00 0.00 3.36
265 266 0.466963 CCGCCCGGGTTTATTAGACT 59.533 55.000 24.63 0.00 0.00 3.24
266 267 1.162181 GCCGCCCGGGTTTATTAGAC 61.162 60.000 24.63 0.00 38.44 2.59
267 268 1.146707 GCCGCCCGGGTTTATTAGA 59.853 57.895 24.63 0.00 38.44 2.10
268 269 2.248835 CGCCGCCCGGGTTTATTAG 61.249 63.158 24.63 3.62 38.44 1.73
269 270 2.203042 CGCCGCCCGGGTTTATTA 60.203 61.111 24.63 0.00 38.44 0.98
270 271 3.625348 TTCGCCGCCCGGGTTTATT 62.625 57.895 24.63 0.00 38.44 1.40
271 272 3.625348 TTTCGCCGCCCGGGTTTAT 62.625 57.895 24.63 0.00 38.44 1.40
272 273 4.326507 TTTCGCCGCCCGGGTTTA 62.327 61.111 24.63 0.06 38.44 2.01
276 277 2.647680 TTATACTTTCGCCGCCCGGG 62.648 60.000 19.09 19.09 37.59 5.73
277 278 0.601841 ATTATACTTTCGCCGCCCGG 60.602 55.000 1.59 1.59 37.59 5.73
278 279 0.511221 CATTATACTTTCGCCGCCCG 59.489 55.000 0.00 0.00 38.61 6.13
279 280 1.589803 ACATTATACTTTCGCCGCCC 58.410 50.000 0.00 0.00 0.00 6.13
280 281 4.799419 TTTACATTATACTTTCGCCGCC 57.201 40.909 0.00 0.00 0.00 6.13
301 302 7.923414 AACTTAGAGGAATACGCATCTTTTT 57.077 32.000 0.00 0.00 0.00 1.94
302 303 7.923414 AAACTTAGAGGAATACGCATCTTTT 57.077 32.000 0.00 0.00 0.00 2.27
303 304 7.923414 AAAACTTAGAGGAATACGCATCTTT 57.077 32.000 0.00 0.00 0.00 2.52
304 305 7.923414 AAAAACTTAGAGGAATACGCATCTT 57.077 32.000 0.00 0.00 0.00 2.40
305 306 7.711339 CCTAAAAACTTAGAGGAATACGCATCT 59.289 37.037 0.00 0.00 0.00 2.90
306 307 7.041984 CCCTAAAAACTTAGAGGAATACGCATC 60.042 40.741 0.00 0.00 0.00 3.91
307 308 6.766467 CCCTAAAAACTTAGAGGAATACGCAT 59.234 38.462 0.00 0.00 0.00 4.73
308 309 6.110707 CCCTAAAAACTTAGAGGAATACGCA 58.889 40.000 0.00 0.00 0.00 5.24
309 310 5.007430 GCCCTAAAAACTTAGAGGAATACGC 59.993 44.000 0.00 0.00 0.00 4.42
310 311 6.346896 AGCCCTAAAAACTTAGAGGAATACG 58.653 40.000 0.00 0.00 0.00 3.06
311 312 6.766944 GGAGCCCTAAAAACTTAGAGGAATAC 59.233 42.308 0.00 0.00 0.00 1.89
312 313 6.677076 AGGAGCCCTAAAAACTTAGAGGAATA 59.323 38.462 0.00 0.00 28.47 1.75
313 314 5.492887 AGGAGCCCTAAAAACTTAGAGGAAT 59.507 40.000 0.00 0.00 28.47 3.01
314 315 4.850386 AGGAGCCCTAAAAACTTAGAGGAA 59.150 41.667 0.00 0.00 28.47 3.36
315 316 4.436079 AGGAGCCCTAAAAACTTAGAGGA 58.564 43.478 0.00 0.00 28.47 3.71
316 317 4.846168 AGGAGCCCTAAAAACTTAGAGG 57.154 45.455 0.00 0.00 28.47 3.69
317 318 6.238648 TCAAAGGAGCCCTAAAAACTTAGAG 58.761 40.000 0.00 0.00 31.13 2.43
318 319 6.195600 TCAAAGGAGCCCTAAAAACTTAGA 57.804 37.500 0.00 0.00 31.13 2.10
319 320 7.176690 TGAATCAAAGGAGCCCTAAAAACTTAG 59.823 37.037 0.00 0.00 31.13 2.18
320 321 7.007723 TGAATCAAAGGAGCCCTAAAAACTTA 58.992 34.615 0.00 0.00 31.13 2.24
321 322 5.838521 TGAATCAAAGGAGCCCTAAAAACTT 59.161 36.000 0.00 0.00 31.13 2.66
322 323 5.393866 TGAATCAAAGGAGCCCTAAAAACT 58.606 37.500 0.00 0.00 31.13 2.66
323 324 5.722021 TGAATCAAAGGAGCCCTAAAAAC 57.278 39.130 0.00 0.00 31.13 2.43
324 325 6.739331 TTTGAATCAAAGGAGCCCTAAAAA 57.261 33.333 4.03 0.00 31.13 1.94
325 326 6.345096 CTTTGAATCAAAGGAGCCCTAAAA 57.655 37.500 23.96 0.00 44.75 1.52
326 327 5.982890 CTTTGAATCAAAGGAGCCCTAAA 57.017 39.130 23.96 0.00 44.75 1.85
337 338 4.021544 CCCACCGAATTCCTTTGAATCAAA 60.022 41.667 8.25 8.25 40.34 2.69
338 339 3.509575 CCCACCGAATTCCTTTGAATCAA 59.490 43.478 0.00 0.00 40.34 2.57
339 340 3.088532 CCCACCGAATTCCTTTGAATCA 58.911 45.455 0.00 0.00 40.34 2.57
340 341 3.128764 GTCCCACCGAATTCCTTTGAATC 59.871 47.826 0.00 0.00 40.34 2.52
341 342 3.089284 GTCCCACCGAATTCCTTTGAAT 58.911 45.455 0.00 0.00 43.08 2.57
342 343 2.107552 AGTCCCACCGAATTCCTTTGAA 59.892 45.455 0.00 0.00 34.33 2.69
343 344 1.702957 AGTCCCACCGAATTCCTTTGA 59.297 47.619 0.00 0.00 0.00 2.69
344 345 2.200373 AGTCCCACCGAATTCCTTTG 57.800 50.000 0.00 0.00 0.00 2.77
345 346 2.971901 AAGTCCCACCGAATTCCTTT 57.028 45.000 0.00 0.00 0.00 3.11
346 347 2.890945 CAAAAGTCCCACCGAATTCCTT 59.109 45.455 0.00 0.00 0.00 3.36
347 348 2.107552 TCAAAAGTCCCACCGAATTCCT 59.892 45.455 0.00 0.00 0.00 3.36
348 349 2.510613 TCAAAAGTCCCACCGAATTCC 58.489 47.619 0.00 0.00 0.00 3.01
349 350 3.057526 CCTTCAAAAGTCCCACCGAATTC 60.058 47.826 0.00 0.00 0.00 2.17
350 351 2.890945 CCTTCAAAAGTCCCACCGAATT 59.109 45.455 0.00 0.00 0.00 2.17
351 352 2.514803 CCTTCAAAAGTCCCACCGAAT 58.485 47.619 0.00 0.00 0.00 3.34
352 353 1.477923 CCCTTCAAAAGTCCCACCGAA 60.478 52.381 0.00 0.00 0.00 4.30
353 354 0.109723 CCCTTCAAAAGTCCCACCGA 59.890 55.000 0.00 0.00 0.00 4.69
354 355 0.179001 ACCCTTCAAAAGTCCCACCG 60.179 55.000 0.00 0.00 0.00 4.94
355 356 1.686587 CAACCCTTCAAAAGTCCCACC 59.313 52.381 0.00 0.00 0.00 4.61
356 357 2.661718 TCAACCCTTCAAAAGTCCCAC 58.338 47.619 0.00 0.00 0.00 4.61
357 358 3.390175 TTCAACCCTTCAAAAGTCCCA 57.610 42.857 0.00 0.00 0.00 4.37
358 359 4.262463 GGATTTCAACCCTTCAAAAGTCCC 60.262 45.833 0.00 0.00 0.00 4.46
359 360 4.588951 AGGATTTCAACCCTTCAAAAGTCC 59.411 41.667 0.00 0.00 0.00 3.85
360 361 5.791336 AGGATTTCAACCCTTCAAAAGTC 57.209 39.130 0.00 0.00 0.00 3.01
361 362 6.267699 CCTTAGGATTTCAACCCTTCAAAAGT 59.732 38.462 0.00 0.00 34.11 2.66
362 363 6.493458 TCCTTAGGATTTCAACCCTTCAAAAG 59.507 38.462 0.00 0.00 34.11 2.27
363 364 6.377912 TCCTTAGGATTTCAACCCTTCAAAA 58.622 36.000 0.00 0.00 34.11 2.44
364 365 5.959512 TCCTTAGGATTTCAACCCTTCAAA 58.040 37.500 0.00 0.00 34.11 2.69
365 366 5.592587 TCCTTAGGATTTCAACCCTTCAA 57.407 39.130 0.00 0.00 34.11 2.69
366 367 5.796502 ATCCTTAGGATTTCAACCCTTCA 57.203 39.130 8.15 0.00 39.79 3.02
389 390 8.191446 TGAATCAAACGACAAATGTAGGAAAAA 58.809 29.630 0.00 0.00 0.00 1.94
390 391 7.646130 GTGAATCAAACGACAAATGTAGGAAAA 59.354 33.333 0.00 0.00 0.00 2.29
391 392 7.136119 GTGAATCAAACGACAAATGTAGGAAA 58.864 34.615 0.00 0.00 0.00 3.13
392 393 6.261158 TGTGAATCAAACGACAAATGTAGGAA 59.739 34.615 0.00 0.00 0.00 3.36
393 394 5.760743 TGTGAATCAAACGACAAATGTAGGA 59.239 36.000 0.00 0.00 0.00 2.94
394 395 5.996219 TGTGAATCAAACGACAAATGTAGG 58.004 37.500 0.00 0.00 0.00 3.18
395 396 6.073276 TCCTGTGAATCAAACGACAAATGTAG 60.073 38.462 0.00 0.00 0.00 2.74
396 397 5.760743 TCCTGTGAATCAAACGACAAATGTA 59.239 36.000 0.00 0.00 0.00 2.29
397 398 4.578516 TCCTGTGAATCAAACGACAAATGT 59.421 37.500 0.00 0.00 0.00 2.71
398 399 5.107109 TCCTGTGAATCAAACGACAAATG 57.893 39.130 0.00 0.00 0.00 2.32
399 400 5.964958 ATCCTGTGAATCAAACGACAAAT 57.035 34.783 0.00 0.00 0.00 2.32
400 401 5.298026 TCAATCCTGTGAATCAAACGACAAA 59.702 36.000 0.00 0.00 0.00 2.83
401 402 4.819088 TCAATCCTGTGAATCAAACGACAA 59.181 37.500 0.00 0.00 0.00 3.18
402 403 4.384940 TCAATCCTGTGAATCAAACGACA 58.615 39.130 0.00 0.00 0.00 4.35
403 404 5.147162 GTTCAATCCTGTGAATCAAACGAC 58.853 41.667 0.00 0.00 39.61 4.34
404 405 4.215399 GGTTCAATCCTGTGAATCAAACGA 59.785 41.667 0.00 0.00 39.61 3.85
405 406 4.475944 GGTTCAATCCTGTGAATCAAACG 58.524 43.478 0.00 0.00 39.61 3.60
406 407 4.524328 AGGGTTCAATCCTGTGAATCAAAC 59.476 41.667 0.00 0.00 39.90 2.93
407 408 4.739793 AGGGTTCAATCCTGTGAATCAAA 58.260 39.130 0.00 0.00 39.90 2.69
408 409 4.387026 AGGGTTCAATCCTGTGAATCAA 57.613 40.909 0.00 0.00 39.90 2.57
409 410 5.715439 ATAGGGTTCAATCCTGTGAATCA 57.285 39.130 0.00 0.00 39.90 2.57
410 411 7.067496 TCTATAGGGTTCAATCCTGTGAATC 57.933 40.000 0.00 0.00 39.61 2.52
411 412 7.451731 TTCTATAGGGTTCAATCCTGTGAAT 57.548 36.000 0.00 0.00 39.61 2.57
412 413 6.884472 TTCTATAGGGTTCAATCCTGTGAA 57.116 37.500 0.00 0.00 35.92 3.18
413 414 7.451731 AATTCTATAGGGTTCAATCCTGTGA 57.548 36.000 0.00 0.00 35.92 3.58
414 415 8.525290 AAAATTCTATAGGGTTCAATCCTGTG 57.475 34.615 0.00 0.00 35.92 3.66
465 466 9.396022 GGAGTGGATACTAGATTTTCAATGAAA 57.604 33.333 4.03 4.03 37.25 2.69
466 467 8.548025 TGGAGTGGATACTAGATTTTCAATGAA 58.452 33.333 0.00 0.00 37.25 2.57
467 468 8.089625 TGGAGTGGATACTAGATTTTCAATGA 57.910 34.615 0.00 0.00 37.25 2.57
468 469 8.616076 GTTGGAGTGGATACTAGATTTTCAATG 58.384 37.037 0.00 0.00 37.25 2.82
469 470 7.775561 GGTTGGAGTGGATACTAGATTTTCAAT 59.224 37.037 0.00 0.00 37.25 2.57
470 471 7.037586 AGGTTGGAGTGGATACTAGATTTTCAA 60.038 37.037 0.00 0.00 37.25 2.69
471 472 6.443849 AGGTTGGAGTGGATACTAGATTTTCA 59.556 38.462 0.00 0.00 37.25 2.69
472 473 6.890293 AGGTTGGAGTGGATACTAGATTTTC 58.110 40.000 0.00 0.00 37.25 2.29
473 474 6.674419 AGAGGTTGGAGTGGATACTAGATTTT 59.326 38.462 0.00 0.00 37.25 1.82
474 475 6.206042 AGAGGTTGGAGTGGATACTAGATTT 58.794 40.000 0.00 0.00 37.25 2.17
475 476 5.782925 AGAGGTTGGAGTGGATACTAGATT 58.217 41.667 0.00 0.00 37.25 2.40
476 477 5.411103 AGAGGTTGGAGTGGATACTAGAT 57.589 43.478 0.00 0.00 37.25 1.98
477 478 4.883021 AGAGGTTGGAGTGGATACTAGA 57.117 45.455 0.00 0.00 37.25 2.43
478 479 5.941555 AAAGAGGTTGGAGTGGATACTAG 57.058 43.478 0.00 0.00 37.25 2.57
479 480 6.697641 AAAAAGAGGTTGGAGTGGATACTA 57.302 37.500 0.00 0.00 37.25 1.82
480 481 5.584551 AAAAAGAGGTTGGAGTGGATACT 57.415 39.130 0.00 0.00 40.66 2.12
499 500 6.096282 ACAGGAGAAACGAAGGAATTGAAAAA 59.904 34.615 0.00 0.00 0.00 1.94
500 501 5.592688 ACAGGAGAAACGAAGGAATTGAAAA 59.407 36.000 0.00 0.00 0.00 2.29
501 502 5.130350 ACAGGAGAAACGAAGGAATTGAAA 58.870 37.500 0.00 0.00 0.00 2.69
502 503 4.714632 ACAGGAGAAACGAAGGAATTGAA 58.285 39.130 0.00 0.00 0.00 2.69
503 504 4.351874 ACAGGAGAAACGAAGGAATTGA 57.648 40.909 0.00 0.00 0.00 2.57
504 505 4.093556 GCTACAGGAGAAACGAAGGAATTG 59.906 45.833 0.00 0.00 0.00 2.32
505 506 4.254492 GCTACAGGAGAAACGAAGGAATT 58.746 43.478 0.00 0.00 0.00 2.17
506 507 3.260884 TGCTACAGGAGAAACGAAGGAAT 59.739 43.478 0.00 0.00 0.00 3.01
507 508 2.631062 TGCTACAGGAGAAACGAAGGAA 59.369 45.455 0.00 0.00 0.00 3.36
508 509 2.244695 TGCTACAGGAGAAACGAAGGA 58.755 47.619 0.00 0.00 0.00 3.36
509 510 2.743636 TGCTACAGGAGAAACGAAGG 57.256 50.000 0.00 0.00 0.00 3.46
510 511 3.849911 TGATGCTACAGGAGAAACGAAG 58.150 45.455 0.00 0.00 0.00 3.79
511 512 3.953712 TGATGCTACAGGAGAAACGAA 57.046 42.857 0.00 0.00 0.00 3.85
512 513 3.953712 TTGATGCTACAGGAGAAACGA 57.046 42.857 0.00 0.00 0.00 3.85
513 514 3.745975 TGTTTGATGCTACAGGAGAAACG 59.254 43.478 0.00 0.00 29.91 3.60
514 515 4.757149 AGTGTTTGATGCTACAGGAGAAAC 59.243 41.667 0.00 0.00 0.00 2.78
515 516 4.973168 AGTGTTTGATGCTACAGGAGAAA 58.027 39.130 0.00 0.00 0.00 2.52
516 517 4.284490 AGAGTGTTTGATGCTACAGGAGAA 59.716 41.667 0.00 0.00 0.00 2.87
517 518 3.834813 AGAGTGTTTGATGCTACAGGAGA 59.165 43.478 0.00 0.00 0.00 3.71
518 519 4.199432 AGAGTGTTTGATGCTACAGGAG 57.801 45.455 0.00 0.00 0.00 3.69
519 520 5.664457 CATAGAGTGTTTGATGCTACAGGA 58.336 41.667 0.00 0.00 0.00 3.86
520 521 4.272018 GCATAGAGTGTTTGATGCTACAGG 59.728 45.833 0.00 0.00 41.19 4.00
521 522 5.401033 GCATAGAGTGTTTGATGCTACAG 57.599 43.478 0.00 0.00 41.19 2.74
526 527 6.857777 AGATTAGCATAGAGTGTTTGATGC 57.142 37.500 0.00 0.00 44.05 3.91
540 541 8.884323 TCCACTTGAATCCTATAAGATTAGCAT 58.116 33.333 0.00 0.00 36.60 3.79
541 542 8.150945 GTCCACTTGAATCCTATAAGATTAGCA 58.849 37.037 0.00 0.00 36.60 3.49
542 543 8.150945 TGTCCACTTGAATCCTATAAGATTAGC 58.849 37.037 0.00 0.00 36.60 3.09
545 546 7.446625 GCATGTCCACTTGAATCCTATAAGATT 59.553 37.037 0.00 0.00 39.19 2.40
546 547 6.939163 GCATGTCCACTTGAATCCTATAAGAT 59.061 38.462 0.00 0.00 0.00 2.40
547 548 6.291377 GCATGTCCACTTGAATCCTATAAGA 58.709 40.000 0.00 0.00 0.00 2.10
548 549 5.471456 GGCATGTCCACTTGAATCCTATAAG 59.529 44.000 0.00 0.00 34.01 1.73
549 550 5.104151 TGGCATGTCCACTTGAATCCTATAA 60.104 40.000 4.93 0.00 40.72 0.98
550 551 4.411869 TGGCATGTCCACTTGAATCCTATA 59.588 41.667 4.93 0.00 40.72 1.31
551 552 3.202818 TGGCATGTCCACTTGAATCCTAT 59.797 43.478 4.93 0.00 40.72 2.57
552 553 2.575735 TGGCATGTCCACTTGAATCCTA 59.424 45.455 4.93 0.00 40.72 2.94
553 554 1.355381 TGGCATGTCCACTTGAATCCT 59.645 47.619 4.93 0.00 40.72 3.24
554 555 1.838112 TGGCATGTCCACTTGAATCC 58.162 50.000 4.93 0.00 40.72 3.01
563 564 1.355381 AGGATTTGAGTGGCATGTCCA 59.645 47.619 4.93 4.93 44.18 4.02
564 565 1.747355 CAGGATTTGAGTGGCATGTCC 59.253 52.381 0.00 0.00 33.11 4.02
565 566 2.440409 ACAGGATTTGAGTGGCATGTC 58.560 47.619 0.00 0.00 0.00 3.06
566 567 2.592102 ACAGGATTTGAGTGGCATGT 57.408 45.000 0.00 0.00 0.00 3.21
567 568 5.450965 GGAAATACAGGATTTGAGTGGCATG 60.451 44.000 0.00 0.00 37.90 4.06
568 569 4.646492 GGAAATACAGGATTTGAGTGGCAT 59.354 41.667 0.00 0.00 37.90 4.40
569 570 4.016444 GGAAATACAGGATTTGAGTGGCA 58.984 43.478 0.00 0.00 37.90 4.92
570 571 4.273318 AGGAAATACAGGATTTGAGTGGC 58.727 43.478 0.00 0.00 37.90 5.01
571 572 5.749462 AGAGGAAATACAGGATTTGAGTGG 58.251 41.667 0.00 0.00 37.90 4.00
572 573 8.970859 AATAGAGGAAATACAGGATTTGAGTG 57.029 34.615 0.00 0.00 37.90 3.51
573 574 9.620259 GAAATAGAGGAAATACAGGATTTGAGT 57.380 33.333 0.00 0.00 37.90 3.41
574 575 9.061435 GGAAATAGAGGAAATACAGGATTTGAG 57.939 37.037 0.00 0.00 37.90 3.02
575 576 8.556589 TGGAAATAGAGGAAATACAGGATTTGA 58.443 33.333 0.00 0.00 37.90 2.69
576 577 8.752005 TGGAAATAGAGGAAATACAGGATTTG 57.248 34.615 0.00 0.00 37.90 2.32
577 578 9.359653 CATGGAAATAGAGGAAATACAGGATTT 57.640 33.333 0.00 0.00 40.62 2.17
578 579 8.506083 ACATGGAAATAGAGGAAATACAGGATT 58.494 33.333 0.00 0.00 0.00 3.01
579 580 8.050316 ACATGGAAATAGAGGAAATACAGGAT 57.950 34.615 0.00 0.00 0.00 3.24
580 581 7.451731 ACATGGAAATAGAGGAAATACAGGA 57.548 36.000 0.00 0.00 0.00 3.86
581 582 8.525290 AAACATGGAAATAGAGGAAATACAGG 57.475 34.615 0.00 0.00 0.00 4.00
582 583 9.793252 CAAAACATGGAAATAGAGGAAATACAG 57.207 33.333 0.00 0.00 0.00 2.74
583 584 9.527157 TCAAAACATGGAAATAGAGGAAATACA 57.473 29.630 0.00 0.00 0.00 2.29
588 589 9.927668 GATTTTCAAAACATGGAAATAGAGGAA 57.072 29.630 0.00 0.00 45.46 3.36
589 590 8.531146 GGATTTTCAAAACATGGAAATAGAGGA 58.469 33.333 0.00 0.00 45.46 3.71
590 591 8.534496 AGGATTTTCAAAACATGGAAATAGAGG 58.466 33.333 0.00 0.00 45.46 3.69
591 592 9.362539 CAGGATTTTCAAAACATGGAAATAGAG 57.637 33.333 0.00 0.00 45.46 2.43
592 593 7.818930 GCAGGATTTTCAAAACATGGAAATAGA 59.181 33.333 0.00 0.00 45.46 1.98
593 594 7.603404 TGCAGGATTTTCAAAACATGGAAATAG 59.397 33.333 0.00 0.00 45.46 1.73
594 595 7.448420 TGCAGGATTTTCAAAACATGGAAATA 58.552 30.769 0.00 0.00 45.46 1.40
596 597 5.678583 TGCAGGATTTTCAAAACATGGAAA 58.321 33.333 0.00 0.00 40.79 3.13
597 598 5.287674 TGCAGGATTTTCAAAACATGGAA 57.712 34.783 0.00 0.00 0.00 3.53
598 599 4.952071 TGCAGGATTTTCAAAACATGGA 57.048 36.364 0.00 0.00 0.00 3.41
599 600 6.205076 TGATTTGCAGGATTTTCAAAACATGG 59.795 34.615 0.00 0.00 34.00 3.66
600 601 7.192148 TGATTTGCAGGATTTTCAAAACATG 57.808 32.000 0.00 0.00 34.00 3.21
601 602 7.804843 TTGATTTGCAGGATTTTCAAAACAT 57.195 28.000 0.00 0.00 34.24 2.71
602 603 7.551974 TCTTTGATTTGCAGGATTTTCAAAACA 59.448 29.630 0.00 0.00 33.97 2.83
603 604 7.918643 TCTTTGATTTGCAGGATTTTCAAAAC 58.081 30.769 0.00 0.00 33.97 2.43
604 605 7.227116 CCTCTTTGATTTGCAGGATTTTCAAAA 59.773 33.333 0.00 0.00 33.97 2.44
605 606 6.707161 CCTCTTTGATTTGCAGGATTTTCAAA 59.293 34.615 0.00 0.00 34.68 2.69
606 607 6.225318 CCTCTTTGATTTGCAGGATTTTCAA 58.775 36.000 0.00 0.00 0.00 2.69
607 608 5.279607 CCCTCTTTGATTTGCAGGATTTTCA 60.280 40.000 0.00 0.00 0.00 2.69
608 609 5.173664 CCCTCTTTGATTTGCAGGATTTTC 58.826 41.667 0.00 0.00 0.00 2.29
609 610 4.564199 GCCCTCTTTGATTTGCAGGATTTT 60.564 41.667 0.00 0.00 0.00 1.82
610 611 3.055602 GCCCTCTTTGATTTGCAGGATTT 60.056 43.478 0.00 0.00 0.00 2.17
611 612 2.498885 GCCCTCTTTGATTTGCAGGATT 59.501 45.455 0.00 0.00 0.00 3.01
612 613 2.105766 GCCCTCTTTGATTTGCAGGAT 58.894 47.619 0.00 0.00 0.00 3.24
613 614 1.549203 GCCCTCTTTGATTTGCAGGA 58.451 50.000 0.00 0.00 0.00 3.86
614 615 0.533951 GGCCCTCTTTGATTTGCAGG 59.466 55.000 0.00 0.00 0.00 4.85
615 616 1.553706 AGGCCCTCTTTGATTTGCAG 58.446 50.000 0.00 0.00 0.00 4.41
616 617 2.014010 AAGGCCCTCTTTGATTTGCA 57.986 45.000 0.00 0.00 29.99 4.08
617 618 4.403752 AGATTAAGGCCCTCTTTGATTTGC 59.596 41.667 0.00 0.00 36.93 3.68
618 619 5.420104 ACAGATTAAGGCCCTCTTTGATTTG 59.580 40.000 0.00 0.00 36.93 2.32
619 620 5.583932 ACAGATTAAGGCCCTCTTTGATTT 58.416 37.500 0.00 0.00 36.93 2.17
620 621 5.198602 ACAGATTAAGGCCCTCTTTGATT 57.801 39.130 0.00 0.00 36.93 2.57
621 622 4.870021 ACAGATTAAGGCCCTCTTTGAT 57.130 40.909 0.00 0.00 36.93 2.57
622 623 5.772393 TTACAGATTAAGGCCCTCTTTGA 57.228 39.130 0.00 0.00 36.93 2.69
623 624 6.834168 TTTTACAGATTAAGGCCCTCTTTG 57.166 37.500 0.00 0.00 36.93 2.77
624 625 9.541884 TTTATTTTACAGATTAAGGCCCTCTTT 57.458 29.630 0.00 0.00 36.93 2.52
625 626 9.541884 TTTTATTTTACAGATTAAGGCCCTCTT 57.458 29.630 0.00 0.00 39.40 2.85
626 627 9.715119 ATTTTATTTTACAGATTAAGGCCCTCT 57.285 29.630 0.00 0.00 0.00 3.69
629 630 9.244799 CGAATTTTATTTTACAGATTAAGGCCC 57.755 33.333 0.00 0.00 0.00 5.80
638 639 9.567848 GAGGCAAATCGAATTTTATTTTACAGA 57.432 29.630 0.00 0.00 0.00 3.41
639 640 8.807581 GGAGGCAAATCGAATTTTATTTTACAG 58.192 33.333 0.00 0.00 0.00 2.74
671 672 2.945510 TACGGTTCGTAGCCTCACA 58.054 52.632 0.00 0.00 41.54 3.58
759 761 2.680370 GCGGGATCCCAGGAAGGTT 61.680 63.158 30.42 0.00 35.37 3.50
763 765 3.407967 GTGGCGGGATCCCAGGAA 61.408 66.667 30.42 9.91 35.37 3.36
823 827 1.207089 TCTGTGCTTTGGGTATCTCCG 59.793 52.381 0.00 0.00 37.00 4.63
870 881 1.078528 ACATGTCGGTGGGGAGAGA 59.921 57.895 0.00 0.00 0.00 3.10
872 883 3.387716 CACATGTCGGTGGGGAGA 58.612 61.111 0.00 0.00 35.13 3.71
1317 1386 2.571757 CAGACCCGCTCGTGCTTA 59.428 61.111 7.97 0.00 36.97 3.09
1470 1539 2.203056 CGGATCCGCATGCCAAGA 60.203 61.111 23.37 7.17 0.00 3.02
1572 1641 5.008712 GCCATATGGAAAAGTTACTAGGCAC 59.991 44.000 26.47 0.00 37.23 5.01
1611 1683 7.702348 GGATATACCAAAGCTCACACAAAAATC 59.298 37.037 0.00 0.00 38.79 2.17
1631 1703 9.716531 CTCATTTCACAGCTAAATCAGGATATA 57.283 33.333 0.00 0.00 0.00 0.86
1632 1704 7.664731 CCTCATTTCACAGCTAAATCAGGATAT 59.335 37.037 4.76 0.00 36.88 1.63
1690 1762 2.134789 AGAAATTCATCCGGCTGCTT 57.865 45.000 0.00 0.00 0.00 3.91
1787 1859 9.288576 CATATGCTCCCTGATTTCACTTAATTA 57.711 33.333 0.00 0.00 0.00 1.40
1843 1915 7.174946 TCTCAAGACTTCCAATGTATTGTTTCC 59.825 37.037 4.12 0.00 37.72 3.13
2129 2226 9.790389 CTAGTAGAGACTAATCGAACAAACATT 57.210 33.333 0.00 0.00 37.72 2.71
2134 2231 8.734218 ATGACTAGTAGAGACTAATCGAACAA 57.266 34.615 3.59 0.00 37.24 2.83
2139 2236 8.836268 AACCTATGACTAGTAGAGACTAATCG 57.164 38.462 3.59 0.00 37.24 3.34
2193 2290 3.179830 CAGTCCTAGTCACGGAATTTCG 58.820 50.000 4.10 4.10 31.13 3.46
2279 2377 3.803082 CATTGGGGTCGCAGCACG 61.803 66.667 0.00 0.00 45.62 5.34
2453 2551 3.066621 TGCAGGAAGACAACACAATTGTC 59.933 43.478 8.48 11.04 46.71 3.18
2565 2663 1.534595 GAGTTGCAGGTGCTCTTTCAG 59.465 52.381 3.18 0.00 42.66 3.02
2582 2680 2.088104 TGGAGAGATTATGGCGGAGT 57.912 50.000 0.00 0.00 0.00 3.85
2714 2812 5.602561 ACTCACAGCTATATCACCACCATTA 59.397 40.000 0.00 0.00 0.00 1.90
2814 2928 6.780457 ACCTGCAGCAGAAAATAAATATGT 57.220 33.333 24.90 5.36 32.44 2.29
2815 2929 8.790718 AGATACCTGCAGCAGAAAATAAATATG 58.209 33.333 24.90 4.69 32.44 1.78
2816 2930 8.930846 AGATACCTGCAGCAGAAAATAAATAT 57.069 30.769 24.90 7.79 32.44 1.28
2817 2931 8.752005 AAGATACCTGCAGCAGAAAATAAATA 57.248 30.769 24.90 3.49 32.44 1.40
2818 2932 7.340232 TGAAGATACCTGCAGCAGAAAATAAAT 59.660 33.333 24.90 5.95 32.44 1.40
2819 2933 6.658816 TGAAGATACCTGCAGCAGAAAATAAA 59.341 34.615 24.90 0.11 32.44 1.40
2820 2934 6.179756 TGAAGATACCTGCAGCAGAAAATAA 58.820 36.000 24.90 2.59 32.44 1.40
2821 2935 5.744171 TGAAGATACCTGCAGCAGAAAATA 58.256 37.500 24.90 10.57 32.44 1.40
2880 2994 3.436704 TGTGAGAAATTTTAGCAGCTCCG 59.563 43.478 0.00 0.00 0.00 4.63
2958 3072 7.256190 GGGGTGCTTACATATGTAGAATCACTA 60.256 40.741 22.95 8.27 0.00 2.74
2976 3090 1.683011 CCAGAATCATTCGGGGTGCTT 60.683 52.381 8.64 0.00 40.74 3.91
2985 3099 3.879892 GCACTAGGTTCCCAGAATCATTC 59.120 47.826 0.00 0.00 0.00 2.67
3018 3132 6.183360 CCGAGCAATCTCTCAAAAACATATGT 60.183 38.462 1.41 1.41 37.19 2.29
3028 3142 3.006859 TCACTTTCCGAGCAATCTCTCAA 59.993 43.478 0.00 0.00 37.19 3.02
3038 3152 1.270358 ACTCCAAGTCACTTTCCGAGC 60.270 52.381 6.11 0.00 0.00 5.03
3106 3220 5.468072 GGTATGAAGACATGTAAGATGCCAG 59.532 44.000 0.00 0.00 37.87 4.85
3117 3231 5.970592 TCTCTCTTGTGGTATGAAGACATG 58.029 41.667 0.00 0.00 37.87 3.21
3186 3300 5.920840 GCAGGAAGCTTTAAAGTAAGGTTTG 59.079 40.000 16.38 8.06 43.64 2.93
3193 3307 5.592688 ACAACTTGCAGGAAGCTTTAAAGTA 59.407 36.000 16.38 0.00 45.94 2.24
3194 3308 4.402474 ACAACTTGCAGGAAGCTTTAAAGT 59.598 37.500 16.38 4.07 45.94 2.66
3209 3323 7.873739 ATAAAGATTTAGCAACACAACTTGC 57.126 32.000 0.00 0.00 45.93 4.01
3232 3346 7.490840 TGCACTGCAAGCATAAACAATATAAT 58.509 30.769 9.24 0.00 37.60 1.28
3233 3347 6.861144 TGCACTGCAAGCATAAACAATATAA 58.139 32.000 9.24 0.00 37.60 0.98
3234 3348 6.448207 TGCACTGCAAGCATAAACAATATA 57.552 33.333 9.24 0.00 37.60 0.86
3235 3349 5.327616 TGCACTGCAAGCATAAACAATAT 57.672 34.783 9.24 0.00 37.60 1.28
3236 3350 4.780275 TGCACTGCAAGCATAAACAATA 57.220 36.364 9.24 0.00 37.60 1.90
3237 3351 3.663995 TGCACTGCAAGCATAAACAAT 57.336 38.095 9.24 0.00 37.60 2.71
3255 3369 7.911362 AACAAAACAAAATAATTGTGCATGC 57.089 28.000 11.82 11.82 36.23 4.06
3262 3376 9.036671 ACGGTAGGAAACAAAACAAAATAATTG 57.963 29.630 0.00 0.00 0.00 2.32
3266 3380 5.978322 GCACGGTAGGAAACAAAACAAAATA 59.022 36.000 0.00 0.00 0.00 1.40
3267 3381 4.806775 GCACGGTAGGAAACAAAACAAAAT 59.193 37.500 0.00 0.00 0.00 1.82
3272 3386 2.614983 TGAGCACGGTAGGAAACAAAAC 59.385 45.455 0.00 0.00 0.00 2.43
3277 3391 0.727398 GCATGAGCACGGTAGGAAAC 59.273 55.000 0.00 0.00 41.58 2.78
3278 3392 3.153024 GCATGAGCACGGTAGGAAA 57.847 52.632 0.00 0.00 41.58 3.13
3358 3472 2.793232 GTCGACAATCCAACCGTATAGC 59.207 50.000 11.55 0.00 0.00 2.97
3446 3560 1.468520 CGTTTTCGCTGGGATCACAAT 59.531 47.619 0.00 0.00 36.22 2.71
3467 3581 6.369065 GGGAAACTCATGTAACTGTTGACTAG 59.631 42.308 2.69 0.00 0.00 2.57
3493 3607 0.313672 TTGCGCCAAACTCCATTCAC 59.686 50.000 4.18 0.00 0.00 3.18
3559 3673 4.605640 TGTGGTGTACAAACCCTACTAC 57.394 45.455 0.00 0.00 39.70 2.73
3581 3695 2.281484 GGCACCAGTCTTCGCCAA 60.281 61.111 0.00 0.00 44.25 4.52
3599 3713 2.359900 AGGATCAACTTTGCCGATGTC 58.640 47.619 0.00 0.00 0.00 3.06
3600 3714 2.489329 CAAGGATCAACTTTGCCGATGT 59.511 45.455 0.00 0.00 0.00 3.06
3685 3806 1.901833 ACATTGCCCCCAAAGATCAAC 59.098 47.619 0.00 0.00 34.05 3.18
3715 3836 0.026803 CGCGTTAGCCAGAATCTTGC 59.973 55.000 0.00 0.00 41.18 4.01
3724 3845 2.749865 GCATGCTTCGCGTTAGCCA 61.750 57.895 25.15 16.78 41.18 4.75
3784 3905 1.002134 AACCGAGCCCAACATCCTG 60.002 57.895 0.00 0.00 0.00 3.86
3894 4039 5.129634 TCCAGTAGCATTGACAAAACTTCA 58.870 37.500 0.00 0.00 0.00 3.02
3895 4040 5.689383 TCCAGTAGCATTGACAAAACTTC 57.311 39.130 0.00 0.00 0.00 3.01
3931 4090 3.562557 TCCACTTTACGCCAAGAAAAGTC 59.437 43.478 1.32 0.00 40.52 3.01
4108 4269 4.741837 GCCTTTGGAATCTCTGATCGATGA 60.742 45.833 0.54 0.00 0.00 2.92
4255 4416 9.958180 TTGTGATTTTTAATGACCTCTCTGATA 57.042 29.630 0.00 0.00 0.00 2.15
4298 4459 4.489810 TCTCTTGCTGATTTCGAACTCTC 58.510 43.478 15.49 8.64 0.00 3.20
4325 4486 1.972075 GGGGAGCTACATCTTAGGGTC 59.028 57.143 0.00 0.00 0.00 4.46
4336 4497 0.696501 TCCAAAACCTGGGGAGCTAC 59.303 55.000 0.00 0.00 46.44 3.58
4341 4502 2.492567 CCTGAAATCCAAAACCTGGGGA 60.493 50.000 0.00 0.00 46.44 4.81
4377 4538 1.117150 GGTAGAACGGATGGCCAGTA 58.883 55.000 13.05 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.