Multiple sequence alignment - TraesCS7B01G211700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G211700 chr7B 100.000 5218 0 0 1 5218 387641336 387646553 0.000000e+00 9636
1 TraesCS7B01G211700 chr7B 96.907 291 9 0 256 546 652145432 652145142 6.070000e-134 488
2 TraesCS7B01G211700 chr7B 77.872 235 32 13 620 847 395749266 395749045 1.530000e-25 128
3 TraesCS7B01G211700 chr7A 94.324 4369 161 25 898 5217 442948676 442953006 0.000000e+00 6613
4 TraesCS7B01G211700 chr7A 90.316 475 28 6 989 1457 442947699 442948161 1.610000e-169 606
5 TraesCS7B01G211700 chr7A 93.485 307 17 3 242 545 632643368 632643062 2.220000e-123 453
6 TraesCS7B01G211700 chr7A 91.159 328 22 6 235 555 731972111 731972438 6.200000e-119 438
7 TraesCS7B01G211700 chr7A 78.261 184 21 14 598 772 728070770 728070597 3.320000e-17 100
8 TraesCS7B01G211700 chr7D 96.849 2761 79 5 898 3651 390904761 390907520 0.000000e+00 4610
9 TraesCS7B01G211700 chr7D 92.323 1537 77 15 3703 5217 390907526 390909043 0.000000e+00 2146
10 TraesCS7B01G211700 chr7D 76.774 310 21 22 589 881 353943177 353942902 5.490000e-25 126
11 TraesCS7B01G211700 chr3B 96.207 290 11 0 256 545 606376064 606376353 4.730000e-130 475
12 TraesCS7B01G211700 chr1B 96.207 290 11 0 256 545 645506009 645506298 4.730000e-130 475
13 TraesCS7B01G211700 chr5B 95.578 294 11 2 256 549 556290858 556291149 2.200000e-128 470
14 TraesCS7B01G211700 chr4B 95.238 294 14 0 256 549 40215518 40215225 2.850000e-127 466
15 TraesCS7B01G211700 chr4A 94.898 294 15 0 256 549 703252801 703253094 1.320000e-125 460
16 TraesCS7B01G211700 chr2B 93.312 314 17 4 256 569 58998372 58998063 1.320000e-125 460
17 TraesCS7B01G211700 chr2B 79.186 221 30 10 633 847 100378378 100378168 7.050000e-29 139
18 TraesCS7B01G211700 chr5D 79.336 271 35 16 589 848 81320982 81321242 2.500000e-38 171
19 TraesCS7B01G211700 chr6B 78.307 189 19 18 596 772 275480741 275480563 9.240000e-18 102
20 TraesCS7B01G211700 chr6B 78.075 187 23 16 596 772 508193117 508193295 9.240000e-18 102
21 TraesCS7B01G211700 chr3A 78.307 189 17 22 597 772 54835698 54835521 3.320000e-17 100
22 TraesCS7B01G211700 chr2A 78.075 187 22 17 597 772 513829562 513829740 3.320000e-17 100
23 TraesCS7B01G211700 chr5A 77.838 185 23 17 597 772 550565308 550565133 1.200000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G211700 chr7B 387641336 387646553 5217 False 9636.0 9636 100.000 1 5218 1 chr7B.!!$F1 5217
1 TraesCS7B01G211700 chr7A 442947699 442953006 5307 False 3609.5 6613 92.320 898 5217 2 chr7A.!!$F2 4319
2 TraesCS7B01G211700 chr7D 390904761 390909043 4282 False 3378.0 4610 94.586 898 5217 2 chr7D.!!$F1 4319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.00 4.73 F
493 494 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.00 0.00 0.00 4.02 F
518 519 0.102300 TGCGTGTGTATATGAGCGCT 59.898 50.0 11.27 11.27 44.34 5.92 F
892 893 0.107165 GGAAATCCGGGAGACAAGGG 60.107 60.0 0.00 0.00 0.00 3.95 F
893 894 0.107165 GAAATCCGGGAGACAAGGGG 60.107 60.0 0.00 0.00 0.00 4.79 F
1043 1126 0.179089 CCAGACCAGAGCTCCAATCG 60.179 60.0 10.93 2.50 0.00 3.34 F
2812 2898 1.446907 CTGGTGTGCTTGATCCTGAC 58.553 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 1585 1.390123 CAACAGTACGACCTGCAATCG 59.610 52.381 16.32 16.32 45.17 3.34 R
1988 2072 1.480789 TACTCTGCATGCTTCCGGTA 58.519 50.000 20.33 11.45 0.00 4.02 R
2470 2554 2.360852 CCCACCAGGAGCAGCTTG 60.361 66.667 0.00 0.00 38.24 4.01 R
2812 2898 0.940126 GATCATGCTTGTAGTGGGCG 59.060 55.000 0.00 0.00 0.00 6.13 R
2843 2929 3.795101 GTGAATGCTTGCATGTAATCTGC 59.205 43.478 8.98 0.00 40.10 4.26 R
3054 3145 5.470368 ACATACATCGGGATACAATTCGAG 58.530 41.667 0.00 0.00 35.07 4.04 R
4643 4783 0.108585 ACACCACATTGGCGAAGACT 59.891 50.000 0.00 0.00 42.67 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.360482 GTGCGAACATTCTTTTGAAAGC 57.640 40.909 0.00 0.00 42.31 3.51
22 23 3.042189 TGCGAACATTCTTTTGAAAGCG 58.958 40.909 0.00 0.00 42.31 4.68
23 24 2.160104 GCGAACATTCTTTTGAAAGCGC 60.160 45.455 0.00 0.00 42.31 5.92
24 25 2.087451 CGAACATTCTTTTGAAAGCGCG 59.913 45.455 0.00 0.00 42.31 6.86
25 26 2.050477 ACATTCTTTTGAAAGCGCGG 57.950 45.000 8.83 0.00 42.31 6.46
26 27 1.606668 ACATTCTTTTGAAAGCGCGGA 59.393 42.857 8.83 0.00 42.31 5.54
27 28 1.978782 CATTCTTTTGAAAGCGCGGAC 59.021 47.619 8.83 0.00 42.31 4.79
28 29 1.018148 TTCTTTTGAAAGCGCGGACA 58.982 45.000 8.83 0.00 35.17 4.02
29 30 1.234821 TCTTTTGAAAGCGCGGACAT 58.765 45.000 8.83 0.00 35.99 3.06
30 31 1.606668 TCTTTTGAAAGCGCGGACATT 59.393 42.857 8.83 0.00 35.99 2.71
31 32 2.034053 TCTTTTGAAAGCGCGGACATTT 59.966 40.909 8.83 0.00 35.99 2.32
32 33 2.500509 TTTGAAAGCGCGGACATTTT 57.499 40.000 8.83 0.00 0.00 1.82
33 34 2.500509 TTGAAAGCGCGGACATTTTT 57.499 40.000 8.83 0.00 0.00 1.94
34 35 2.044888 TGAAAGCGCGGACATTTTTC 57.955 45.000 8.83 5.38 0.00 2.29
36 37 2.030363 TGAAAGCGCGGACATTTTTCAT 60.030 40.909 8.83 0.00 34.04 2.57
37 38 3.189495 TGAAAGCGCGGACATTTTTCATA 59.811 39.130 8.83 0.00 34.04 2.15
38 39 3.840890 AAGCGCGGACATTTTTCATAA 57.159 38.095 8.83 0.00 0.00 1.90
39 40 3.840890 AGCGCGGACATTTTTCATAAA 57.159 38.095 8.83 0.00 0.00 1.40
40 41 3.758300 AGCGCGGACATTTTTCATAAAG 58.242 40.909 8.83 0.00 0.00 1.85
41 42 2.851824 GCGCGGACATTTTTCATAAAGG 59.148 45.455 8.83 0.00 0.00 3.11
43 44 2.851824 GCGGACATTTTTCATAAAGGCG 59.148 45.455 0.00 0.00 0.00 5.52
44 45 3.426963 GCGGACATTTTTCATAAAGGCGA 60.427 43.478 0.00 0.00 0.00 5.54
46 47 4.557301 CGGACATTTTTCATAAAGGCGAAC 59.443 41.667 0.00 0.00 0.00 3.95
80 81 9.782028 CAAATGTGAACATTATCTTGAAAAACG 57.218 29.630 9.01 0.00 45.06 3.60
81 82 9.528018 AAATGTGAACATTATCTTGAAAAACGT 57.472 25.926 9.01 0.00 45.06 3.99
83 84 7.698628 TGTGAACATTATCTTGAAAAACGTGA 58.301 30.769 0.00 0.00 0.00 4.35
84 85 7.855409 TGTGAACATTATCTTGAAAAACGTGAG 59.145 33.333 0.00 0.00 0.00 3.51
102 103 6.189567 ACGTGAGTTGTTTCTGAAATTTACG 58.810 36.000 6.06 12.73 46.40 3.18
103 104 6.036300 ACGTGAGTTGTTTCTGAAATTTACGA 59.964 34.615 20.60 4.79 46.40 3.43
104 105 6.902948 CGTGAGTTGTTTCTGAAATTTACGAA 59.097 34.615 6.06 0.00 0.00 3.85
105 106 7.097570 CGTGAGTTGTTTCTGAAATTTACGAAC 60.098 37.037 6.06 7.71 0.00 3.95
106 107 7.694784 GTGAGTTGTTTCTGAAATTTACGAACA 59.305 33.333 6.06 0.00 0.00 3.18
107 108 8.402472 TGAGTTGTTTCTGAAATTTACGAACAT 58.598 29.630 6.06 0.00 0.00 2.71
108 109 9.233232 GAGTTGTTTCTGAAATTTACGAACATT 57.767 29.630 6.06 0.00 0.00 2.71
109 110 9.581099 AGTTGTTTCTGAAATTTACGAACATTT 57.419 25.926 6.06 0.00 0.00 2.32
133 134 4.831741 TGAAAACACGCACATTTTCAAC 57.168 36.364 13.61 0.00 46.53 3.18
134 135 4.489810 TGAAAACACGCACATTTTCAACT 58.510 34.783 13.61 0.00 46.53 3.16
135 136 4.560819 TGAAAACACGCACATTTTCAACTC 59.439 37.500 13.61 0.00 46.53 3.01
136 137 4.370364 AAACACGCACATTTTCAACTCT 57.630 36.364 0.00 0.00 0.00 3.24
137 138 5.493133 AAACACGCACATTTTCAACTCTA 57.507 34.783 0.00 0.00 0.00 2.43
138 139 4.468095 ACACGCACATTTTCAACTCTAC 57.532 40.909 0.00 0.00 0.00 2.59
139 140 3.059868 ACACGCACATTTTCAACTCTACG 60.060 43.478 0.00 0.00 0.00 3.51
140 141 3.183574 CACGCACATTTTCAACTCTACGA 59.816 43.478 0.00 0.00 0.00 3.43
141 142 3.805422 ACGCACATTTTCAACTCTACGAA 59.195 39.130 0.00 0.00 0.00 3.85
142 143 4.141680 CGCACATTTTCAACTCTACGAAC 58.858 43.478 0.00 0.00 0.00 3.95
144 145 5.614668 CGCACATTTTCAACTCTACGAACAT 60.615 40.000 0.00 0.00 0.00 2.71
146 147 6.636850 GCACATTTTCAACTCTACGAACATTT 59.363 34.615 0.00 0.00 0.00 2.32
147 148 7.167468 GCACATTTTCAACTCTACGAACATTTT 59.833 33.333 0.00 0.00 0.00 1.82
148 149 8.471457 CACATTTTCAACTCTACGAACATTTTG 58.529 33.333 0.00 0.00 0.00 2.44
151 152 9.796120 ATTTTCAACTCTACGAACATTTTGAAA 57.204 25.926 0.00 0.00 38.85 2.69
152 153 9.627395 TTTTCAACTCTACGAACATTTTGAAAA 57.373 25.926 12.81 12.81 43.71 2.29
153 154 8.609478 TTCAACTCTACGAACATTTTGAAAAC 57.391 30.769 0.00 0.00 30.60 2.43
154 155 6.902948 TCAACTCTACGAACATTTTGAAAACG 59.097 34.615 0.00 0.00 0.00 3.60
158 159 6.028368 TCTACGAACATTTTGAAAACGCAAA 58.972 32.000 0.00 0.00 36.08 3.68
160 161 5.916969 ACGAACATTTTGAAAACGCAAAAA 58.083 29.167 6.39 0.00 46.91 1.94
183 184 8.970859 AAAAATTGGGAACATTTATGACAACA 57.029 26.923 0.00 0.00 42.32 3.33
184 185 7.961325 AAATTGGGAACATTTATGACAACAC 57.039 32.000 0.00 0.00 42.32 3.32
185 186 4.757799 TGGGAACATTTATGACAACACG 57.242 40.909 0.00 0.00 33.40 4.49
186 187 4.390264 TGGGAACATTTATGACAACACGA 58.610 39.130 0.00 0.00 33.40 4.35
187 188 4.822350 TGGGAACATTTATGACAACACGAA 59.178 37.500 0.00 0.00 33.40 3.85
189 190 6.655425 TGGGAACATTTATGACAACACGAATA 59.345 34.615 0.00 0.00 33.40 1.75
191 192 8.188139 GGGAACATTTATGACAACACGAATATT 58.812 33.333 0.00 0.00 0.00 1.28
192 193 9.567848 GGAACATTTATGACAACACGAATATTT 57.432 29.630 0.00 0.00 0.00 1.40
199 200 9.952188 TTATGACAACACGAATATTTTGTTCAA 57.048 25.926 11.54 4.05 32.34 2.69
200 201 8.864069 ATGACAACACGAATATTTTGTTCAAA 57.136 26.923 11.54 0.00 32.34 2.69
201 202 8.864069 TGACAACACGAATATTTTGTTCAAAT 57.136 26.923 11.54 1.99 38.69 2.32
202 203 9.307121 TGACAACACGAATATTTTGTTCAAATT 57.693 25.926 11.54 0.00 36.43 1.82
204 205 9.913451 ACAACACGAATATTTTGTTCAAATTTG 57.087 25.926 12.15 12.15 36.43 2.32
207 208 9.307121 ACACGAATATTTTGTTCAAATTTGTGA 57.693 25.926 23.01 5.60 36.43 3.58
259 260 8.950208 TTTAAAATTTAAGAACACCAGGGTTG 57.050 30.769 0.00 0.00 0.00 3.77
260 261 6.800072 AAAATTTAAGAACACCAGGGTTGA 57.200 33.333 0.00 0.00 0.00 3.18
261 262 6.405278 AAATTTAAGAACACCAGGGTTGAG 57.595 37.500 0.00 0.00 0.00 3.02
262 263 4.781775 TTTAAGAACACCAGGGTTGAGA 57.218 40.909 0.00 0.00 0.00 3.27
264 265 2.867109 AGAACACCAGGGTTGAGATG 57.133 50.000 0.00 0.00 0.00 2.90
265 266 1.352352 AGAACACCAGGGTTGAGATGG 59.648 52.381 0.00 0.00 40.10 3.51
267 268 1.149101 ACACCAGGGTTGAGATGGTT 58.851 50.000 0.00 0.00 44.98 3.67
268 269 2.344592 ACACCAGGGTTGAGATGGTTA 58.655 47.619 0.00 0.00 44.98 2.85
269 270 2.305927 ACACCAGGGTTGAGATGGTTAG 59.694 50.000 0.00 0.00 44.98 2.34
270 271 1.916181 ACCAGGGTTGAGATGGTTAGG 59.084 52.381 0.00 0.00 44.98 2.69
271 272 1.916181 CCAGGGTTGAGATGGTTAGGT 59.084 52.381 0.00 0.00 0.00 3.08
272 273 2.356125 CCAGGGTTGAGATGGTTAGGTG 60.356 54.545 0.00 0.00 0.00 4.00
273 274 1.916181 AGGGTTGAGATGGTTAGGTGG 59.084 52.381 0.00 0.00 0.00 4.61
274 275 1.913419 GGGTTGAGATGGTTAGGTGGA 59.087 52.381 0.00 0.00 0.00 4.02
275 276 2.355818 GGGTTGAGATGGTTAGGTGGAC 60.356 54.545 0.00 0.00 0.00 4.02
276 277 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
277 278 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
278 279 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
279 280 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
280 281 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
281 282 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
282 283 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
283 284 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
284 285 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
285 286 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
286 287 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
288 289 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
296 297 3.444955 TGGTATCCCCAACCCATCA 57.555 52.632 0.00 0.00 41.50 3.07
297 298 1.221635 TGGTATCCCCAACCCATCAG 58.778 55.000 0.00 0.00 41.50 2.90
298 299 0.478507 GGTATCCCCAACCCATCAGG 59.521 60.000 0.00 0.00 43.78 3.86
314 315 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
316 317 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
318 319 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
319 320 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
320 321 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
323 324 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
324 325 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
326 327 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
327 328 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
328 329 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
329 330 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
330 331 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
333 334 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
334 335 5.008613 GGTGCTCGCATTATTTCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
335 336 6.294176 GGTGCTCGCATTATTTCTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
337 338 7.649306 GTGCTCGCATTATTTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
338 339 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
339 340 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
340 341 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
341 342 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
342 343 8.352201 CGCATTATTTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
348 349 6.942532 TCTGGATTTATTTCAGGATTTCCG 57.057 37.500 0.00 0.00 42.08 4.30
350 351 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
351 352 4.340950 GGATTTATTTCAGGATTTCCGGCA 59.659 41.667 0.00 0.00 42.08 5.69
352 353 5.163457 GGATTTATTTCAGGATTTCCGGCAA 60.163 40.000 0.00 0.00 42.08 4.52
355 356 0.817013 TTCAGGATTTCCGGCAATGC 59.183 50.000 10.26 10.26 42.08 3.56
356 357 1.064621 CAGGATTTCCGGCAATGCG 59.935 57.895 12.24 4.57 42.08 4.73
357 358 2.278792 GGATTTCCGGCAATGCGC 60.279 61.111 3.34 0.00 41.28 6.09
360 361 0.528249 GATTTCCGGCAATGCGCATT 60.528 50.000 29.36 29.36 45.17 3.56
361 362 0.528249 ATTTCCGGCAATGCGCATTC 60.528 50.000 31.88 23.96 45.17 2.67
362 363 1.871126 TTTCCGGCAATGCGCATTCA 61.871 50.000 31.88 11.35 45.17 2.57
364 365 2.486504 CGGCAATGCGCATTCAGT 59.513 55.556 31.88 9.84 45.17 3.41
365 366 1.870458 CGGCAATGCGCATTCAGTG 60.870 57.895 31.88 22.40 45.17 3.66
366 367 1.517694 GGCAATGCGCATTCAGTGG 60.518 57.895 31.88 20.95 45.17 4.00
368 369 1.936436 GCAATGCGCATTCAGTGGGA 61.936 55.000 31.88 0.00 43.02 4.37
369 370 0.099968 CAATGCGCATTCAGTGGGAG 59.900 55.000 31.88 14.87 43.02 4.30
370 371 1.033746 AATGCGCATTCAGTGGGAGG 61.034 55.000 29.36 0.00 43.02 4.30
371 372 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
372 373 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
373 374 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
375 376 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
376 377 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
377 378 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
378 379 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
399 400 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
400 401 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
401 402 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
402 403 3.392595 GACGACGAGGTGCCTACGG 62.393 68.421 0.00 1.18 0.00 4.02
412 413 2.793946 GCCTACGGCGACTTCGTA 59.206 61.111 16.62 0.00 39.62 3.43
413 414 1.137404 GCCTACGGCGACTTCGTAA 59.863 57.895 16.62 0.00 41.62 3.18
414 415 0.456653 GCCTACGGCGACTTCGTAAA 60.457 55.000 16.62 0.00 41.62 2.01
416 417 2.533266 CCTACGGCGACTTCGTAAATT 58.467 47.619 16.62 0.00 41.62 1.82
417 418 2.925563 CCTACGGCGACTTCGTAAATTT 59.074 45.455 16.62 0.00 41.62 1.82
418 419 3.000376 CCTACGGCGACTTCGTAAATTTC 60.000 47.826 16.62 0.00 41.62 2.17
420 421 2.801679 ACGGCGACTTCGTAAATTTCAA 59.198 40.909 16.62 0.00 42.22 2.69
422 423 3.122278 CGGCGACTTCGTAAATTTCAAGA 59.878 43.478 0.00 0.00 42.22 3.02
424 425 5.022021 GGCGACTTCGTAAATTTCAAGATG 58.978 41.667 0.00 0.00 42.22 2.90
430 431 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
431 432 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
434 435 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
435 436 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
436 437 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
438 439 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
439 440 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
441 442 2.105477 AGATGATATGCCGGCTCAGTTT 59.895 45.455 29.70 8.26 0.00 2.66
442 443 2.418368 TGATATGCCGGCTCAGTTTT 57.582 45.000 29.70 5.10 0.00 2.43
443 444 2.722094 TGATATGCCGGCTCAGTTTTT 58.278 42.857 29.70 3.35 0.00 1.94
444 445 2.682856 TGATATGCCGGCTCAGTTTTTC 59.317 45.455 29.70 12.91 0.00 2.29
445 446 1.083489 TATGCCGGCTCAGTTTTTCG 58.917 50.000 29.70 0.00 0.00 3.46
446 447 0.605319 ATGCCGGCTCAGTTTTTCGA 60.605 50.000 29.70 1.81 0.00 3.71
447 448 0.816018 TGCCGGCTCAGTTTTTCGAA 60.816 50.000 29.70 0.00 0.00 3.71
448 449 0.110192 GCCGGCTCAGTTTTTCGAAG 60.110 55.000 22.15 0.00 0.00 3.79
449 450 0.517316 CCGGCTCAGTTTTTCGAAGG 59.483 55.000 0.00 0.00 0.00 3.46
450 451 1.226746 CGGCTCAGTTTTTCGAAGGT 58.773 50.000 0.00 0.00 0.00 3.50
451 452 1.069906 CGGCTCAGTTTTTCGAAGGTG 60.070 52.381 0.00 0.00 0.00 4.00
454 455 2.349912 GCTCAGTTTTTCGAAGGTGCTC 60.350 50.000 0.00 0.00 0.00 4.26
456 457 3.476552 TCAGTTTTTCGAAGGTGCTCAT 58.523 40.909 0.00 0.00 0.00 2.90
458 459 4.690748 TCAGTTTTTCGAAGGTGCTCATAG 59.309 41.667 0.00 0.00 0.00 2.23
459 460 4.003648 AGTTTTTCGAAGGTGCTCATAGG 58.996 43.478 0.00 0.00 0.00 2.57
460 461 2.691409 TTTCGAAGGTGCTCATAGGG 57.309 50.000 0.00 0.00 0.00 3.53
461 462 0.830648 TTCGAAGGTGCTCATAGGGG 59.169 55.000 0.00 0.00 0.00 4.79
462 463 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
464 465 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
465 466 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
466 467 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
470 471 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
471 472 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
472 473 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
473 474 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
474 475 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
475 476 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
476 477 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
478 479 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
479 480 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
482 483 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
483 484 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
486 487 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
487 488 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
488 489 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
489 490 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
490 491 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
491 492 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
492 493 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
493 494 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
494 495 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
496 497 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
498 499 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
500 501 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
501 502 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
502 503 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
504 505 0.821517 TAGGGGTGAGTGTATGCGTG 59.178 55.000 0.00 0.00 0.00 5.34
507 508 0.320421 GGGTGAGTGTATGCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
509 510 2.418197 GGGTGAGTGTATGCGTGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
511 512 4.500887 GGGTGAGTGTATGCGTGTGTATAT 60.501 45.833 0.00 0.00 0.00 0.86
512 513 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
513 514 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
514 515 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
515 516 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
516 517 3.119628 GTGTATGCGTGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
517 518 1.139989 ATGCGTGTGTATATGAGCGC 58.860 50.000 0.00 0.00 44.29 5.92
518 519 0.102300 TGCGTGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 44.34 5.92
519 520 1.209128 GCGTGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 41.37 4.68
520 521 1.071239 GCGTGTGTATATGAGCGCTTG 60.071 52.381 13.26 0.00 41.37 4.01
522 523 2.034591 CGTGTGTATATGAGCGCTTGTG 60.035 50.000 13.26 0.00 0.00 3.33
524 525 3.000322 GTGTGTATATGAGCGCTTGTGTC 60.000 47.826 13.26 0.00 0.00 3.67
525 526 3.119137 TGTGTATATGAGCGCTTGTGTCT 60.119 43.478 13.26 0.00 0.00 3.41
527 528 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
530 531 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
531 532 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
532 533 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
534 535 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
535 536 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
536 537 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
537 538 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
541 542 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
619 620 8.546597 TGAAAAAGAAACAGAAAAAGGAAAGG 57.453 30.769 0.00 0.00 0.00 3.11
620 621 8.371699 TGAAAAAGAAACAGAAAAAGGAAAGGA 58.628 29.630 0.00 0.00 0.00 3.36
623 624 9.739276 AAAAGAAACAGAAAAAGGAAAGGAAAT 57.261 25.926 0.00 0.00 0.00 2.17
696 697 8.684386 AAAAAGAAACAGAAAGGAAAAACCAA 57.316 26.923 0.00 0.00 42.04 3.67
697 698 8.684386 AAAAGAAACAGAAAGGAAAAACCAAA 57.316 26.923 0.00 0.00 42.04 3.28
700 701 8.322906 AGAAACAGAAAGGAAAAACCAAAAAG 57.677 30.769 0.00 0.00 42.04 2.27
701 702 8.154203 AGAAACAGAAAGGAAAAACCAAAAAGA 58.846 29.630 0.00 0.00 42.04 2.52
702 703 8.684386 AAACAGAAAGGAAAAACCAAAAAGAA 57.316 26.923 0.00 0.00 42.04 2.52
704 705 8.684386 ACAGAAAGGAAAAACCAAAAAGAAAA 57.316 26.923 0.00 0.00 42.04 2.29
705 706 8.564574 ACAGAAAGGAAAAACCAAAAAGAAAAC 58.435 29.630 0.00 0.00 42.04 2.43
706 707 8.783093 CAGAAAGGAAAAACCAAAAAGAAAACT 58.217 29.630 0.00 0.00 42.04 2.66
709 710 9.787435 AAAGGAAAAACCAAAAAGAAAACTAGT 57.213 25.926 0.00 0.00 42.04 2.57
710 711 9.787435 AAGGAAAAACCAAAAAGAAAACTAGTT 57.213 25.926 1.12 1.12 42.04 2.24
711 712 9.787435 AGGAAAAACCAAAAAGAAAACTAGTTT 57.213 25.926 15.22 15.22 42.04 2.66
725 726 7.806149 AAAACTAGTTTCGAAAAACAACAGG 57.194 32.000 20.78 0.53 45.94 4.00
727 728 6.746745 ACTAGTTTCGAAAAACAACAGGAA 57.253 33.333 13.10 0.00 45.94 3.36
729 730 7.595604 ACTAGTTTCGAAAAACAACAGGAAAA 58.404 30.769 13.10 0.00 45.94 2.29
730 731 8.083462 ACTAGTTTCGAAAAACAACAGGAAAAA 58.917 29.630 13.10 0.00 45.94 1.94
771 772 2.347630 GGAAGGTTCCCAAAACCGG 58.652 57.895 0.00 0.00 44.82 5.28
781 782 1.699730 CCAAAACCGGGAGAAAACCT 58.300 50.000 6.32 0.00 0.00 3.50
782 783 1.611977 CCAAAACCGGGAGAAAACCTC 59.388 52.381 6.32 0.00 41.22 3.85
789 790 2.436115 GAGAAAACCTCCCGCCCG 60.436 66.667 0.00 0.00 35.87 6.13
790 791 4.717313 AGAAAACCTCCCGCCCGC 62.717 66.667 0.00 0.00 0.00 6.13
800 801 4.742201 CCGCCCGCGCTATGCTAT 62.742 66.667 5.56 0.00 43.27 2.97
801 802 3.181967 CGCCCGCGCTATGCTATC 61.182 66.667 5.56 0.00 43.27 2.08
803 804 2.097038 GCCCGCGCTATGCTATCAG 61.097 63.158 5.56 0.00 43.27 2.90
804 805 2.097038 CCCGCGCTATGCTATCAGC 61.097 63.158 5.56 0.00 43.27 4.26
805 806 1.080230 CCGCGCTATGCTATCAGCT 60.080 57.895 5.56 0.00 42.97 4.24
806 807 0.171231 CCGCGCTATGCTATCAGCTA 59.829 55.000 5.56 0.00 42.97 3.32
809 810 2.926200 CGCGCTATGCTATCAGCTAAAT 59.074 45.455 5.56 0.00 42.97 1.40
810 811 3.241900 CGCGCTATGCTATCAGCTAAATG 60.242 47.826 5.56 0.00 42.97 2.32
811 812 3.063180 GCGCTATGCTATCAGCTAAATGG 59.937 47.826 0.00 0.00 42.97 3.16
812 813 3.620374 CGCTATGCTATCAGCTAAATGGG 59.380 47.826 0.00 0.00 42.97 4.00
814 815 2.276732 TGCTATCAGCTAAATGGGCC 57.723 50.000 0.00 0.00 42.97 5.80
815 816 1.776667 TGCTATCAGCTAAATGGGCCT 59.223 47.619 4.53 0.00 42.97 5.19
816 817 2.224621 TGCTATCAGCTAAATGGGCCTC 60.225 50.000 4.53 0.00 42.97 4.70
817 818 2.693069 CTATCAGCTAAATGGGCCTCG 58.307 52.381 4.53 0.00 0.00 4.63
818 819 0.109342 ATCAGCTAAATGGGCCTCGG 59.891 55.000 4.53 0.00 0.00 4.63
819 820 2.189499 CAGCTAAATGGGCCTCGGC 61.189 63.158 4.53 0.00 41.06 5.54
829 830 3.151022 GCCTCGGCCTACAGAGCT 61.151 66.667 0.00 0.00 33.39 4.09
830 831 3.124686 CCTCGGCCTACAGAGCTC 58.875 66.667 5.27 5.27 33.39 4.09
831 832 1.454847 CCTCGGCCTACAGAGCTCT 60.455 63.158 11.45 11.45 33.39 4.09
832 833 1.040339 CCTCGGCCTACAGAGCTCTT 61.040 60.000 15.27 8.53 33.39 2.85
833 834 0.383949 CTCGGCCTACAGAGCTCTTC 59.616 60.000 15.27 0.87 0.00 2.87
834 835 1.064946 CGGCCTACAGAGCTCTTCG 59.935 63.158 15.27 6.50 0.00 3.79
835 836 1.227118 GGCCTACAGAGCTCTTCGC 60.227 63.158 15.27 12.60 39.57 4.70
836 837 1.587613 GCCTACAGAGCTCTTCGCG 60.588 63.158 15.27 5.25 45.59 5.87
837 838 1.803943 CCTACAGAGCTCTTCGCGT 59.196 57.895 15.27 11.63 45.59 6.01
838 839 0.248296 CCTACAGAGCTCTTCGCGTC 60.248 60.000 15.27 0.00 45.59 5.19
839 840 0.587737 CTACAGAGCTCTTCGCGTCG 60.588 60.000 15.27 3.18 45.59 5.12
840 841 2.579241 TACAGAGCTCTTCGCGTCGC 62.579 60.000 15.27 7.29 45.59 5.19
841 842 3.436055 AGAGCTCTTCGCGTCGCT 61.436 61.111 11.45 9.94 45.59 4.93
842 843 2.947109 GAGCTCTTCGCGTCGCTC 60.947 66.667 16.36 19.32 45.59 5.03
843 844 4.820610 AGCTCTTCGCGTCGCTCG 62.821 66.667 16.36 0.08 45.59 5.03
852 853 2.998667 CGTCGCTCGCCTCAATTC 59.001 61.111 0.00 0.00 0.00 2.17
854 855 1.516386 GTCGCTCGCCTCAATTCGA 60.516 57.895 0.00 0.00 0.00 3.71
855 856 1.516386 TCGCTCGCCTCAATTCGAC 60.516 57.895 0.00 0.00 0.00 4.20
856 857 2.849966 CGCTCGCCTCAATTCGACG 61.850 63.158 0.00 0.00 0.00 5.12
858 859 1.805539 CTCGCCTCAATTCGACGCA 60.806 57.895 0.00 0.00 0.00 5.24
859 860 1.746727 CTCGCCTCAATTCGACGCAG 61.747 60.000 0.00 0.00 0.00 5.18
860 861 1.805539 CGCCTCAATTCGACGCAGA 60.806 57.895 0.00 0.00 0.00 4.26
861 862 1.351430 CGCCTCAATTCGACGCAGAA 61.351 55.000 0.00 0.00 34.31 3.02
880 881 5.514279 CAGAATGCGTCAAATAGGAAATCC 58.486 41.667 0.00 0.00 0.00 3.01
881 882 4.273480 AGAATGCGTCAAATAGGAAATCCG 59.727 41.667 0.00 0.00 42.08 4.18
884 885 2.743838 GCGTCAAATAGGAAATCCGGGA 60.744 50.000 0.00 0.00 42.08 5.14
885 886 3.131396 CGTCAAATAGGAAATCCGGGAG 58.869 50.000 0.00 0.00 42.08 4.30
886 887 3.181469 CGTCAAATAGGAAATCCGGGAGA 60.181 47.826 0.00 0.00 42.08 3.71
887 888 4.127907 GTCAAATAGGAAATCCGGGAGAC 58.872 47.826 0.00 0.00 42.08 3.36
888 889 3.778075 TCAAATAGGAAATCCGGGAGACA 59.222 43.478 0.00 0.00 42.08 3.41
889 890 4.226394 TCAAATAGGAAATCCGGGAGACAA 59.774 41.667 0.00 0.00 42.08 3.18
890 891 4.423625 AATAGGAAATCCGGGAGACAAG 57.576 45.455 0.00 0.00 42.08 3.16
892 893 0.107165 GGAAATCCGGGAGACAAGGG 60.107 60.000 0.00 0.00 0.00 3.95
893 894 0.107165 GAAATCCGGGAGACAAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
894 895 0.845102 AAATCCGGGAGACAAGGGGT 60.845 55.000 0.00 0.00 0.00 4.95
895 896 0.845102 AATCCGGGAGACAAGGGGTT 60.845 55.000 0.00 0.00 0.00 4.11
896 897 1.562672 ATCCGGGAGACAAGGGGTTG 61.563 60.000 0.00 0.00 0.00 3.77
931 1012 2.603173 GCCGTATTATTGCTGCTTGCTC 60.603 50.000 0.00 0.00 43.37 4.26
934 1015 3.303593 CGTATTATTGCTGCTTGCTCCTG 60.304 47.826 0.00 0.00 43.37 3.86
1043 1126 0.179089 CCAGACCAGAGCTCCAATCG 60.179 60.000 10.93 2.50 0.00 3.34
1194 1277 3.996921 AGAGCTCATCCATCTGTTGTT 57.003 42.857 17.77 0.00 0.00 2.83
1303 1386 5.120399 TGTTTGGTTCAGTCTACGAAATGT 58.880 37.500 0.00 0.00 0.00 2.71
1369 1453 3.826157 GTGGAATGTGGAATGTTTCTCCA 59.174 43.478 0.00 0.00 40.77 3.86
1382 1466 8.743714 GGAATGTTTCTCCAAGAACATTATCTT 58.256 33.333 12.72 0.00 40.23 2.40
1501 1585 7.624974 GCGGTCTAAGAAAATTTTACCTACACC 60.625 40.741 14.78 10.81 0.00 4.16
1556 1640 1.617322 AGTCTGCACCAAGTCGTAGA 58.383 50.000 0.00 0.00 0.00 2.59
1779 1863 1.966451 CTTGGTCCGGTGGTTCAGC 60.966 63.158 0.00 0.00 0.00 4.26
1953 2037 4.081697 TCGTAAACTTCATGATCTCCTGCA 60.082 41.667 0.00 0.00 0.00 4.41
1988 2072 4.202441 ACTTTCACAAGTCTGTTGATGCT 58.798 39.130 0.00 0.00 39.15 3.79
2012 2096 2.742856 CGGAAGCATGCAGAGTATTCCA 60.743 50.000 25.23 0.00 36.77 3.53
2092 2176 6.698008 AGTTCAAATTGTGACACAGAATGA 57.302 33.333 8.55 10.98 35.96 2.57
2239 2323 2.033141 GCTCTCCAGTGCCAAGCA 59.967 61.111 4.54 0.00 35.60 3.91
2470 2554 4.862574 TGATTACACGTATGACTGCTTGAC 59.137 41.667 0.00 0.00 0.00 3.18
2648 2732 3.854994 AGGAGGGGTCAGAAGATTTGAAT 59.145 43.478 0.00 0.00 0.00 2.57
2685 2769 1.951209 TGACAGGAGGGTTGCAGATA 58.049 50.000 0.00 0.00 0.00 1.98
2727 2811 5.245531 TGATTGCAGGTAAGGACTAAGTTG 58.754 41.667 0.00 0.00 0.00 3.16
2812 2898 1.446907 CTGGTGTGCTTGATCCTGAC 58.553 55.000 0.00 0.00 0.00 3.51
2843 2929 3.165058 AGCATGATCTTGCAAGCAATG 57.835 42.857 29.04 21.85 45.23 2.82
2974 3060 4.396166 AGGTTTGACAAAGATATTGCTCGG 59.604 41.667 0.00 0.00 0.00 4.63
3054 3145 0.249657 CTCCTTCAGGGCTATGCGAC 60.250 60.000 0.00 0.00 35.41 5.19
3064 3155 2.545113 GGGCTATGCGACTCGAATTGTA 60.545 50.000 1.63 0.00 0.00 2.41
3091 3182 3.101643 TGTATGTCCTCTAGCAGGTGT 57.898 47.619 7.76 0.77 43.95 4.16
3174 3265 4.142403 TGAAAAGCTTCACAAGTTGGTCTG 60.142 41.667 7.96 0.00 36.62 3.51
3382 3473 5.220931 CGAAAAAGATGAATGTGATCTCCCC 60.221 44.000 0.00 0.00 29.52 4.81
3551 3642 5.645929 ACTGATAATAATGGTTCGTTGCACA 59.354 36.000 0.00 0.00 0.00 4.57
3728 3822 2.719531 TCAAGTGCCAACCTAACACA 57.280 45.000 0.00 0.00 36.76 3.72
3732 3826 2.229792 AGTGCCAACCTAACACACATG 58.770 47.619 0.00 0.00 36.76 3.21
3733 3827 2.158682 AGTGCCAACCTAACACACATGA 60.159 45.455 0.00 0.00 36.76 3.07
3734 3828 2.031157 GTGCCAACCTAACACACATGAC 60.031 50.000 0.00 0.00 34.43 3.06
3735 3829 2.226330 GCCAACCTAACACACATGACA 58.774 47.619 0.00 0.00 0.00 3.58
3858 3952 1.117150 GGTAGAACGGATGGCCAGTA 58.883 55.000 13.05 0.00 0.00 2.74
3894 3988 2.492567 CCTGAAATCCAAAACCTGGGGA 60.493 50.000 0.00 0.00 46.44 4.81
3899 3993 0.696501 TCCAAAACCTGGGGAGCTAC 59.303 55.000 0.00 0.00 46.44 3.58
3910 4004 1.972075 GGGGAGCTACATCTTAGGGTC 59.028 57.143 0.00 0.00 0.00 4.46
3937 4031 4.489810 TCTCTTGCTGATTTCGAACTCTC 58.510 43.478 15.49 8.64 0.00 3.20
3980 4074 9.958180 TTGTGATTTTTAATGACCTCTCTGATA 57.042 29.630 0.00 0.00 0.00 2.15
4127 4221 4.741837 GCCTTTGGAATCTCTGATCGATGA 60.742 45.833 0.54 0.00 0.00 2.92
4304 4399 3.562557 TCCACTTTACGCCAAGAAAAGTC 59.437 43.478 1.32 0.00 40.52 3.01
4339 4434 6.040842 ACAATCCAGTAGCATTGACAAAACTT 59.959 34.615 0.00 0.00 34.60 2.66
4340 4435 5.689383 TCCAGTAGCATTGACAAAACTTC 57.311 39.130 0.00 0.00 0.00 3.01
4341 4436 5.129634 TCCAGTAGCATTGACAAAACTTCA 58.870 37.500 0.00 0.00 0.00 3.02
4451 4584 1.002134 AACCGAGCCCAACATCCTG 60.002 57.895 0.00 0.00 0.00 3.86
4511 4644 2.749865 GCATGCTTCGCGTTAGCCA 61.750 57.895 25.15 16.78 41.18 4.75
4520 4653 0.026803 CGCGTTAGCCAGAATCTTGC 59.973 55.000 0.00 0.00 41.18 4.01
4550 4683 1.901833 ACATTGCCCCCAAAGATCAAC 59.098 47.619 0.00 0.00 34.05 3.18
4635 4775 2.489329 CAAGGATCAACTTTGCCGATGT 59.511 45.455 0.00 0.00 0.00 3.06
4636 4776 2.359900 AGGATCAACTTTGCCGATGTC 58.640 47.619 0.00 0.00 0.00 3.06
4654 4794 2.281484 GGCACCAGTCTTCGCCAA 60.281 61.111 0.00 0.00 44.25 4.52
4676 4816 4.605640 TGTGGTGTACAAACCCTACTAC 57.394 45.455 0.00 0.00 39.70 2.73
4742 4882 0.313672 TTGCGCCAAACTCCATTCAC 59.686 50.000 4.18 0.00 0.00 3.18
4768 4908 6.369065 GGGAAACTCATGTAACTGTTGACTAG 59.631 42.308 2.69 0.00 0.00 2.57
4789 4929 1.468520 CGTTTTCGCTGGGATCACAAT 59.531 47.619 0.00 0.00 36.22 2.71
4877 5017 2.793232 GTCGACAATCCAACCGTATAGC 59.207 50.000 11.55 0.00 0.00 2.97
4957 5097 3.153024 GCATGAGCACGGTAGGAAA 57.847 52.632 0.00 0.00 41.58 3.13
4958 5098 0.727398 GCATGAGCACGGTAGGAAAC 59.273 55.000 0.00 0.00 41.58 2.78
4963 5103 2.614983 TGAGCACGGTAGGAAACAAAAC 59.385 45.455 0.00 0.00 0.00 2.43
4968 5108 4.806775 GCACGGTAGGAAACAAAACAAAAT 59.193 37.500 0.00 0.00 0.00 1.82
4969 5109 5.978322 GCACGGTAGGAAACAAAACAAAATA 59.022 36.000 0.00 0.00 0.00 1.40
4973 5113 9.036671 ACGGTAGGAAACAAAACAAAATAATTG 57.963 29.630 0.00 0.00 0.00 2.32
4980 5120 7.911362 AACAAAACAAAATAATTGTGCATGC 57.089 28.000 11.82 11.82 36.23 4.06
4998 5138 3.663995 TGCACTGCAAGCATAAACAAT 57.336 38.095 9.24 0.00 37.60 2.71
4999 5139 4.780275 TGCACTGCAAGCATAAACAATA 57.220 36.364 9.24 0.00 37.60 1.90
5000 5140 5.327616 TGCACTGCAAGCATAAACAATAT 57.672 34.783 9.24 0.00 37.60 1.28
5001 5141 6.448207 TGCACTGCAAGCATAAACAATATA 57.552 33.333 9.24 0.00 37.60 0.86
5002 5142 6.861144 TGCACTGCAAGCATAAACAATATAA 58.139 32.000 9.24 0.00 37.60 0.98
5003 5143 7.490840 TGCACTGCAAGCATAAACAATATAAT 58.509 30.769 9.24 0.00 37.60 1.28
5026 5166 7.873739 ATAAAGATTTAGCAACACAACTTGC 57.126 32.000 0.00 0.00 45.93 4.01
5041 5181 4.402474 ACAACTTGCAGGAAGCTTTAAAGT 59.598 37.500 16.38 4.07 45.94 2.66
5042 5182 5.592688 ACAACTTGCAGGAAGCTTTAAAGTA 59.407 36.000 16.38 0.00 45.94 2.24
5049 5189 5.920840 GCAGGAAGCTTTAAAGTAAGGTTTG 59.079 40.000 16.38 8.06 43.64 2.93
5118 5258 5.970592 TCTCTCTTGTGGTATGAAGACATG 58.029 41.667 0.00 0.00 37.87 3.21
5129 5269 5.468072 GGTATGAAGACATGTAAGATGCCAG 59.532 44.000 0.00 0.00 37.87 4.85
5197 5337 1.270358 ACTCCAAGTCACTTTCCGAGC 60.270 52.381 6.11 0.00 0.00 5.03
5207 5347 3.006859 TCACTTTCCGAGCAATCTCTCAA 59.993 43.478 0.00 0.00 37.19 3.02
5217 5357 6.183360 CCGAGCAATCTCTCAAAAACATATGT 60.183 38.462 1.41 1.41 37.19 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.121696 CGCTTTCAAAAGAATGTTCGCAC 60.122 43.478 6.67 0.00 38.28 5.34
1 2 3.042189 CGCTTTCAAAAGAATGTTCGCA 58.958 40.909 6.67 0.00 38.28 5.10
2 3 2.160104 GCGCTTTCAAAAGAATGTTCGC 60.160 45.455 0.00 6.87 38.28 4.70
3 4 2.087451 CGCGCTTTCAAAAGAATGTTCG 59.913 45.455 5.56 1.03 38.28 3.95
4 5 2.405025 CCGCGCTTTCAAAAGAATGTTC 59.595 45.455 5.56 0.00 38.28 3.18
5 6 2.034053 TCCGCGCTTTCAAAAGAATGTT 59.966 40.909 5.56 0.00 38.28 2.71
6 7 1.606668 TCCGCGCTTTCAAAAGAATGT 59.393 42.857 5.56 0.00 38.28 2.71
8 9 1.606668 TGTCCGCGCTTTCAAAAGAAT 59.393 42.857 5.56 0.00 38.28 2.40
9 10 1.018148 TGTCCGCGCTTTCAAAAGAA 58.982 45.000 5.56 0.00 38.28 2.52
11 12 2.050477 AATGTCCGCGCTTTCAAAAG 57.950 45.000 5.56 0.00 39.03 2.27
12 13 2.500509 AAATGTCCGCGCTTTCAAAA 57.499 40.000 5.56 0.00 0.00 2.44
13 14 2.500509 AAAATGTCCGCGCTTTCAAA 57.499 40.000 5.56 0.00 0.00 2.69
14 15 2.223595 TGAAAAATGTCCGCGCTTTCAA 60.224 40.909 14.11 1.79 34.10 2.69
15 16 1.335182 TGAAAAATGTCCGCGCTTTCA 59.665 42.857 12.89 12.89 34.51 2.69
16 17 2.044888 TGAAAAATGTCCGCGCTTTC 57.955 45.000 5.56 7.46 0.00 2.62
17 18 2.723124 ATGAAAAATGTCCGCGCTTT 57.277 40.000 5.56 0.00 0.00 3.51
18 19 3.840890 TTATGAAAAATGTCCGCGCTT 57.159 38.095 5.56 0.00 0.00 4.68
19 20 3.427503 CCTTTATGAAAAATGTCCGCGCT 60.428 43.478 5.56 0.00 0.00 5.92
20 21 2.851824 CCTTTATGAAAAATGTCCGCGC 59.148 45.455 0.00 0.00 0.00 6.86
21 22 2.851824 GCCTTTATGAAAAATGTCCGCG 59.148 45.455 0.00 0.00 0.00 6.46
22 23 2.851824 CGCCTTTATGAAAAATGTCCGC 59.148 45.455 0.00 0.00 0.00 5.54
23 24 4.349663 TCGCCTTTATGAAAAATGTCCG 57.650 40.909 0.00 0.00 0.00 4.79
24 25 4.862574 GGTTCGCCTTTATGAAAAATGTCC 59.137 41.667 0.00 0.00 0.00 4.02
55 56 9.528018 ACGTTTTTCAAGATAATGTTCACATTT 57.472 25.926 10.38 0.00 43.48 2.32
57 58 8.349245 TCACGTTTTTCAAGATAATGTTCACAT 58.651 29.630 0.00 0.00 38.41 3.21
58 59 7.698628 TCACGTTTTTCAAGATAATGTTCACA 58.301 30.769 0.00 0.00 0.00 3.58
59 60 7.855904 ACTCACGTTTTTCAAGATAATGTTCAC 59.144 33.333 0.00 0.00 0.00 3.18
60 61 7.925993 ACTCACGTTTTTCAAGATAATGTTCA 58.074 30.769 0.00 0.00 0.00 3.18
61 62 8.682016 CAACTCACGTTTTTCAAGATAATGTTC 58.318 33.333 0.00 0.00 0.00 3.18
62 63 8.188139 ACAACTCACGTTTTTCAAGATAATGTT 58.812 29.630 0.00 0.00 0.00 2.71
63 64 7.703328 ACAACTCACGTTTTTCAAGATAATGT 58.297 30.769 0.00 0.00 0.00 2.71
64 65 8.560576 AACAACTCACGTTTTTCAAGATAATG 57.439 30.769 0.00 0.00 0.00 1.90
65 66 9.233232 GAAACAACTCACGTTTTTCAAGATAAT 57.767 29.630 0.00 0.00 36.72 1.28
67 68 7.908082 CAGAAACAACTCACGTTTTTCAAGATA 59.092 33.333 0.00 0.00 36.72 1.98
69 70 6.072948 TCAGAAACAACTCACGTTTTTCAAGA 60.073 34.615 0.00 0.00 36.72 3.02
70 71 6.083630 TCAGAAACAACTCACGTTTTTCAAG 58.916 36.000 0.00 0.00 36.72 3.02
71 72 6.003234 TCAGAAACAACTCACGTTTTTCAA 57.997 33.333 0.00 0.00 36.72 2.69
73 74 6.921332 TTTCAGAAACAACTCACGTTTTTC 57.079 33.333 0.00 0.00 36.72 2.29
74 75 7.883229 AATTTCAGAAACAACTCACGTTTTT 57.117 28.000 0.00 0.00 36.72 1.94
75 76 7.883229 AAATTTCAGAAACAACTCACGTTTT 57.117 28.000 0.00 0.00 36.72 2.43
77 78 6.685403 CGTAAATTTCAGAAACAACTCACGTT 59.315 34.615 0.00 0.00 0.00 3.99
78 79 6.036300 TCGTAAATTTCAGAAACAACTCACGT 59.964 34.615 0.00 0.00 0.00 4.49
79 80 6.415702 TCGTAAATTTCAGAAACAACTCACG 58.584 36.000 0.00 3.39 0.00 4.35
80 81 7.694784 TGTTCGTAAATTTCAGAAACAACTCAC 59.305 33.333 0.00 0.00 0.00 3.51
81 82 7.753659 TGTTCGTAAATTTCAGAAACAACTCA 58.246 30.769 0.00 1.93 0.00 3.41
83 84 9.581099 AAATGTTCGTAAATTTCAGAAACAACT 57.419 25.926 0.00 1.31 0.00 3.16
108 109 6.228273 TGAAAATGTGCGTGTTTTCAAAAA 57.772 29.167 15.92 0.00 45.85 1.94
109 110 5.845985 TGAAAATGTGCGTGTTTTCAAAA 57.154 30.435 15.92 0.00 45.85 2.44
112 113 4.489810 AGTTGAAAATGTGCGTGTTTTCA 58.510 34.783 14.87 14.87 46.64 2.69
113 114 4.798387 AGAGTTGAAAATGTGCGTGTTTTC 59.202 37.500 11.20 11.20 42.05 2.29
114 115 4.743493 AGAGTTGAAAATGTGCGTGTTTT 58.257 34.783 0.00 0.00 0.00 2.43
115 116 4.370364 AGAGTTGAAAATGTGCGTGTTT 57.630 36.364 0.00 0.00 0.00 2.83
116 117 4.551990 CGTAGAGTTGAAAATGTGCGTGTT 60.552 41.667 0.00 0.00 0.00 3.32
117 118 3.059868 CGTAGAGTTGAAAATGTGCGTGT 60.060 43.478 0.00 0.00 0.00 4.49
119 120 3.386486 TCGTAGAGTTGAAAATGTGCGT 58.614 40.909 0.00 0.00 0.00 5.24
120 121 4.141680 GTTCGTAGAGTTGAAAATGTGCG 58.858 43.478 0.00 0.00 38.43 5.34
121 122 5.090652 TGTTCGTAGAGTTGAAAATGTGC 57.909 39.130 0.00 0.00 38.43 4.57
122 123 8.471457 CAAAATGTTCGTAGAGTTGAAAATGTG 58.529 33.333 0.00 0.00 38.43 3.21
123 124 8.402472 TCAAAATGTTCGTAGAGTTGAAAATGT 58.598 29.630 0.00 0.00 38.43 2.71
124 125 8.781067 TCAAAATGTTCGTAGAGTTGAAAATG 57.219 30.769 0.00 0.00 38.43 2.32
126 127 9.627395 TTTTCAAAATGTTCGTAGAGTTGAAAA 57.373 25.926 15.59 15.59 38.43 2.29
127 128 9.068008 GTTTTCAAAATGTTCGTAGAGTTGAAA 57.932 29.630 8.46 8.46 38.43 2.69
128 129 7.427030 CGTTTTCAAAATGTTCGTAGAGTTGAA 59.573 33.333 0.00 0.00 38.43 2.69
129 130 6.902948 CGTTTTCAAAATGTTCGTAGAGTTGA 59.097 34.615 0.00 0.00 38.43 3.18
131 132 5.679792 GCGTTTTCAAAATGTTCGTAGAGTT 59.320 36.000 4.02 0.00 38.43 3.01
132 133 5.202640 GCGTTTTCAAAATGTTCGTAGAGT 58.797 37.500 4.02 0.00 38.43 3.24
133 134 5.201910 TGCGTTTTCAAAATGTTCGTAGAG 58.798 37.500 4.02 0.00 38.43 2.43
134 135 5.158101 TGCGTTTTCAAAATGTTCGTAGA 57.842 34.783 4.02 0.00 0.00 2.59
135 136 5.858159 TTGCGTTTTCAAAATGTTCGTAG 57.142 34.783 4.02 0.00 0.00 3.51
136 137 6.627690 TTTTGCGTTTTCAAAATGTTCGTA 57.372 29.167 4.02 0.00 39.99 3.43
137 138 5.517037 TTTTGCGTTTTCAAAATGTTCGT 57.483 30.435 4.02 0.00 39.99 3.85
158 159 8.835439 GTGTTGTCATAAATGTTCCCAATTTTT 58.165 29.630 0.00 0.00 0.00 1.94
159 160 7.170658 CGTGTTGTCATAAATGTTCCCAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
160 161 6.644592 CGTGTTGTCATAAATGTTCCCAATTT 59.355 34.615 0.00 0.00 0.00 1.82
161 162 6.015856 TCGTGTTGTCATAAATGTTCCCAATT 60.016 34.615 0.00 0.00 0.00 2.32
162 163 5.475220 TCGTGTTGTCATAAATGTTCCCAAT 59.525 36.000 0.00 0.00 0.00 3.16
164 165 4.390264 TCGTGTTGTCATAAATGTTCCCA 58.610 39.130 0.00 0.00 0.00 4.37
165 166 5.365403 TTCGTGTTGTCATAAATGTTCCC 57.635 39.130 0.00 0.00 0.00 3.97
166 167 9.567848 AAATATTCGTGTTGTCATAAATGTTCC 57.432 29.630 0.00 0.00 0.00 3.62
173 174 9.952188 TTGAACAAAATATTCGTGTTGTCATAA 57.048 25.926 17.64 6.33 35.67 1.90
174 175 9.952188 TTTGAACAAAATATTCGTGTTGTCATA 57.048 25.926 17.64 7.25 35.67 2.15
175 176 8.864069 TTTGAACAAAATATTCGTGTTGTCAT 57.136 26.923 17.64 0.17 35.67 3.06
176 177 8.864069 ATTTGAACAAAATATTCGTGTTGTCA 57.136 26.923 17.64 10.51 36.69 3.58
178 179 9.913451 CAAATTTGAACAAAATATTCGTGTTGT 57.087 25.926 13.08 9.11 37.51 3.32
180 181 9.913451 CACAAATTTGAACAAAATATTCGTGTT 57.087 25.926 24.64 14.25 37.51 3.32
233 234 9.384764 CAACCCTGGTGTTCTTAAATTTTAAAA 57.615 29.630 2.51 2.51 0.00 1.52
234 235 8.759782 TCAACCCTGGTGTTCTTAAATTTTAAA 58.240 29.630 0.00 0.00 0.00 1.52
237 238 6.609616 TCTCAACCCTGGTGTTCTTAAATTTT 59.390 34.615 0.00 0.00 0.00 1.82
238 239 6.133356 TCTCAACCCTGGTGTTCTTAAATTT 58.867 36.000 0.00 0.00 0.00 1.82
240 241 5.319043 TCTCAACCCTGGTGTTCTTAAAT 57.681 39.130 0.00 0.00 0.00 1.40
241 242 4.781775 TCTCAACCCTGGTGTTCTTAAA 57.218 40.909 0.00 0.00 0.00 1.52
242 243 4.506625 CCATCTCAACCCTGGTGTTCTTAA 60.507 45.833 0.00 0.00 0.00 1.85
243 244 3.009033 CCATCTCAACCCTGGTGTTCTTA 59.991 47.826 0.00 0.00 0.00 2.10
244 245 2.224867 CCATCTCAACCCTGGTGTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
246 247 1.073923 ACCATCTCAACCCTGGTGTTC 59.926 52.381 0.00 0.00 41.65 3.18
247 248 1.149101 ACCATCTCAACCCTGGTGTT 58.851 50.000 0.00 0.00 41.65 3.32
250 251 1.916181 CCTAACCATCTCAACCCTGGT 59.084 52.381 0.00 0.00 45.08 4.00
252 253 2.356125 CCACCTAACCATCTCAACCCTG 60.356 54.545 0.00 0.00 0.00 4.45
253 254 1.916181 CCACCTAACCATCTCAACCCT 59.084 52.381 0.00 0.00 0.00 4.34
254 255 1.913419 TCCACCTAACCATCTCAACCC 59.087 52.381 0.00 0.00 0.00 4.11
256 257 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
259 260 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
260 261 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
261 262 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
262 263 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
264 265 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
265 266 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
296 297 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
297 298 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
298 299 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
299 300 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
300 301 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
301 302 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
302 303 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
307 308 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
308 309 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
309 310 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
310 311 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
311 312 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
312 313 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
314 315 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
316 317 8.352201 TCCTGAAATAAATCCAGAAATAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
323 324 7.147915 CCGGAAATCCTGAAATAAATCCAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
324 325 6.321181 CCGGAAATCCTGAAATAAATCCAGAA 59.679 38.462 0.00 0.00 0.00 3.02
326 327 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
327 328 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
328 329 4.340950 TGCCGGAAATCCTGAAATAAATCC 59.659 41.667 5.05 0.00 0.00 3.01
329 330 5.514274 TGCCGGAAATCCTGAAATAAATC 57.486 39.130 5.05 0.00 0.00 2.17
330 331 5.930837 TTGCCGGAAATCCTGAAATAAAT 57.069 34.783 5.05 0.00 0.00 1.40
333 334 3.068024 GCATTGCCGGAAATCCTGAAATA 59.932 43.478 4.04 0.00 0.00 1.40
334 335 2.159057 GCATTGCCGGAAATCCTGAAAT 60.159 45.455 4.04 0.00 0.00 2.17
335 336 1.204467 GCATTGCCGGAAATCCTGAAA 59.796 47.619 4.04 0.00 0.00 2.69
337 338 1.375853 CGCATTGCCGGAAATCCTGA 61.376 55.000 4.04 0.00 0.00 3.86
338 339 1.064621 CGCATTGCCGGAAATCCTG 59.935 57.895 4.04 0.00 0.00 3.86
339 340 2.774799 GCGCATTGCCGGAAATCCT 61.775 57.895 4.04 0.00 37.76 3.24
340 341 2.278792 GCGCATTGCCGGAAATCC 60.279 61.111 4.04 0.00 37.76 3.01
341 342 0.528249 AATGCGCATTGCCGGAAATC 60.528 50.000 33.48 0.00 45.60 2.17
342 343 0.528249 GAATGCGCATTGCCGGAAAT 60.528 50.000 38.34 13.06 45.60 2.17
344 345 2.268988 CTGAATGCGCATTGCCGGAA 62.269 55.000 38.34 15.71 45.60 4.30
345 346 2.749441 TGAATGCGCATTGCCGGA 60.749 55.556 38.34 14.66 45.60 5.14
346 347 2.278336 CTGAATGCGCATTGCCGG 60.278 61.111 38.34 25.15 45.60 6.13
348 349 1.517694 CCACTGAATGCGCATTGCC 60.518 57.895 38.34 24.99 45.60 4.52
350 351 0.099968 CTCCCACTGAATGCGCATTG 59.900 55.000 38.34 26.52 0.00 2.82
351 352 1.033746 CCTCCCACTGAATGCGCATT 61.034 55.000 34.41 34.41 0.00 3.56
352 353 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
355 356 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
356 357 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
357 358 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
360 361 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
361 362 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
362 363 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
381 382 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
383 384 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
384 385 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
385 386 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
398 399 3.573598 TGAAATTTACGAAGTCGCCGTA 58.426 40.909 0.00 0.00 43.93 4.02
399 400 2.406130 TGAAATTTACGAAGTCGCCGT 58.594 42.857 0.00 0.00 43.93 5.68
400 401 3.122278 TCTTGAAATTTACGAAGTCGCCG 59.878 43.478 0.00 0.00 43.93 6.46
401 402 4.657075 TCTTGAAATTTACGAAGTCGCC 57.343 40.909 0.00 0.00 43.93 5.54
402 403 5.854157 TCATCTTGAAATTTACGAAGTCGC 58.146 37.500 0.00 0.00 43.93 5.19
403 404 9.573102 CATATCATCTTGAAATTTACGAAGTCG 57.427 33.333 0.00 0.00 43.93 4.18
404 405 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
406 407 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
407 408 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
410 411 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
411 412 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
412 413 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
413 414 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
414 415 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
416 417 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
417 418 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
418 419 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
420 421 1.346062 ACTGAGCCGGCATATCATCT 58.654 50.000 31.54 4.27 0.00 2.90
422 423 2.645838 AAACTGAGCCGGCATATCAT 57.354 45.000 31.54 6.18 0.00 2.45
424 425 2.286418 CGAAAAACTGAGCCGGCATATC 60.286 50.000 31.54 18.63 0.00 1.63
430 431 0.517316 CCTTCGAAAAACTGAGCCGG 59.483 55.000 0.00 0.00 0.00 6.13
431 432 1.069906 CACCTTCGAAAAACTGAGCCG 60.070 52.381 0.00 0.00 0.00 5.52
434 435 2.872245 TGAGCACCTTCGAAAAACTGAG 59.128 45.455 0.00 0.00 0.00 3.35
435 436 2.912771 TGAGCACCTTCGAAAAACTGA 58.087 42.857 0.00 0.00 0.00 3.41
436 437 3.904136 ATGAGCACCTTCGAAAAACTG 57.096 42.857 0.00 0.00 0.00 3.16
438 439 3.127030 CCCTATGAGCACCTTCGAAAAAC 59.873 47.826 0.00 0.00 0.00 2.43
439 440 3.343617 CCCTATGAGCACCTTCGAAAAA 58.656 45.455 0.00 0.00 0.00 1.94
441 442 1.209504 CCCCTATGAGCACCTTCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
442 443 0.830648 CCCCTATGAGCACCTTCGAA 59.169 55.000 0.00 0.00 0.00 3.71
443 444 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
444 445 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
445 446 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
446 447 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
447 448 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
448 449 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
449 450 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
450 451 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
451 452 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
454 455 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
456 457 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
458 459 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
459 460 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
460 461 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
461 462 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
462 463 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
465 466 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
466 467 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
470 471 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
471 472 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
472 473 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
473 474 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
474 475 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
475 476 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
476 477 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
478 479 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
479 480 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
480 481 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
481 482 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
482 483 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
483 484 1.412710 ACGCATACACTCACCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
486 487 1.192146 ACACGCATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
487 488 1.019278 CACACGCATACACTCACCCC 61.019 60.000 0.00 0.00 0.00 4.95
488 489 0.320421 ACACACGCATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
489 490 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
490 491 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
491 492 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
492 493 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
493 494 4.299155 GCTCATATACACACGCATACACT 58.701 43.478 0.00 0.00 0.00 3.55
494 495 3.119628 CGCTCATATACACACGCATACAC 59.880 47.826 0.00 0.00 0.00 2.90
496 497 2.090658 GCGCTCATATACACACGCATAC 59.909 50.000 0.00 0.00 45.25 2.39
498 499 1.139989 GCGCTCATATACACACGCAT 58.860 50.000 0.00 0.00 45.25 4.73
500 501 1.071239 CAAGCGCTCATATACACACGC 60.071 52.381 12.06 0.00 46.20 5.34
501 502 2.034591 CACAAGCGCTCATATACACACG 60.035 50.000 12.06 0.00 0.00 4.49
502 503 2.930040 ACACAAGCGCTCATATACACAC 59.070 45.455 12.06 0.00 0.00 3.82
504 505 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
507 508 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
509 510 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
511 512 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
512 513 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
513 514 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
514 515 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
515 516 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
516 517 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
517 518 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
518 519 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
519 520 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
584 585 9.956720 TTTCTGTTTCTTTTTCAAAAATTTGCA 57.043 22.222 0.00 0.00 38.05 4.08
593 594 8.998377 CCTTTCCTTTTTCTGTTTCTTTTTCAA 58.002 29.630 0.00 0.00 0.00 2.69
672 673 8.684386 TTTGGTTTTTCCTTTCTGTTTCTTTT 57.316 26.923 0.00 0.00 37.07 2.27
674 675 8.684386 TTTTTGGTTTTTCCTTTCTGTTTCTT 57.316 26.923 0.00 0.00 37.07 2.52
675 676 8.154203 TCTTTTTGGTTTTTCCTTTCTGTTTCT 58.846 29.630 0.00 0.00 37.07 2.52
676 677 8.317891 TCTTTTTGGTTTTTCCTTTCTGTTTC 57.682 30.769 0.00 0.00 37.07 2.78
677 678 8.684386 TTCTTTTTGGTTTTTCCTTTCTGTTT 57.316 26.923 0.00 0.00 37.07 2.83
678 679 8.684386 TTTCTTTTTGGTTTTTCCTTTCTGTT 57.316 26.923 0.00 0.00 37.07 3.16
679 680 8.564574 GTTTTCTTTTTGGTTTTTCCTTTCTGT 58.435 29.630 0.00 0.00 37.07 3.41
680 681 8.783093 AGTTTTCTTTTTGGTTTTTCCTTTCTG 58.217 29.630 0.00 0.00 37.07 3.02
683 684 9.787435 ACTAGTTTTCTTTTTGGTTTTTCCTTT 57.213 25.926 0.00 0.00 37.07 3.11
690 691 9.478768 TTTCGAAACTAGTTTTCTTTTTGGTTT 57.521 25.926 21.40 0.00 41.48 3.27
691 692 9.478768 TTTTCGAAACTAGTTTTCTTTTTGGTT 57.521 25.926 21.40 0.00 41.48 3.67
692 693 9.478768 TTTTTCGAAACTAGTTTTCTTTTTGGT 57.521 25.926 21.40 0.00 41.48 3.67
693 694 9.735646 GTTTTTCGAAACTAGTTTTCTTTTTGG 57.264 29.630 21.40 0.00 41.48 3.28
697 698 9.465985 TGTTGTTTTTCGAAACTAGTTTTCTTT 57.534 25.926 21.40 0.00 41.48 2.52
700 701 7.751793 TCCTGTTGTTTTTCGAAACTAGTTTTC 59.248 33.333 21.40 13.33 40.40 2.29
701 702 7.595604 TCCTGTTGTTTTTCGAAACTAGTTTT 58.404 30.769 21.40 6.19 33.95 2.43
702 703 7.148355 TCCTGTTGTTTTTCGAAACTAGTTT 57.852 32.000 20.67 20.67 33.95 2.66
704 705 6.746745 TTCCTGTTGTTTTTCGAAACTAGT 57.253 33.333 10.79 0.00 33.95 2.57
705 706 8.455598 TTTTTCCTGTTGTTTTTCGAAACTAG 57.544 30.769 10.79 3.14 33.95 2.57
729 730 2.417978 GTTCCCCGAACCGGTTTTT 58.582 52.632 23.22 0.00 46.80 1.94
730 731 4.162592 GTTCCCCGAACCGGTTTT 57.837 55.556 23.22 0.00 46.80 2.43
737 738 0.399075 TTCCAGAAGGTTCCCCGAAC 59.601 55.000 0.00 0.00 41.32 3.95
738 739 0.690762 CTTCCAGAAGGTTCCCCGAA 59.309 55.000 0.00 0.00 34.87 4.30
772 773 2.436115 CGGGCGGGAGGTTTTCTC 60.436 66.667 0.00 0.00 41.71 2.87
789 790 3.063180 CCATTTAGCTGATAGCATAGCGC 59.937 47.826 0.00 0.00 45.56 5.92
790 791 3.620374 CCCATTTAGCTGATAGCATAGCG 59.380 47.826 0.00 0.00 45.56 4.26
791 792 3.376546 GCCCATTTAGCTGATAGCATAGC 59.623 47.826 0.00 0.00 45.56 2.97
792 793 3.944015 GGCCCATTTAGCTGATAGCATAG 59.056 47.826 0.00 0.00 45.56 2.23
793 794 3.588842 AGGCCCATTTAGCTGATAGCATA 59.411 43.478 0.00 0.00 45.56 3.14
794 795 2.377869 AGGCCCATTTAGCTGATAGCAT 59.622 45.455 0.00 0.00 45.56 3.79
795 796 1.776667 AGGCCCATTTAGCTGATAGCA 59.223 47.619 0.00 0.00 45.56 3.49
796 797 2.431454 GAGGCCCATTTAGCTGATAGC 58.569 52.381 0.00 0.00 42.84 2.97
797 798 2.613977 CCGAGGCCCATTTAGCTGATAG 60.614 54.545 0.00 0.00 0.00 2.08
798 799 1.347707 CCGAGGCCCATTTAGCTGATA 59.652 52.381 0.00 0.00 0.00 2.15
799 800 0.109342 CCGAGGCCCATTTAGCTGAT 59.891 55.000 0.00 0.00 0.00 2.90
800 801 1.526887 CCGAGGCCCATTTAGCTGA 59.473 57.895 0.00 0.00 0.00 4.26
801 802 2.189499 GCCGAGGCCCATTTAGCTG 61.189 63.158 0.00 0.00 34.56 4.24
812 813 3.145422 GAGCTCTGTAGGCCGAGGC 62.145 68.421 6.43 5.37 41.06 4.70
814 815 0.383949 GAAGAGCTCTGTAGGCCGAG 59.616 60.000 19.06 0.00 0.00 4.63
815 816 1.377366 CGAAGAGCTCTGTAGGCCGA 61.377 60.000 19.06 0.00 0.00 5.54
816 817 1.064946 CGAAGAGCTCTGTAGGCCG 59.935 63.158 19.06 10.29 0.00 6.13
817 818 1.227118 GCGAAGAGCTCTGTAGGCC 60.227 63.158 19.06 0.00 44.04 5.19
818 819 1.587613 CGCGAAGAGCTCTGTAGGC 60.588 63.158 19.06 16.45 45.59 3.93
819 820 0.248296 GACGCGAAGAGCTCTGTAGG 60.248 60.000 19.06 10.12 45.59 3.18
821 822 1.424240 CGACGCGAAGAGCTCTGTA 59.576 57.895 19.06 0.00 45.59 2.74
823 824 3.243892 GCGACGCGAAGAGCTCTG 61.244 66.667 19.06 6.88 45.59 3.35
824 825 3.389727 GAGCGACGCGAAGAGCTCT 62.390 63.158 27.79 11.45 44.25 4.09
825 826 2.947109 GAGCGACGCGAAGAGCTC 60.947 66.667 24.09 24.09 45.59 4.09
835 836 2.849966 CGAATTGAGGCGAGCGACG 61.850 63.158 0.00 0.00 45.66 5.12
836 837 1.516386 TCGAATTGAGGCGAGCGAC 60.516 57.895 0.00 0.00 32.13 5.19
837 838 1.516386 GTCGAATTGAGGCGAGCGA 60.516 57.895 0.00 0.00 37.18 4.93
838 839 2.849966 CGTCGAATTGAGGCGAGCG 61.850 63.158 0.00 0.00 39.29 5.03
839 840 2.998667 CGTCGAATTGAGGCGAGC 59.001 61.111 0.00 0.00 39.29 5.03
856 857 4.355543 TTTCCTATTTGACGCATTCTGC 57.644 40.909 0.00 0.00 40.69 4.26
858 859 4.273480 CGGATTTCCTATTTGACGCATTCT 59.727 41.667 0.00 0.00 0.00 2.40
859 860 4.527564 CGGATTTCCTATTTGACGCATTC 58.472 43.478 0.00 0.00 0.00 2.67
860 861 3.315191 CCGGATTTCCTATTTGACGCATT 59.685 43.478 0.00 0.00 0.00 3.56
861 862 2.878406 CCGGATTTCCTATTTGACGCAT 59.122 45.455 0.00 0.00 0.00 4.73
864 865 3.131396 CTCCCGGATTTCCTATTTGACG 58.869 50.000 0.73 0.00 0.00 4.35
866 867 3.778075 TGTCTCCCGGATTTCCTATTTGA 59.222 43.478 0.73 0.00 0.00 2.69
868 869 4.385310 CCTTGTCTCCCGGATTTCCTATTT 60.385 45.833 0.73 0.00 0.00 1.40
869 870 3.136626 CCTTGTCTCCCGGATTTCCTATT 59.863 47.826 0.73 0.00 0.00 1.73
870 871 2.706190 CCTTGTCTCCCGGATTTCCTAT 59.294 50.000 0.73 0.00 0.00 2.57
871 872 2.116238 CCTTGTCTCCCGGATTTCCTA 58.884 52.381 0.73 0.00 0.00 2.94
872 873 0.912486 CCTTGTCTCCCGGATTTCCT 59.088 55.000 0.73 0.00 0.00 3.36
873 874 0.107165 CCCTTGTCTCCCGGATTTCC 60.107 60.000 0.73 0.00 0.00 3.13
875 876 0.845102 ACCCCTTGTCTCCCGGATTT 60.845 55.000 0.73 0.00 0.00 2.17
876 877 0.845102 AACCCCTTGTCTCCCGGATT 60.845 55.000 0.73 0.00 0.00 3.01
877 878 1.229853 AACCCCTTGTCTCCCGGAT 60.230 57.895 0.73 0.00 0.00 4.18
878 879 2.206036 AACCCCTTGTCTCCCGGA 59.794 61.111 0.73 0.00 0.00 5.14
879 880 2.351276 CAACCCCTTGTCTCCCGG 59.649 66.667 0.00 0.00 0.00 5.73
880 881 2.185310 CTCCAACCCCTTGTCTCCCG 62.185 65.000 0.00 0.00 0.00 5.14
881 882 0.840722 TCTCCAACCCCTTGTCTCCC 60.841 60.000 0.00 0.00 0.00 4.30
884 885 2.040412 GTGAATCTCCAACCCCTTGTCT 59.960 50.000 0.00 0.00 0.00 3.41
885 886 2.040412 AGTGAATCTCCAACCCCTTGTC 59.960 50.000 0.00 0.00 0.00 3.18
886 887 2.065799 AGTGAATCTCCAACCCCTTGT 58.934 47.619 0.00 0.00 0.00 3.16
887 888 2.821969 CAAGTGAATCTCCAACCCCTTG 59.178 50.000 0.00 0.00 0.00 3.61
888 889 2.225117 CCAAGTGAATCTCCAACCCCTT 60.225 50.000 0.00 0.00 0.00 3.95
889 890 1.355720 CCAAGTGAATCTCCAACCCCT 59.644 52.381 0.00 0.00 0.00 4.79
890 891 1.616994 CCCAAGTGAATCTCCAACCCC 60.617 57.143 0.00 0.00 0.00 4.95
892 893 1.177401 GCCCAAGTGAATCTCCAACC 58.823 55.000 0.00 0.00 0.00 3.77
893 894 1.177401 GGCCCAAGTGAATCTCCAAC 58.823 55.000 0.00 0.00 0.00 3.77
894 895 0.322456 CGGCCCAAGTGAATCTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
895 896 1.299648 CGGCCCAAGTGAATCTCCA 59.700 57.895 0.00 0.00 0.00 3.86
896 897 0.539986 TACGGCCCAAGTGAATCTCC 59.460 55.000 0.00 0.00 0.00 3.71
931 1012 4.463788 GGGGATGTTGGGGGCAGG 62.464 72.222 0.00 0.00 0.00 4.85
934 1015 1.076265 GTTAGGGGATGTTGGGGGC 60.076 63.158 0.00 0.00 0.00 5.80
1113 1196 3.819564 TTATCAGTACCTGAGCGCAAT 57.180 42.857 11.47 0.00 44.08 3.56
1130 1213 5.854010 TCGAGTAGAAGGCTGTTGATTAT 57.146 39.130 0.00 0.00 0.00 1.28
1135 1218 3.246619 GAGTTCGAGTAGAAGGCTGTTG 58.753 50.000 0.00 0.00 39.95 3.33
1138 1221 1.469308 ACGAGTTCGAGTAGAAGGCTG 59.531 52.381 8.72 0.00 43.02 4.85
1194 1277 2.111460 CGTTTGAACCCCGACCCA 59.889 61.111 0.00 0.00 0.00 4.51
1303 1386 5.500234 AGTGGTACGTATCACAACCTAGTA 58.500 41.667 34.00 0.00 39.75 1.82
1337 1420 2.026915 TCCACATTCCACCACAGATCAG 60.027 50.000 0.00 0.00 0.00 2.90
1369 1453 7.277098 GCATGTTGCATCAAAGATAATGTTCTT 59.723 33.333 0.75 0.00 44.26 2.52
1440 1524 2.378547 AGCAACAATCTGTTAGGGGGAA 59.621 45.455 0.00 0.00 38.77 3.97
1501 1585 1.390123 CAACAGTACGACCTGCAATCG 59.610 52.381 16.32 16.32 45.17 3.34
1556 1640 6.209589 TGCTTAAATCAGTAGTCACTCTCTGT 59.790 38.462 9.00 0.00 30.46 3.41
1779 1863 3.380479 TTCTGAACCTGTAGGAACGTG 57.620 47.619 4.64 0.00 38.94 4.49
1953 2037 3.605634 TGTGAAAGTACATGCGCCTATT 58.394 40.909 4.18 0.00 0.00 1.73
1988 2072 1.480789 TACTCTGCATGCTTCCGGTA 58.519 50.000 20.33 11.45 0.00 4.02
2092 2176 3.550842 GCACGCTTCCTTGAAGTTTGATT 60.551 43.478 5.79 0.00 41.27 2.57
2470 2554 2.360852 CCCACCAGGAGCAGCTTG 60.361 66.667 0.00 0.00 38.24 4.01
2648 2732 4.405548 TGTCAACCACATCCATGAAATCA 58.594 39.130 0.00 0.00 0.00 2.57
2727 2811 6.389906 AGCCATTAAAAATAAGACACACAGC 58.610 36.000 0.00 0.00 0.00 4.40
2812 2898 0.940126 GATCATGCTTGTAGTGGGCG 59.060 55.000 0.00 0.00 0.00 6.13
2843 2929 3.795101 GTGAATGCTTGCATGTAATCTGC 59.205 43.478 8.98 0.00 40.10 4.26
3054 3145 5.470368 ACATACATCGGGATACAATTCGAG 58.530 41.667 0.00 0.00 35.07 4.04
3064 3155 3.093057 GCTAGAGGACATACATCGGGAT 58.907 50.000 0.00 0.00 34.26 3.85
3091 3182 0.035317 ATGTGCTCCAGTTTCGCTCA 59.965 50.000 0.00 0.00 0.00 4.26
3174 3265 4.270325 GCAGGTTAAGATTGTATCGGACAC 59.730 45.833 0.00 0.00 37.96 3.67
3571 3662 0.827368 GGCTGGAGAGATCCTTCGTT 59.173 55.000 0.00 0.00 0.00 3.85
3728 3822 4.943705 AGTCAACAAAACTGTCTGTCATGT 59.056 37.500 0.00 0.00 0.00 3.21
3732 3826 5.803020 AGAAGTCAACAAAACTGTCTGTC 57.197 39.130 0.00 0.00 0.00 3.51
3733 3827 5.940470 AGAAGAAGTCAACAAAACTGTCTGT 59.060 36.000 0.00 0.00 0.00 3.41
3734 3828 6.428385 AGAAGAAGTCAACAAAACTGTCTG 57.572 37.500 0.00 0.00 0.00 3.51
3735 3829 7.454260 AAAGAAGAAGTCAACAAAACTGTCT 57.546 32.000 0.00 0.00 0.00 3.41
3858 3952 0.761187 TCAGGCTCTTGTGCTTCAGT 59.239 50.000 0.00 0.00 0.00 3.41
3894 3988 3.014304 TCACGACCCTAAGATGTAGCT 57.986 47.619 0.00 0.00 0.00 3.32
3899 3993 4.615949 CAAGAGATCACGACCCTAAGATG 58.384 47.826 0.00 0.00 0.00 2.90
3910 4004 3.182182 TCGAAATCAGCAAGAGATCACG 58.818 45.455 0.00 0.00 0.00 4.35
3946 4040 6.146021 GGTCATTAAAAATCACAAGTTGGCAG 59.854 38.462 7.96 0.00 0.00 4.85
3980 4074 5.508153 CGTAGCATCTTACTACAGGCAGAAT 60.508 44.000 0.00 0.00 40.03 2.40
4225 4319 1.960689 TGAAGCAAACTTTAGGGGCAC 59.039 47.619 0.00 0.00 35.82 5.01
4304 4399 0.956633 ACTGGATTGTGTTGCTGCAG 59.043 50.000 10.11 10.11 34.85 4.41
4339 4434 5.386060 ACCACTTGATATCTACGAGGATGA 58.614 41.667 3.98 0.00 0.00 2.92
4340 4435 5.713792 ACCACTTGATATCTACGAGGATG 57.286 43.478 3.98 0.00 0.00 3.51
4341 4436 8.958506 GTATTACCACTTGATATCTACGAGGAT 58.041 37.037 3.98 0.00 0.00 3.24
4409 4541 4.079970 TGTTGTGTACAGTTTTTGGACCA 58.920 39.130 0.00 0.00 40.16 4.02
4451 4584 3.624861 CCTTTGATCACTGGACTGTATGC 59.375 47.826 7.25 0.00 0.00 3.14
4520 4653 0.804989 GGGGCAATGTCTCTTGAACG 59.195 55.000 0.00 0.00 0.00 3.95
4550 4683 2.040278 TCTTGATGTCCCTGTTTGGAGG 59.960 50.000 0.00 0.00 38.35 4.30
4635 4775 4.373116 GGCGAAGACTGGTGCCGA 62.373 66.667 0.00 0.00 37.81 5.54
4643 4783 0.108585 ACACCACATTGGCGAAGACT 59.891 50.000 0.00 0.00 42.67 3.24
4654 4794 4.322198 CGTAGTAGGGTTTGTACACCACAT 60.322 45.833 0.00 0.00 38.79 3.21
4692 4832 3.915437 TCCGATTTTGGTTTGAAGAGC 57.085 42.857 0.00 0.00 0.00 4.09
4742 4882 4.062293 TCAACAGTTACATGAGTTTCCCG 58.938 43.478 0.00 0.00 0.00 5.14
4768 4908 1.134694 GTGATCCCAGCGAAAACGC 59.865 57.895 6.50 6.50 0.00 4.84
4789 4929 0.880278 GTTCGTGCTCAGCAAGACCA 60.880 55.000 15.47 0.00 45.42 4.02
4923 5063 7.255491 TGCTCATGCATTTTATTCTACTCTG 57.745 36.000 0.00 0.00 45.31 3.35
4953 5093 8.956014 CATGCACAATTATTTTGTTTTGTTTCC 58.044 29.630 0.00 0.00 30.23 3.13
4957 5097 6.911511 GTGCATGCACAATTATTTTGTTTTGT 59.088 30.769 39.12 0.00 45.53 2.83
4958 5098 7.310361 GTGCATGCACAATTATTTTGTTTTG 57.690 32.000 39.12 0.00 45.53 2.44
5015 5155 1.767759 AGCTTCCTGCAAGTTGTGTT 58.232 45.000 4.48 0.00 45.94 3.32
5026 5166 7.039313 ACAAACCTTACTTTAAAGCTTCCTG 57.961 36.000 15.24 6.89 0.00 3.86
5042 5182 7.907563 CGTTTAAATTTTGCATTGACAAACCTT 59.092 29.630 0.00 5.69 39.18 3.50
5049 5189 6.644775 TGCTTCGTTTAAATTTTGCATTGAC 58.355 32.000 0.00 0.00 0.00 3.18
5129 5269 5.091431 GCAATTCTCATAACACAGCTCAAC 58.909 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.