Multiple sequence alignment - TraesCS7B01G211200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G211200 chr7B 100.000 2681 0 0 484 3164 385922370 385919690 0.000000e+00 4951.0
1 TraesCS7B01G211200 chr7B 100.000 156 0 0 1 156 385922853 385922698 3.990000e-74 289.0
2 TraesCS7B01G211200 chr7B 85.377 212 31 0 2953 3164 733722294 733722505 1.480000e-53 220.0
3 TraesCS7B01G211200 chr7B 76.190 252 38 14 2919 3154 627616313 627616558 2.580000e-21 113.0
4 TraesCS7B01G211200 chr7D 95.466 2051 80 10 904 2945 390183605 390181559 0.000000e+00 3260.0
5 TraesCS7B01G211200 chr7D 96.368 413 14 1 484 895 390183989 390183577 0.000000e+00 678.0
6 TraesCS7B01G211200 chr7D 94.558 147 6 2 9 155 390184183 390184039 3.180000e-55 226.0
7 TraesCS7B01G211200 chr7D 84.862 218 32 1 2948 3164 628536616 628536399 5.310000e-53 219.0
8 TraesCS7B01G211200 chr7A 96.222 1191 39 5 1259 2447 441587614 441586428 0.000000e+00 1945.0
9 TraesCS7B01G211200 chr7A 86.026 687 50 18 2522 3164 441571956 441571272 0.000000e+00 695.0
10 TraesCS7B01G211200 chr7A 94.595 74 4 0 2451 2524 441584359 441584286 7.170000e-22 115.0
11 TraesCS7B01G211200 chr7A 95.833 48 2 0 2769 2816 50632432 50632479 9.410000e-11 78.7
12 TraesCS7B01G211200 chr5B 84.791 263 37 2 2905 3164 13097158 13096896 8.700000e-66 261.0
13 TraesCS7B01G211200 chr5B 87.719 57 7 0 2769 2825 684627194 684627138 2.040000e-07 67.6
14 TraesCS7B01G211200 chr1B 86.854 213 27 1 2946 3158 563440848 563441059 1.470000e-58 237.0
15 TraesCS7B01G211200 chr4B 87.019 208 26 1 2948 3154 57805590 57805383 1.900000e-57 233.0
16 TraesCS7B01G211200 chr4B 95.833 48 2 0 2769 2816 139139509 139139462 9.410000e-11 78.7
17 TraesCS7B01G211200 chr2A 90.643 171 16 0 2994 3164 568841618 568841448 8.830000e-56 228.0
18 TraesCS7B01G211200 chr2B 85.646 209 30 0 2951 3159 763335514 763335722 1.480000e-53 220.0
19 TraesCS7B01G211200 chr4D 85.577 208 25 5 2959 3164 500547722 500547926 2.470000e-51 213.0
20 TraesCS7B01G211200 chr4D 89.474 57 6 0 2769 2825 308373934 308373878 4.380000e-09 73.1
21 TraesCS7B01G211200 chr4A 95.833 48 2 0 2769 2816 596845787 596845740 9.410000e-11 78.7
22 TraesCS7B01G211200 chr4A 93.878 49 2 1 2769 2816 16208750 16208702 4.380000e-09 73.1
23 TraesCS7B01G211200 chr5A 93.750 48 3 0 2769 2816 573617903 573617856 4.380000e-09 73.1
24 TraesCS7B01G211200 chr5D 89.796 49 5 0 2899 2947 84825834 84825882 2.630000e-06 63.9
25 TraesCS7B01G211200 chr6B 100.000 28 0 0 2905 2932 46894525 46894552 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G211200 chr7B 385919690 385922853 3163 True 2620 4951 100.0000 1 3164 2 chr7B.!!$R1 3163
1 TraesCS7B01G211200 chr7D 390181559 390184183 2624 True 1388 3260 95.4640 9 2945 3 chr7D.!!$R2 2936
2 TraesCS7B01G211200 chr7A 441584286 441587614 3328 True 1030 1945 95.4085 1259 2524 2 chr7A.!!$R2 1265
3 TraesCS7B01G211200 chr7A 441571272 441571956 684 True 695 695 86.0260 2522 3164 1 chr7A.!!$R1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 585 0.179094 ATTTGACGCGCCGGAATAGA 60.179 50.0 5.05 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2298 0.250295 TTTCGGGGCAGAGACACTTG 60.25 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.166531 ACCGCAAGACCAACTTCAGC 61.167 55.000 0.00 0.00 43.02 4.26
25 26 1.871080 AGACCAACTTCAGCTTCACG 58.129 50.000 0.00 0.00 0.00 4.35
28 29 1.439365 CAACTTCAGCTTCACGCGC 60.439 57.895 5.73 0.00 45.59 6.86
37 38 3.964221 CTTCACGCGCTGCCGTCTA 62.964 63.158 5.73 3.11 39.83 2.59
52 53 6.363577 TGCCGTCTAAATTCATCTTTCATC 57.636 37.500 0.00 0.00 0.00 2.92
69 70 7.574607 TCTTTCATCTAGAGAATTTAACCCCC 58.425 38.462 0.00 0.00 0.00 5.40
575 576 2.082366 CCAGCAACATTTGACGCGC 61.082 57.895 5.73 0.00 0.00 6.86
582 583 0.741574 ACATTTGACGCGCCGGAATA 60.742 50.000 5.05 0.00 0.00 1.75
584 585 0.179094 ATTTGACGCGCCGGAATAGA 60.179 50.000 5.05 0.00 0.00 1.98
666 667 4.252878 TCTTCATTGTTTATCGCTGCTGA 58.747 39.130 0.00 0.00 0.00 4.26
718 719 7.637631 ATGGAAAAATAAGAAGAAGAGAGGC 57.362 36.000 0.00 0.00 0.00 4.70
804 805 4.213270 TGATTGAATCAGTTTCGTGTCCAC 59.787 41.667 3.29 0.00 37.13 4.02
850 851 0.887836 GGGGTTTCTTCGGTGTGGAC 60.888 60.000 0.00 0.00 0.00 4.02
858 859 0.462937 TTCGGTGTGGACCAAGTGTG 60.463 55.000 0.00 0.00 43.33 3.82
870 871 1.308998 CAAGTGTGGGTCCTGTTGAC 58.691 55.000 0.00 0.00 43.67 3.18
880 881 3.071874 GTCCTGTTGACCCATTCATGA 57.928 47.619 0.00 0.00 38.09 3.07
881 882 3.624777 GTCCTGTTGACCCATTCATGAT 58.375 45.455 0.00 0.00 38.09 2.45
882 883 4.019174 GTCCTGTTGACCCATTCATGATT 58.981 43.478 0.00 0.00 38.09 2.57
883 884 4.096984 GTCCTGTTGACCCATTCATGATTC 59.903 45.833 0.00 0.00 38.09 2.52
884 885 4.018490 CCTGTTGACCCATTCATGATTCA 58.982 43.478 0.00 0.00 32.84 2.57
885 886 4.142315 CCTGTTGACCCATTCATGATTCAC 60.142 45.833 0.00 0.00 32.84 3.18
886 887 3.439825 TGTTGACCCATTCATGATTCACG 59.560 43.478 0.00 0.00 32.84 4.35
887 888 3.625649 TGACCCATTCATGATTCACGA 57.374 42.857 0.00 0.00 0.00 4.35
888 889 4.155063 TGACCCATTCATGATTCACGAT 57.845 40.909 0.00 0.00 0.00 3.73
889 890 4.525996 TGACCCATTCATGATTCACGATT 58.474 39.130 0.00 0.00 0.00 3.34
890 891 4.949238 TGACCCATTCATGATTCACGATTT 59.051 37.500 0.00 0.00 0.00 2.17
891 892 5.418524 TGACCCATTCATGATTCACGATTTT 59.581 36.000 0.00 0.00 0.00 1.82
892 893 6.071447 TGACCCATTCATGATTCACGATTTTT 60.071 34.615 0.00 0.00 0.00 1.94
959 961 6.620678 TCTATTTTACTGCTGGAATTTGCAC 58.379 36.000 0.00 0.00 35.20 4.57
992 995 1.484653 TGGATCCGTATGGGTGTGAAG 59.515 52.381 7.39 0.00 37.00 3.02
996 999 1.280710 TCCGTATGGGTGTGAAGCAAT 59.719 47.619 0.00 0.00 37.00 3.56
1018 1021 0.381801 GATGAATGTGCGGCCGATTT 59.618 50.000 33.48 15.76 0.00 2.17
1019 1022 1.601903 GATGAATGTGCGGCCGATTTA 59.398 47.619 33.48 17.08 0.00 1.40
1111 1117 1.024579 GGCATCAACCACCGAATCGT 61.025 55.000 0.82 0.00 0.00 3.73
1128 1134 0.792640 CGTCATGCACAACTCAGACC 59.207 55.000 0.00 0.00 0.00 3.85
1299 1305 8.783660 AGGAGTACATATCAGTTTATCTGGAA 57.216 34.615 0.00 0.00 43.76 3.53
1339 1345 1.003118 AGGCTTTGGCATTCGTAGACA 59.997 47.619 0.00 0.00 40.87 3.41
1431 1437 2.920490 CAAGTCTAGCAGCTTCGAAGAC 59.080 50.000 28.95 18.66 37.44 3.01
2179 2185 6.228258 TCCGTTTAGAACATGTCTAAGCTTT 58.772 36.000 3.20 0.00 46.99 3.51
2186 2192 4.851639 ACATGTCTAAGCTTTGGAGGAT 57.148 40.909 3.20 0.00 0.00 3.24
2269 2275 4.098960 GGTGATCGTAATTCCACCAGTAGA 59.901 45.833 0.00 0.00 46.13 2.59
2292 2298 2.907458 ATTATGCTTATCCAGGCCCC 57.093 50.000 0.00 0.00 0.00 5.80
2309 2315 2.583441 CCAAGTGTCTCTGCCCCGA 61.583 63.158 0.00 0.00 0.00 5.14
2362 2368 7.973944 GTCTTTTGGTTGAAACTGTTAGTGATT 59.026 33.333 0.00 0.00 0.00 2.57
2391 2397 4.439974 CCCATGCATGTTTAAGCGTGTAAT 60.440 41.667 24.58 5.09 44.23 1.89
2418 2424 9.847224 TGGAATATGTAGGTCTCTTTTAATTCC 57.153 33.333 0.00 0.00 39.26 3.01
2421 2427 5.155278 TGTAGGTCTCTTTTAATTCCGCA 57.845 39.130 0.00 0.00 0.00 5.69
2432 2438 8.275015 TCTTTTAATTCCGCATATCTTGTCAA 57.725 30.769 0.00 0.00 0.00 3.18
2465 4536 2.381752 ACTACTTTGGCCCTTTGCTT 57.618 45.000 0.00 0.00 40.92 3.91
2612 4683 5.189736 AGTTCCTATTGTCATCTGCAGGTTA 59.810 40.000 15.13 0.00 0.00 2.85
2613 4684 5.692115 TCCTATTGTCATCTGCAGGTTAA 57.308 39.130 15.13 2.03 0.00 2.01
2847 4936 5.651530 TCAAACGTCATCTCTTCCTATGAC 58.348 41.667 5.56 5.56 45.52 3.06
2860 4949 9.303116 TCTCTTCCTATGACATTTCTATCCTAC 57.697 37.037 0.00 0.00 0.00 3.18
2932 5021 6.680378 GCATCTATAAACGGACTTGGCAAATT 60.680 38.462 0.00 0.00 0.00 1.82
2945 5034 1.824852 GGCAAATTCGACCCCTCAAAT 59.175 47.619 0.00 0.00 0.00 2.32
2948 5037 1.094785 AATTCGACCCCTCAAATGCG 58.905 50.000 0.00 0.00 0.00 4.73
2967 5081 4.295119 GACAGTGGCCGGTCACGT 62.295 66.667 32.07 29.87 42.10 4.49
2970 5084 3.231736 AGTGGCCGGTCACGTCTT 61.232 61.111 32.07 13.47 42.10 3.01
2976 5090 1.929169 GGCCGGTCACGTCTTAAATAC 59.071 52.381 0.00 0.00 38.78 1.89
3010 5124 6.777580 ACAACCAGACACCTCAAATTAGAAAT 59.222 34.615 0.00 0.00 0.00 2.17
3012 5126 6.784031 ACCAGACACCTCAAATTAGAAATCT 58.216 36.000 0.00 0.00 0.00 2.40
3055 5169 4.724036 GCAACGTGAAACCTAATCTAAGCG 60.724 45.833 0.00 0.00 0.00 4.68
3056 5170 3.518590 ACGTGAAACCTAATCTAAGCGG 58.481 45.455 0.00 0.00 0.00 5.52
3073 5187 1.078143 GGAGCTTGCCTGATTCCGT 60.078 57.895 0.00 0.00 0.00 4.69
3074 5188 0.678048 GGAGCTTGCCTGATTCCGTT 60.678 55.000 0.00 0.00 0.00 4.44
3079 5193 1.523154 TTGCCTGATTCCGTTGTGCC 61.523 55.000 0.00 0.00 0.00 5.01
3121 5235 1.127567 TCCCCAGAGTGTTGGTCCAG 61.128 60.000 0.00 0.00 36.45 3.86
3128 5242 1.046472 AGTGTTGGTCCAGTCACCGA 61.046 55.000 19.15 0.00 39.62 4.69
3129 5243 0.034896 GTGTTGGTCCAGTCACCGAT 59.965 55.000 14.56 0.00 39.62 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.166531 GCTGAAGTTGGTCTTGCGGT 61.167 55.000 0.00 0.00 36.40 5.68
1 2 0.886490 AGCTGAAGTTGGTCTTGCGG 60.886 55.000 0.00 0.00 36.40 5.69
2 3 0.947244 AAGCTGAAGTTGGTCTTGCG 59.053 50.000 0.00 0.00 36.40 4.85
4 5 2.032549 CGTGAAGCTGAAGTTGGTCTTG 60.033 50.000 0.00 0.00 36.40 3.02
5 6 2.213499 CGTGAAGCTGAAGTTGGTCTT 58.787 47.619 0.00 0.00 39.32 3.01
6 7 1.871080 CGTGAAGCTGAAGTTGGTCT 58.129 50.000 0.00 0.00 0.00 3.85
19 20 3.964221 TAGACGGCAGCGCGTGAAG 62.964 63.158 8.43 5.29 0.00 3.02
25 26 0.657840 ATGAATTTAGACGGCAGCGC 59.342 50.000 0.00 0.00 0.00 5.92
28 29 5.801350 TGAAAGATGAATTTAGACGGCAG 57.199 39.130 0.00 0.00 0.00 4.85
52 53 5.959583 ACTCTGGGGGTTAAATTCTCTAG 57.040 43.478 0.00 0.00 0.00 2.43
491 492 2.442126 GGGGTTAGGGTTATGGAGAAGG 59.558 54.545 0.00 0.00 0.00 3.46
495 496 1.901648 TGGGGGTTAGGGTTATGGAG 58.098 55.000 0.00 0.00 0.00 3.86
496 497 2.140224 CATGGGGGTTAGGGTTATGGA 58.860 52.381 0.00 0.00 0.00 3.41
500 501 2.424793 GATCCATGGGGGTTAGGGTTA 58.575 52.381 13.02 0.00 38.11 2.85
575 576 1.825191 TCCCGTCCGTCTATTCCGG 60.825 63.158 0.00 0.00 46.83 5.14
666 667 4.253685 CAAATGTTACCACGAGGATCAGT 58.746 43.478 5.68 0.00 38.69 3.41
718 719 5.204706 AGGCAACATAGGTACACCACCAG 62.205 52.174 0.38 0.00 46.15 4.00
824 825 1.633945 ACCGAAGAAACCCCAATAGCT 59.366 47.619 0.00 0.00 0.00 3.32
850 851 0.182537 TCAACAGGACCCACACTTGG 59.817 55.000 0.00 0.00 43.50 3.61
889 890 9.656040 CATGAATGGGTCATAGAAAATGAAAAA 57.344 29.630 0.00 0.00 45.69 1.94
890 891 9.033711 TCATGAATGGGTCATAGAAAATGAAAA 57.966 29.630 0.00 0.00 45.69 2.29
891 892 8.592529 TCATGAATGGGTCATAGAAAATGAAA 57.407 30.769 0.00 0.00 45.69 2.69
892 893 8.771521 ATCATGAATGGGTCATAGAAAATGAA 57.228 30.769 0.00 0.00 45.69 2.57
893 894 8.771521 AATCATGAATGGGTCATAGAAAATGA 57.228 30.769 0.00 0.00 45.69 2.57
894 895 8.635328 TGAATCATGAATGGGTCATAGAAAATG 58.365 33.333 0.00 0.00 45.69 2.32
895 896 8.636213 GTGAATCATGAATGGGTCATAGAAAAT 58.364 33.333 0.00 0.00 45.69 1.82
896 897 7.201723 CGTGAATCATGAATGGGTCATAGAAAA 60.202 37.037 0.00 0.00 45.69 2.29
897 898 6.260714 CGTGAATCATGAATGGGTCATAGAAA 59.739 38.462 0.00 0.00 45.69 2.52
898 899 5.759763 CGTGAATCATGAATGGGTCATAGAA 59.240 40.000 0.00 0.00 45.69 2.10
899 900 5.070313 TCGTGAATCATGAATGGGTCATAGA 59.930 40.000 2.14 1.28 45.69 1.98
900 901 5.299949 TCGTGAATCATGAATGGGTCATAG 58.700 41.667 2.14 0.00 45.69 2.23
901 902 5.289083 TCGTGAATCATGAATGGGTCATA 57.711 39.130 2.14 0.00 45.69 2.15
903 904 3.625649 TCGTGAATCATGAATGGGTCA 57.374 42.857 2.14 0.00 41.67 4.02
904 905 5.505173 AAATCGTGAATCATGAATGGGTC 57.495 39.130 9.41 0.00 32.88 4.46
905 906 5.920193 AAAATCGTGAATCATGAATGGGT 57.080 34.783 9.41 0.00 32.88 4.51
931 932 9.154847 GCAAATTCCAGCAGTAAAATAGAAAAT 57.845 29.630 0.00 0.00 0.00 1.82
934 936 7.039784 AGTGCAAATTCCAGCAGTAAAATAGAA 60.040 33.333 6.15 0.00 42.25 2.10
936 938 6.624423 AGTGCAAATTCCAGCAGTAAAATAG 58.376 36.000 6.15 0.00 42.25 1.73
942 944 4.935352 AAAAGTGCAAATTCCAGCAGTA 57.065 36.364 7.87 0.00 43.18 2.74
943 945 3.825143 AAAAGTGCAAATTCCAGCAGT 57.175 38.095 0.00 2.02 45.72 4.40
944 946 5.291971 ACTAAAAAGTGCAAATTCCAGCAG 58.708 37.500 0.00 0.00 42.14 4.24
946 948 5.523552 ACAACTAAAAAGTGCAAATTCCAGC 59.476 36.000 0.00 0.00 0.00 4.85
959 961 7.041372 CCCATACGGATCCATACAACTAAAAAG 60.041 40.741 13.41 0.00 0.00 2.27
992 995 1.862815 GCCGCACATTCATCTCATTGC 60.863 52.381 0.00 0.00 0.00 3.56
996 999 1.815003 CGGCCGCACATTCATCTCA 60.815 57.895 14.67 0.00 0.00 3.27
1095 1101 2.279741 CATGACGATTCGGTGGTTGAT 58.720 47.619 11.29 0.00 0.00 2.57
1111 1117 0.392706 ACGGTCTGAGTTGTGCATGA 59.607 50.000 0.00 0.00 0.00 3.07
1221 1227 2.901249 ACAATAACCCAGTCGAATCCG 58.099 47.619 0.00 0.00 37.07 4.18
1339 1345 4.285517 AGTGACTTGGTTGATCAGTCTCAT 59.714 41.667 11.87 0.00 0.00 2.90
2158 2164 7.361286 CCTCCAAAGCTTAGACATGTTCTAAAC 60.361 40.741 0.00 5.28 44.66 2.01
2171 2177 5.189180 ACTTGCTTATCCTCCAAAGCTTAG 58.811 41.667 0.00 0.00 46.57 2.18
2179 2185 3.582647 TGACTGAACTTGCTTATCCTCCA 59.417 43.478 0.00 0.00 0.00 3.86
2186 2192 3.751479 TCTGCTGACTGAACTTGCTTA 57.249 42.857 0.00 0.00 0.00 3.09
2269 2275 4.263949 GGGGCCTGGATAAGCATAATACTT 60.264 45.833 0.84 0.00 0.00 2.24
2292 2298 0.250295 TTTCGGGGCAGAGACACTTG 60.250 55.000 0.00 0.00 0.00 3.16
2329 2335 7.213678 ACAGTTTCAACCAAAAGACAAAAGAA 58.786 30.769 0.00 0.00 0.00 2.52
2418 2424 6.033831 GTCCAAAACATTTGACAAGATATGCG 59.966 38.462 4.47 0.00 0.00 4.73
2432 2438 6.239204 GGCCAAAGTAGTTAGTCCAAAACATT 60.239 38.462 0.00 0.00 0.00 2.71
2465 4536 1.533625 CTCCCCAAGTTGCGAATCAA 58.466 50.000 0.00 0.00 0.00 2.57
2733 4804 2.136863 TCCTACAAACCAAAGGTCCCA 58.863 47.619 0.00 0.00 33.12 4.37
2735 4806 2.551032 CGTTCCTACAAACCAAAGGTCC 59.449 50.000 0.00 0.00 33.12 4.46
2816 4887 7.878127 AGGAAGAGATGACGTTTGATAGAAAAA 59.122 33.333 0.00 0.00 0.00 1.94
2817 4888 7.386851 AGGAAGAGATGACGTTTGATAGAAAA 58.613 34.615 0.00 0.00 0.00 2.29
2847 4936 6.346096 TCCTTTGGTTCGTAGGATAGAAATG 58.654 40.000 0.00 0.00 33.23 2.32
2860 4949 2.423538 CCTTTAGGCATCCTTTGGTTCG 59.576 50.000 0.00 0.00 34.61 3.95
2917 5006 0.872388 GTCGAATTTGCCAAGTCCGT 59.128 50.000 0.00 0.00 0.00 4.69
2932 5021 2.435938 GCGCATTTGAGGGGTCGA 60.436 61.111 0.30 0.00 0.00 4.20
2970 5084 9.431887 GTGTCTGGTTGTAGAATCAAGTATTTA 57.568 33.333 0.00 0.00 0.00 1.40
2976 5090 4.899502 AGGTGTCTGGTTGTAGAATCAAG 58.100 43.478 0.00 0.00 0.00 3.02
3018 5132 8.126074 GGTTTCACGTTGCATGTAATAATATGA 58.874 33.333 0.00 0.00 0.00 2.15
3028 5142 4.072131 AGATTAGGTTTCACGTTGCATGT 58.928 39.130 0.00 0.00 0.00 3.21
3029 5143 4.685169 AGATTAGGTTTCACGTTGCATG 57.315 40.909 0.00 0.00 0.00 4.06
3036 5150 3.777478 TCCGCTTAGATTAGGTTTCACG 58.223 45.455 0.00 0.00 0.00 4.35
3055 5169 0.678048 AACGGAATCAGGCAAGCTCC 60.678 55.000 0.00 0.00 0.00 4.70
3056 5170 0.449388 CAACGGAATCAGGCAAGCTC 59.551 55.000 0.00 0.00 0.00 4.09
3061 5175 1.971167 GGCACAACGGAATCAGGCA 60.971 57.895 0.00 0.00 0.00 4.75
3064 5178 0.452987 CATGGGCACAACGGAATCAG 59.547 55.000 0.00 0.00 0.00 2.90
3067 5181 0.965363 GGACATGGGCACAACGGAAT 60.965 55.000 0.00 0.00 0.00 3.01
3099 5213 2.046892 CCAACACTCTGGGGAGCG 60.047 66.667 0.00 0.00 42.98 5.03
3106 5220 1.541233 GGTGACTGGACCAACACTCTG 60.541 57.143 22.38 2.99 35.88 3.35
3112 5226 2.618053 CTTATCGGTGACTGGACCAAC 58.382 52.381 0.00 0.00 35.50 3.77
3128 5242 5.081032 GTCCCATGCTCTACTCTACCTTAT 58.919 45.833 0.00 0.00 0.00 1.73
3129 5243 4.079385 TGTCCCATGCTCTACTCTACCTTA 60.079 45.833 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.