Multiple sequence alignment - TraesCS7B01G210400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G210400 chr7B 100.000 4646 0 0 1 4646 384186436 384191081 0.000000e+00 8580.0
1 TraesCS7B01G210400 chr7B 80.579 242 35 7 5 238 523736022 523736259 4.780000e-40 176.0
2 TraesCS7B01G210400 chr7B 88.235 85 10 0 155 239 693039342 693039426 8.220000e-18 102.0
3 TraesCS7B01G210400 chr7B 94.444 36 1 1 547 581 384186914 384186949 2.000000e-03 54.7
4 TraesCS7B01G210400 chr7B 94.444 36 1 1 479 514 384186982 384187016 2.000000e-03 54.7
5 TraesCS7B01G210400 chr7D 95.186 3781 116 23 420 4160 388989394 388993148 0.000000e+00 5914.0
6 TraesCS7B01G210400 chr7D 94.444 504 13 4 4158 4646 388993185 388993688 0.000000e+00 761.0
7 TraesCS7B01G210400 chr7D 92.500 40 2 1 479 518 388989499 388989537 6.490000e-04 56.5
8 TraesCS7B01G210400 chr7A 95.764 3423 94 11 770 4160 439625976 439629379 0.000000e+00 5470.0
9 TraesCS7B01G210400 chr7A 96.951 492 12 2 4158 4646 439629416 439629907 0.000000e+00 822.0
10 TraesCS7B01G210400 chr7A 85.449 323 22 8 374 693 439625258 439625558 3.490000e-81 313.0
11 TraesCS7B01G210400 chr7A 95.000 40 1 1 479 518 439625410 439625448 1.400000e-05 62.1
12 TraesCS7B01G210400 chr1B 87.854 247 23 2 1 240 512786049 512786295 2.740000e-72 283.0
13 TraesCS7B01G210400 chr6B 84.615 247 31 3 1 240 720103735 720103489 6.010000e-59 239.0
14 TraesCS7B01G210400 chr6B 81.301 246 37 6 1 238 136801504 136801748 1.710000e-44 191.0
15 TraesCS7B01G210400 chr6B 81.301 246 37 6 1 238 230628648 230628892 1.710000e-44 191.0
16 TraesCS7B01G210400 chr2D 84.064 251 26 8 1 240 567570451 567570204 3.620000e-56 230.0
17 TraesCS7B01G210400 chr1D 81.633 245 38 2 1 238 147882719 147882475 3.670000e-46 196.0
18 TraesCS7B01G210400 chr1D 81.048 248 34 10 1 238 102827929 102828173 7.940000e-43 185.0
19 TraesCS7B01G210400 chr4B 81.301 246 37 6 1 238 4208161 4208405 1.710000e-44 191.0
20 TraesCS7B01G210400 chr4B 79.352 247 41 5 1 238 32246703 32246948 1.030000e-36 165.0
21 TraesCS7B01G210400 chr4D 80.081 246 38 6 1 238 19672806 19673048 6.180000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G210400 chr7B 384186436 384191081 4645 False 8580.000000 8580 100.000000 1 4646 1 chr7B.!!$F1 4645
1 TraesCS7B01G210400 chr7D 388989394 388993688 4294 False 2243.833333 5914 94.043333 420 4646 3 chr7D.!!$F1 4226
2 TraesCS7B01G210400 chr7A 439625258 439629907 4649 False 1666.775000 5470 93.291000 374 4646 4 chr7A.!!$F1 4272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 509 0.105709 TGGGGATGCTCGTCTGGATA 60.106 55.0 0.0 0.0 0.00 2.59 F
1014 1365 0.030504 CGCGAATGCCAATGCCAATA 59.969 50.0 0.0 0.0 38.08 1.90 F
2120 2472 0.708209 AGGAAATGGGGGTTGGGTAC 59.292 55.0 0.0 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2506 0.034896 GAAGTTCTCCCAGTTCGCCA 59.965 55.0 0.0 0.0 0.0 5.69 R
2874 3257 1.381867 ACATCCCACTCAAATCCCCA 58.618 50.0 0.0 0.0 0.0 4.96 R
3754 4140 0.039618 GAAAGCATCCCCCAGGTGAA 59.960 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.437682 TCATTCCCGCCAGATATTTCTT 57.562 40.909 0.00 0.00 0.00 2.52
22 23 4.792068 TCATTCCCGCCAGATATTTCTTT 58.208 39.130 0.00 0.00 0.00 2.52
23 24 4.821805 TCATTCCCGCCAGATATTTCTTTC 59.178 41.667 0.00 0.00 0.00 2.62
24 25 3.924114 TCCCGCCAGATATTTCTTTCA 57.076 42.857 0.00 0.00 0.00 2.69
25 26 3.808728 TCCCGCCAGATATTTCTTTCAG 58.191 45.455 0.00 0.00 0.00 3.02
26 27 2.880890 CCCGCCAGATATTTCTTTCAGG 59.119 50.000 0.00 0.00 0.00 3.86
27 28 2.291741 CCGCCAGATATTTCTTTCAGGC 59.708 50.000 0.00 0.00 35.16 4.85
28 29 2.945008 CGCCAGATATTTCTTTCAGGCA 59.055 45.455 11.17 0.00 37.23 4.75
29 30 3.378112 CGCCAGATATTTCTTTCAGGCAA 59.622 43.478 11.17 0.00 37.23 4.52
30 31 4.497006 CGCCAGATATTTCTTTCAGGCAAG 60.497 45.833 11.17 0.00 37.23 4.01
31 32 4.641989 GCCAGATATTTCTTTCAGGCAAGA 59.358 41.667 7.19 0.00 37.31 3.02
32 33 5.301298 GCCAGATATTTCTTTCAGGCAAGAT 59.699 40.000 7.19 0.00 37.31 2.40
33 34 6.183360 GCCAGATATTTCTTTCAGGCAAGATT 60.183 38.462 7.19 0.00 37.31 2.40
34 35 7.632245 GCCAGATATTTCTTTCAGGCAAGATTT 60.632 37.037 7.19 0.00 37.31 2.17
35 36 7.705325 CCAGATATTTCTTTCAGGCAAGATTTG 59.295 37.037 0.00 0.00 32.69 2.32
36 37 8.464404 CAGATATTTCTTTCAGGCAAGATTTGA 58.536 33.333 0.00 0.00 32.69 2.69
37 38 9.198475 AGATATTTCTTTCAGGCAAGATTTGAT 57.802 29.630 0.00 0.00 32.69 2.57
38 39 9.813446 GATATTTCTTTCAGGCAAGATTTGATT 57.187 29.630 0.00 0.00 32.69 2.57
39 40 7.900782 ATTTCTTTCAGGCAAGATTTGATTG 57.099 32.000 0.00 0.00 32.69 2.67
40 41 5.395682 TCTTTCAGGCAAGATTTGATTGG 57.604 39.130 0.00 0.00 0.00 3.16
41 42 4.834496 TCTTTCAGGCAAGATTTGATTGGT 59.166 37.500 0.00 0.00 0.00 3.67
42 43 4.789012 TTCAGGCAAGATTTGATTGGTC 57.211 40.909 0.00 0.00 0.00 4.02
43 44 3.091545 TCAGGCAAGATTTGATTGGTCC 58.908 45.455 0.00 0.00 0.00 4.46
44 45 2.167075 CAGGCAAGATTTGATTGGTCCC 59.833 50.000 0.00 0.00 0.00 4.46
45 46 1.482182 GGCAAGATTTGATTGGTCCCC 59.518 52.381 0.00 0.00 0.00 4.81
46 47 2.178580 GCAAGATTTGATTGGTCCCCA 58.821 47.619 0.00 0.00 0.00 4.96
47 48 2.767960 GCAAGATTTGATTGGTCCCCAT 59.232 45.455 0.00 0.00 31.53 4.00
48 49 3.181472 GCAAGATTTGATTGGTCCCCATC 60.181 47.826 0.00 0.00 31.53 3.51
49 50 4.284178 CAAGATTTGATTGGTCCCCATCT 58.716 43.478 0.00 0.00 31.53 2.90
50 51 4.614967 AGATTTGATTGGTCCCCATCTT 57.385 40.909 0.00 0.00 31.53 2.40
51 52 5.732331 AGATTTGATTGGTCCCCATCTTA 57.268 39.130 0.00 0.00 31.53 2.10
52 53 6.285329 AGATTTGATTGGTCCCCATCTTAT 57.715 37.500 0.00 0.00 31.53 1.73
53 54 6.073314 AGATTTGATTGGTCCCCATCTTATG 58.927 40.000 0.00 0.00 31.53 1.90
54 55 4.879295 TTGATTGGTCCCCATCTTATGT 57.121 40.909 0.00 0.00 31.53 2.29
55 56 4.437682 TGATTGGTCCCCATCTTATGTC 57.562 45.455 0.00 0.00 31.53 3.06
56 57 3.785325 TGATTGGTCCCCATCTTATGTCA 59.215 43.478 0.00 0.00 31.53 3.58
57 58 4.416513 TGATTGGTCCCCATCTTATGTCAT 59.583 41.667 0.00 0.00 31.53 3.06
58 59 3.862877 TGGTCCCCATCTTATGTCATG 57.137 47.619 0.00 0.00 0.00 3.07
59 60 2.442878 TGGTCCCCATCTTATGTCATGG 59.557 50.000 0.00 0.00 39.58 3.66
60 61 2.508526 GTCCCCATCTTATGTCATGGC 58.491 52.381 0.00 0.00 38.67 4.40
61 62 2.134354 TCCCCATCTTATGTCATGGCA 58.866 47.619 0.60 0.60 38.67 4.92
62 63 2.513317 TCCCCATCTTATGTCATGGCAA 59.487 45.455 3.01 0.00 38.67 4.52
63 64 3.053019 TCCCCATCTTATGTCATGGCAAA 60.053 43.478 3.01 0.00 38.67 3.68
64 65 3.705579 CCCCATCTTATGTCATGGCAAAA 59.294 43.478 3.01 0.00 38.67 2.44
65 66 4.345837 CCCCATCTTATGTCATGGCAAAAT 59.654 41.667 3.01 0.00 38.67 1.82
66 67 5.510179 CCCCATCTTATGTCATGGCAAAATC 60.510 44.000 3.01 0.00 38.67 2.17
67 68 5.303589 CCCATCTTATGTCATGGCAAAATCT 59.696 40.000 3.01 0.00 38.67 2.40
68 69 6.183360 CCCATCTTATGTCATGGCAAAATCTT 60.183 38.462 3.01 0.00 38.67 2.40
69 70 6.921857 CCATCTTATGTCATGGCAAAATCTTC 59.078 38.462 3.01 0.00 33.37 2.87
70 71 7.201884 CCATCTTATGTCATGGCAAAATCTTCT 60.202 37.037 3.01 0.00 33.37 2.85
71 72 8.843262 CATCTTATGTCATGGCAAAATCTTCTA 58.157 33.333 3.01 0.00 0.00 2.10
72 73 8.985315 TCTTATGTCATGGCAAAATCTTCTAT 57.015 30.769 3.01 0.00 0.00 1.98
73 74 9.060347 TCTTATGTCATGGCAAAATCTTCTATC 57.940 33.333 3.01 0.00 0.00 2.08
74 75 8.985315 TTATGTCATGGCAAAATCTTCTATCT 57.015 30.769 3.01 0.00 0.00 1.98
75 76 6.932356 TGTCATGGCAAAATCTTCTATCTC 57.068 37.500 0.00 0.00 0.00 2.75
76 77 5.525012 TGTCATGGCAAAATCTTCTATCTCG 59.475 40.000 0.00 0.00 0.00 4.04
77 78 5.525378 GTCATGGCAAAATCTTCTATCTCGT 59.475 40.000 0.00 0.00 0.00 4.18
78 79 6.037610 GTCATGGCAAAATCTTCTATCTCGTT 59.962 38.462 0.00 0.00 0.00 3.85
79 80 6.599244 TCATGGCAAAATCTTCTATCTCGTTT 59.401 34.615 0.00 0.00 0.00 3.60
80 81 6.182039 TGGCAAAATCTTCTATCTCGTTTG 57.818 37.500 0.00 0.00 0.00 2.93
81 82 5.123820 TGGCAAAATCTTCTATCTCGTTTGG 59.876 40.000 0.00 0.00 0.00 3.28
82 83 5.354234 GGCAAAATCTTCTATCTCGTTTGGA 59.646 40.000 0.00 0.00 0.00 3.53
83 84 6.038714 GGCAAAATCTTCTATCTCGTTTGGAT 59.961 38.462 0.00 0.00 0.00 3.41
84 85 7.415653 GGCAAAATCTTCTATCTCGTTTGGATT 60.416 37.037 0.00 0.00 0.00 3.01
85 86 7.641802 GCAAAATCTTCTATCTCGTTTGGATTC 59.358 37.037 0.00 0.00 0.00 2.52
86 87 8.887717 CAAAATCTTCTATCTCGTTTGGATTCT 58.112 33.333 0.00 0.00 0.00 2.40
93 94 9.760077 TTCTATCTCGTTTGGATTCTATTAACC 57.240 33.333 0.00 0.00 0.00 2.85
94 95 9.144298 TCTATCTCGTTTGGATTCTATTAACCT 57.856 33.333 0.00 0.00 0.00 3.50
95 96 9.197694 CTATCTCGTTTGGATTCTATTAACCTG 57.802 37.037 0.00 0.00 0.00 4.00
96 97 7.177832 TCTCGTTTGGATTCTATTAACCTGA 57.822 36.000 0.00 0.00 0.00 3.86
97 98 7.039882 TCTCGTTTGGATTCTATTAACCTGAC 58.960 38.462 0.00 0.00 0.00 3.51
98 99 6.703319 TCGTTTGGATTCTATTAACCTGACA 58.297 36.000 0.00 0.00 0.00 3.58
99 100 7.335627 TCGTTTGGATTCTATTAACCTGACAT 58.664 34.615 0.00 0.00 0.00 3.06
100 101 8.479689 TCGTTTGGATTCTATTAACCTGACATA 58.520 33.333 0.00 0.00 0.00 2.29
101 102 9.104965 CGTTTGGATTCTATTAACCTGACATAA 57.895 33.333 0.00 0.00 0.00 1.90
103 104 9.627123 TTTGGATTCTATTAACCTGACATAAGG 57.373 33.333 0.00 0.00 43.57 2.69
104 105 8.561536 TGGATTCTATTAACCTGACATAAGGA 57.438 34.615 0.00 0.00 40.02 3.36
105 106 8.429641 TGGATTCTATTAACCTGACATAAGGAC 58.570 37.037 0.00 0.00 40.02 3.85
106 107 7.599245 GGATTCTATTAACCTGACATAAGGACG 59.401 40.741 0.00 0.00 40.02 4.79
107 108 6.401047 TCTATTAACCTGACATAAGGACGG 57.599 41.667 0.00 0.00 40.02 4.79
108 109 3.899052 TTAACCTGACATAAGGACGGG 57.101 47.619 0.00 0.00 40.02 5.28
109 110 1.946984 AACCTGACATAAGGACGGGA 58.053 50.000 0.00 0.00 40.02 5.14
110 111 2.176247 ACCTGACATAAGGACGGGAT 57.824 50.000 0.00 0.00 40.02 3.85
111 112 1.762957 ACCTGACATAAGGACGGGATG 59.237 52.381 0.00 0.00 40.02 3.51
112 113 1.762957 CCTGACATAAGGACGGGATGT 59.237 52.381 0.00 0.00 40.02 3.06
113 114 2.483714 CCTGACATAAGGACGGGATGTG 60.484 54.545 0.00 0.00 40.02 3.21
114 115 2.168521 CTGACATAAGGACGGGATGTGT 59.831 50.000 0.00 0.00 33.99 3.72
115 116 2.569853 TGACATAAGGACGGGATGTGTT 59.430 45.455 0.00 0.00 33.99 3.32
116 117 3.008594 TGACATAAGGACGGGATGTGTTT 59.991 43.478 0.00 0.00 33.99 2.83
117 118 3.606687 ACATAAGGACGGGATGTGTTTC 58.393 45.455 0.00 0.00 32.62 2.78
118 119 3.008594 ACATAAGGACGGGATGTGTTTCA 59.991 43.478 0.00 0.00 32.62 2.69
119 120 2.185004 AAGGACGGGATGTGTTTCAG 57.815 50.000 0.00 0.00 0.00 3.02
120 121 1.056660 AGGACGGGATGTGTTTCAGT 58.943 50.000 0.00 0.00 0.00 3.41
121 122 1.156736 GGACGGGATGTGTTTCAGTG 58.843 55.000 0.00 0.00 0.00 3.66
122 123 1.156736 GACGGGATGTGTTTCAGTGG 58.843 55.000 0.00 0.00 0.00 4.00
123 124 0.762418 ACGGGATGTGTTTCAGTGGA 59.238 50.000 0.00 0.00 0.00 4.02
124 125 1.142060 ACGGGATGTGTTTCAGTGGAA 59.858 47.619 0.00 0.00 0.00 3.53
125 126 1.535462 CGGGATGTGTTTCAGTGGAAC 59.465 52.381 7.40 7.40 31.35 3.62
126 127 1.886542 GGGATGTGTTTCAGTGGAACC 59.113 52.381 11.89 4.08 37.80 3.62
127 128 2.489073 GGGATGTGTTTCAGTGGAACCT 60.489 50.000 11.89 0.00 37.80 3.50
128 129 2.814336 GGATGTGTTTCAGTGGAACCTC 59.186 50.000 11.89 6.04 37.80 3.85
129 130 3.476552 GATGTGTTTCAGTGGAACCTCA 58.523 45.455 11.89 11.01 37.80 3.86
130 131 2.639065 TGTGTTTCAGTGGAACCTCAC 58.361 47.619 11.89 4.31 37.80 3.51
132 133 3.452990 TGTGTTTCAGTGGAACCTCACTA 59.547 43.478 11.89 0.00 45.24 2.74
133 134 4.102524 TGTGTTTCAGTGGAACCTCACTAT 59.897 41.667 11.89 0.00 45.24 2.12
134 135 5.305902 TGTGTTTCAGTGGAACCTCACTATA 59.694 40.000 11.89 0.00 45.24 1.31
135 136 6.013725 TGTGTTTCAGTGGAACCTCACTATAT 60.014 38.462 11.89 0.00 45.24 0.86
136 137 6.879458 GTGTTTCAGTGGAACCTCACTATATT 59.121 38.462 11.89 0.00 45.24 1.28
137 138 7.390718 GTGTTTCAGTGGAACCTCACTATATTT 59.609 37.037 11.89 0.00 45.24 1.40
138 139 7.390440 TGTTTCAGTGGAACCTCACTATATTTG 59.610 37.037 11.89 0.00 45.24 2.32
139 140 5.989477 TCAGTGGAACCTCACTATATTTGG 58.011 41.667 0.00 0.00 45.24 3.28
140 141 5.104527 TCAGTGGAACCTCACTATATTTGGG 60.105 44.000 0.00 0.00 45.24 4.12
141 142 4.788617 AGTGGAACCTCACTATATTTGGGT 59.211 41.667 0.00 0.00 45.18 4.51
142 143 5.104485 AGTGGAACCTCACTATATTTGGGTC 60.104 44.000 0.00 0.00 45.18 4.46
143 144 4.715713 GGAACCTCACTATATTTGGGTCC 58.284 47.826 0.00 0.00 45.89 4.46
144 145 5.632034 GAACCTCACTATATTTGGGTCCT 57.368 43.478 0.00 0.00 0.00 3.85
145 146 6.002653 GAACCTCACTATATTTGGGTCCTT 57.997 41.667 0.00 0.00 0.00 3.36
146 147 5.632034 ACCTCACTATATTTGGGTCCTTC 57.368 43.478 0.00 0.00 0.00 3.46
147 148 5.036916 ACCTCACTATATTTGGGTCCTTCA 58.963 41.667 0.00 0.00 0.00 3.02
148 149 5.104485 ACCTCACTATATTTGGGTCCTTCAC 60.104 44.000 0.00 0.00 0.00 3.18
149 150 5.104527 CCTCACTATATTTGGGTCCTTCACA 60.105 44.000 0.00 0.00 0.00 3.58
150 151 5.989477 TCACTATATTTGGGTCCTTCACAG 58.011 41.667 0.00 0.00 0.00 3.66
151 152 5.724370 TCACTATATTTGGGTCCTTCACAGA 59.276 40.000 0.00 0.00 0.00 3.41
152 153 6.214615 TCACTATATTTGGGTCCTTCACAGAA 59.785 38.462 0.00 0.00 0.00 3.02
153 154 6.316390 CACTATATTTGGGTCCTTCACAGAAC 59.684 42.308 0.00 0.00 0.00 3.01
154 155 1.961793 TTTGGGTCCTTCACAGAACG 58.038 50.000 0.00 0.00 0.00 3.95
155 156 0.834612 TTGGGTCCTTCACAGAACGT 59.165 50.000 0.00 0.00 0.00 3.99
156 157 1.707106 TGGGTCCTTCACAGAACGTA 58.293 50.000 0.00 0.00 0.00 3.57
157 158 1.342174 TGGGTCCTTCACAGAACGTAC 59.658 52.381 0.00 0.00 0.00 3.67
158 159 1.337541 GGGTCCTTCACAGAACGTACC 60.338 57.143 0.00 0.00 0.00 3.34
159 160 1.342174 GGTCCTTCACAGAACGTACCA 59.658 52.381 0.00 0.00 0.00 3.25
160 161 2.028385 GGTCCTTCACAGAACGTACCAT 60.028 50.000 0.00 0.00 0.00 3.55
161 162 2.993899 GTCCTTCACAGAACGTACCATG 59.006 50.000 0.00 0.00 0.00 3.66
162 163 1.732259 CCTTCACAGAACGTACCATGC 59.268 52.381 0.00 0.00 0.00 4.06
163 164 1.390123 CTTCACAGAACGTACCATGCG 59.610 52.381 0.00 0.00 0.00 4.73
164 165 1.011968 TCACAGAACGTACCATGCGC 61.012 55.000 0.00 0.00 0.00 6.09
165 166 1.014044 CACAGAACGTACCATGCGCT 61.014 55.000 9.73 0.00 0.00 5.92
166 167 0.736325 ACAGAACGTACCATGCGCTC 60.736 55.000 9.73 0.00 0.00 5.03
167 168 0.735978 CAGAACGTACCATGCGCTCA 60.736 55.000 9.73 0.00 0.00 4.26
168 169 0.175760 AGAACGTACCATGCGCTCAT 59.824 50.000 9.73 0.00 0.00 2.90
169 170 1.407618 AGAACGTACCATGCGCTCATA 59.592 47.619 9.73 0.00 0.00 2.15
170 171 1.521423 GAACGTACCATGCGCTCATAC 59.479 52.381 9.73 5.32 0.00 2.39
171 172 0.458260 ACGTACCATGCGCTCATACA 59.542 50.000 9.73 0.00 0.00 2.29
172 173 1.068588 ACGTACCATGCGCTCATACAT 59.931 47.619 9.73 0.00 0.00 2.29
173 174 2.135139 CGTACCATGCGCTCATACATT 58.865 47.619 9.73 0.00 0.00 2.71
174 175 2.155732 CGTACCATGCGCTCATACATTC 59.844 50.000 9.73 0.00 0.00 2.67
175 176 2.330440 ACCATGCGCTCATACATTCA 57.670 45.000 9.73 0.00 0.00 2.57
176 177 2.216046 ACCATGCGCTCATACATTCAG 58.784 47.619 9.73 0.00 0.00 3.02
177 178 2.158914 ACCATGCGCTCATACATTCAGA 60.159 45.455 9.73 0.00 0.00 3.27
178 179 2.479275 CCATGCGCTCATACATTCAGAG 59.521 50.000 9.73 0.00 0.00 3.35
179 180 2.229675 TGCGCTCATACATTCAGAGG 57.770 50.000 9.73 0.00 0.00 3.69
180 181 1.482182 TGCGCTCATACATTCAGAGGT 59.518 47.619 9.73 0.00 0.00 3.85
181 182 2.093500 TGCGCTCATACATTCAGAGGTT 60.093 45.455 9.73 0.00 0.00 3.50
182 183 2.541762 GCGCTCATACATTCAGAGGTTC 59.458 50.000 0.00 0.00 0.00 3.62
183 184 3.126831 CGCTCATACATTCAGAGGTTCC 58.873 50.000 0.00 0.00 0.00 3.62
184 185 3.126831 GCTCATACATTCAGAGGTTCCG 58.873 50.000 0.00 0.00 0.00 4.30
185 186 3.181475 GCTCATACATTCAGAGGTTCCGA 60.181 47.826 0.00 0.00 0.00 4.55
186 187 4.502259 GCTCATACATTCAGAGGTTCCGAT 60.502 45.833 0.00 0.00 0.00 4.18
187 188 4.948847 TCATACATTCAGAGGTTCCGATG 58.051 43.478 0.00 0.00 0.00 3.84
188 189 2.698855 ACATTCAGAGGTTCCGATGG 57.301 50.000 0.00 0.00 0.00 3.51
189 190 2.187958 ACATTCAGAGGTTCCGATGGA 58.812 47.619 0.00 0.00 0.00 3.41
190 191 2.571653 ACATTCAGAGGTTCCGATGGAA 59.428 45.455 0.00 0.00 39.66 3.53
191 192 3.009033 ACATTCAGAGGTTCCGATGGAAA 59.991 43.478 0.00 0.00 43.86 3.13
192 193 3.780804 TTCAGAGGTTCCGATGGAAAA 57.219 42.857 0.00 0.00 43.86 2.29
193 194 4.301072 TTCAGAGGTTCCGATGGAAAAT 57.699 40.909 0.00 0.00 43.86 1.82
194 195 5.429681 TTCAGAGGTTCCGATGGAAAATA 57.570 39.130 0.00 0.00 43.86 1.40
195 196 5.429681 TCAGAGGTTCCGATGGAAAATAA 57.570 39.130 0.00 0.00 43.86 1.40
196 197 5.183228 TCAGAGGTTCCGATGGAAAATAAC 58.817 41.667 0.00 0.00 43.86 1.89
197 198 4.941263 CAGAGGTTCCGATGGAAAATAACA 59.059 41.667 0.00 0.00 43.86 2.41
198 199 5.414454 CAGAGGTTCCGATGGAAAATAACAA 59.586 40.000 0.00 0.00 43.86 2.83
199 200 5.648092 AGAGGTTCCGATGGAAAATAACAAG 59.352 40.000 0.00 0.00 43.86 3.16
200 201 5.566469 AGGTTCCGATGGAAAATAACAAGA 58.434 37.500 0.00 0.00 43.86 3.02
201 202 6.007703 AGGTTCCGATGGAAAATAACAAGAA 58.992 36.000 0.00 0.00 43.86 2.52
202 203 6.492087 AGGTTCCGATGGAAAATAACAAGAAA 59.508 34.615 0.00 0.00 43.86 2.52
203 204 7.014808 AGGTTCCGATGGAAAATAACAAGAAAA 59.985 33.333 0.00 0.00 43.86 2.29
204 205 7.817478 GGTTCCGATGGAAAATAACAAGAAAAT 59.183 33.333 0.00 0.00 43.86 1.82
205 206 9.203421 GTTCCGATGGAAAATAACAAGAAAATT 57.797 29.630 0.00 0.00 43.86 1.82
206 207 9.771534 TTCCGATGGAAAATAACAAGAAAATTT 57.228 25.926 0.00 0.00 38.93 1.82
207 208 9.202273 TCCGATGGAAAATAACAAGAAAATTTG 57.798 29.630 0.00 0.00 0.00 2.32
208 209 8.442384 CCGATGGAAAATAACAAGAAAATTTGG 58.558 33.333 0.00 0.00 32.32 3.28
209 210 9.202273 CGATGGAAAATAACAAGAAAATTTGGA 57.798 29.630 0.00 0.00 32.32 3.53
212 213 9.898152 TGGAAAATAACAAGAAAATTTGGAAGT 57.102 25.926 0.00 0.00 32.32 3.01
226 227 9.971922 AAAATTTGGAAGTCTAAGATTTCACTG 57.028 29.630 0.00 0.00 31.33 3.66
227 228 8.924511 AATTTGGAAGTCTAAGATTTCACTGA 57.075 30.769 0.00 0.00 31.33 3.41
228 229 8.924511 ATTTGGAAGTCTAAGATTTCACTGAA 57.075 30.769 0.00 0.00 31.33 3.02
229 230 8.746052 TTTGGAAGTCTAAGATTTCACTGAAA 57.254 30.769 6.67 6.67 35.94 2.69
230 231 7.969536 TGGAAGTCTAAGATTTCACTGAAAG 57.030 36.000 9.97 0.00 34.92 2.62
246 247 5.295431 CTGAAAGTCAAAATATGGTGCGA 57.705 39.130 0.00 0.00 0.00 5.10
247 248 5.883661 CTGAAAGTCAAAATATGGTGCGAT 58.116 37.500 0.00 0.00 0.00 4.58
248 249 6.266168 TGAAAGTCAAAATATGGTGCGATT 57.734 33.333 0.00 0.00 0.00 3.34
249 250 6.092092 TGAAAGTCAAAATATGGTGCGATTG 58.908 36.000 0.00 0.00 0.00 2.67
250 251 5.643379 AAGTCAAAATATGGTGCGATTGT 57.357 34.783 0.00 0.00 0.00 2.71
251 252 5.235305 AGTCAAAATATGGTGCGATTGTC 57.765 39.130 0.00 0.00 0.00 3.18
252 253 4.028383 GTCAAAATATGGTGCGATTGTCG 58.972 43.478 0.00 0.00 43.89 4.35
264 265 3.997319 CGATTGTCGCATCTCTTGAAA 57.003 42.857 0.00 0.00 31.14 2.69
265 266 4.526970 CGATTGTCGCATCTCTTGAAAT 57.473 40.909 0.00 0.00 31.14 2.17
266 267 4.269312 CGATTGTCGCATCTCTTGAAATG 58.731 43.478 0.00 0.00 31.14 2.32
267 268 4.201753 CGATTGTCGCATCTCTTGAAATGT 60.202 41.667 0.00 0.00 31.14 2.71
268 269 5.005682 CGATTGTCGCATCTCTTGAAATGTA 59.994 40.000 0.00 0.00 31.14 2.29
269 270 6.292542 CGATTGTCGCATCTCTTGAAATGTAT 60.293 38.462 0.00 0.00 31.14 2.29
270 271 5.723492 TGTCGCATCTCTTGAAATGTATG 57.277 39.130 0.00 0.00 0.00 2.39
271 272 4.571984 TGTCGCATCTCTTGAAATGTATGG 59.428 41.667 0.00 0.00 0.00 2.74
272 273 4.572389 GTCGCATCTCTTGAAATGTATGGT 59.428 41.667 0.00 0.00 0.00 3.55
273 274 5.753438 GTCGCATCTCTTGAAATGTATGGTA 59.247 40.000 0.00 0.00 0.00 3.25
274 275 6.425114 GTCGCATCTCTTGAAATGTATGGTAT 59.575 38.462 0.00 0.00 0.00 2.73
275 276 6.992123 TCGCATCTCTTGAAATGTATGGTATT 59.008 34.615 0.00 0.00 0.00 1.89
276 277 7.498900 TCGCATCTCTTGAAATGTATGGTATTT 59.501 33.333 0.00 0.00 0.00 1.40
277 278 8.773645 CGCATCTCTTGAAATGTATGGTATTTA 58.226 33.333 0.00 0.00 0.00 1.40
325 326 8.986477 AATTCTTTTGTAGTACCATGCATTTC 57.014 30.769 0.00 0.00 0.00 2.17
326 327 7.517614 TTCTTTTGTAGTACCATGCATTTCA 57.482 32.000 0.00 0.00 0.00 2.69
327 328 7.517614 TCTTTTGTAGTACCATGCATTTCAA 57.482 32.000 0.00 0.00 0.00 2.69
328 329 7.592938 TCTTTTGTAGTACCATGCATTTCAAG 58.407 34.615 0.00 0.00 0.00 3.02
329 330 7.446931 TCTTTTGTAGTACCATGCATTTCAAGA 59.553 33.333 0.00 0.00 0.00 3.02
330 331 6.741992 TTGTAGTACCATGCATTTCAAGAG 57.258 37.500 0.00 0.00 0.00 2.85
331 332 6.048732 TGTAGTACCATGCATTTCAAGAGA 57.951 37.500 0.00 0.00 0.00 3.10
332 333 6.472016 TGTAGTACCATGCATTTCAAGAGAA 58.528 36.000 0.00 0.00 0.00 2.87
333 334 6.939730 TGTAGTACCATGCATTTCAAGAGAAA 59.060 34.615 0.00 0.00 46.90 2.52
352 353 8.924511 AGAGAAATTTTATCTTGACTTGGTCA 57.075 30.769 0.45 0.00 41.09 4.02
353 354 9.525826 AGAGAAATTTTATCTTGACTTGGTCAT 57.474 29.630 0.45 0.00 42.40 3.06
354 355 9.565213 GAGAAATTTTATCTTGACTTGGTCATG 57.435 33.333 1.10 4.52 42.40 3.07
355 356 9.082313 AGAAATTTTATCTTGACTTGGTCATGT 57.918 29.630 11.43 0.00 42.40 3.21
356 357 9.696917 GAAATTTTATCTTGACTTGGTCATGTT 57.303 29.630 11.43 7.50 42.40 2.71
386 387 2.159430 TGCGAAAATTGACTCGGTCATG 59.841 45.455 7.43 0.00 42.40 3.07
391 392 5.445939 CGAAAATTGACTCGGTCATGTTAGG 60.446 44.000 7.43 0.00 42.40 2.69
394 395 1.471287 TGACTCGGTCATGTTAGGACG 59.529 52.381 3.02 0.00 37.67 4.79
396 397 2.163010 GACTCGGTCATGTTAGGACGAA 59.837 50.000 0.00 0.00 36.12 3.85
490 492 8.786898 TCAAATCTGTAGAAAAATGAAGAGTGG 58.213 33.333 0.00 0.00 0.00 4.00
491 493 7.693969 AATCTGTAGAAAAATGAAGAGTGGG 57.306 36.000 0.00 0.00 0.00 4.61
492 494 5.560724 TCTGTAGAAAAATGAAGAGTGGGG 58.439 41.667 0.00 0.00 0.00 4.96
493 495 5.309543 TCTGTAGAAAAATGAAGAGTGGGGA 59.690 40.000 0.00 0.00 0.00 4.81
494 496 6.012508 TCTGTAGAAAAATGAAGAGTGGGGAT 60.013 38.462 0.00 0.00 0.00 3.85
495 497 5.945784 TGTAGAAAAATGAAGAGTGGGGATG 59.054 40.000 0.00 0.00 0.00 3.51
496 498 3.766051 AGAAAAATGAAGAGTGGGGATGC 59.234 43.478 0.00 0.00 0.00 3.91
497 499 3.463048 AAAATGAAGAGTGGGGATGCT 57.537 42.857 0.00 0.00 0.00 3.79
498 500 2.725221 AATGAAGAGTGGGGATGCTC 57.275 50.000 0.00 0.00 0.00 4.26
499 501 0.467384 ATGAAGAGTGGGGATGCTCG 59.533 55.000 0.00 0.00 0.00 5.03
500 502 0.904865 TGAAGAGTGGGGATGCTCGT 60.905 55.000 0.00 0.00 0.00 4.18
501 503 0.179097 GAAGAGTGGGGATGCTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
502 504 0.616111 AAGAGTGGGGATGCTCGTCT 60.616 55.000 0.00 0.00 0.00 4.18
503 505 1.142748 GAGTGGGGATGCTCGTCTG 59.857 63.158 0.00 0.00 0.00 3.51
504 506 2.187946 GTGGGGATGCTCGTCTGG 59.812 66.667 0.00 0.00 0.00 3.86
505 507 2.038813 TGGGGATGCTCGTCTGGA 59.961 61.111 0.00 0.00 0.00 3.86
506 508 1.383109 TGGGGATGCTCGTCTGGAT 60.383 57.895 0.00 0.00 0.00 3.41
507 509 0.105709 TGGGGATGCTCGTCTGGATA 60.106 55.000 0.00 0.00 0.00 2.59
508 510 0.318762 GGGGATGCTCGTCTGGATAC 59.681 60.000 0.00 0.00 0.00 2.24
594 596 3.905331 AGATAGTCTGACCTCGGCA 57.095 52.632 3.76 0.00 0.00 5.69
633 639 3.780902 ACGTGCGACTAATGATCATCAA 58.219 40.909 9.06 0.00 0.00 2.57
684 692 3.843893 TCGTGATCCATGTTCCATGAT 57.156 42.857 5.80 0.00 0.00 2.45
884 1234 3.622826 CCACGTCCCCTGGTTCGT 61.623 66.667 0.00 0.00 35.75 3.85
906 1256 6.311055 GTAATTTACGACTAGGACCTCGAT 57.689 41.667 8.48 0.00 33.96 3.59
1014 1365 0.030504 CGCGAATGCCAATGCCAATA 59.969 50.000 0.00 0.00 38.08 1.90
1079 1430 0.893270 GTGGGGTGTAACATGCTGCA 60.893 55.000 4.13 4.13 39.98 4.41
1728 2079 4.572571 GCCCACACCGACAACCCA 62.573 66.667 0.00 0.00 0.00 4.51
1920 2271 7.094118 ACAATAATTTATGTGGTACGGTGCTTT 60.094 33.333 0.00 0.00 0.00 3.51
1953 2304 8.225603 AGTCATCTTTTTAAGAGACTGCAAAA 57.774 30.769 14.81 0.00 40.83 2.44
1954 2305 8.686334 AGTCATCTTTTTAAGAGACTGCAAAAA 58.314 29.630 14.81 0.00 40.83 1.94
1996 2347 9.427821 AGGAGTTGATACTAACTTCATGTCTAT 57.572 33.333 0.00 0.00 40.78 1.98
2099 2450 3.844640 ACAGGAAGCTTAATTTGGTGGT 58.155 40.909 0.00 0.00 0.00 4.16
2119 2471 1.473550 AAGGAAATGGGGGTTGGGTA 58.526 50.000 0.00 0.00 0.00 3.69
2120 2472 0.708209 AGGAAATGGGGGTTGGGTAC 59.292 55.000 0.00 0.00 0.00 3.34
2154 2506 4.509616 CCATTGTTGATGTGCATTGGAAT 58.490 39.130 0.00 0.00 37.98 3.01
2213 2565 4.798574 CTTGCTGATGTTCTTGGGTTAAC 58.201 43.478 0.00 0.00 0.00 2.01
2298 2650 4.993705 TGGTGTTTTTCCATCTAGAGGT 57.006 40.909 3.36 0.00 0.00 3.85
2463 2839 2.417787 GCCCAACATGATCTTTTCTGCC 60.418 50.000 0.00 0.00 0.00 4.85
2874 3257 9.218525 TCTCCCAAATTTCTGAAGAGATATACT 57.781 33.333 1.90 0.00 0.00 2.12
2876 3259 8.213679 TCCCAAATTTCTGAAGAGATATACTGG 58.786 37.037 0.00 0.00 30.39 4.00
2880 3263 8.517323 AATTTCTGAAGAGATATACTGGGGAT 57.483 34.615 0.00 0.00 0.00 3.85
2895 3278 2.241176 TGGGGATTTGAGTGGGATGTAC 59.759 50.000 0.00 0.00 0.00 2.90
3064 3447 0.765135 TCTTCCCCCGTGTGAAGGAA 60.765 55.000 0.00 0.00 38.76 3.36
3094 3477 0.663153 GCAAGAGTTGGTTCGCAACT 59.337 50.000 6.61 6.61 44.58 3.16
3178 3561 8.918202 TTGGATTTATAACAAACAGAGTGACT 57.082 30.769 0.00 0.00 0.00 3.41
3214 3597 1.005748 CGACAGCTGGCAGTCAGAA 60.006 57.895 22.03 0.00 46.18 3.02
3311 3694 4.371624 AAGTTCTCCATGTTGGTCATCA 57.628 40.909 0.00 0.00 39.03 3.07
3317 3700 4.132336 CTCCATGTTGGTCATCATAGTGG 58.868 47.826 0.00 0.00 39.03 4.00
3318 3701 3.117926 TCCATGTTGGTCATCATAGTGGG 60.118 47.826 0.00 0.00 39.03 4.61
3343 3726 3.031013 CCCCATCATAAGGTTGTTTCCC 58.969 50.000 0.00 0.00 0.00 3.97
3345 3728 3.352648 CCATCATAAGGTTGTTTCCCGT 58.647 45.455 0.00 0.00 0.00 5.28
3374 3757 5.153950 GTGATCACCTGGATATACCCTTC 57.846 47.826 15.31 0.00 36.00 3.46
3399 3782 5.440234 TGCTATTTTACGCAGTTTTTGGA 57.560 34.783 0.00 0.00 37.78 3.53
3504 3887 0.392193 CCGTGATCTTGCTGCTCCTT 60.392 55.000 0.00 0.00 0.00 3.36
3680 4066 4.158394 CAGGTAAAATGGTGCAGCAGTTAT 59.842 41.667 29.04 20.69 0.00 1.89
3797 4183 2.449137 AGGCAATCATGAAGGGAAGG 57.551 50.000 0.00 0.00 0.00 3.46
3903 4289 3.454812 GACAGAAAACTAGATAGGGGCCA 59.545 47.826 4.39 0.00 0.00 5.36
4097 4492 6.260050 TGTTCTTCAGGTGTCTGTTCATTTAC 59.740 38.462 0.00 0.00 41.59 2.01
4130 4525 8.857216 CATAGTTGCATGATTTTTCTTCAGAAC 58.143 33.333 0.00 0.00 33.13 3.01
4223 4660 4.403432 AGAGGCACATACAATTTGGGAATG 59.597 41.667 0.78 4.59 0.00 2.67
4240 4677 1.789576 ATGGTCCCGGTCCAAAAGCT 61.790 55.000 17.48 0.83 38.52 3.74
4317 4754 5.931441 GCGGTTGCTATCTTCAATATTCT 57.069 39.130 0.00 0.00 38.39 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.437682 AAGAAATATCTGGCGGGAATGA 57.562 40.909 0.00 0.00 35.59 2.57
1 2 4.580167 TGAAAGAAATATCTGGCGGGAATG 59.420 41.667 0.00 0.00 35.59 2.67
2 3 4.792068 TGAAAGAAATATCTGGCGGGAAT 58.208 39.130 0.00 0.00 35.59 3.01
3 4 4.199310 CTGAAAGAAATATCTGGCGGGAA 58.801 43.478 0.00 0.00 35.59 3.97
4 5 3.433598 CCTGAAAGAAATATCTGGCGGGA 60.434 47.826 0.00 0.00 37.88 5.14
5 6 2.880890 CCTGAAAGAAATATCTGGCGGG 59.119 50.000 0.00 0.00 35.59 6.13
6 7 2.291741 GCCTGAAAGAAATATCTGGCGG 59.708 50.000 7.73 0.00 46.24 6.13
7 8 3.615849 GCCTGAAAGAAATATCTGGCG 57.384 47.619 7.73 0.00 46.24 5.69
9 10 6.956202 ATCTTGCCTGAAAGAAATATCTGG 57.044 37.500 0.00 0.00 39.54 3.86
10 11 8.464404 TCAAATCTTGCCTGAAAGAAATATCTG 58.536 33.333 0.00 0.00 39.54 2.90
11 12 8.585471 TCAAATCTTGCCTGAAAGAAATATCT 57.415 30.769 0.00 0.00 39.54 1.98
12 13 9.813446 AATCAAATCTTGCCTGAAAGAAATATC 57.187 29.630 0.00 0.00 39.54 1.63
13 14 9.595823 CAATCAAATCTTGCCTGAAAGAAATAT 57.404 29.630 0.00 0.00 39.54 1.28
14 15 8.036575 CCAATCAAATCTTGCCTGAAAGAAATA 58.963 33.333 0.00 0.00 39.54 1.40
15 16 6.877322 CCAATCAAATCTTGCCTGAAAGAAAT 59.123 34.615 0.00 0.00 39.54 2.17
16 17 6.183360 ACCAATCAAATCTTGCCTGAAAGAAA 60.183 34.615 0.00 0.00 39.54 2.52
17 18 5.305128 ACCAATCAAATCTTGCCTGAAAGAA 59.695 36.000 0.00 0.00 39.54 2.52
18 19 4.834496 ACCAATCAAATCTTGCCTGAAAGA 59.166 37.500 0.00 0.00 40.36 2.52
19 20 5.143376 ACCAATCAAATCTTGCCTGAAAG 57.857 39.130 0.00 0.00 0.00 2.62
20 21 4.021192 GGACCAATCAAATCTTGCCTGAAA 60.021 41.667 0.00 0.00 0.00 2.69
21 22 3.511146 GGACCAATCAAATCTTGCCTGAA 59.489 43.478 0.00 0.00 0.00 3.02
22 23 3.091545 GGACCAATCAAATCTTGCCTGA 58.908 45.455 0.00 0.00 0.00 3.86
23 24 2.167075 GGGACCAATCAAATCTTGCCTG 59.833 50.000 0.00 0.00 0.00 4.85
24 25 2.460669 GGGACCAATCAAATCTTGCCT 58.539 47.619 0.00 0.00 0.00 4.75
25 26 2.967599 GGGACCAATCAAATCTTGCC 57.032 50.000 0.00 0.00 0.00 4.52
40 41 2.158623 TGCCATGACATAAGATGGGGAC 60.159 50.000 0.00 0.00 39.75 4.46
41 42 2.134354 TGCCATGACATAAGATGGGGA 58.866 47.619 0.00 0.00 39.75 4.81
42 43 2.662535 TGCCATGACATAAGATGGGG 57.337 50.000 0.00 0.00 39.75 4.96
43 44 5.303589 AGATTTTGCCATGACATAAGATGGG 59.696 40.000 0.00 0.00 39.75 4.00
44 45 6.401047 AGATTTTGCCATGACATAAGATGG 57.599 37.500 0.00 0.00 41.95 3.51
45 46 7.713750 AGAAGATTTTGCCATGACATAAGATG 58.286 34.615 0.00 0.00 0.00 2.90
46 47 7.893124 AGAAGATTTTGCCATGACATAAGAT 57.107 32.000 0.00 0.00 0.00 2.40
47 48 8.985315 ATAGAAGATTTTGCCATGACATAAGA 57.015 30.769 0.00 0.00 0.00 2.10
48 49 9.064706 AGATAGAAGATTTTGCCATGACATAAG 57.935 33.333 0.00 0.00 0.00 1.73
49 50 8.985315 AGATAGAAGATTTTGCCATGACATAA 57.015 30.769 0.00 0.00 0.00 1.90
50 51 7.386025 CGAGATAGAAGATTTTGCCATGACATA 59.614 37.037 0.00 0.00 0.00 2.29
51 52 6.204301 CGAGATAGAAGATTTTGCCATGACAT 59.796 38.462 0.00 0.00 0.00 3.06
52 53 5.525012 CGAGATAGAAGATTTTGCCATGACA 59.475 40.000 0.00 0.00 0.00 3.58
53 54 5.525378 ACGAGATAGAAGATTTTGCCATGAC 59.475 40.000 0.00 0.00 0.00 3.06
54 55 5.674525 ACGAGATAGAAGATTTTGCCATGA 58.325 37.500 0.00 0.00 0.00 3.07
55 56 5.998454 ACGAGATAGAAGATTTTGCCATG 57.002 39.130 0.00 0.00 0.00 3.66
56 57 6.183360 CCAAACGAGATAGAAGATTTTGCCAT 60.183 38.462 0.00 0.00 0.00 4.40
57 58 5.123820 CCAAACGAGATAGAAGATTTTGCCA 59.876 40.000 0.00 0.00 0.00 4.92
58 59 5.354234 TCCAAACGAGATAGAAGATTTTGCC 59.646 40.000 0.00 0.00 0.00 4.52
59 60 6.422776 TCCAAACGAGATAGAAGATTTTGC 57.577 37.500 0.00 0.00 0.00 3.68
60 61 8.887717 AGAATCCAAACGAGATAGAAGATTTTG 58.112 33.333 0.00 0.00 0.00 2.44
67 68 9.760077 GGTTAATAGAATCCAAACGAGATAGAA 57.240 33.333 0.00 0.00 0.00 2.10
68 69 9.144298 AGGTTAATAGAATCCAAACGAGATAGA 57.856 33.333 0.00 0.00 0.00 1.98
69 70 9.197694 CAGGTTAATAGAATCCAAACGAGATAG 57.802 37.037 0.00 0.00 0.00 2.08
70 71 8.920174 TCAGGTTAATAGAATCCAAACGAGATA 58.080 33.333 0.00 0.00 0.00 1.98
71 72 7.711339 GTCAGGTTAATAGAATCCAAACGAGAT 59.289 37.037 0.00 0.00 0.00 2.75
72 73 7.039882 GTCAGGTTAATAGAATCCAAACGAGA 58.960 38.462 0.00 0.00 0.00 4.04
73 74 6.816640 TGTCAGGTTAATAGAATCCAAACGAG 59.183 38.462 0.00 0.00 0.00 4.18
74 75 6.703319 TGTCAGGTTAATAGAATCCAAACGA 58.297 36.000 0.00 0.00 0.00 3.85
75 76 6.978343 TGTCAGGTTAATAGAATCCAAACG 57.022 37.500 0.00 0.00 0.00 3.60
77 78 9.627123 CCTTATGTCAGGTTAATAGAATCCAAA 57.373 33.333 0.00 0.00 0.00 3.28
78 79 8.998814 TCCTTATGTCAGGTTAATAGAATCCAA 58.001 33.333 0.00 0.00 35.15 3.53
79 80 8.429641 GTCCTTATGTCAGGTTAATAGAATCCA 58.570 37.037 0.00 0.00 35.15 3.41
80 81 7.599245 CGTCCTTATGTCAGGTTAATAGAATCC 59.401 40.741 0.00 0.00 35.15 3.01
81 82 7.599245 CCGTCCTTATGTCAGGTTAATAGAATC 59.401 40.741 0.00 0.00 35.15 2.52
82 83 7.442656 CCGTCCTTATGTCAGGTTAATAGAAT 58.557 38.462 0.00 0.00 35.15 2.40
83 84 6.183360 CCCGTCCTTATGTCAGGTTAATAGAA 60.183 42.308 0.00 0.00 35.15 2.10
84 85 5.303589 CCCGTCCTTATGTCAGGTTAATAGA 59.696 44.000 0.00 0.00 35.15 1.98
85 86 5.303589 TCCCGTCCTTATGTCAGGTTAATAG 59.696 44.000 0.00 0.00 35.15 1.73
86 87 5.210430 TCCCGTCCTTATGTCAGGTTAATA 58.790 41.667 0.00 0.00 35.15 0.98
87 88 4.035112 TCCCGTCCTTATGTCAGGTTAAT 58.965 43.478 0.00 0.00 35.15 1.40
88 89 3.443052 TCCCGTCCTTATGTCAGGTTAA 58.557 45.455 0.00 0.00 35.15 2.01
89 90 3.104519 TCCCGTCCTTATGTCAGGTTA 57.895 47.619 0.00 0.00 35.15 2.85
90 91 1.946984 TCCCGTCCTTATGTCAGGTT 58.053 50.000 0.00 0.00 35.15 3.50
91 92 1.762957 CATCCCGTCCTTATGTCAGGT 59.237 52.381 0.00 0.00 35.15 4.00
92 93 1.762957 ACATCCCGTCCTTATGTCAGG 59.237 52.381 0.00 0.00 34.86 3.86
93 94 2.168521 ACACATCCCGTCCTTATGTCAG 59.831 50.000 0.00 0.00 31.60 3.51
94 95 2.184533 ACACATCCCGTCCTTATGTCA 58.815 47.619 0.00 0.00 31.60 3.58
95 96 2.981859 ACACATCCCGTCCTTATGTC 57.018 50.000 0.00 0.00 31.60 3.06
96 97 3.008594 TGAAACACATCCCGTCCTTATGT 59.991 43.478 0.00 0.00 34.22 2.29
97 98 3.605634 TGAAACACATCCCGTCCTTATG 58.394 45.455 0.00 0.00 0.00 1.90
98 99 3.263425 ACTGAAACACATCCCGTCCTTAT 59.737 43.478 0.00 0.00 0.00 1.73
99 100 2.635915 ACTGAAACACATCCCGTCCTTA 59.364 45.455 0.00 0.00 0.00 2.69
100 101 1.420138 ACTGAAACACATCCCGTCCTT 59.580 47.619 0.00 0.00 0.00 3.36
101 102 1.056660 ACTGAAACACATCCCGTCCT 58.943 50.000 0.00 0.00 0.00 3.85
102 103 1.156736 CACTGAAACACATCCCGTCC 58.843 55.000 0.00 0.00 0.00 4.79
103 104 1.156736 CCACTGAAACACATCCCGTC 58.843 55.000 0.00 0.00 0.00 4.79
104 105 0.762418 TCCACTGAAACACATCCCGT 59.238 50.000 0.00 0.00 0.00 5.28
105 106 1.535462 GTTCCACTGAAACACATCCCG 59.465 52.381 0.00 0.00 30.79 5.14
106 107 1.886542 GGTTCCACTGAAACACATCCC 59.113 52.381 0.00 0.00 38.13 3.85
107 108 2.814336 GAGGTTCCACTGAAACACATCC 59.186 50.000 0.00 0.00 40.85 3.51
108 109 3.251004 GTGAGGTTCCACTGAAACACATC 59.749 47.826 0.00 0.00 40.22 3.06
109 110 3.117888 AGTGAGGTTCCACTGAAACACAT 60.118 43.478 0.00 0.00 44.93 3.21
110 111 2.238646 AGTGAGGTTCCACTGAAACACA 59.761 45.455 0.00 0.00 44.93 3.72
111 112 2.919228 AGTGAGGTTCCACTGAAACAC 58.081 47.619 0.00 0.00 44.93 3.32
112 113 4.974645 ATAGTGAGGTTCCACTGAAACA 57.025 40.909 6.79 0.00 46.00 2.83
113 114 7.148239 CCAAATATAGTGAGGTTCCACTGAAAC 60.148 40.741 6.79 0.00 46.00 2.78
114 115 6.884295 CCAAATATAGTGAGGTTCCACTGAAA 59.116 38.462 6.79 0.00 46.00 2.69
115 116 6.414732 CCAAATATAGTGAGGTTCCACTGAA 58.585 40.000 6.79 0.00 46.00 3.02
116 117 5.104527 CCCAAATATAGTGAGGTTCCACTGA 60.105 44.000 6.79 0.00 46.00 3.41
117 118 5.126067 CCCAAATATAGTGAGGTTCCACTG 58.874 45.833 6.79 0.00 46.00 3.66
119 120 5.112129 ACCCAAATATAGTGAGGTTCCAC 57.888 43.478 0.00 0.00 37.32 4.02
120 121 4.165372 GGACCCAAATATAGTGAGGTTCCA 59.835 45.833 4.34 0.00 0.00 3.53
121 122 4.412528 AGGACCCAAATATAGTGAGGTTCC 59.587 45.833 1.66 1.66 0.00 3.62
122 123 5.632034 AGGACCCAAATATAGTGAGGTTC 57.368 43.478 0.00 0.00 0.00 3.62
123 124 5.491078 TGAAGGACCCAAATATAGTGAGGTT 59.509 40.000 0.00 0.00 0.00 3.50
124 125 5.036916 TGAAGGACCCAAATATAGTGAGGT 58.963 41.667 0.00 0.00 0.00 3.85
125 126 5.104527 TGTGAAGGACCCAAATATAGTGAGG 60.105 44.000 0.00 0.00 0.00 3.86
126 127 5.989477 TGTGAAGGACCCAAATATAGTGAG 58.011 41.667 0.00 0.00 0.00 3.51
127 128 5.724370 TCTGTGAAGGACCCAAATATAGTGA 59.276 40.000 0.00 0.00 0.00 3.41
128 129 5.989477 TCTGTGAAGGACCCAAATATAGTG 58.011 41.667 0.00 0.00 0.00 2.74
129 130 6.415573 GTTCTGTGAAGGACCCAAATATAGT 58.584 40.000 0.00 0.00 0.00 2.12
130 131 5.523916 CGTTCTGTGAAGGACCCAAATATAG 59.476 44.000 0.00 0.00 0.00 1.31
131 132 5.046159 ACGTTCTGTGAAGGACCCAAATATA 60.046 40.000 6.95 0.00 0.00 0.86
132 133 4.261801 CGTTCTGTGAAGGACCCAAATAT 58.738 43.478 0.00 0.00 0.00 1.28
133 134 3.071892 ACGTTCTGTGAAGGACCCAAATA 59.928 43.478 6.95 0.00 0.00 1.40
134 135 2.158667 ACGTTCTGTGAAGGACCCAAAT 60.159 45.455 6.95 0.00 0.00 2.32
135 136 1.210967 ACGTTCTGTGAAGGACCCAAA 59.789 47.619 6.95 0.00 0.00 3.28
136 137 0.834612 ACGTTCTGTGAAGGACCCAA 59.165 50.000 6.95 0.00 0.00 4.12
137 138 1.342174 GTACGTTCTGTGAAGGACCCA 59.658 52.381 0.00 0.00 0.00 4.51
138 139 1.337541 GGTACGTTCTGTGAAGGACCC 60.338 57.143 0.00 3.16 0.00 4.46
139 140 1.342174 TGGTACGTTCTGTGAAGGACC 59.658 52.381 0.00 9.49 0.00 4.46
140 141 2.806608 TGGTACGTTCTGTGAAGGAC 57.193 50.000 0.00 2.17 0.00 3.85
141 142 2.611971 GCATGGTACGTTCTGTGAAGGA 60.612 50.000 0.00 0.00 0.00 3.36
142 143 1.732259 GCATGGTACGTTCTGTGAAGG 59.268 52.381 0.00 0.00 0.00 3.46
143 144 1.390123 CGCATGGTACGTTCTGTGAAG 59.610 52.381 0.00 0.00 0.00 3.02
144 145 1.424403 CGCATGGTACGTTCTGTGAA 58.576 50.000 0.00 0.00 0.00 3.18
145 146 1.011968 GCGCATGGTACGTTCTGTGA 61.012 55.000 0.30 0.00 0.00 3.58
146 147 1.014044 AGCGCATGGTACGTTCTGTG 61.014 55.000 11.47 0.00 0.00 3.66
147 148 0.736325 GAGCGCATGGTACGTTCTGT 60.736 55.000 11.47 0.00 37.71 3.41
148 149 0.735978 TGAGCGCATGGTACGTTCTG 60.736 55.000 11.47 0.00 40.79 3.02
149 150 0.175760 ATGAGCGCATGGTACGTTCT 59.824 50.000 11.47 0.00 40.79 3.01
150 151 1.521423 GTATGAGCGCATGGTACGTTC 59.479 52.381 13.71 0.00 40.61 3.95
151 152 1.134936 TGTATGAGCGCATGGTACGTT 60.135 47.619 13.71 0.00 35.94 3.99
152 153 0.458260 TGTATGAGCGCATGGTACGT 59.542 50.000 13.71 0.00 35.94 3.57
153 154 1.783284 ATGTATGAGCGCATGGTACG 58.217 50.000 13.71 0.00 35.94 3.67
154 155 3.130633 TGAATGTATGAGCGCATGGTAC 58.869 45.455 13.71 7.71 35.94 3.34
155 156 3.069443 TCTGAATGTATGAGCGCATGGTA 59.931 43.478 13.71 0.00 35.94 3.25
156 157 2.158914 TCTGAATGTATGAGCGCATGGT 60.159 45.455 13.71 0.00 35.94 3.55
157 158 2.479275 CTCTGAATGTATGAGCGCATGG 59.521 50.000 13.71 0.00 35.94 3.66
158 159 2.479275 CCTCTGAATGTATGAGCGCATG 59.521 50.000 13.71 0.00 35.94 4.06
159 160 2.103771 ACCTCTGAATGTATGAGCGCAT 59.896 45.455 11.47 8.35 38.54 4.73
160 161 1.482182 ACCTCTGAATGTATGAGCGCA 59.518 47.619 11.47 0.00 0.00 6.09
161 162 2.231215 ACCTCTGAATGTATGAGCGC 57.769 50.000 0.00 0.00 0.00 5.92
162 163 3.126831 GGAACCTCTGAATGTATGAGCG 58.873 50.000 0.00 0.00 0.00 5.03
163 164 3.126831 CGGAACCTCTGAATGTATGAGC 58.873 50.000 0.00 0.00 0.00 4.26
164 165 4.655762 TCGGAACCTCTGAATGTATGAG 57.344 45.455 0.00 0.00 0.00 2.90
165 166 4.202253 CCATCGGAACCTCTGAATGTATGA 60.202 45.833 0.00 0.00 35.07 2.15
166 167 4.060900 CCATCGGAACCTCTGAATGTATG 58.939 47.826 0.00 0.00 35.07 2.39
167 168 3.967326 TCCATCGGAACCTCTGAATGTAT 59.033 43.478 0.00 0.00 35.07 2.29
168 169 3.371034 TCCATCGGAACCTCTGAATGTA 58.629 45.455 0.00 0.00 35.07 2.29
169 170 2.187958 TCCATCGGAACCTCTGAATGT 58.812 47.619 0.00 0.00 35.07 2.71
170 171 2.988010 TCCATCGGAACCTCTGAATG 57.012 50.000 0.00 0.00 35.07 2.67
171 172 4.301072 TTTTCCATCGGAACCTCTGAAT 57.699 40.909 0.00 0.00 41.87 2.57
172 173 3.780804 TTTTCCATCGGAACCTCTGAA 57.219 42.857 0.00 0.00 41.87 3.02
173 174 5.183228 GTTATTTTCCATCGGAACCTCTGA 58.817 41.667 0.00 0.00 41.87 3.27
174 175 4.941263 TGTTATTTTCCATCGGAACCTCTG 59.059 41.667 0.00 0.00 41.87 3.35
175 176 5.174037 TGTTATTTTCCATCGGAACCTCT 57.826 39.130 0.00 0.00 41.87 3.69
176 177 5.646360 TCTTGTTATTTTCCATCGGAACCTC 59.354 40.000 0.00 0.00 41.87 3.85
177 178 5.566469 TCTTGTTATTTTCCATCGGAACCT 58.434 37.500 0.00 0.00 41.87 3.50
178 179 5.890424 TCTTGTTATTTTCCATCGGAACC 57.110 39.130 0.00 0.00 41.87 3.62
179 180 8.757164 ATTTTCTTGTTATTTTCCATCGGAAC 57.243 30.769 0.00 0.00 41.87 3.62
180 181 9.771534 AAATTTTCTTGTTATTTTCCATCGGAA 57.228 25.926 0.00 0.00 40.27 4.30
181 182 9.202273 CAAATTTTCTTGTTATTTTCCATCGGA 57.798 29.630 0.00 0.00 0.00 4.55
182 183 8.442384 CCAAATTTTCTTGTTATTTTCCATCGG 58.558 33.333 0.00 0.00 0.00 4.18
183 184 9.202273 TCCAAATTTTCTTGTTATTTTCCATCG 57.798 29.630 0.00 0.00 0.00 3.84
186 187 9.898152 ACTTCCAAATTTTCTTGTTATTTTCCA 57.102 25.926 0.00 0.00 0.00 3.53
200 201 9.971922 CAGTGAAATCTTAGACTTCCAAATTTT 57.028 29.630 0.85 0.00 0.00 1.82
201 202 9.354673 TCAGTGAAATCTTAGACTTCCAAATTT 57.645 29.630 0.85 0.00 0.00 1.82
202 203 8.924511 TCAGTGAAATCTTAGACTTCCAAATT 57.075 30.769 0.85 0.00 0.00 1.82
203 204 8.924511 TTCAGTGAAATCTTAGACTTCCAAAT 57.075 30.769 2.20 0.00 0.00 2.32
204 205 8.746052 TTTCAGTGAAATCTTAGACTTCCAAA 57.254 30.769 14.35 0.00 0.00 3.28
205 206 7.993183 ACTTTCAGTGAAATCTTAGACTTCCAA 59.007 33.333 18.35 0.00 30.85 3.53
206 207 7.509546 ACTTTCAGTGAAATCTTAGACTTCCA 58.490 34.615 18.35 0.00 30.85 3.53
207 208 7.657761 TGACTTTCAGTGAAATCTTAGACTTCC 59.342 37.037 18.35 0.00 30.85 3.46
208 209 8.594881 TGACTTTCAGTGAAATCTTAGACTTC 57.405 34.615 18.35 0.00 30.85 3.01
209 210 8.964476 TTGACTTTCAGTGAAATCTTAGACTT 57.036 30.769 18.35 0.00 30.85 3.01
210 211 8.964476 TTTGACTTTCAGTGAAATCTTAGACT 57.036 30.769 18.35 0.00 26.57 3.24
215 216 9.918630 CCATATTTTGACTTTCAGTGAAATCTT 57.081 29.630 18.35 6.50 31.71 2.40
216 217 9.082313 ACCATATTTTGACTTTCAGTGAAATCT 57.918 29.630 18.35 7.15 31.71 2.40
217 218 9.132521 CACCATATTTTGACTTTCAGTGAAATC 57.867 33.333 18.35 16.57 31.71 2.17
218 219 7.599998 GCACCATATTTTGACTTTCAGTGAAAT 59.400 33.333 18.35 9.11 31.71 2.17
219 220 6.922957 GCACCATATTTTGACTTTCAGTGAAA 59.077 34.615 17.16 17.16 29.65 2.69
220 221 6.446318 GCACCATATTTTGACTTTCAGTGAA 58.554 36.000 0.08 0.08 0.00 3.18
221 222 5.334802 CGCACCATATTTTGACTTTCAGTGA 60.335 40.000 0.00 0.00 0.00 3.41
222 223 4.853196 CGCACCATATTTTGACTTTCAGTG 59.147 41.667 0.00 0.00 0.00 3.66
223 224 4.759693 TCGCACCATATTTTGACTTTCAGT 59.240 37.500 0.00 0.00 0.00 3.41
224 225 5.295431 TCGCACCATATTTTGACTTTCAG 57.705 39.130 0.00 0.00 0.00 3.02
225 226 5.895636 ATCGCACCATATTTTGACTTTCA 57.104 34.783 0.00 0.00 0.00 2.69
226 227 6.092748 ACAATCGCACCATATTTTGACTTTC 58.907 36.000 0.00 0.00 0.00 2.62
227 228 6.024552 ACAATCGCACCATATTTTGACTTT 57.975 33.333 0.00 0.00 0.00 2.66
228 229 5.640732 GACAATCGCACCATATTTTGACTT 58.359 37.500 0.00 0.00 0.00 3.01
229 230 4.201812 CGACAATCGCACCATATTTTGACT 60.202 41.667 0.00 0.00 31.14 3.41
230 231 4.028383 CGACAATCGCACCATATTTTGAC 58.972 43.478 0.00 0.00 31.14 3.18
231 232 4.271590 CGACAATCGCACCATATTTTGA 57.728 40.909 0.00 0.00 31.14 2.69
244 245 3.997319 TTTCAAGAGATGCGACAATCG 57.003 42.857 0.00 0.00 43.89 3.34
245 246 5.227238 ACATTTCAAGAGATGCGACAATC 57.773 39.130 0.95 0.00 0.00 2.67
246 247 6.238566 CCATACATTTCAAGAGATGCGACAAT 60.239 38.462 0.95 0.00 0.00 2.71
247 248 5.065090 CCATACATTTCAAGAGATGCGACAA 59.935 40.000 0.95 0.00 0.00 3.18
248 249 4.571984 CCATACATTTCAAGAGATGCGACA 59.428 41.667 0.95 0.00 0.00 4.35
249 250 4.572389 ACCATACATTTCAAGAGATGCGAC 59.428 41.667 0.95 0.00 0.00 5.19
250 251 4.769688 ACCATACATTTCAAGAGATGCGA 58.230 39.130 0.95 0.00 0.00 5.10
251 252 6.791887 ATACCATACATTTCAAGAGATGCG 57.208 37.500 0.95 0.00 0.00 4.73
300 301 8.584157 TGAAATGCATGGTACTACAAAAGAATT 58.416 29.630 0.00 0.00 0.00 2.17
301 302 8.121305 TGAAATGCATGGTACTACAAAAGAAT 57.879 30.769 0.00 0.00 0.00 2.40
302 303 7.517614 TGAAATGCATGGTACTACAAAAGAA 57.482 32.000 0.00 0.00 0.00 2.52
303 304 7.446931 TCTTGAAATGCATGGTACTACAAAAGA 59.553 33.333 0.00 0.00 0.00 2.52
304 305 7.592938 TCTTGAAATGCATGGTACTACAAAAG 58.407 34.615 0.00 0.00 0.00 2.27
305 306 7.446931 TCTCTTGAAATGCATGGTACTACAAAA 59.553 33.333 0.00 0.00 0.00 2.44
306 307 6.939730 TCTCTTGAAATGCATGGTACTACAAA 59.060 34.615 0.00 0.00 0.00 2.83
307 308 6.472016 TCTCTTGAAATGCATGGTACTACAA 58.528 36.000 0.00 0.00 0.00 2.41
308 309 6.048732 TCTCTTGAAATGCATGGTACTACA 57.951 37.500 0.00 0.00 0.00 2.74
309 310 6.985188 TTCTCTTGAAATGCATGGTACTAC 57.015 37.500 0.00 0.00 0.00 2.73
325 326 9.617975 GACCAAGTCAAGATAAAATTTCTCTTG 57.382 33.333 24.25 24.25 44.59 3.02
326 327 9.354673 TGACCAAGTCAAGATAAAATTTCTCTT 57.645 29.630 9.17 9.17 39.78 2.85
327 328 8.924511 TGACCAAGTCAAGATAAAATTTCTCT 57.075 30.769 0.00 0.00 39.78 3.10
328 329 9.565213 CATGACCAAGTCAAGATAAAATTTCTC 57.435 33.333 0.91 0.00 45.96 2.87
329 330 9.082313 ACATGACCAAGTCAAGATAAAATTTCT 57.918 29.630 0.00 0.00 45.96 2.52
330 331 9.696917 AACATGACCAAGTCAAGATAAAATTTC 57.303 29.630 0.00 0.00 45.96 2.17
361 362 4.035278 ACCGAGTCAATTTTCGCAAAAA 57.965 36.364 0.00 0.00 38.66 1.94
362 363 3.065510 TGACCGAGTCAATTTTCGCAAAA 59.934 39.130 4.51 0.00 39.78 2.44
363 364 2.614520 TGACCGAGTCAATTTTCGCAAA 59.385 40.909 4.51 0.00 39.78 3.68
364 365 2.214347 TGACCGAGTCAATTTTCGCAA 58.786 42.857 4.51 0.00 39.78 4.85
365 366 1.872388 TGACCGAGTCAATTTTCGCA 58.128 45.000 4.51 0.00 39.78 5.10
366 367 2.159627 ACATGACCGAGTCAATTTTCGC 59.840 45.455 0.00 0.00 45.96 4.70
367 368 4.404507 AACATGACCGAGTCAATTTTCG 57.595 40.909 0.00 0.00 45.96 3.46
368 369 5.642063 TCCTAACATGACCGAGTCAATTTTC 59.358 40.000 0.00 0.00 45.96 2.29
369 370 5.411669 GTCCTAACATGACCGAGTCAATTTT 59.588 40.000 0.00 6.95 45.96 1.82
370 371 4.935808 GTCCTAACATGACCGAGTCAATTT 59.064 41.667 0.00 8.84 45.96 1.82
371 372 4.504858 GTCCTAACATGACCGAGTCAATT 58.495 43.478 0.00 10.02 45.96 2.32
372 373 3.428999 CGTCCTAACATGACCGAGTCAAT 60.429 47.826 0.00 4.10 45.96 2.57
386 387 7.333672 ACAAGGAAACATAGAATTCGTCCTAAC 59.666 37.037 0.00 0.00 32.85 2.34
391 392 7.829378 ACTACAAGGAAACATAGAATTCGTC 57.171 36.000 0.00 0.00 0.00 4.20
487 489 1.690219 ATCCAGACGAGCATCCCCAC 61.690 60.000 0.00 0.00 0.00 4.61
488 490 0.105709 TATCCAGACGAGCATCCCCA 60.106 55.000 0.00 0.00 0.00 4.96
489 491 0.318762 GTATCCAGACGAGCATCCCC 59.681 60.000 0.00 0.00 0.00 4.81
490 492 1.000283 CTGTATCCAGACGAGCATCCC 60.000 57.143 0.00 0.00 41.50 3.85
491 493 1.957177 TCTGTATCCAGACGAGCATCC 59.043 52.381 0.00 0.00 42.80 3.51
502 504 6.127054 CCAAAAGACTGGAGTATCTGTATCCA 60.127 42.308 0.00 0.00 40.80 3.41
503 505 6.127026 ACCAAAAGACTGGAGTATCTGTATCC 60.127 42.308 0.00 0.00 38.96 2.59
504 506 6.879400 ACCAAAAGACTGGAGTATCTGTATC 58.121 40.000 0.00 0.00 38.96 2.24
505 507 6.875972 ACCAAAAGACTGGAGTATCTGTAT 57.124 37.500 0.00 0.00 38.96 2.29
506 508 6.681729 AACCAAAAGACTGGAGTATCTGTA 57.318 37.500 0.00 0.00 38.96 2.74
507 509 5.568620 AACCAAAAGACTGGAGTATCTGT 57.431 39.130 0.00 0.00 38.96 3.41
508 510 7.607991 ACATAAACCAAAAGACTGGAGTATCTG 59.392 37.037 0.00 0.00 38.96 2.90
509 511 7.690256 ACATAAACCAAAAGACTGGAGTATCT 58.310 34.615 0.00 0.00 38.96 1.98
516 518 7.029563 GCTGAATACATAAACCAAAAGACTGG 58.970 38.462 0.00 0.00 42.68 4.00
581 583 2.435059 GGCTTGCCGAGGTCAGAC 60.435 66.667 0.00 0.00 0.00 3.51
594 596 2.041819 CTAGGAGGGACCGGGCTT 60.042 66.667 7.57 0.00 44.74 4.35
775 1124 1.192146 ACCCGCCCGCAGTATGATAT 61.192 55.000 0.00 0.00 39.69 1.63
838 1187 3.010250 GGGTCCTTCCTGTAAAAGACCAT 59.990 47.826 9.05 0.00 40.24 3.55
884 1234 6.992123 TGTATCGAGGTCCTAGTCGTAAATTA 59.008 38.462 0.00 0.00 37.46 1.40
906 1256 9.015367 GGACTATATCATAGTTTCTCAGCTGTA 57.985 37.037 14.67 0.00 0.00 2.74
1179 1530 2.738480 GCGTCCATATACCGCCCA 59.262 61.111 0.00 0.00 41.50 5.36
1902 2253 4.391155 AGAAAAAGCACCGTACCACATAA 58.609 39.130 0.00 0.00 0.00 1.90
1996 2347 1.039068 CATCACCAACCACAAAGGCA 58.961 50.000 0.00 0.00 43.14 4.75
2069 2420 9.657419 CCAAATTAAGCTTCCTGTTCAATTAAT 57.343 29.630 0.00 0.00 0.00 1.40
2080 2431 5.016831 CCTTACCACCAAATTAAGCTTCCT 58.983 41.667 0.00 0.00 0.00 3.36
2099 2450 1.473550 ACCCAACCCCCATTTCCTTA 58.526 50.000 0.00 0.00 0.00 2.69
2154 2506 0.034896 GAAGTTCTCCCAGTTCGCCA 59.965 55.000 0.00 0.00 0.00 5.69
2213 2565 3.557577 TGCAAATCGAACAATCCACAG 57.442 42.857 0.00 0.00 0.00 3.66
2298 2650 6.236409 GCATCTTCAATCTATCAGGGAATGA 58.764 40.000 0.00 0.00 43.70 2.57
2463 2839 1.597742 CCCAATAACTCGCAGATGGG 58.402 55.000 0.00 0.00 41.38 4.00
2485 2861 9.305925 GAACCCAAGATATTGATGAACAAAATC 57.694 33.333 0.54 0.00 42.03 2.17
2874 3257 1.381867 ACATCCCACTCAAATCCCCA 58.618 50.000 0.00 0.00 0.00 4.96
2876 3259 3.933861 AGTACATCCCACTCAAATCCC 57.066 47.619 0.00 0.00 0.00 3.85
2880 3263 4.346709 TCACTGAAGTACATCCCACTCAAA 59.653 41.667 0.00 0.00 0.00 2.69
2895 3278 8.539770 ACACTCAGTTAAATACATCACTGAAG 57.460 34.615 2.71 1.77 43.88 3.02
3094 3477 1.754745 GAGGGCGGCAATATCCTCA 59.245 57.895 12.47 0.00 43.78 3.86
3214 3597 7.728083 AGATAGTATAGGCTCTTGTTGATCTGT 59.272 37.037 0.00 0.00 0.00 3.41
3295 3678 4.132336 CCACTATGATGACCAACATGGAG 58.868 47.826 9.79 3.30 40.96 3.86
3317 3700 2.310538 CAACCTTATGATGGGGAAGCC 58.689 52.381 0.00 0.00 0.00 4.35
3318 3701 3.018423 ACAACCTTATGATGGGGAAGC 57.982 47.619 0.00 0.00 0.00 3.86
3326 3709 4.658063 TGAACGGGAAACAACCTTATGAT 58.342 39.130 0.00 0.00 0.00 2.45
3331 3714 1.960689 CCATGAACGGGAAACAACCTT 59.039 47.619 0.00 0.00 0.00 3.50
3369 3752 1.947456 GCGTAAAATAGCAGGGAAGGG 59.053 52.381 0.00 0.00 0.00 3.95
3399 3782 0.881118 GCACACCACCGACATTCATT 59.119 50.000 0.00 0.00 0.00 2.57
3504 3887 1.956477 GGGAACAGAAAGCAAAGCAGA 59.044 47.619 0.00 0.00 0.00 4.26
3680 4066 7.615365 ACATAAGAAGGTTCCATTCATGCTAAA 59.385 33.333 0.00 0.00 0.00 1.85
3754 4140 0.039618 GAAAGCATCCCCCAGGTGAA 59.960 55.000 0.00 0.00 0.00 3.18
3797 4183 0.521735 GCCAATGAAACACCTCGGAC 59.478 55.000 0.00 0.00 0.00 4.79
3903 4289 4.568152 GTTGTGAACCAAAGCTGTACAT 57.432 40.909 0.00 0.00 34.07 2.29
4067 4462 3.117888 ACAGACACCTGAAGAACAATGGT 60.118 43.478 0.00 0.00 43.02 3.55
4097 4492 8.622157 AGAAAAATCATGCAACTATGATGAGAG 58.378 33.333 1.39 0.00 44.74 3.20
4130 4525 4.081406 TGTTGGTTTCTTCCATGATCCAG 58.919 43.478 0.00 0.00 37.33 3.86
4223 4660 1.228459 AAGCTTTTGGACCGGGACC 60.228 57.895 6.32 8.70 0.00 4.46
4240 4677 7.119262 GGAAGAAACCGTGAATATTCTGAAGAA 59.881 37.037 16.24 0.00 38.56 2.52
4317 4754 6.478344 GTGCAAATTTGGAATAACTGTGTTGA 59.522 34.615 19.47 0.00 0.00 3.18
4429 4867 4.397420 TGCACTTCAGATGTACCAATTGT 58.603 39.130 4.43 0.00 0.00 2.71
4448 4886 0.313672 GGCGTGGAAAGTGAAATGCA 59.686 50.000 0.00 0.00 0.00 3.96
4530 4975 3.689161 CCAAATTCGCATCACTAGGAACA 59.311 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.