Multiple sequence alignment - TraesCS7B01G209300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G209300 chr7B 100.000 4120 0 0 1 4120 382285388 382281269 0.000000e+00 7609.0
1 TraesCS7B01G209300 chr7B 95.142 247 11 1 3875 4120 304087551 304087797 4.990000e-104 388.0
2 TraesCS7B01G209300 chr7B 94.737 247 12 1 3875 4120 289653643 289653889 2.320000e-102 383.0
3 TraesCS7B01G209300 chr7D 96.233 3371 78 21 1 3337 387226700 387223345 0.000000e+00 5476.0
4 TraesCS7B01G209300 chr7A 96.175 3033 78 21 291 3299 437074141 437071123 0.000000e+00 4924.0
5 TraesCS7B01G209300 chr7A 94.898 294 7 4 1 294 437076988 437076703 1.750000e-123 453.0
6 TraesCS7B01G209300 chr7A 92.982 57 3 1 3786 3841 437070746 437070690 9.490000e-12 82.4
7 TraesCS7B01G209300 chr2B 95.238 252 9 3 3872 4120 209257863 209257612 2.980000e-106 396.0
8 TraesCS7B01G209300 chr1B 95.200 250 10 2 3872 4120 269261814 269261566 1.070000e-105 394.0
9 TraesCS7B01G209300 chr1B 93.725 255 11 3 3871 4120 449250762 449250508 1.080000e-100 377.0
10 TraesCS7B01G209300 chr5B 94.186 258 12 3 3864 4120 629889657 629889402 1.390000e-104 390.0
11 TraesCS7B01G209300 chr5B 94.378 249 12 2 3873 4120 9839090 9839337 8.360000e-102 381.0
12 TraesCS7B01G209300 chr4B 94.800 250 12 1 3872 4120 113392244 113391995 4.990000e-104 388.0
13 TraesCS7B01G209300 chrUn 94.758 248 11 2 3874 4120 401125181 401124935 6.460000e-103 385.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G209300 chr7B 382281269 382285388 4119 True 7609.0 7609 100.000 1 4120 1 chr7B.!!$R1 4119
1 TraesCS7B01G209300 chr7D 387223345 387226700 3355 True 5476.0 5476 96.233 1 3337 1 chr7D.!!$R1 3336
2 TraesCS7B01G209300 chr7A 437070690 437076988 6298 True 1819.8 4924 94.685 1 3841 3 chr7A.!!$R1 3840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 2968 0.543749 AGCAGGGAGTTAGATGTGGC 59.456 55.0 0.00 0.0 0.00 5.01 F
1230 3797 0.748450 CCATTGATGCCATCACCACC 59.252 55.0 6.94 0.0 39.39 4.61 F
1787 4354 0.682209 CACAGGAAGGCAAGGGATGG 60.682 60.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 4354 1.028868 GGATGCACCACTCTTCCTGC 61.029 60.0 0.00 0.0 38.79 4.85 R
2816 5400 0.539051 AGGGCAGGATCTTGAAGTCG 59.461 55.0 9.36 0.0 0.00 4.18 R
3484 6275 0.035152 TTGACCCTCGCTTGATGCAT 60.035 50.0 0.00 0.0 43.06 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 215 2.770164 ACAGGAGTATGTTCTGCACC 57.230 50.000 0.00 0.00 32.19 5.01
225 226 0.880278 TTCTGCACCGAGTGAAGCAC 60.880 55.000 8.04 0.00 38.98 4.40
227 228 1.563435 CTGCACCGAGTGAAGCACTG 61.563 60.000 4.60 0.00 45.44 3.66
228 229 1.300931 GCACCGAGTGAAGCACTGA 60.301 57.895 4.60 0.00 45.44 3.41
229 230 0.880278 GCACCGAGTGAAGCACTGAA 60.880 55.000 4.60 0.00 45.44 3.02
230 231 1.143305 CACCGAGTGAAGCACTGAAG 58.857 55.000 4.60 0.00 45.44 3.02
231 232 0.601311 ACCGAGTGAAGCACTGAAGC 60.601 55.000 4.60 0.00 45.44 3.86
232 233 0.601046 CCGAGTGAAGCACTGAAGCA 60.601 55.000 4.60 0.00 45.44 3.91
353 2919 0.708802 AGACTTACGGGGAGAAGGGA 59.291 55.000 0.00 0.00 0.00 4.20
402 2968 0.543749 AGCAGGGAGTTAGATGTGGC 59.456 55.000 0.00 0.00 0.00 5.01
531 3097 7.696755 TGCATGCTAAATATATTATGCCTTCG 58.303 34.615 20.33 9.21 39.96 3.79
854 3421 7.106239 AGGTGAGATGTTTAACCATACAGAAG 58.894 38.462 0.00 0.00 35.01 2.85
1149 3716 2.110899 TCTCCAGTTGAGTCCTCTTCCT 59.889 50.000 0.00 0.00 42.12 3.36
1230 3797 0.748450 CCATTGATGCCATCACCACC 59.252 55.000 6.94 0.00 39.39 4.61
1425 3992 0.890683 CCAGGCGGCTTGAATCTTTT 59.109 50.000 9.66 0.00 0.00 2.27
1687 4254 4.980592 TGCCTGCCTGGAGGTGGA 62.981 66.667 6.57 0.00 38.35 4.02
1787 4354 0.682209 CACAGGAAGGCAAGGGATGG 60.682 60.000 0.00 0.00 0.00 3.51
1890 4460 2.648059 CCTGGTGAGAATGGGAATGAC 58.352 52.381 0.00 0.00 0.00 3.06
2027 4597 3.501828 GTCACCATTGCATGTGTTAGTCA 59.498 43.478 10.25 0.00 0.00 3.41
2040 4610 8.589629 GCATGTGTTAGTCATGAAATTGATTTC 58.410 33.333 0.00 9.05 43.47 2.17
2065 4635 6.195244 CGCTTCATAGTTGTTGTGCAATTATC 59.805 38.462 0.00 0.00 37.74 1.75
2104 4674 6.129194 GCTGACTACCAAAAAGTTATTTTGCG 60.129 38.462 7.88 4.96 38.62 4.85
2112 4682 5.767816 AAAAGTTATTTTGCGACACTCCT 57.232 34.783 0.00 0.00 37.24 3.69
2209 4779 6.361748 CAGCAGAGTTTGTAATTTGCTCTTTC 59.638 38.462 0.00 0.00 39.66 2.62
2262 4835 2.544267 ACGAGTAGTTGTTCTTGCTTGC 59.456 45.455 0.00 0.00 0.00 4.01
2264 4837 3.187227 CGAGTAGTTGTTCTTGCTTGCAT 59.813 43.478 0.00 0.00 0.00 3.96
2435 5019 0.873312 ACATGATCGCTGCTGCTACG 60.873 55.000 14.03 4.81 36.97 3.51
2499 5083 4.698625 AGAACCCCCGCGTCCTCT 62.699 66.667 4.92 0.00 0.00 3.69
2526 5110 4.742649 AGGAGGAGCTCGACGCCA 62.743 66.667 13.63 0.00 41.55 5.69
2648 5232 2.105128 CTGATCCCGCACGAGTCC 59.895 66.667 0.00 0.00 0.00 3.85
2816 5400 2.191641 GAGATCAGCCACCTGCCC 59.808 66.667 0.00 0.00 42.71 5.36
3185 5793 7.926674 TCTGAGATATTTCAATGCAGAACAA 57.073 32.000 0.00 0.00 0.00 2.83
3186 5794 8.515695 TCTGAGATATTTCAATGCAGAACAAT 57.484 30.769 0.00 0.00 0.00 2.71
3223 5831 3.444029 TCCAGATCATTCACTGTCTCCA 58.556 45.455 0.00 0.00 32.93 3.86
3257 5868 8.600625 TCTTGCGTTCATATGTGTAACTAATTC 58.399 33.333 1.90 0.00 38.04 2.17
3276 5887 4.604843 TTCGATCTTGTTCATGCATGAC 57.395 40.909 28.72 21.92 36.36 3.06
3303 5914 8.020819 CAGAGATAGTAGCTTTGTAGTAGATGC 58.979 40.741 0.00 0.00 0.00 3.91
3320 5931 8.183104 AGTAGATGCATGCACTTATCTTACTA 57.817 34.615 25.37 11.73 32.54 1.82
3327 5938 6.017605 GCATGCACTTATCTTACTAATGCACT 60.018 38.462 14.21 0.00 43.71 4.40
3337 5948 6.472016 TCTTACTAATGCACTGAACCATTGA 58.528 36.000 0.00 0.00 33.93 2.57
3342 6133 0.955428 GCACTGAACCATTGAGGCGA 60.955 55.000 0.00 0.00 43.14 5.54
3358 6149 1.067635 GGCGAGCAACCATGACAAAAT 60.068 47.619 0.00 0.00 0.00 1.82
3379 6170 1.135523 GCGCTGCAGGCTAAGAAAC 59.864 57.895 17.12 0.00 39.13 2.78
3392 6183 6.596888 CAGGCTAAGAAACAATCATCTTCTGA 59.403 38.462 0.00 0.00 37.16 3.27
3409 6200 1.462283 CTGATGCAGAAGTTGTCGTGG 59.538 52.381 0.00 0.00 32.44 4.94
3421 6212 0.392863 TGTCGTGGGCTTCATCCATG 60.393 55.000 0.00 0.00 41.41 3.66
3423 6214 1.825191 CGTGGGCTTCATCCATGGG 60.825 63.158 13.02 0.00 37.58 4.00
3425 6216 0.033208 GTGGGCTTCATCCATGGGAA 60.033 55.000 13.02 7.59 36.58 3.97
3426 6217 0.709397 TGGGCTTCATCCATGGGAAA 59.291 50.000 13.02 3.10 34.34 3.13
3427 6218 1.114627 GGGCTTCATCCATGGGAAAC 58.885 55.000 13.02 3.79 34.34 2.78
3428 6219 0.740737 GGCTTCATCCATGGGAAACG 59.259 55.000 13.02 0.00 34.34 3.60
3431 6222 2.094675 CTTCATCCATGGGAAACGCTT 58.905 47.619 13.02 0.00 34.34 4.68
3437 6228 2.158813 TCCATGGGAAACGCTTCCTATC 60.159 50.000 16.78 1.80 47.00 2.08
3438 6229 2.421388 CCATGGGAAACGCTTCCTATCA 60.421 50.000 16.78 7.43 47.00 2.15
3439 6230 3.278574 CATGGGAAACGCTTCCTATCAA 58.721 45.455 16.78 0.00 47.00 2.57
3440 6231 3.065371 CATGGGAAACGCTTCCTATCAAC 59.935 47.826 16.78 0.40 47.00 3.18
3442 6233 1.664151 GGAAACGCTTCCTATCAACCG 59.336 52.381 10.41 0.00 46.80 4.44
3443 6234 1.664151 GAAACGCTTCCTATCAACCGG 59.336 52.381 0.00 0.00 0.00 5.28
3444 6235 0.743345 AACGCTTCCTATCAACCGGC 60.743 55.000 0.00 0.00 0.00 6.13
3445 6236 2.237751 CGCTTCCTATCAACCGGCG 61.238 63.158 0.00 0.00 35.54 6.46
3446 6237 1.887707 GCTTCCTATCAACCGGCGG 60.888 63.158 27.06 27.06 0.00 6.13
3447 6238 1.820581 CTTCCTATCAACCGGCGGA 59.179 57.895 35.78 11.41 0.00 5.54
3450 6241 1.372997 CCTATCAACCGGCGGATCG 60.373 63.158 35.78 19.76 0.00 3.69
3481 6272 2.124570 CGCCACCTTCCCTGGATG 60.125 66.667 0.00 0.00 0.00 3.51
3484 6275 1.852157 GCCACCTTCCCTGGATGACA 61.852 60.000 0.00 0.00 0.00 3.58
3485 6276 0.921896 CCACCTTCCCTGGATGACAT 59.078 55.000 0.00 0.00 0.00 3.06
3486 6277 1.409241 CCACCTTCCCTGGATGACATG 60.409 57.143 0.00 0.00 0.00 3.21
3488 6279 0.256752 CCTTCCCTGGATGACATGCA 59.743 55.000 9.47 9.47 0.00 3.96
3489 6280 1.133575 CCTTCCCTGGATGACATGCAT 60.134 52.381 10.31 0.00 40.77 3.96
3503 6294 4.301505 GCATCAAGCGAGGGTCAA 57.698 55.556 0.00 0.00 0.00 3.18
3504 6295 1.796796 GCATCAAGCGAGGGTCAAC 59.203 57.895 0.00 0.00 0.00 3.18
3505 6296 1.970917 GCATCAAGCGAGGGTCAACG 61.971 60.000 0.00 0.00 0.00 4.10
3506 6297 0.670546 CATCAAGCGAGGGTCAACGT 60.671 55.000 0.00 0.00 0.00 3.99
3507 6298 0.892755 ATCAAGCGAGGGTCAACGTA 59.107 50.000 0.00 0.00 0.00 3.57
3508 6299 0.038892 TCAAGCGAGGGTCAACGTAC 60.039 55.000 0.00 0.00 0.00 3.67
3509 6300 1.012486 CAAGCGAGGGTCAACGTACC 61.012 60.000 0.00 0.00 38.94 3.34
3510 6301 1.466025 AAGCGAGGGTCAACGTACCA 61.466 55.000 9.65 0.00 41.67 3.25
3511 6302 1.217244 GCGAGGGTCAACGTACCAT 59.783 57.895 9.65 1.84 41.67 3.55
3512 6303 0.804933 GCGAGGGTCAACGTACCATC 60.805 60.000 11.30 11.30 44.89 3.51
3513 6304 0.179119 CGAGGGTCAACGTACCATCC 60.179 60.000 14.71 0.05 45.43 3.51
3514 6305 1.192428 GAGGGTCAACGTACCATCCT 58.808 55.000 10.40 2.11 43.06 3.24
3515 6306 1.553704 GAGGGTCAACGTACCATCCTT 59.446 52.381 10.40 0.00 43.06 3.36
3516 6307 1.553704 AGGGTCAACGTACCATCCTTC 59.446 52.381 9.65 0.00 41.67 3.46
3517 6308 1.276989 GGGTCAACGTACCATCCTTCA 59.723 52.381 9.65 0.00 41.67 3.02
3518 6309 2.093128 GGGTCAACGTACCATCCTTCAT 60.093 50.000 9.65 0.00 41.67 2.57
3519 6310 2.936498 GGTCAACGTACCATCCTTCATG 59.064 50.000 2.50 0.00 39.50 3.07
3520 6311 2.351726 GTCAACGTACCATCCTTCATGC 59.648 50.000 0.00 0.00 0.00 4.06
3521 6312 2.027653 TCAACGTACCATCCTTCATGCA 60.028 45.455 0.00 0.00 0.00 3.96
3522 6313 2.746904 CAACGTACCATCCTTCATGCAA 59.253 45.455 0.00 0.00 0.00 4.08
3523 6314 3.281727 ACGTACCATCCTTCATGCAAT 57.718 42.857 0.00 0.00 0.00 3.56
3524 6315 4.415881 ACGTACCATCCTTCATGCAATA 57.584 40.909 0.00 0.00 0.00 1.90
3525 6316 4.380531 ACGTACCATCCTTCATGCAATAG 58.619 43.478 0.00 0.00 0.00 1.73
3526 6317 3.748048 CGTACCATCCTTCATGCAATAGG 59.252 47.826 0.00 0.00 0.00 2.57
3527 6318 4.503123 CGTACCATCCTTCATGCAATAGGA 60.503 45.833 14.79 14.79 41.99 2.94
3528 6319 4.096190 ACCATCCTTCATGCAATAGGAG 57.904 45.455 16.76 9.24 41.15 3.69
3529 6320 2.818432 CCATCCTTCATGCAATAGGAGC 59.182 50.000 16.76 0.00 41.15 4.70
3530 6321 3.498121 CCATCCTTCATGCAATAGGAGCT 60.498 47.826 16.76 0.00 41.15 4.09
3531 6322 4.263199 CCATCCTTCATGCAATAGGAGCTA 60.263 45.833 16.76 0.00 41.15 3.32
3532 6323 5.498393 CATCCTTCATGCAATAGGAGCTAT 58.502 41.667 16.76 2.00 41.15 2.97
3533 6324 4.903054 TCCTTCATGCAATAGGAGCTATG 58.097 43.478 9.93 0.00 33.23 2.23
3534 6325 3.439476 CCTTCATGCAATAGGAGCTATGC 59.561 47.826 6.32 0.00 0.00 3.14
3535 6326 4.325119 CTTCATGCAATAGGAGCTATGCT 58.675 43.478 0.00 0.00 43.88 3.79
3536 6327 4.362470 TCATGCAATAGGAGCTATGCTT 57.638 40.909 0.00 1.70 39.88 3.91
3537 6328 4.321718 TCATGCAATAGGAGCTATGCTTC 58.678 43.478 0.00 0.00 39.88 3.86
3539 6330 3.736720 TGCAATAGGAGCTATGCTTCTG 58.263 45.455 10.37 0.00 45.21 3.02
3540 6331 3.389002 TGCAATAGGAGCTATGCTTCTGA 59.611 43.478 10.37 0.00 45.21 3.27
3541 6332 4.141642 TGCAATAGGAGCTATGCTTCTGAA 60.142 41.667 10.37 0.00 45.21 3.02
3542 6333 4.818546 GCAATAGGAGCTATGCTTCTGAAA 59.181 41.667 10.37 0.00 45.21 2.69
3543 6334 5.277731 GCAATAGGAGCTATGCTTCTGAAAC 60.278 44.000 10.37 0.00 45.21 2.78
3544 6335 3.988976 AGGAGCTATGCTTCTGAAACA 57.011 42.857 0.00 0.00 43.77 2.83
3545 6336 4.500499 AGGAGCTATGCTTCTGAAACAT 57.500 40.909 10.75 10.75 43.77 2.71
3546 6337 5.620738 AGGAGCTATGCTTCTGAAACATA 57.379 39.130 11.72 11.72 43.77 2.29
3547 6338 5.994250 AGGAGCTATGCTTCTGAAACATAA 58.006 37.500 12.92 0.97 43.77 1.90
3548 6339 6.054295 AGGAGCTATGCTTCTGAAACATAAG 58.946 40.000 12.92 9.16 43.77 1.73
3549 6340 5.819901 GGAGCTATGCTTCTGAAACATAAGT 59.180 40.000 12.92 5.13 39.88 2.24
3550 6341 6.238320 GGAGCTATGCTTCTGAAACATAAGTG 60.238 42.308 12.92 5.12 39.88 3.16
3551 6342 5.587844 AGCTATGCTTCTGAAACATAAGTGG 59.412 40.000 12.92 4.84 33.89 4.00
3552 6343 5.355350 GCTATGCTTCTGAAACATAAGTGGT 59.645 40.000 12.92 0.00 0.00 4.16
3553 6344 5.633830 ATGCTTCTGAAACATAAGTGGTG 57.366 39.130 4.55 0.00 0.00 4.17
3554 6345 4.460263 TGCTTCTGAAACATAAGTGGTGT 58.540 39.130 0.00 0.00 0.00 4.16
3555 6346 4.887071 TGCTTCTGAAACATAAGTGGTGTT 59.113 37.500 0.00 0.00 41.28 3.32
3556 6347 5.215160 GCTTCTGAAACATAAGTGGTGTTG 58.785 41.667 0.00 0.00 39.57 3.33
3557 6348 4.829064 TCTGAAACATAAGTGGTGTTGC 57.171 40.909 0.00 0.00 39.57 4.17
3558 6349 4.203226 TCTGAAACATAAGTGGTGTTGCA 58.797 39.130 0.27 0.27 41.60 4.08
3559 6350 4.642437 TCTGAAACATAAGTGGTGTTGCAA 59.358 37.500 0.00 0.00 42.83 4.08
3560 6351 5.301551 TCTGAAACATAAGTGGTGTTGCAAT 59.698 36.000 0.59 0.00 42.83 3.56
3561 6352 5.288015 TGAAACATAAGTGGTGTTGCAATG 58.712 37.500 0.59 0.00 41.07 2.82
3562 6353 3.940209 ACATAAGTGGTGTTGCAATGG 57.060 42.857 0.59 0.00 0.00 3.16
3563 6354 3.230134 ACATAAGTGGTGTTGCAATGGT 58.770 40.909 0.59 0.00 0.00 3.55
3564 6355 3.255642 ACATAAGTGGTGTTGCAATGGTC 59.744 43.478 0.59 0.00 0.00 4.02
3565 6356 2.071778 AAGTGGTGTTGCAATGGTCT 57.928 45.000 0.59 0.00 0.00 3.85
3566 6357 2.949177 AGTGGTGTTGCAATGGTCTA 57.051 45.000 0.59 0.00 0.00 2.59
3567 6358 2.504367 AGTGGTGTTGCAATGGTCTAC 58.496 47.619 0.59 2.27 0.00 2.59
3568 6359 1.196808 GTGGTGTTGCAATGGTCTACG 59.803 52.381 0.59 0.00 0.00 3.51
3569 6360 1.070914 TGGTGTTGCAATGGTCTACGA 59.929 47.619 0.59 0.00 0.00 3.43
3570 6361 2.290008 TGGTGTTGCAATGGTCTACGAT 60.290 45.455 0.59 0.00 0.00 3.73
3571 6362 2.095853 GGTGTTGCAATGGTCTACGATG 59.904 50.000 0.59 0.00 0.00 3.84
3572 6363 2.095853 GTGTTGCAATGGTCTACGATGG 59.904 50.000 0.59 0.00 0.00 3.51
3573 6364 2.027653 TGTTGCAATGGTCTACGATGGA 60.028 45.455 0.59 0.00 0.00 3.41
3574 6365 3.206150 GTTGCAATGGTCTACGATGGAT 58.794 45.455 0.59 0.00 0.00 3.41
3575 6366 3.558931 TGCAATGGTCTACGATGGATT 57.441 42.857 0.00 0.00 0.00 3.01
3576 6367 3.884895 TGCAATGGTCTACGATGGATTT 58.115 40.909 0.00 0.00 0.00 2.17
3577 6368 5.029807 TGCAATGGTCTACGATGGATTTA 57.970 39.130 0.00 0.00 0.00 1.40
3578 6369 5.620206 TGCAATGGTCTACGATGGATTTAT 58.380 37.500 0.00 0.00 0.00 1.40
3579 6370 5.469760 TGCAATGGTCTACGATGGATTTATG 59.530 40.000 0.00 0.00 0.00 1.90
3580 6371 5.470098 GCAATGGTCTACGATGGATTTATGT 59.530 40.000 0.00 0.00 0.00 2.29
3581 6372 6.017109 GCAATGGTCTACGATGGATTTATGTT 60.017 38.462 0.00 0.00 0.00 2.71
3582 6373 7.468631 GCAATGGTCTACGATGGATTTATGTTT 60.469 37.037 0.00 0.00 0.00 2.83
3583 6374 8.405531 CAATGGTCTACGATGGATTTATGTTTT 58.594 33.333 0.00 0.00 0.00 2.43
3584 6375 9.621629 AATGGTCTACGATGGATTTATGTTTTA 57.378 29.630 0.00 0.00 0.00 1.52
3585 6376 9.793259 ATGGTCTACGATGGATTTATGTTTTAT 57.207 29.630 0.00 0.00 0.00 1.40
3611 6402 8.702163 AACAAAACGTCTCATGAAAATTTTCT 57.298 26.923 26.73 12.98 38.02 2.52
3612 6403 9.796120 AACAAAACGTCTCATGAAAATTTTCTA 57.204 25.926 26.73 15.99 38.02 2.10
3613 6404 9.233232 ACAAAACGTCTCATGAAAATTTTCTAC 57.767 29.630 26.73 16.72 38.02 2.59
3614 6405 9.232082 CAAAACGTCTCATGAAAATTTTCTACA 57.768 29.630 26.73 11.89 38.02 2.74
3615 6406 9.796120 AAAACGTCTCATGAAAATTTTCTACAA 57.204 25.926 26.73 11.00 38.02 2.41
3616 6407 8.782533 AACGTCTCATGAAAATTTTCTACAAC 57.217 30.769 26.73 17.78 38.02 3.32
3617 6408 7.925993 ACGTCTCATGAAAATTTTCTACAACA 58.074 30.769 26.73 10.58 38.02 3.33
3618 6409 8.402472 ACGTCTCATGAAAATTTTCTACAACAA 58.598 29.630 26.73 9.37 38.02 2.83
3619 6410 8.895845 CGTCTCATGAAAATTTTCTACAACAAG 58.104 33.333 26.73 15.66 38.02 3.16
3620 6411 9.950680 GTCTCATGAAAATTTTCTACAACAAGA 57.049 29.630 26.73 17.17 38.02 3.02
3625 6416 9.831737 ATGAAAATTTTCTACAACAAGATCTCG 57.168 29.630 26.73 0.00 38.02 4.04
3626 6417 8.836413 TGAAAATTTTCTACAACAAGATCTCGT 58.164 29.630 26.73 0.00 38.02 4.18
3627 6418 9.665264 GAAAATTTTCTACAACAAGATCTCGTT 57.335 29.630 21.21 0.00 34.41 3.85
3629 6420 9.450807 AAATTTTCTACAACAAGATCTCGTTTG 57.549 29.630 0.00 3.13 0.00 2.93
3630 6421 7.780008 TTTTCTACAACAAGATCTCGTTTGA 57.220 32.000 14.63 4.44 0.00 2.69
3631 6422 7.780008 TTTCTACAACAAGATCTCGTTTGAA 57.220 32.000 14.63 9.06 0.00 2.69
3632 6423 7.780008 TTCTACAACAAGATCTCGTTTGAAA 57.220 32.000 14.63 6.21 0.00 2.69
3633 6424 7.780008 TCTACAACAAGATCTCGTTTGAAAA 57.220 32.000 14.63 3.30 0.00 2.29
3634 6425 8.203937 TCTACAACAAGATCTCGTTTGAAAAA 57.796 30.769 14.63 1.59 0.00 1.94
3659 6450 6.902224 AAATTACAACAAAACCTCAGTTGC 57.098 33.333 0.00 0.00 44.77 4.17
3660 6451 5.590530 ATTACAACAAAACCTCAGTTGCA 57.409 34.783 0.00 0.00 44.77 4.08
3661 6452 3.951775 ACAACAAAACCTCAGTTGCAA 57.048 38.095 0.00 0.00 44.77 4.08
3662 6453 4.264460 ACAACAAAACCTCAGTTGCAAA 57.736 36.364 0.00 0.00 44.77 3.68
3663 6454 4.636249 ACAACAAAACCTCAGTTGCAAAA 58.364 34.783 0.00 0.00 44.77 2.44
3664 6455 5.059833 ACAACAAAACCTCAGTTGCAAAAA 58.940 33.333 0.00 0.00 44.77 1.94
3665 6456 5.704978 ACAACAAAACCTCAGTTGCAAAAAT 59.295 32.000 0.00 0.00 44.77 1.82
3666 6457 5.799681 ACAAAACCTCAGTTGCAAAAATG 57.200 34.783 0.00 0.43 35.97 2.32
3667 6458 5.244755 ACAAAACCTCAGTTGCAAAAATGT 58.755 33.333 0.00 0.00 35.97 2.71
3668 6459 5.704978 ACAAAACCTCAGTTGCAAAAATGTT 59.295 32.000 0.00 0.00 35.97 2.71
3669 6460 6.206438 ACAAAACCTCAGTTGCAAAAATGTTT 59.794 30.769 0.00 5.20 35.97 2.83
3670 6461 6.816134 AAACCTCAGTTGCAAAAATGTTTT 57.184 29.167 0.00 0.00 35.97 2.43
3671 6462 6.816134 AACCTCAGTTGCAAAAATGTTTTT 57.184 29.167 0.00 0.00 36.45 1.94
3672 6463 7.083230 AAACCTCAGTTGCAAAAATGTTTTTG 58.917 30.769 20.87 20.87 45.65 2.44
3696 6487 5.757850 AACAAAACAGTTGTTGCCAAAAA 57.242 30.435 3.76 0.00 40.70 1.94
3715 6506 3.369546 AAAAATCTGCAACAAGACCCG 57.630 42.857 0.00 0.00 0.00 5.28
3716 6507 1.981256 AAATCTGCAACAAGACCCGT 58.019 45.000 0.00 0.00 0.00 5.28
3717 6508 2.851263 AATCTGCAACAAGACCCGTA 57.149 45.000 0.00 0.00 0.00 4.02
3718 6509 3.350219 AATCTGCAACAAGACCCGTAT 57.650 42.857 0.00 0.00 0.00 3.06
3719 6510 2.851263 TCTGCAACAAGACCCGTATT 57.149 45.000 0.00 0.00 0.00 1.89
3720 6511 2.422597 TCTGCAACAAGACCCGTATTG 58.577 47.619 0.80 0.80 37.75 1.90
3721 6512 0.878416 TGCAACAAGACCCGTATTGC 59.122 50.000 2.22 0.00 44.66 3.56
3722 6513 0.878416 GCAACAAGACCCGTATTGCA 59.122 50.000 2.22 0.00 44.01 4.08
3723 6514 1.268352 GCAACAAGACCCGTATTGCAA 59.732 47.619 0.00 0.00 44.01 4.08
3724 6515 2.094752 GCAACAAGACCCGTATTGCAAT 60.095 45.455 17.56 17.56 44.01 3.56
3725 6516 3.500982 CAACAAGACCCGTATTGCAATG 58.499 45.455 22.27 7.55 35.37 2.82
3726 6517 2.091541 ACAAGACCCGTATTGCAATGG 58.908 47.619 22.27 16.48 35.37 3.16
3727 6518 2.091541 CAAGACCCGTATTGCAATGGT 58.908 47.619 22.27 19.58 0.00 3.55
3728 6519 1.750193 AGACCCGTATTGCAATGGTG 58.250 50.000 21.15 11.37 0.00 4.17
3729 6520 1.280710 AGACCCGTATTGCAATGGTGA 59.719 47.619 21.15 0.13 0.00 4.02
3730 6521 2.088423 GACCCGTATTGCAATGGTGAA 58.912 47.619 21.15 0.00 0.00 3.18
3731 6522 2.091541 ACCCGTATTGCAATGGTGAAG 58.908 47.619 22.27 8.11 0.00 3.02
3732 6523 2.290641 ACCCGTATTGCAATGGTGAAGA 60.291 45.455 22.27 0.00 0.00 2.87
3733 6524 2.097466 CCCGTATTGCAATGGTGAAGAC 59.903 50.000 22.27 9.02 0.00 3.01
3734 6525 2.223021 CCGTATTGCAATGGTGAAGACG 60.223 50.000 22.27 19.50 33.36 4.18
3735 6526 2.415168 CGTATTGCAATGGTGAAGACGT 59.585 45.455 22.27 0.00 31.19 4.34
3736 6527 2.995466 ATTGCAATGGTGAAGACGTG 57.005 45.000 12.09 0.00 0.00 4.49
3737 6528 0.310543 TTGCAATGGTGAAGACGTGC 59.689 50.000 0.00 0.00 0.00 5.34
3738 6529 0.534877 TGCAATGGTGAAGACGTGCT 60.535 50.000 0.00 0.00 0.00 4.40
3739 6530 0.166814 GCAATGGTGAAGACGTGCTC 59.833 55.000 0.00 0.00 0.00 4.26
3740 6531 0.439985 CAATGGTGAAGACGTGCTCG 59.560 55.000 6.63 6.63 43.34 5.03
3741 6532 0.670546 AATGGTGAAGACGTGCTCGG 60.671 55.000 13.32 0.00 41.85 4.63
3742 6533 3.112709 GGTGAAGACGTGCTCGGC 61.113 66.667 13.32 9.89 46.75 5.54
3759 6550 4.592192 CCGGTCGATGCGGCAGAT 62.592 66.667 9.25 0.00 30.88 2.90
3760 6551 3.032609 CGGTCGATGCGGCAGATC 61.033 66.667 9.25 0.63 30.88 2.75
3761 6552 2.106938 GGTCGATGCGGCAGATCA 59.893 61.111 9.25 0.00 30.88 2.92
3762 6553 2.240500 GGTCGATGCGGCAGATCAC 61.241 63.158 9.25 2.30 30.88 3.06
3763 6554 2.106938 TCGATGCGGCAGATCACC 59.893 61.111 9.25 0.00 0.00 4.02
3764 6555 2.969238 CGATGCGGCAGATCACCC 60.969 66.667 9.25 0.00 0.00 4.61
3765 6556 2.969238 GATGCGGCAGATCACCCG 60.969 66.667 16.89 16.89 46.94 5.28
3766 6557 4.552365 ATGCGGCAGATCACCCGG 62.552 66.667 20.92 0.00 44.49 5.73
3770 6561 4.241555 GGCAGATCACCCGGCGAT 62.242 66.667 9.30 0.00 0.00 4.58
3771 6562 2.969238 GCAGATCACCCGGCGATG 60.969 66.667 9.30 6.63 0.00 3.84
3772 6563 2.969238 CAGATCACCCGGCGATGC 60.969 66.667 9.30 0.00 0.00 3.91
3773 6564 4.592192 AGATCACCCGGCGATGCG 62.592 66.667 9.30 0.00 0.00 4.73
3774 6565 4.891727 GATCACCCGGCGATGCGT 62.892 66.667 9.30 0.00 0.00 5.24
3775 6566 3.493830 GATCACCCGGCGATGCGTA 62.494 63.158 9.30 0.00 0.00 4.42
3776 6567 3.499929 ATCACCCGGCGATGCGTAG 62.500 63.158 9.30 0.00 0.00 3.51
3789 6580 2.186903 CGTAGCACGCCCCTTCAT 59.813 61.111 0.00 0.00 33.65 2.57
3790 6581 1.883084 CGTAGCACGCCCCTTCATC 60.883 63.158 0.00 0.00 33.65 2.92
3827 6618 1.066002 CTCCCACGCCATAAAATGCAG 59.934 52.381 0.00 0.00 0.00 4.41
3837 6628 5.450412 CGCCATAAAATGCAGAAACCACTAT 60.450 40.000 0.00 0.00 0.00 2.12
3841 6632 7.201812 CCATAAAATGCAGAAACCACTATAGCA 60.202 37.037 0.00 0.00 34.78 3.49
3842 6633 5.824904 AAATGCAGAAACCACTATAGCAG 57.175 39.130 0.00 0.00 33.69 4.24
3843 6634 3.981071 TGCAGAAACCACTATAGCAGT 57.019 42.857 0.00 0.00 38.32 4.40
3844 6635 5.614324 ATGCAGAAACCACTATAGCAGTA 57.386 39.130 0.00 0.00 34.98 2.74
3845 6636 5.614324 TGCAGAAACCACTATAGCAGTAT 57.386 39.130 0.00 0.00 34.98 2.12
3846 6637 6.724893 TGCAGAAACCACTATAGCAGTATA 57.275 37.500 0.00 0.00 34.98 1.47
3847 6638 6.749139 TGCAGAAACCACTATAGCAGTATAG 58.251 40.000 0.00 0.00 42.79 1.31
3848 6639 5.635700 GCAGAAACCACTATAGCAGTATAGC 59.364 44.000 0.00 0.00 41.38 2.97
3850 6641 7.087639 CAGAAACCACTATAGCAGTATAGCTC 58.912 42.308 0.00 0.00 45.26 4.09
3851 6642 5.986501 AACCACTATAGCAGTATAGCTCC 57.013 43.478 0.00 0.00 45.26 4.70
3852 6643 4.999310 ACCACTATAGCAGTATAGCTCCA 58.001 43.478 0.00 0.00 45.26 3.86
3853 6644 5.584913 ACCACTATAGCAGTATAGCTCCAT 58.415 41.667 0.00 0.00 45.26 3.41
3854 6645 5.420421 ACCACTATAGCAGTATAGCTCCATG 59.580 44.000 0.00 0.00 45.26 3.66
3855 6646 5.654209 CCACTATAGCAGTATAGCTCCATGA 59.346 44.000 0.00 0.00 45.26 3.07
3856 6647 6.323482 CCACTATAGCAGTATAGCTCCATGAT 59.677 42.308 0.00 0.00 45.26 2.45
3857 6648 7.424803 CACTATAGCAGTATAGCTCCATGATC 58.575 42.308 0.00 0.00 45.26 2.92
3858 6649 7.067981 CACTATAGCAGTATAGCTCCATGATCA 59.932 40.741 0.00 0.00 45.26 2.92
3859 6650 4.533919 AGCAGTATAGCTCCATGATCAC 57.466 45.455 0.00 0.00 42.18 3.06
3860 6651 3.899980 AGCAGTATAGCTCCATGATCACA 59.100 43.478 0.00 0.00 42.18 3.58
3861 6652 4.346127 AGCAGTATAGCTCCATGATCACAA 59.654 41.667 0.00 0.00 42.18 3.33
3862 6653 4.689812 GCAGTATAGCTCCATGATCACAAG 59.310 45.833 0.00 0.00 0.00 3.16
3863 6654 4.689812 CAGTATAGCTCCATGATCACAAGC 59.310 45.833 14.80 14.80 0.00 4.01
3864 6655 4.592351 AGTATAGCTCCATGATCACAAGCT 59.408 41.667 23.84 23.84 44.92 3.74
3865 6656 2.328819 AGCTCCATGATCACAAGCTC 57.671 50.000 18.01 0.00 38.96 4.09
3866 6657 1.134159 AGCTCCATGATCACAAGCTCC 60.134 52.381 18.01 0.00 38.96 4.70
3867 6658 1.407851 GCTCCATGATCACAAGCTCCA 60.408 52.381 15.17 0.00 0.00 3.86
3868 6659 2.562635 CTCCATGATCACAAGCTCCAG 58.437 52.381 0.00 0.00 0.00 3.86
3869 6660 1.911357 TCCATGATCACAAGCTCCAGT 59.089 47.619 0.00 0.00 0.00 4.00
3870 6661 2.093288 TCCATGATCACAAGCTCCAGTC 60.093 50.000 0.00 0.00 0.00 3.51
3871 6662 2.286872 CATGATCACAAGCTCCAGTCC 58.713 52.381 0.00 0.00 0.00 3.85
3872 6663 1.649321 TGATCACAAGCTCCAGTCCT 58.351 50.000 0.00 0.00 0.00 3.85
3873 6664 1.980765 TGATCACAAGCTCCAGTCCTT 59.019 47.619 0.00 0.00 0.00 3.36
3874 6665 2.373169 TGATCACAAGCTCCAGTCCTTT 59.627 45.455 0.00 0.00 0.00 3.11
3875 6666 3.181440 TGATCACAAGCTCCAGTCCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
3876 6667 3.297134 TCACAAGCTCCAGTCCTTTTT 57.703 42.857 0.00 0.00 0.00 1.94
3961 6752 9.847224 AAATTACAATATCGTTCATAGGTTCCT 57.153 29.630 0.00 0.00 0.00 3.36
3962 6753 9.490379 AATTACAATATCGTTCATAGGTTCCTC 57.510 33.333 0.00 0.00 0.00 3.71
3963 6754 6.479972 ACAATATCGTTCATAGGTTCCTCA 57.520 37.500 0.00 0.00 0.00 3.86
3964 6755 6.884832 ACAATATCGTTCATAGGTTCCTCAA 58.115 36.000 0.00 0.00 0.00 3.02
3965 6756 7.335627 ACAATATCGTTCATAGGTTCCTCAAA 58.664 34.615 0.00 0.00 0.00 2.69
3966 6757 7.280205 ACAATATCGTTCATAGGTTCCTCAAAC 59.720 37.037 0.00 0.00 37.12 2.93
3976 6767 3.942130 GTTCCTCAAACCAATCCCTTG 57.058 47.619 0.00 0.00 31.20 3.61
3977 6768 3.230976 GTTCCTCAAACCAATCCCTTGT 58.769 45.455 0.00 0.00 31.20 3.16
3978 6769 3.154827 TCCTCAAACCAATCCCTTGTC 57.845 47.619 0.00 0.00 0.00 3.18
3979 6770 2.716424 TCCTCAAACCAATCCCTTGTCT 59.284 45.455 0.00 0.00 0.00 3.41
3980 6771 3.084786 CCTCAAACCAATCCCTTGTCTC 58.915 50.000 0.00 0.00 0.00 3.36
3981 6772 3.498481 CCTCAAACCAATCCCTTGTCTCA 60.498 47.826 0.00 0.00 0.00 3.27
3982 6773 3.754965 TCAAACCAATCCCTTGTCTCAG 58.245 45.455 0.00 0.00 0.00 3.35
3983 6774 3.394274 TCAAACCAATCCCTTGTCTCAGA 59.606 43.478 0.00 0.00 0.00 3.27
3984 6775 4.141274 TCAAACCAATCCCTTGTCTCAGAA 60.141 41.667 0.00 0.00 0.00 3.02
3985 6776 4.453480 AACCAATCCCTTGTCTCAGAAA 57.547 40.909 0.00 0.00 0.00 2.52
3986 6777 4.453480 ACCAATCCCTTGTCTCAGAAAA 57.547 40.909 0.00 0.00 0.00 2.29
3987 6778 5.003096 ACCAATCCCTTGTCTCAGAAAAT 57.997 39.130 0.00 0.00 0.00 1.82
3988 6779 5.397360 ACCAATCCCTTGTCTCAGAAAATT 58.603 37.500 0.00 0.00 0.00 1.82
3989 6780 5.840693 ACCAATCCCTTGTCTCAGAAAATTT 59.159 36.000 0.00 0.00 0.00 1.82
3990 6781 6.161381 CCAATCCCTTGTCTCAGAAAATTTG 58.839 40.000 0.00 0.00 0.00 2.32
3991 6782 6.015180 CCAATCCCTTGTCTCAGAAAATTTGA 60.015 38.462 0.00 0.00 0.00 2.69
3992 6783 6.581171 ATCCCTTGTCTCAGAAAATTTGAC 57.419 37.500 0.00 0.00 0.00 3.18
3993 6784 5.694995 TCCCTTGTCTCAGAAAATTTGACT 58.305 37.500 7.02 0.99 0.00 3.41
3994 6785 6.837312 TCCCTTGTCTCAGAAAATTTGACTA 58.163 36.000 7.02 0.29 0.00 2.59
3995 6786 6.710744 TCCCTTGTCTCAGAAAATTTGACTAC 59.289 38.462 7.02 0.88 0.00 2.73
3996 6787 6.712547 CCCTTGTCTCAGAAAATTTGACTACT 59.287 38.462 7.02 0.00 0.00 2.57
3997 6788 7.095017 CCCTTGTCTCAGAAAATTTGACTACTC 60.095 40.741 7.02 0.00 0.00 2.59
3998 6789 7.659390 CCTTGTCTCAGAAAATTTGACTACTCT 59.341 37.037 7.02 0.00 0.00 3.24
3999 6790 9.698309 CTTGTCTCAGAAAATTTGACTACTCTA 57.302 33.333 7.02 0.00 0.00 2.43
4000 6791 9.698309 TTGTCTCAGAAAATTTGACTACTCTAG 57.302 33.333 7.02 0.00 0.00 2.43
4001 6792 7.815068 TGTCTCAGAAAATTTGACTACTCTAGC 59.185 37.037 7.02 0.00 0.00 3.42
4002 6793 7.815068 GTCTCAGAAAATTTGACTACTCTAGCA 59.185 37.037 0.00 0.00 0.00 3.49
4003 6794 8.367911 TCTCAGAAAATTTGACTACTCTAGCAA 58.632 33.333 0.00 0.00 0.00 3.91
4004 6795 8.311650 TCAGAAAATTTGACTACTCTAGCAAC 57.688 34.615 0.00 0.00 0.00 4.17
4005 6796 8.150945 TCAGAAAATTTGACTACTCTAGCAACT 58.849 33.333 0.00 0.00 0.00 3.16
4006 6797 8.778358 CAGAAAATTTGACTACTCTAGCAACTT 58.222 33.333 0.00 0.00 0.00 2.66
4007 6798 8.994170 AGAAAATTTGACTACTCTAGCAACTTC 58.006 33.333 0.00 0.00 0.00 3.01
4008 6799 8.677148 AAAATTTGACTACTCTAGCAACTTCA 57.323 30.769 0.00 0.00 0.00 3.02
4009 6800 8.854614 AAATTTGACTACTCTAGCAACTTCAT 57.145 30.769 0.00 0.00 0.00 2.57
4010 6801 9.944376 AAATTTGACTACTCTAGCAACTTCATA 57.056 29.630 0.00 0.00 0.00 2.15
4011 6802 9.944376 AATTTGACTACTCTAGCAACTTCATAA 57.056 29.630 0.00 0.00 0.00 1.90
4012 6803 8.988064 TTTGACTACTCTAGCAACTTCATAAG 57.012 34.615 0.00 0.00 0.00 1.73
4013 6804 6.565234 TGACTACTCTAGCAACTTCATAAGC 58.435 40.000 0.00 0.00 0.00 3.09
4014 6805 6.378564 TGACTACTCTAGCAACTTCATAAGCT 59.621 38.462 0.00 0.00 40.92 3.74
4015 6806 7.556635 TGACTACTCTAGCAACTTCATAAGCTA 59.443 37.037 0.00 0.00 38.47 3.32
4016 6807 7.708998 ACTACTCTAGCAACTTCATAAGCTAC 58.291 38.462 0.00 0.00 38.47 3.58
4017 6808 6.783708 ACTCTAGCAACTTCATAAGCTACT 57.216 37.500 0.00 0.00 38.47 2.57
4018 6809 7.176589 ACTCTAGCAACTTCATAAGCTACTT 57.823 36.000 0.00 0.00 38.47 2.24
4019 6810 7.616313 ACTCTAGCAACTTCATAAGCTACTTT 58.384 34.615 0.00 0.00 38.47 2.66
4020 6811 8.750298 ACTCTAGCAACTTCATAAGCTACTTTA 58.250 33.333 0.00 0.00 38.47 1.85
4021 6812 9.757227 CTCTAGCAACTTCATAAGCTACTTTAT 57.243 33.333 0.00 0.00 38.47 1.40
4025 6816 7.970614 AGCAACTTCATAAGCTACTTTATTTGC 59.029 33.333 9.31 9.31 35.39 3.68
4026 6817 7.220875 GCAACTTCATAAGCTACTTTATTTGCC 59.779 37.037 7.02 0.00 32.31 4.52
4027 6818 8.462016 CAACTTCATAAGCTACTTTATTTGCCT 58.538 33.333 0.00 0.00 0.00 4.75
4028 6819 8.581253 ACTTCATAAGCTACTTTATTTGCCTT 57.419 30.769 0.00 0.00 0.00 4.35
4029 6820 9.025041 ACTTCATAAGCTACTTTATTTGCCTTT 57.975 29.630 0.00 0.00 0.00 3.11
4030 6821 9.860898 CTTCATAAGCTACTTTATTTGCCTTTT 57.139 29.630 0.00 0.00 0.00 2.27
4070 6861 8.950403 AATCTAACTAACGAAAAATCACAAGC 57.050 30.769 0.00 0.00 0.00 4.01
4071 6862 6.894828 TCTAACTAACGAAAAATCACAAGCC 58.105 36.000 0.00 0.00 0.00 4.35
4072 6863 5.508200 AACTAACGAAAAATCACAAGCCA 57.492 34.783 0.00 0.00 0.00 4.75
4073 6864 5.508200 ACTAACGAAAAATCACAAGCCAA 57.492 34.783 0.00 0.00 0.00 4.52
4074 6865 5.897050 ACTAACGAAAAATCACAAGCCAAA 58.103 33.333 0.00 0.00 0.00 3.28
4075 6866 6.334202 ACTAACGAAAAATCACAAGCCAAAA 58.666 32.000 0.00 0.00 0.00 2.44
4076 6867 6.814146 ACTAACGAAAAATCACAAGCCAAAAA 59.186 30.769 0.00 0.00 0.00 1.94
4097 6888 6.843069 AAAATAACAACCATCAAACACAGC 57.157 33.333 0.00 0.00 0.00 4.40
4098 6889 5.789643 AATAACAACCATCAAACACAGCT 57.210 34.783 0.00 0.00 0.00 4.24
4099 6890 3.441496 AACAACCATCAAACACAGCTG 57.559 42.857 13.48 13.48 0.00 4.24
4100 6891 1.067516 ACAACCATCAAACACAGCTGC 59.932 47.619 15.27 0.00 0.00 5.25
4101 6892 0.675633 AACCATCAAACACAGCTGCC 59.324 50.000 15.27 0.00 0.00 4.85
4102 6893 1.210931 CCATCAAACACAGCTGCCG 59.789 57.895 15.27 8.03 0.00 5.69
4103 6894 1.443194 CATCAAACACAGCTGCCGC 60.443 57.895 15.27 0.00 0.00 6.53
4104 6895 2.629656 ATCAAACACAGCTGCCGCC 61.630 57.895 15.27 0.00 36.60 6.13
4105 6896 4.688419 CAAACACAGCTGCCGCCG 62.688 66.667 15.27 0.00 36.60 6.46
4119 6910 4.530857 GCCGCTCCCGCTGTATGT 62.531 66.667 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.844790 TCTCAACATGATCAATAAAATCAACAC 57.155 29.630 0.00 0.00 36.75 3.32
214 215 1.436600 ATGCTTCAGTGCTTCACTCG 58.563 50.000 0.00 0.00 43.43 4.18
227 228 8.429008 GTCTCCTTAGAATCAGCCTTATGCTTC 61.429 44.444 0.00 0.00 40.41 3.86
228 229 6.687647 GTCTCCTTAGAATCAGCCTTATGCTT 60.688 42.308 0.00 0.00 40.41 3.91
229 230 5.221621 GTCTCCTTAGAATCAGCCTTATGCT 60.222 44.000 0.00 0.00 42.23 3.79
230 231 4.994217 GTCTCCTTAGAATCAGCCTTATGC 59.006 45.833 0.00 0.00 34.84 3.14
231 232 6.166984 TGTCTCCTTAGAATCAGCCTTATG 57.833 41.667 0.00 0.00 32.16 1.90
232 233 6.408662 GGTTGTCTCCTTAGAATCAGCCTTAT 60.409 42.308 0.00 0.00 32.16 1.73
353 2919 2.653726 TGTTCCATGTGTGCTTGTTCT 58.346 42.857 0.00 0.00 0.00 3.01
531 3097 5.049818 GTGTTCTGCATCTGCCTATCATTAC 60.050 44.000 0.00 0.00 41.18 1.89
854 3421 3.341823 ACTGGTCATGATTCTTGTGCTC 58.658 45.455 0.00 0.00 0.00 4.26
1149 3716 2.839486 ATCGAGCAAAGTCCTTGTGA 57.161 45.000 0.00 0.00 37.36 3.58
1687 4254 4.356405 TCTCGCAACCATATGGATCAAT 57.644 40.909 28.77 1.90 38.94 2.57
1701 4268 3.130164 CCTCTCTCATCTTCTTCTCGCAA 59.870 47.826 0.00 0.00 0.00 4.85
1787 4354 1.028868 GGATGCACCACTCTTCCTGC 61.029 60.000 0.00 0.00 38.79 4.85
2027 4597 8.246180 ACAACTATGAAGCGAAATCAATTTCAT 58.754 29.630 14.11 3.84 44.83 2.57
2040 4610 2.967459 TGCACAACAACTATGAAGCG 57.033 45.000 0.00 0.00 0.00 4.68
2085 4655 6.797454 AGTGTCGCAAAATAACTTTTTGGTA 58.203 32.000 11.50 0.00 39.19 3.25
2104 4674 3.990959 ATTCTCAAAGGGAGGAGTGTC 57.009 47.619 0.00 0.00 44.19 3.67
2138 4708 9.589461 CCCTACTCTCTTTTTACCATCTATCTA 57.411 37.037 0.00 0.00 0.00 1.98
2139 4709 8.290277 TCCCTACTCTCTTTTTACCATCTATCT 58.710 37.037 0.00 0.00 0.00 1.98
2140 4710 8.480133 TCCCTACTCTCTTTTTACCATCTATC 57.520 38.462 0.00 0.00 0.00 2.08
2141 4711 8.068733 ACTCCCTACTCTCTTTTTACCATCTAT 58.931 37.037 0.00 0.00 0.00 1.98
2234 4804 6.807230 AGCAAGAACAACTACTCGTACTTATG 59.193 38.462 0.00 0.00 0.00 1.90
2256 4829 5.474578 TGGTGGTTTATTTAATGCAAGCA 57.525 34.783 0.00 0.00 0.00 3.91
2435 5019 3.865745 CGTTGGTCACTGATGAAGTATCC 59.134 47.826 0.00 0.00 36.83 2.59
2499 5083 0.619832 AGCTCCTCCTGGATCTTGCA 60.620 55.000 0.00 0.00 42.29 4.08
2534 5118 4.329545 ACCACCATGCGGCTTCGT 62.330 61.111 0.00 0.00 34.57 3.85
2535 5119 3.803082 CACCACCATGCGGCTTCG 61.803 66.667 0.00 0.00 34.57 3.79
2536 5120 3.443045 CCACCACCATGCGGCTTC 61.443 66.667 0.00 0.00 34.57 3.86
2537 5121 3.925630 CTCCACCACCATGCGGCTT 62.926 63.158 0.00 0.00 34.57 4.35
2648 5232 1.586564 GATCGTCGTCGCCTTGAGG 60.587 63.158 0.00 0.00 36.96 3.86
2816 5400 0.539051 AGGGCAGGATCTTGAAGTCG 59.461 55.000 9.36 0.00 0.00 4.18
2951 5535 4.736739 TCGGTGTCGATGTCCTCT 57.263 55.556 0.00 0.00 40.88 3.69
3154 5762 9.827411 CTGCATTGAAATATCTCAGATTACATG 57.173 33.333 0.00 0.00 0.00 3.21
3171 5779 7.319142 TCGATTCATATTGTTCTGCATTGAA 57.681 32.000 0.00 0.00 0.00 2.69
3176 5784 6.923928 TGATTCGATTCATATTGTTCTGCA 57.076 33.333 5.92 0.00 0.00 4.41
3185 5793 9.682465 ATGATCTGGAAATGATTCGATTCATAT 57.318 29.630 19.98 10.71 35.29 1.78
3186 5794 9.511272 AATGATCTGGAAATGATTCGATTCATA 57.489 29.630 19.98 6.88 35.29 2.15
3193 5801 6.037940 ACAGTGAATGATCTGGAAATGATTCG 59.962 38.462 0.00 0.00 33.51 3.34
3223 5831 4.141846 ACATATGAACGCAAGATCCAGAGT 60.142 41.667 10.38 0.00 38.54 3.24
3257 5868 3.329743 GGTCATGCATGAACAAGATCG 57.670 47.619 34.56 3.44 43.87 3.69
3276 5887 8.511321 CATCTACTACAAAGCTACTATCTCTGG 58.489 40.741 0.00 0.00 0.00 3.86
3303 5914 7.225341 TCAGTGCATTAGTAAGATAAGTGCATG 59.775 37.037 9.21 8.78 42.23 4.06
3320 5931 1.547372 GCCTCAATGGTTCAGTGCATT 59.453 47.619 0.00 0.00 38.35 3.56
3327 5938 0.250684 TTGCTCGCCTCAATGGTTCA 60.251 50.000 0.00 0.00 38.35 3.18
3337 5948 0.537143 TTTGTCATGGTTGCTCGCCT 60.537 50.000 0.00 0.00 0.00 5.52
3342 6133 1.002315 GCCCATTTTGTCATGGTTGCT 59.998 47.619 0.00 0.00 42.20 3.91
3392 6183 1.237285 GCCCACGACAACTTCTGCAT 61.237 55.000 0.00 0.00 0.00 3.96
3401 6192 0.327924 ATGGATGAAGCCCACGACAA 59.672 50.000 0.00 0.00 36.36 3.18
3405 6196 1.825191 CCCATGGATGAAGCCCACG 60.825 63.158 15.22 0.00 36.36 4.94
3409 6200 0.740737 CGTTTCCCATGGATGAAGCC 59.259 55.000 15.22 3.26 0.00 4.35
3423 6214 1.664151 CCGGTTGATAGGAAGCGTTTC 59.336 52.381 3.02 3.02 43.57 2.78
3425 6216 0.743345 GCCGGTTGATAGGAAGCGTT 60.743 55.000 1.90 0.00 43.57 4.84
3426 6217 1.153429 GCCGGTTGATAGGAAGCGT 60.153 57.895 1.90 0.00 43.57 5.07
3427 6218 2.237751 CGCCGGTTGATAGGAAGCG 61.238 63.158 1.90 0.00 44.44 4.68
3428 6219 1.887707 CCGCCGGTTGATAGGAAGC 60.888 63.158 1.90 0.00 0.00 3.86
3431 6222 1.802337 CGATCCGCCGGTTGATAGGA 61.802 60.000 1.63 3.32 35.24 2.94
3433 6224 4.245054 CGATCCGCCGGTTGATAG 57.755 61.111 1.63 2.11 0.00 2.08
3463 6254 3.411517 ATCCAGGGAAGGTGGCGG 61.412 66.667 0.00 0.00 34.77 6.13
3464 6255 2.124570 CATCCAGGGAAGGTGGCG 60.125 66.667 0.00 0.00 34.77 5.69
3467 6258 2.020694 GCATGTCATCCAGGGAAGGTG 61.021 57.143 0.00 0.00 0.00 4.00
3468 6259 0.257039 GCATGTCATCCAGGGAAGGT 59.743 55.000 0.00 0.00 0.00 3.50
3471 6262 2.353357 GATGCATGTCATCCAGGGAA 57.647 50.000 2.46 0.00 44.54 3.97
3479 6270 1.306148 CCTCGCTTGATGCATGTCAT 58.694 50.000 2.46 2.78 43.06 3.06
3481 6272 0.745845 ACCCTCGCTTGATGCATGTC 60.746 55.000 2.46 0.00 43.06 3.06
3484 6275 0.035152 TTGACCCTCGCTTGATGCAT 60.035 50.000 0.00 0.00 43.06 3.96
3485 6276 0.955428 GTTGACCCTCGCTTGATGCA 60.955 55.000 0.00 0.00 43.06 3.96
3486 6277 1.796796 GTTGACCCTCGCTTGATGC 59.203 57.895 0.00 0.00 38.57 3.91
3488 6279 0.892755 TACGTTGACCCTCGCTTGAT 59.107 50.000 0.00 0.00 0.00 2.57
3489 6280 0.038892 GTACGTTGACCCTCGCTTGA 60.039 55.000 0.00 0.00 0.00 3.02
3490 6281 1.012486 GGTACGTTGACCCTCGCTTG 61.012 60.000 0.00 0.00 32.88 4.01
3491 6282 1.291272 GGTACGTTGACCCTCGCTT 59.709 57.895 0.00 0.00 32.88 4.68
3492 6283 1.255667 ATGGTACGTTGACCCTCGCT 61.256 55.000 5.06 0.00 38.89 4.93
3493 6284 0.804933 GATGGTACGTTGACCCTCGC 60.805 60.000 5.06 0.00 38.89 5.03
3494 6285 0.179119 GGATGGTACGTTGACCCTCG 60.179 60.000 5.06 0.00 38.89 4.63
3495 6286 1.192428 AGGATGGTACGTTGACCCTC 58.808 55.000 5.06 4.84 38.89 4.30
3496 6287 1.553704 GAAGGATGGTACGTTGACCCT 59.446 52.381 5.06 0.00 38.89 4.34
3497 6288 1.276989 TGAAGGATGGTACGTTGACCC 59.723 52.381 5.06 0.00 38.89 4.46
3498 6289 2.754946 TGAAGGATGGTACGTTGACC 57.245 50.000 0.00 0.00 40.21 4.02
3499 6290 2.351726 GCATGAAGGATGGTACGTTGAC 59.648 50.000 0.00 0.00 31.99 3.18
3500 6291 2.027653 TGCATGAAGGATGGTACGTTGA 60.028 45.455 0.00 0.00 31.99 3.18
3501 6292 2.355197 TGCATGAAGGATGGTACGTTG 58.645 47.619 0.00 0.00 31.99 4.10
3502 6293 2.779755 TGCATGAAGGATGGTACGTT 57.220 45.000 0.00 0.00 31.99 3.99
3503 6294 2.779755 TTGCATGAAGGATGGTACGT 57.220 45.000 0.00 0.00 31.99 3.57
3504 6295 3.748048 CCTATTGCATGAAGGATGGTACG 59.252 47.826 0.00 0.00 31.64 3.67
3505 6296 4.973168 TCCTATTGCATGAAGGATGGTAC 58.027 43.478 7.85 0.00 34.46 3.34
3506 6297 4.505566 GCTCCTATTGCATGAAGGATGGTA 60.506 45.833 11.41 0.00 38.70 3.25
3507 6298 3.749954 GCTCCTATTGCATGAAGGATGGT 60.750 47.826 11.41 0.00 38.70 3.55
3508 6299 2.818432 GCTCCTATTGCATGAAGGATGG 59.182 50.000 11.41 4.30 38.70 3.51
3509 6300 3.752665 AGCTCCTATTGCATGAAGGATG 58.247 45.455 11.41 7.98 38.70 3.51
3510 6301 5.498393 CATAGCTCCTATTGCATGAAGGAT 58.502 41.667 11.41 2.88 38.70 3.24
3511 6302 4.805272 GCATAGCTCCTATTGCATGAAGGA 60.805 45.833 10.73 10.73 37.07 3.36
3512 6303 3.439476 GCATAGCTCCTATTGCATGAAGG 59.561 47.826 0.00 3.65 0.00 3.46
3513 6304 4.325119 AGCATAGCTCCTATTGCATGAAG 58.675 43.478 0.00 0.00 30.62 3.02
3514 6305 4.362470 AGCATAGCTCCTATTGCATGAA 57.638 40.909 0.00 0.00 30.62 2.57
3515 6306 4.041321 AGAAGCATAGCTCCTATTGCATGA 59.959 41.667 0.00 0.00 38.25 3.07
3516 6307 4.154375 CAGAAGCATAGCTCCTATTGCATG 59.846 45.833 0.00 0.00 38.25 4.06
3517 6308 4.041321 TCAGAAGCATAGCTCCTATTGCAT 59.959 41.667 0.00 0.00 38.25 3.96
3518 6309 3.389002 TCAGAAGCATAGCTCCTATTGCA 59.611 43.478 0.00 0.00 38.25 4.08
3519 6310 4.000331 TCAGAAGCATAGCTCCTATTGC 58.000 45.455 0.00 0.00 38.25 3.56
3520 6311 5.819379 TGTTTCAGAAGCATAGCTCCTATTG 59.181 40.000 0.00 0.00 38.25 1.90
3521 6312 5.994250 TGTTTCAGAAGCATAGCTCCTATT 58.006 37.500 0.00 0.00 38.25 1.73
3522 6313 5.620738 TGTTTCAGAAGCATAGCTCCTAT 57.379 39.130 0.00 0.00 38.25 2.57
3523 6314 5.620738 ATGTTTCAGAAGCATAGCTCCTA 57.379 39.130 10.59 0.00 38.25 2.94
3524 6315 3.988976 TGTTTCAGAAGCATAGCTCCT 57.011 42.857 0.00 0.00 38.25 3.69
3525 6316 5.819901 ACTTATGTTTCAGAAGCATAGCTCC 59.180 40.000 16.57 0.00 38.25 4.70
3526 6317 6.238320 CCACTTATGTTTCAGAAGCATAGCTC 60.238 42.308 16.57 0.00 38.25 4.09
3527 6318 5.587844 CCACTTATGTTTCAGAAGCATAGCT 59.412 40.000 16.57 6.34 42.56 3.32
3528 6319 5.355350 ACCACTTATGTTTCAGAAGCATAGC 59.645 40.000 16.57 0.00 36.31 2.97
3529 6320 6.372659 ACACCACTTATGTTTCAGAAGCATAG 59.627 38.462 16.57 13.71 36.31 2.23
3530 6321 6.237901 ACACCACTTATGTTTCAGAAGCATA 58.762 36.000 14.05 14.05 36.31 3.14
3531 6322 5.072741 ACACCACTTATGTTTCAGAAGCAT 58.927 37.500 15.93 15.93 36.31 3.79
3532 6323 4.460263 ACACCACTTATGTTTCAGAAGCA 58.540 39.130 1.71 1.71 36.31 3.91
3533 6324 5.215160 CAACACCACTTATGTTTCAGAAGC 58.785 41.667 4.39 0.00 38.22 3.86
3534 6325 5.215160 GCAACACCACTTATGTTTCAGAAG 58.785 41.667 3.13 3.13 38.22 2.85
3535 6326 4.642437 TGCAACACCACTTATGTTTCAGAA 59.358 37.500 0.00 0.00 38.22 3.02
3536 6327 4.203226 TGCAACACCACTTATGTTTCAGA 58.797 39.130 0.00 0.00 38.22 3.27
3537 6328 4.566545 TGCAACACCACTTATGTTTCAG 57.433 40.909 0.00 0.00 38.22 3.02
3538 6329 4.991153 TTGCAACACCACTTATGTTTCA 57.009 36.364 0.00 0.00 38.22 2.69
3539 6330 4.685628 CCATTGCAACACCACTTATGTTTC 59.314 41.667 0.00 0.00 38.22 2.78
3540 6331 4.100808 ACCATTGCAACACCACTTATGTTT 59.899 37.500 0.00 0.00 38.22 2.83
3541 6332 3.640967 ACCATTGCAACACCACTTATGTT 59.359 39.130 0.00 0.00 40.95 2.71
3542 6333 3.230134 ACCATTGCAACACCACTTATGT 58.770 40.909 0.00 0.00 0.00 2.29
3543 6334 3.507233 AGACCATTGCAACACCACTTATG 59.493 43.478 0.00 0.00 0.00 1.90
3544 6335 3.766545 AGACCATTGCAACACCACTTAT 58.233 40.909 0.00 0.00 0.00 1.73
3545 6336 3.222173 AGACCATTGCAACACCACTTA 57.778 42.857 0.00 0.00 0.00 2.24
3546 6337 2.071778 AGACCATTGCAACACCACTT 57.928 45.000 0.00 0.00 0.00 3.16
3547 6338 2.504367 GTAGACCATTGCAACACCACT 58.496 47.619 0.00 0.72 0.00 4.00
3548 6339 1.196808 CGTAGACCATTGCAACACCAC 59.803 52.381 0.00 0.00 0.00 4.16
3549 6340 1.070914 TCGTAGACCATTGCAACACCA 59.929 47.619 0.00 0.00 0.00 4.17
3550 6341 1.803334 TCGTAGACCATTGCAACACC 58.197 50.000 0.00 0.00 0.00 4.16
3551 6342 2.095853 CCATCGTAGACCATTGCAACAC 59.904 50.000 0.00 0.00 42.51 3.32
3552 6343 2.027653 TCCATCGTAGACCATTGCAACA 60.028 45.455 0.00 0.00 42.51 3.33
3553 6344 2.627945 TCCATCGTAGACCATTGCAAC 58.372 47.619 0.00 0.00 42.51 4.17
3554 6345 3.558931 ATCCATCGTAGACCATTGCAA 57.441 42.857 0.00 0.00 42.51 4.08
3555 6346 3.558931 AATCCATCGTAGACCATTGCA 57.441 42.857 0.00 0.00 42.51 4.08
3556 6347 5.470098 ACATAAATCCATCGTAGACCATTGC 59.530 40.000 0.00 0.00 42.51 3.56
3557 6348 7.496529 AACATAAATCCATCGTAGACCATTG 57.503 36.000 0.00 0.00 42.51 2.82
3558 6349 8.519799 AAAACATAAATCCATCGTAGACCATT 57.480 30.769 0.00 0.00 42.51 3.16
3559 6350 9.793259 ATAAAACATAAATCCATCGTAGACCAT 57.207 29.630 0.00 0.00 42.51 3.55
3585 6376 9.796120 AGAAAATTTTCATGAGACGTTTTGTTA 57.204 25.926 28.00 0.00 39.61 2.41
3586 6377 8.702163 AGAAAATTTTCATGAGACGTTTTGTT 57.298 26.923 28.00 3.53 39.61 2.83
3587 6378 9.233232 GTAGAAAATTTTCATGAGACGTTTTGT 57.767 29.630 28.00 8.72 39.61 2.83
3588 6379 9.232082 TGTAGAAAATTTTCATGAGACGTTTTG 57.768 29.630 28.00 0.00 39.61 2.44
3589 6380 9.796120 TTGTAGAAAATTTTCATGAGACGTTTT 57.204 25.926 28.00 9.27 39.61 2.43
3590 6381 9.233232 GTTGTAGAAAATTTTCATGAGACGTTT 57.767 29.630 28.00 9.71 39.61 3.60
3591 6382 8.402472 TGTTGTAGAAAATTTTCATGAGACGTT 58.598 29.630 28.00 10.34 39.61 3.99
3592 6383 7.925993 TGTTGTAGAAAATTTTCATGAGACGT 58.074 30.769 28.00 10.96 39.61 4.34
3593 6384 8.781067 TTGTTGTAGAAAATTTTCATGAGACG 57.219 30.769 28.00 0.00 39.61 4.18
3594 6385 9.950680 TCTTGTTGTAGAAAATTTTCATGAGAC 57.049 29.630 28.00 19.53 39.61 3.36
3599 6390 9.831737 CGAGATCTTGTTGTAGAAAATTTTCAT 57.168 29.630 28.00 17.15 39.61 2.57
3600 6391 8.836413 ACGAGATCTTGTTGTAGAAAATTTTCA 58.164 29.630 28.00 14.21 39.61 2.69
3601 6392 9.665264 AACGAGATCTTGTTGTAGAAAATTTTC 57.335 29.630 24.74 21.00 35.94 2.29
3603 6394 9.450807 CAAACGAGATCTTGTTGTAGAAAATTT 57.549 29.630 25.78 6.35 37.27 1.82
3604 6395 8.836413 TCAAACGAGATCTTGTTGTAGAAAATT 58.164 29.630 25.78 7.02 37.27 1.82
3605 6396 8.378172 TCAAACGAGATCTTGTTGTAGAAAAT 57.622 30.769 25.78 7.69 37.27 1.82
3606 6397 7.780008 TCAAACGAGATCTTGTTGTAGAAAA 57.220 32.000 25.78 6.92 37.27 2.29
3607 6398 7.780008 TTCAAACGAGATCTTGTTGTAGAAA 57.220 32.000 25.78 14.02 37.27 2.52
3608 6399 7.780008 TTTCAAACGAGATCTTGTTGTAGAA 57.220 32.000 25.78 23.73 37.27 2.10
3609 6400 7.780008 TTTTCAAACGAGATCTTGTTGTAGA 57.220 32.000 25.78 20.31 37.27 2.59
3634 6425 7.389053 TGCAACTGAGGTTTTGTTGTAATTTTT 59.611 29.630 0.00 0.00 41.93 1.94
3635 6426 6.876257 TGCAACTGAGGTTTTGTTGTAATTTT 59.124 30.769 0.00 0.00 41.93 1.82
3636 6427 6.402222 TGCAACTGAGGTTTTGTTGTAATTT 58.598 32.000 0.00 0.00 41.93 1.82
3637 6428 5.971763 TGCAACTGAGGTTTTGTTGTAATT 58.028 33.333 0.00 0.00 41.93 1.40
3638 6429 5.590530 TGCAACTGAGGTTTTGTTGTAAT 57.409 34.783 0.00 0.00 41.93 1.89
3639 6430 5.392767 TTGCAACTGAGGTTTTGTTGTAA 57.607 34.783 0.00 0.00 41.40 2.41
3640 6431 5.392767 TTTGCAACTGAGGTTTTGTTGTA 57.607 34.783 0.00 0.00 41.93 2.41
3641 6432 3.951775 TTGCAACTGAGGTTTTGTTGT 57.048 38.095 0.00 0.00 41.93 3.32
3642 6433 5.604010 TTTTTGCAACTGAGGTTTTGTTG 57.396 34.783 0.00 0.00 42.55 3.33
3643 6434 5.704978 ACATTTTTGCAACTGAGGTTTTGTT 59.295 32.000 0.00 0.00 32.73 2.83
3644 6435 5.244755 ACATTTTTGCAACTGAGGTTTTGT 58.755 33.333 0.00 0.00 32.73 2.83
3645 6436 5.799681 ACATTTTTGCAACTGAGGTTTTG 57.200 34.783 0.00 0.00 32.73 2.44
3646 6437 6.816134 AAACATTTTTGCAACTGAGGTTTT 57.184 29.167 0.00 0.00 32.73 2.43
3647 6438 6.816134 AAAACATTTTTGCAACTGAGGTTT 57.184 29.167 0.00 5.78 32.73 3.27
3648 6439 6.610456 CAAAAACATTTTTGCAACTGAGGTT 58.390 32.000 14.93 0.00 46.94 3.50
3649 6440 6.180771 CAAAAACATTTTTGCAACTGAGGT 57.819 33.333 14.93 0.00 46.94 3.85
3695 6486 2.693074 ACGGGTCTTGTTGCAGATTTTT 59.307 40.909 0.00 0.00 0.00 1.94
3696 6487 2.306847 ACGGGTCTTGTTGCAGATTTT 58.693 42.857 0.00 0.00 0.00 1.82
3697 6488 1.981256 ACGGGTCTTGTTGCAGATTT 58.019 45.000 0.00 0.00 0.00 2.17
3698 6489 2.851263 TACGGGTCTTGTTGCAGATT 57.149 45.000 0.00 0.00 0.00 2.40
3699 6490 3.009723 CAATACGGGTCTTGTTGCAGAT 58.990 45.455 0.00 0.00 0.00 2.90
3700 6491 2.422597 CAATACGGGTCTTGTTGCAGA 58.577 47.619 0.00 0.00 0.00 4.26
3701 6492 1.135689 GCAATACGGGTCTTGTTGCAG 60.136 52.381 3.76 0.00 43.33 4.41
3702 6493 0.878416 GCAATACGGGTCTTGTTGCA 59.122 50.000 3.76 0.00 43.33 4.08
3703 6494 0.878416 TGCAATACGGGTCTTGTTGC 59.122 50.000 0.00 0.00 43.93 4.17
3704 6495 3.500982 CATTGCAATACGGGTCTTGTTG 58.499 45.455 12.53 0.00 0.00 3.33
3705 6496 2.491693 CCATTGCAATACGGGTCTTGTT 59.508 45.455 12.53 0.00 0.00 2.83
3706 6497 2.091541 CCATTGCAATACGGGTCTTGT 58.908 47.619 12.53 0.00 0.00 3.16
3707 6498 2.091541 ACCATTGCAATACGGGTCTTG 58.908 47.619 12.53 0.00 0.00 3.02
3708 6499 2.091541 CACCATTGCAATACGGGTCTT 58.908 47.619 12.53 0.00 0.00 3.01
3709 6500 1.280710 TCACCATTGCAATACGGGTCT 59.719 47.619 12.53 0.00 0.00 3.85
3710 6501 1.745232 TCACCATTGCAATACGGGTC 58.255 50.000 12.53 0.00 0.00 4.46
3711 6502 2.091541 CTTCACCATTGCAATACGGGT 58.908 47.619 12.53 12.73 0.00 5.28
3712 6503 2.097466 GTCTTCACCATTGCAATACGGG 59.903 50.000 12.53 12.04 0.00 5.28
3713 6504 2.223021 CGTCTTCACCATTGCAATACGG 60.223 50.000 12.53 12.80 0.00 4.02
3714 6505 2.415168 ACGTCTTCACCATTGCAATACG 59.585 45.455 21.04 21.04 0.00 3.06
3715 6506 3.747193 CACGTCTTCACCATTGCAATAC 58.253 45.455 12.53 3.88 0.00 1.89
3716 6507 2.161410 GCACGTCTTCACCATTGCAATA 59.839 45.455 12.53 0.00 0.00 1.90
3717 6508 1.068333 GCACGTCTTCACCATTGCAAT 60.068 47.619 5.99 5.99 0.00 3.56
3718 6509 0.310543 GCACGTCTTCACCATTGCAA 59.689 50.000 0.00 0.00 0.00 4.08
3719 6510 0.534877 AGCACGTCTTCACCATTGCA 60.535 50.000 0.00 0.00 0.00 4.08
3720 6511 0.166814 GAGCACGTCTTCACCATTGC 59.833 55.000 0.00 0.00 0.00 3.56
3721 6512 0.439985 CGAGCACGTCTTCACCATTG 59.560 55.000 0.00 0.00 34.56 2.82
3722 6513 0.670546 CCGAGCACGTCTTCACCATT 60.671 55.000 2.18 0.00 37.88 3.16
3723 6514 1.079819 CCGAGCACGTCTTCACCAT 60.080 57.895 2.18 0.00 37.88 3.55
3724 6515 2.338620 CCGAGCACGTCTTCACCA 59.661 61.111 2.18 0.00 37.88 4.17
3725 6516 3.112709 GCCGAGCACGTCTTCACC 61.113 66.667 2.18 0.00 37.88 4.02
3726 6517 3.112709 GGCCGAGCACGTCTTCAC 61.113 66.667 2.18 0.00 37.88 3.18
3727 6518 4.717629 CGGCCGAGCACGTCTTCA 62.718 66.667 24.07 0.00 37.88 3.02
3743 6534 3.032609 GATCTGCCGCATCGACCG 61.033 66.667 0.00 0.00 0.00 4.79
3744 6535 2.106938 TGATCTGCCGCATCGACC 59.893 61.111 0.00 0.00 0.00 4.79
3745 6536 2.240500 GGTGATCTGCCGCATCGAC 61.241 63.158 0.00 0.00 0.00 4.20
3746 6537 2.106938 GGTGATCTGCCGCATCGA 59.893 61.111 0.00 0.00 0.00 3.59
3747 6538 2.969238 GGGTGATCTGCCGCATCG 60.969 66.667 0.00 0.00 0.00 3.84
3748 6539 2.969238 CGGGTGATCTGCCGCATC 60.969 66.667 0.00 0.00 0.00 3.91
3749 6540 4.552365 CCGGGTGATCTGCCGCAT 62.552 66.667 0.00 0.00 0.00 4.73
3753 6544 4.241555 ATCGCCGGGTGATCTGCC 62.242 66.667 17.19 0.00 0.00 4.85
3754 6545 2.969238 CATCGCCGGGTGATCTGC 60.969 66.667 19.87 0.00 29.68 4.26
3755 6546 2.969238 GCATCGCCGGGTGATCTG 60.969 66.667 19.87 12.88 29.68 2.90
3756 6547 4.592192 CGCATCGCCGGGTGATCT 62.592 66.667 19.87 0.00 29.68 2.75
3757 6548 3.493830 TACGCATCGCCGGGTGATC 62.494 63.158 19.87 13.38 29.68 2.92
3758 6549 3.499929 CTACGCATCGCCGGGTGAT 62.500 63.158 17.19 17.19 32.60 3.06
3759 6550 4.201679 CTACGCATCGCCGGGTGA 62.202 66.667 13.48 13.48 33.58 4.02
3772 6563 1.883084 GATGAAGGGGCGTGCTACG 60.883 63.158 4.61 4.61 45.88 3.51
3773 6564 1.523938 GGATGAAGGGGCGTGCTAC 60.524 63.158 0.00 0.00 0.00 3.58
3774 6565 1.344953 ATGGATGAAGGGGCGTGCTA 61.345 55.000 0.00 0.00 0.00 3.49
3775 6566 2.615227 GATGGATGAAGGGGCGTGCT 62.615 60.000 0.00 0.00 0.00 4.40
3776 6567 2.124151 ATGGATGAAGGGGCGTGC 60.124 61.111 0.00 0.00 0.00 5.34
3777 6568 1.889105 CGATGGATGAAGGGGCGTG 60.889 63.158 0.00 0.00 0.00 5.34
3778 6569 1.410850 ATCGATGGATGAAGGGGCGT 61.411 55.000 0.00 0.00 0.00 5.68
3779 6570 0.671781 GATCGATGGATGAAGGGGCG 60.672 60.000 0.54 0.00 31.51 6.13
3780 6571 0.397941 TGATCGATGGATGAAGGGGC 59.602 55.000 0.54 0.00 31.51 5.80
3781 6572 1.696336 AGTGATCGATGGATGAAGGGG 59.304 52.381 0.54 0.00 31.51 4.79
3782 6573 4.020751 ACATAGTGATCGATGGATGAAGGG 60.021 45.833 0.54 0.00 31.51 3.95
3783 6574 5.144692 ACATAGTGATCGATGGATGAAGG 57.855 43.478 0.54 0.00 31.51 3.46
3784 6575 6.918626 AGTACATAGTGATCGATGGATGAAG 58.081 40.000 0.54 0.00 31.51 3.02
3785 6576 6.071896 GGAGTACATAGTGATCGATGGATGAA 60.072 42.308 0.54 0.00 31.51 2.57
3786 6577 5.416013 GGAGTACATAGTGATCGATGGATGA 59.584 44.000 0.54 0.00 31.51 2.92
3787 6578 5.393569 GGGAGTACATAGTGATCGATGGATG 60.394 48.000 0.54 3.34 31.51 3.51
3788 6579 4.707448 GGGAGTACATAGTGATCGATGGAT 59.293 45.833 0.54 0.00 34.96 3.41
3789 6580 4.079970 GGGAGTACATAGTGATCGATGGA 58.920 47.826 0.54 0.00 32.34 3.41
3790 6581 3.826729 TGGGAGTACATAGTGATCGATGG 59.173 47.826 0.54 0.00 32.34 3.51
3827 6618 6.015350 TGGAGCTATACTGCTATAGTGGTTTC 60.015 42.308 0.84 0.00 44.17 2.78
3837 6628 5.079643 TGTGATCATGGAGCTATACTGCTA 58.920 41.667 0.00 0.00 44.17 3.49
3841 6632 4.592351 AGCTTGTGATCATGGAGCTATACT 59.408 41.667 21.59 5.26 41.54 2.12
3842 6633 4.892433 AGCTTGTGATCATGGAGCTATAC 58.108 43.478 21.59 0.00 41.54 1.47
3843 6634 4.020751 GGAGCTTGTGATCATGGAGCTATA 60.021 45.833 22.43 0.00 43.22 1.31
3844 6635 3.244491 GGAGCTTGTGATCATGGAGCTAT 60.244 47.826 22.43 8.94 43.22 2.97
3845 6636 2.103771 GGAGCTTGTGATCATGGAGCTA 59.896 50.000 22.43 0.00 43.22 3.32
3846 6637 1.134159 GGAGCTTGTGATCATGGAGCT 60.134 52.381 22.53 22.53 45.63 4.09
3847 6638 1.307097 GGAGCTTGTGATCATGGAGC 58.693 55.000 15.88 15.88 0.00 4.70
3848 6639 2.093075 ACTGGAGCTTGTGATCATGGAG 60.093 50.000 0.00 0.00 0.00 3.86
3849 6640 1.911357 ACTGGAGCTTGTGATCATGGA 59.089 47.619 0.00 0.00 0.00 3.41
3850 6641 2.286872 GACTGGAGCTTGTGATCATGG 58.713 52.381 0.00 0.00 0.00 3.66
3851 6642 2.093075 AGGACTGGAGCTTGTGATCATG 60.093 50.000 0.00 0.00 0.00 3.07
3852 6643 2.194859 AGGACTGGAGCTTGTGATCAT 58.805 47.619 0.00 0.00 0.00 2.45
3853 6644 1.649321 AGGACTGGAGCTTGTGATCA 58.351 50.000 0.00 0.00 0.00 2.92
3854 6645 2.777832 AAGGACTGGAGCTTGTGATC 57.222 50.000 0.00 0.00 0.00 2.92
3855 6646 3.515602 AAAAGGACTGGAGCTTGTGAT 57.484 42.857 0.00 0.00 0.00 3.06
3856 6647 3.297134 AAAAAGGACTGGAGCTTGTGA 57.703 42.857 0.00 0.00 0.00 3.58
3935 6726 9.847224 AGGAACCTATGAACGATATTGTAATTT 57.153 29.630 0.00 0.00 0.00 1.82
3936 6727 9.490379 GAGGAACCTATGAACGATATTGTAATT 57.510 33.333 0.00 0.00 0.00 1.40
3937 6728 8.647796 TGAGGAACCTATGAACGATATTGTAAT 58.352 33.333 0.00 0.00 0.00 1.89
3938 6729 8.014070 TGAGGAACCTATGAACGATATTGTAA 57.986 34.615 0.00 0.00 0.00 2.41
3939 6730 7.591421 TGAGGAACCTATGAACGATATTGTA 57.409 36.000 0.00 0.00 0.00 2.41
3940 6731 6.479972 TGAGGAACCTATGAACGATATTGT 57.520 37.500 0.00 0.00 0.00 2.71
3941 6732 7.630924 GTTTGAGGAACCTATGAACGATATTG 58.369 38.462 0.00 0.00 31.85 1.90
3942 6733 7.787725 GTTTGAGGAACCTATGAACGATATT 57.212 36.000 0.00 0.00 31.85 1.28
3956 6747 3.230976 ACAAGGGATTGGTTTGAGGAAC 58.769 45.455 0.00 0.00 37.53 3.62
3957 6748 3.140144 AGACAAGGGATTGGTTTGAGGAA 59.860 43.478 0.00 0.00 0.00 3.36
3958 6749 2.716424 AGACAAGGGATTGGTTTGAGGA 59.284 45.455 0.00 0.00 0.00 3.71
3959 6750 3.084786 GAGACAAGGGATTGGTTTGAGG 58.915 50.000 0.00 0.00 0.00 3.86
3960 6751 3.754965 TGAGACAAGGGATTGGTTTGAG 58.245 45.455 0.00 0.00 0.00 3.02
3961 6752 3.394274 TCTGAGACAAGGGATTGGTTTGA 59.606 43.478 0.00 0.00 0.00 2.69
3962 6753 3.754965 TCTGAGACAAGGGATTGGTTTG 58.245 45.455 0.00 0.00 0.00 2.93
3963 6754 4.453480 TTCTGAGACAAGGGATTGGTTT 57.547 40.909 0.00 0.00 0.00 3.27
3964 6755 4.453480 TTTCTGAGACAAGGGATTGGTT 57.547 40.909 0.00 0.00 0.00 3.67
3965 6756 4.453480 TTTTCTGAGACAAGGGATTGGT 57.547 40.909 0.00 0.00 0.00 3.67
3966 6757 5.990120 AATTTTCTGAGACAAGGGATTGG 57.010 39.130 0.00 0.00 0.00 3.16
3967 6758 6.865205 GTCAAATTTTCTGAGACAAGGGATTG 59.135 38.462 0.00 0.00 0.00 2.67
3968 6759 6.779539 AGTCAAATTTTCTGAGACAAGGGATT 59.220 34.615 7.96 0.00 0.00 3.01
3969 6760 6.310149 AGTCAAATTTTCTGAGACAAGGGAT 58.690 36.000 7.96 0.00 0.00 3.85
3970 6761 5.694995 AGTCAAATTTTCTGAGACAAGGGA 58.305 37.500 7.96 0.00 0.00 4.20
3971 6762 6.712547 AGTAGTCAAATTTTCTGAGACAAGGG 59.287 38.462 7.96 0.00 0.00 3.95
3972 6763 7.659390 AGAGTAGTCAAATTTTCTGAGACAAGG 59.341 37.037 0.00 0.00 0.00 3.61
3973 6764 8.600449 AGAGTAGTCAAATTTTCTGAGACAAG 57.400 34.615 0.00 0.00 0.00 3.16
3974 6765 9.698309 CTAGAGTAGTCAAATTTTCTGAGACAA 57.302 33.333 0.00 0.00 0.00 3.18
3975 6766 7.815068 GCTAGAGTAGTCAAATTTTCTGAGACA 59.185 37.037 0.00 0.00 0.00 3.41
3976 6767 7.815068 TGCTAGAGTAGTCAAATTTTCTGAGAC 59.185 37.037 0.00 0.00 0.00 3.36
3977 6768 7.896811 TGCTAGAGTAGTCAAATTTTCTGAGA 58.103 34.615 0.00 0.00 0.00 3.27
3978 6769 8.439286 GTTGCTAGAGTAGTCAAATTTTCTGAG 58.561 37.037 0.00 0.00 0.00 3.35
3979 6770 8.150945 AGTTGCTAGAGTAGTCAAATTTTCTGA 58.849 33.333 0.00 0.00 0.00 3.27
3980 6771 8.316640 AGTTGCTAGAGTAGTCAAATTTTCTG 57.683 34.615 0.00 0.00 0.00 3.02
3981 6772 8.910351 AAGTTGCTAGAGTAGTCAAATTTTCT 57.090 30.769 0.00 0.00 31.39 2.52
3982 6773 8.774586 TGAAGTTGCTAGAGTAGTCAAATTTTC 58.225 33.333 0.00 0.00 33.64 2.29
3983 6774 8.677148 TGAAGTTGCTAGAGTAGTCAAATTTT 57.323 30.769 0.00 0.00 33.64 1.82
3984 6775 8.854614 ATGAAGTTGCTAGAGTAGTCAAATTT 57.145 30.769 0.00 0.00 33.64 1.82
3985 6776 9.944376 TTATGAAGTTGCTAGAGTAGTCAAATT 57.056 29.630 0.00 0.00 34.98 1.82
3986 6777 9.593134 CTTATGAAGTTGCTAGAGTAGTCAAAT 57.407 33.333 0.00 0.00 0.00 2.32
3987 6778 7.545965 GCTTATGAAGTTGCTAGAGTAGTCAAA 59.454 37.037 0.00 0.00 0.00 2.69
3988 6779 7.036220 GCTTATGAAGTTGCTAGAGTAGTCAA 58.964 38.462 0.00 0.00 0.00 3.18
3989 6780 6.378564 AGCTTATGAAGTTGCTAGAGTAGTCA 59.621 38.462 0.00 0.00 33.64 3.41
3990 6781 6.801575 AGCTTATGAAGTTGCTAGAGTAGTC 58.198 40.000 0.00 0.00 33.64 2.59
3991 6782 6.783708 AGCTTATGAAGTTGCTAGAGTAGT 57.216 37.500 0.00 0.00 33.64 2.73
3992 6783 7.936584 AGTAGCTTATGAAGTTGCTAGAGTAG 58.063 38.462 0.00 0.00 38.48 2.57
3993 6784 7.883391 AGTAGCTTATGAAGTTGCTAGAGTA 57.117 36.000 0.00 0.00 38.48 2.59
3994 6785 6.783708 AGTAGCTTATGAAGTTGCTAGAGT 57.216 37.500 0.00 0.00 38.48 3.24
3995 6786 9.757227 ATAAAGTAGCTTATGAAGTTGCTAGAG 57.243 33.333 0.00 0.00 38.48 2.43
3999 6790 7.970614 GCAAATAAAGTAGCTTATGAAGTTGCT 59.029 33.333 12.81 0.00 36.32 3.91
4000 6791 7.220875 GGCAAATAAAGTAGCTTATGAAGTTGC 59.779 37.037 12.08 12.08 33.98 4.17
4001 6792 8.462016 AGGCAAATAAAGTAGCTTATGAAGTTG 58.538 33.333 0.00 0.00 0.00 3.16
4002 6793 8.581253 AGGCAAATAAAGTAGCTTATGAAGTT 57.419 30.769 0.00 0.00 0.00 2.66
4003 6794 8.581253 AAGGCAAATAAAGTAGCTTATGAAGT 57.419 30.769 0.00 0.00 0.00 3.01
4004 6795 9.860898 AAAAGGCAAATAAAGTAGCTTATGAAG 57.139 29.630 0.00 0.00 0.00 3.02
4044 6835 9.394477 GCTTGTGATTTTTCGTTAGTTAGATTT 57.606 29.630 0.00 0.00 0.00 2.17
4045 6836 8.021396 GGCTTGTGATTTTTCGTTAGTTAGATT 58.979 33.333 0.00 0.00 0.00 2.40
4046 6837 7.174253 TGGCTTGTGATTTTTCGTTAGTTAGAT 59.826 33.333 0.00 0.00 0.00 1.98
4047 6838 6.483974 TGGCTTGTGATTTTTCGTTAGTTAGA 59.516 34.615 0.00 0.00 0.00 2.10
4048 6839 6.664515 TGGCTTGTGATTTTTCGTTAGTTAG 58.335 36.000 0.00 0.00 0.00 2.34
4049 6840 6.621316 TGGCTTGTGATTTTTCGTTAGTTA 57.379 33.333 0.00 0.00 0.00 2.24
4050 6841 5.508200 TGGCTTGTGATTTTTCGTTAGTT 57.492 34.783 0.00 0.00 0.00 2.24
4051 6842 5.508200 TTGGCTTGTGATTTTTCGTTAGT 57.492 34.783 0.00 0.00 0.00 2.24
4052 6843 6.820470 TTTTGGCTTGTGATTTTTCGTTAG 57.180 33.333 0.00 0.00 0.00 2.34
4073 6864 7.011295 CAGCTGTGTTTGATGGTTGTTATTTTT 59.989 33.333 5.25 0.00 0.00 1.94
4074 6865 6.479660 CAGCTGTGTTTGATGGTTGTTATTTT 59.520 34.615 5.25 0.00 0.00 1.82
4075 6866 5.984926 CAGCTGTGTTTGATGGTTGTTATTT 59.015 36.000 5.25 0.00 0.00 1.40
4076 6867 5.531634 CAGCTGTGTTTGATGGTTGTTATT 58.468 37.500 5.25 0.00 0.00 1.40
4077 6868 4.559300 GCAGCTGTGTTTGATGGTTGTTAT 60.559 41.667 16.64 0.00 0.00 1.89
4078 6869 3.243367 GCAGCTGTGTTTGATGGTTGTTA 60.243 43.478 16.64 0.00 0.00 2.41
4079 6870 2.481795 GCAGCTGTGTTTGATGGTTGTT 60.482 45.455 16.64 0.00 0.00 2.83
4080 6871 1.067516 GCAGCTGTGTTTGATGGTTGT 59.932 47.619 16.64 0.00 0.00 3.32
4081 6872 1.603678 GGCAGCTGTGTTTGATGGTTG 60.604 52.381 16.64 0.00 0.00 3.77
4082 6873 0.675633 GGCAGCTGTGTTTGATGGTT 59.324 50.000 16.64 0.00 0.00 3.67
4083 6874 1.518056 CGGCAGCTGTGTTTGATGGT 61.518 55.000 16.64 0.00 0.00 3.55
4084 6875 1.210931 CGGCAGCTGTGTTTGATGG 59.789 57.895 16.64 0.00 0.00 3.51
4085 6876 1.443194 GCGGCAGCTGTGTTTGATG 60.443 57.895 16.64 0.00 41.01 3.07
4086 6877 2.629656 GGCGGCAGCTGTGTTTGAT 61.630 57.895 16.64 0.00 44.37 2.57
4087 6878 3.286751 GGCGGCAGCTGTGTTTGA 61.287 61.111 16.64 0.00 44.37 2.69
4088 6879 4.688419 CGGCGGCAGCTGTGTTTG 62.688 66.667 16.64 2.11 44.51 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.